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Conserved domains on  [gi|17510335|ref|NP_491084|]
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J domain-containing protein [Caenorhabditis elegans]

Protein Classification

J domain-containing protein( domain architecture ID 1008844)

J domain-containing protein similar to the N-terminal conserved domain (called J domain) of DnaJ-like proteins, which is involved in regulating the ATPase activity of heat shock protein 70 (Hsp70) by ATP hydrolysis

Gene Ontology:  GO:0006457
PubMed:  9585179|23894646|15170475

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 380-445 1.08e-18

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


:

Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 79.82  E-value: 1.08e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17510335   380 DYYKILGVRRNANKREITKAYRKMAQKWHPD-NFQDekekKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDkNPGD----PEAEEKFKEINEAYEVLSDPEKRAIYD 63
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 167-363 2.64e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 70.14  E-value: 2.64e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335 167 LLETQPWDASLYIYRAKCYVAEDKVKSAIHDMKHAAKLSSDNTELLFEMSELEYKVADVRDSLGSIRECLKLNPDHKKCY 246
Cdd:COG2956  34 ALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEAL 113

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335 247 TSYkslkkivksldsMKASIEQQEWTKCLETGEKLLEKNeeiPIRMNIFRLMCQCNREDGNLGEAIQQCTRVLEFDDSDV 326
Cdd:COG2956 114 RLL------------AEIYEQEGDWEKAIEVLERLLKLG---PENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCA 178

                       170       180       190
                ....*....|....*....|....*....|....*..
gi 17510335 327 ETLIQRAEAYMADEEYDMAIADYEKAEEWDSSNDAVR 363
Cdd:COG2956 179 RALLLLAELYLEQGDYEEAIAALERALEQDPDYLPAL 215
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
23-122 7.22e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.02  E-value: 7.22e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  23 EAQREYEAGNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVL 102
Cdd:COG4785  72 LAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIAL 151

                        90       100
                ....*....|....*....|
gi 17510335 103 LKMGQLERAAADFRYLIDHS 122
Cdd:COG4785 152 YYLGRYELAIADLEKALELD 171
 
Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 380-445 1.08e-18

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 79.82  E-value: 1.08e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17510335   380 DYYKILGVRRNANKREITKAYRKMAQKWHPD-NFQDekekKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDkNPGD----PEAEEKFKEINEAYEVLSDPEKRAIYD 63
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 379-455 1.09e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 87.80  E-value: 1.09e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17510335  379 RDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekekKKAEKKFIDIAAAKEVLSNEEKRRAFDNGQDPLDSEA 455
Cdd:PRK14278   3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD----EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAG 75
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 380-445 9.00e-18

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 84.57  E-value: 9.00e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17510335   380 DYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekekKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD----KEAEEKFKEINEAYEVLSDPEKRAQYD 62
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 380-445 2.85e-17

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 78.59  E-value: 2.85e-17
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17510335 380 DYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekeKKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:COG0484   1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPG---DPEAEEKFKEINEAYEVLSDPEKRAAYD 63
DnaJ smart00271
DnaJ molecular chaperone homology domain;
379-440 1.46e-15

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 70.73  E-value: 1.46e-15
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17510335    379 RDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekEKKKAEKKFIDIAAAKEVLSNEEK 440
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPG--DKEEAEEKFKEINEAYEVLSDPEK 60
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
378-454 3.26e-15

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 77.55  E-value: 3.26e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17510335  378 KRDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekekKKAEKKFIDIAAAKEVLSNEEKRRAFDN-GQDPLDSE 454
Cdd:NF037946   4 KRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRNKA----PDAAEIFAEINEAYEVLSNPEKRANYDKyGHDGVDGE 77
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 380-437 8.26e-14

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 65.64  E-value: 8.26e-14
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 17510335 380 DYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekeKKKAEKKFIDIAAAKEVLSN 437
Cdd:cd06257   1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPD---DPEAEEKFKEINEAYEVLSD 55
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 167-363 2.64e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 70.14  E-value: 2.64e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335 167 LLETQPWDASLYIYRAKCYVAEDKVKSAIHDMKHAAKLSSDNTELLFEMSELEYKVADVRDSLGSIRECLKLNPDHKKCY 246
Cdd:COG2956  34 ALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEAL 113

