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Conserved domains on  [gi|40068065|ref|NP_478060|]
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uncharacterized protein C21orf58 isoform 1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4587 super family cl21107
Domain of unknown function (DUF4587); This protein family is a domain of unknown function. The ...
 234-291 2.21e-15

Domain of unknown function (DUF4587); This protein family is a domain of unknown function. The precise function of this protein domain remains to be elucidated. This domain family is found in eukaryotes, and is typically between 64 and 79 amino acids in length. There are two conserved sequence motifs: QNAQ and HHH. In humans, it is found in the position, chromosome 21 open reading frame 58.


The actual alignment was detected with superfamily member pfam15248:

Pssm-ID: 464588  Cd Length: 76  Bit Score: 69.75  E-value: 2.21e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068065   234 RSGSIKEDMVELLLLQNAQVHQLVLQNWMLKALPPAL------------QDPPHVPPRVPRAARPRLPAV 291
Cdd:pfam15248   1 RPGSIKEDMVELMLMQNAQMHQIIMQNMMLKALPPMApsppgqvylelqQESPEAAPVVERAERERPPSV 70
 
Name Accession Description Interval E-value
DUF4587 pfam15248
Domain of unknown function (DUF4587); This protein family is a domain of unknown function. The ...
 234-291 2.21e-15

Domain of unknown function (DUF4587); This protein family is a domain of unknown function. The precise function of this protein domain remains to be elucidated. This domain family is found in eukaryotes, and is typically between 64 and 79 amino acids in length. There are two conserved sequence motifs: QNAQ and HHH. In humans, it is found in the position, chromosome 21 open reading frame 58.


Pssm-ID: 464588  Cd Length: 76  Bit Score: 69.75  E-value: 2.21e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068065   234 RSGSIKEDMVELLLLQNAQVHQLVLQNWMLKALPPAL------------QDPPHVPPRVPRAARPRLPAV 291
Cdd:pfam15248   1 RPGSIKEDMVELMLMQNAQMHQIIMQNMMLKALPPMApsppgqvylelqQESPEAAPVVERAERERPPSV 70
 
Name Accession Description Interval E-value
DUF4587 pfam15248
Domain of unknown function (DUF4587); This protein family is a domain of unknown function. The ...
 234-291 2.21e-15

Domain of unknown function (DUF4587); This protein family is a domain of unknown function. The precise function of this protein domain remains to be elucidated. This domain family is found in eukaryotes, and is typically between 64 and 79 amino acids in length. There are two conserved sequence motifs: QNAQ and HHH. In humans, it is found in the position, chromosome 21 open reading frame 58.


Pssm-ID: 464588  Cd Length: 76  Bit Score: 69.75  E-value: 2.21e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40068065   234 RSGSIKEDMVELLLLQNAQVHQLVLQNWMLKALPPAL------------QDPPHVPPRVPRAARPRLPAV 291
Cdd:pfam15248   1 RPGSIKEDMVELMLMQNAQMHQIIMQNMMLKALPPMApsppgqvylelqQESPEAAPVVERAERERPPSV 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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