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335 247 TSYkslkkivksldsMKASIEQQEWTKCLETGEKLLEKNeeiPIRMNIFRLMCQCNREDGNLGEAIQQCTRVLEFDDSDV 326
Cdd:COG2956 114 RLL------------AEIYEQEGDWEKAIEVLERLLKLG---PENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCA 178

                       170       180       190
                ....*....|....*....|....*....|....*..
gi 17510335 327 ETLIQRAEAYMADEEYDMAIADYEKAEEWDSSNDAVR 363
Cdd:COG2956 179 RALLLLAELYLEQGDYEEAIAALERALEQDPDYLPAL 215
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
23-122 7.22e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.02  E-value: 7.22e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  23 EAQREYEAGNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVL 102
Cdd:COG4785  72 LAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIAL 151

                        90       100
                ....*....|....*....|
gi 17510335 103 LKMGQLERAAADFRYLIDHS 122
Cdd:COG4785 152 YYLGRYELAIADLEKALELD 171
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 28-368 3.54e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 62.41  E-value: 3.54e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335    28 YEAGNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVLLKMGQ 107
Cdd:TIGR02917 299 LLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGD 378

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   108 LERAAadfRYLIDHSA-----------------SQETSQEAQEKLELISEHINQ-----VEMLKSWITNGDCNNVIESTT 165
Cdd:TIGR02917 379 FEKAA---EYLAKATEldpenaaartqlgisklSQGDPSEAIADLETAAQLDPElgradLLLILSYLRSGQFDKALAAAK 455

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   166 HLLETQPWDASLYIYRAKCYVAEDKVKSAIHDMKHAAKLSSDNTELLFEMSELEYKVADVRDSLGSIRECLKLNPDHKKC 245
Cdd:TIGR02917 456 KLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA 535

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   246 YTSYKSLKKIVKSLDSMKASIEQ------QEWTKCLETGEKLLEKNE-------------EIPIRMNIFRLMCQCNREDG 306
Cdd:TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKaaelnpQEIEPALALAQYYLGKGQlkkalailneaadAAPDSPEAWLMLGRAQLAAG 615

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17510335   307 NLGEAIQQCTRVLEFDDSDVETLIQRAEAYMADEEYDMAIADYEKAEEWDSSNDAVRTGKDQ 368
Cdd:TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ 677
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 194-445 5.55e-05

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 45.93  E-value: 5.55e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   194 AIHDMKHAAKLSSD----NTELLFEMSELEYkvADVRDslGSIRECLKLNPDHKKCYTSYKSLkkivksldSMKASIEQQ 269
Cdd:PTZ00341  394 AVKDGKYLDDDSSDalytDEDLLFDLEKQKY--MDMLD--GSEDESVEDNEEEHSGDANEEEL--------SVDEHVEEH 461

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   270 EWTkclETGEKLLEKNEEIPIRMNIFRLMCQCNR--EDGNLGEAIQQctrvlEFDDSDVE--TLIQRAEAYMADEEYDMA 345
Cdd:PTZ00341  462 NAD---DSGEQQSDDESGEHQSVNEIVEEQSVNEhvEEPTVADIVEQ-----ETVDEHVEepAVDENEEQQTADEHVEEP 533

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   346 IADYEKAEEWDSSN----DAVRTGKDQAKRAKELVGKRD--YYKILGVRRNANKREITKAYRKMAQKWHPDNFQdekeKK 419
Cdd:PTZ00341  534 TIAEEHVEEEISTAeehiEEPASDVQQDSEAAPTIEIPDtlFYDILGVGVNADMKEISERYFKLAENYYPPKRS----GN 609

                         250       260
                  ....*....|....*....|....*.
gi 17510335   420 KAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PTZ00341  610 EGFHKFKKINEAYQILGDIDKKKMYN 635
TPR_1 pfam00515
Tetratricopeptide repeat;
31-56 2.43e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.47  E-value: 2.43e-03
                          10        20
                  ....*....|....*....|....*.
gi 17510335    31 GNALFVNRQYSDALTHYHKAIELNPT 56
Cdd:pfam00515   8 GNAYFKLGKYDEALEYYEKALELNPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 28-57 7.07e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.34  E-value: 7.07e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 17510335     28 YEAGNALFVNRQYSDALTHYHKAIELNPTM 57
Cdd:smart00028   5 YNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 326-359 9.22e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 33.96  E-value: 9.22e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 17510335    326 VETLIQRAEAYMADEEYDMAIADYEKAEEWDSSN 359
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 380-445 1.08e-18

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 79.82  E-value: 1.08e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17510335   380 DYYKILGVRRNANKREITKAYRKMAQKWHPD-NFQDekekKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDkNPGD----PEAEEKFKEINEAYEVLSDPEKRAIYD 63
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 379-455 1.09e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 87.80  E-value: 1.09e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17510335  379 RDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekekKKAEKKFIDIAAAKEVLSNEEKRRAFDNGQDPLDSEA 455
Cdd:PRK14278   3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD----EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAG 75
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 378-445 1.32e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 87.12  E-value: 1.32e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17510335  378 KRDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekeKKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK10767   3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPG---DKEAEEKFKEIKEAYEVLSDPQKRAAYD 67
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 380-445 9.00e-18

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 84.57  E-value: 9.00e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17510335   380 DYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekekKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD----KEAEEKFKEINEAYEVLSDPEKRAQYD 62
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 380-445 2.85e-17

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 78.59  E-value: 2.85e-17
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17510335 380 DYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekeKKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:COG0484   1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPG---DPEAEEKFKEINEAYEVLSDPEKRAAYD 63
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 378-445 1.21e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 81.78  E-value: 1.21e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17510335  378 KRDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekeKKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14281   2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPD---NKEAEEHFKEVNEAYEVLSNDDKRRRYD 66
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 375-445 4.05e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 79.87  E-value: 4.05e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17510335  375 LVGKRDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekekKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14283   1 MAEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE----EGAEEKFKEISEAYAVLSDDEKRQRYD 67
DnaJ smart00271
DnaJ molecular chaperone homology domain;
379-440 1.46e-15

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 70.73  E-value: 1.46e-15
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17510335    379 RDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekEKKKAEKKFIDIAAAKEVLSNEEK 440
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPG--DKEEAEEKFKEINEAYEVLSDPEK 60
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 378-445 1.64e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 78.27  E-value: 1.64e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17510335  378 KRDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekekKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14291   2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN----PEAEEKFKEINEAYQVLSDPEKRKLYD 65
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
378-454 3.26e-15

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 77.55  E-value: 3.26e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17510335  378 KRDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekekKKAEKKFIDIAAAKEVLSNEEKRRAFDN-GQDPLDSE 454
Cdd:NF037946   4 KRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRNKA----PDAAEIFAEINEAYEVLSNPEKRANYDKyGHDGVDGE 77
PRK14280 PRK14280
molecular chaperone DnaJ;
378-445 4.22e-15

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 76.68  E-value: 4.22e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17510335  378 KRDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekekKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14280   3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE----EGADEKFKEISEAYEVLSDDQKRAQYD 66
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 379-445 1.12e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 75.35  E-value: 1.12e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17510335  379 RDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekEKKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14290   3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPG--NKAEAEEKFKEISEAYEVLSDPQKRRQYD 67
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 375-445 1.80e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 74.84  E-value: 1.80e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17510335  375 LVGKRDYYKILGVRRNANKREITKAYRKMAQKWHPD-NFQDekekKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14277   1 MAAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDlNPGD----KEAEQKFKEINEAYEILSDPQKRAQYD 68
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 378-445 1.86e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 74.83  E-value: 1.86e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17510335  378 KRDYYKILGVRRNANKREITKAYRKMAQKWHPD-NFQDekeKKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14282   3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDrHPEN---RKEAEQKFKEIQEAYEVLSDPQKRAMYD 68
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 377-445 4.81e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 73.65  E-value: 4.81e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  377 GKRDYYKILGVRRNANKREITKAYRKMAQKWHPD-NFQDekekKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14294   2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDrNPGD----KEAEELFKEAAEAYEVLSDPKKRGIYD 67
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 380-437 8.26e-14

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 65.64  E-value: 8.26e-14
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 17510335 380 DYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekeKKKAEKKFIDIAAAKEVLSN 437
Cdd:cd06257   1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPD---DPEAEEKFKEINEAYEVLSD 55
termin_org_DnaJ TIGR03835
terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ ...
 378-454 1.62e-13

terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274808 [Multi-domain]  Cd Length: 871  Bit Score: 73.31  E-value: 1.62e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17510335   378 KRDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekekKKAEKKFIDIAAAKEVLSNEEKRRAFDN-GQDPLDSE 454
Cdd:TIGR03835   1 KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA----PDAASIFAEINEANDVLSNPKKRANYDKyGHDGVDRE 74
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 378-445 1.66e-13

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 72.04  E-value: 1.66e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17510335  378 KRDYYKILGVRRNANKREITKAYRKMAQKWHPdnfqDEKEKKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14276   3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHP----DINKEPGAEEKYKEVQEAYETLSDPQKRAAYD 66
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 167-363 2.64e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 70.14  E-value: 2.64e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335 167 LLETQPWDASLYIYRAKCYVAEDKVKSAIHDMKHAAKLSSDNTELLFEMSELEYKVADVRDSLGSIRECLKLNPDHKKCY 246
Cdd:COG2956  34 ALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEAL 113

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335 247 TSYkslkkivksldsMKASIEQQEWTKCLETGEKLLEKNeeiPIRMNIFRLMCQCNREDGNLGEAIQQCTRVLEFDDSDV 326
Cdd:COG2956 114 RLL------------AEIYEQEGDWEKAIEVLERLLKLG---PENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCA 178

                       170       180       190
                ....*....|....*....|....*....|....*..
gi 17510335 327 ETLIQRAEAYMADEEYDMAIADYEKAEEWDSSNDAVR 363
Cdd:COG2956 179 RALLLLAELYLEQGDYEEAIAALERALEQDPDYLPAL 215
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
379-445 2.85e-13

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 65.51  E-value: 2.85e-13
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17510335 379 RDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekEKKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:COG2214   5 KDHYAVLGVPPDASLEEIRQAYRRLAKLLHPDRGGE--LKALAEELFQRLNEAYEVLSDPERRAEYD 69
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 378-445 2.85e-13

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 70.35  E-value: 2.85e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17510335  378 KRDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekekKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14299   3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS----PGAEEKFKEINEAYTVLSDPEKRRIYD 66
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 378-445 2.87e-13

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 71.03  E-value: 2.87e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17510335  378 KRDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekekKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14298   4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE----PDAEEKFKEISEAYAVLSDAEKRAQYD 67
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 28-320 2.87e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 70.14  E-value: 2.87e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  28 YEAGNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVLLKMGQ 107
Cdd:COG2956  12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335 108 LERAAADFRYLIDHSASQEtsqEAQEKLELISEHINQVEMLkswitngdcnnvIESTTHLLETQPWDASLYIYRAKCYVA 187
Cdd:COG2956  92 LDRAEELLEKLLELDPDDA---EALRLLAEIYEQEGDWEKA------------IEVLERLLKLGPENAHAYCELAELYLE 156

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335 188 EDKVKSAIHDMKHAAKLSSDNTELLFEMSELEYKVADVRDSLGSIRECLKLNPDHKKCYTSYkslkkivksldsMKASIE 267
Cdd:COG2956 157 QGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRL------------AELYEK 224

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|...
gi 17510335 268 QQEWTKCLETGEKLLEKNEEIPIRMNIFRLMCQCNREDgnlgEAIQQCTRVLE 320
Cdd:COG2956 225 LGDPEEALELLRKALELDPSDDLLLALADLLERKEGLE----AALALLERQLR 273
SEC63 COG5407
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ...
 380-443 4.66e-13

Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444165 [Multi-domain]  Cd Length: 61  Bit Score: 63.87  E-value: 4.66e-13
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17510335 380 DYYKILGVRRNANKREITKAYRKMAQKWHPD-NFQDekekKKAEKKFIDIAAAKEVLSNEEKRRA 443
Cdd:COG5407   1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPDrNKGD----PKAEERFKEINEAYELLSDAEKRAR 61
PRK14295 PRK14295
molecular chaperone DnaJ;
378-446 6.24e-13

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 70.26  E-value: 6.24e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17510335  378 KRDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekeKKKAEKKFIDIAAAKEVLSNEEKRRAFDN 446
Cdd:PRK14295   8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKG---DAKAEERFKEISEAYDVLSDEKKRKEYDE 73
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
23-122 7.22e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.02  E-value: 7.22e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  23 EAQREYEAGNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVL 102
Cdd:COG4785  72 LAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIAL 151

                        90       100
                ....*....|....*....|
gi 17510335 103 LKMGQLERAAADFRYLIDHS 122
Cdd:COG4785 152 YYLGRYELAIADLEKALELD 171
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 31-116 8.31e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 70.79  E-value: 8.31e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  31 GNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVLLKMGQLER 110
Cdd:COG3914 119 GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198


                ....*.
gi 17510335 111 AAADFR 116
Cdd:COG3914 199 AIAAYR 204
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 23-116 1.06e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 70.41  E-value: 1.06e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  23 EAQREYEAGNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVL 102
Cdd:COG3914  77 LAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL 156

                        90
                ....*....|....
gi 17510335 103 LKMGQLERAAADFR 116
Cdd:COG3914 157 RRLGRLEEAIAALR 170
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 360-452 1.36e-12

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 69.46  E-value: 1.36e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  360 DAVRTGKDQAKRAKELVGKRDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekekkkaEKKFIDIAAAKEVLSNEE 439
Cdd:PTZ00037   9 DGMPGGGFDGGRRKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-------PEKFKEISRAYEVLSDPE 81

                         90
                 ....*....|....
gi 17510335  440 KRRAFDN-GQDPLD 452
Cdd:PTZ00037  82 KRKIYDEyGEEGLE 95
PRK14293 PRK14293
molecular chaperone DnaJ;
379-445 1.63e-12

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 68.86  E-value: 1.63e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17510335  379 RDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekekKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14293   3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE----PGAEDRFKEINRAYEVLSDPETRARYD 65
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 378-445 2.35e-12

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 68.23  E-value: 2.35e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17510335  378 KRDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekeKKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14301   3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPD---NPEAEQKFKEAAEAYEVLRDAEKRARYD 67
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 380-449 3.48e-12

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 67.95  E-value: 3.48e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17510335  380 DYYKILGVRRNANKREITKAYRKMAQKWHPD-NFQDekekKKAEKKFIDIAAAKEVLSNEEKRRAFDN-GQD 449
Cdd:PRK14284   2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDkNPGD----AEAEKRFKEVSEAYEVLSDAQKRESYDRyGKD 69
PRK14289 PRK14289
molecular chaperone DnaJ;
378-445 8.01e-12

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 66.78  E-value: 8.01e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17510335  378 KRDYYKILGVRRNANKREITKAYRKMAQKWHPD-NFQDekekKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14289   4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDkNPGD----KEAEEKFKEAAEAYDVLSDPDKRSRYD 68
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
31-203 1.77e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 64.26  E-value: 1.77e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  31 GNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVLLKMGQLER 110
Cdd:COG0457  15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEE 94

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335 111 AAADFRYLIDHSASQEtsqEAQEKLELISEHINQVEmlkswitngdcnNVIESTTHLLETQPWDASLYIYRAKCYVAEDK 190
Cdd:COG0457  95 ALEDYDKALELDPDDA---EALYNLGLALLELGRYD------------EAIEAYERALELDPDDADALYNLGIALEKLGR 159

                       170
                ....*....|...
gi 17510335 191 VKSAIHDMKHAAK 203
Cdd:COG0457 160 YEEALELLEKLEA 172
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 379-454 2.40e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 65.42  E-value: 2.40e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17510335  379 RDYYKILGVRRNANKREITKAYRKMAQKWHPDNfqdeKEKKKAEKKFIDIAAAKEVLSNEEKRRAFDN-GQDPLDSE 454
Cdd:PRK14300   3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDT----TDAKDAEKKFKEINAAYDVLKDEQKRAAYDRfGHDAFQNQ 75
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 378-445 4.13e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 64.63  E-value: 4.13e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17510335  378 KRDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekeKKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14285   2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKG---NKEAESIFKEATEAYEVLIDDNKRAQYD 66
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 24-122 9.60e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.82  E-value: 9.60e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  24 AQREYEAGNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVLL 103
Cdd:COG4783   4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                        90
                ....*....|....*....
gi 17510335 104 KMGQLERAAADFRYLIDHS 122
Cdd:COG4783  84 KAGDYDEALALLEKALKLD 102
PRK14297 PRK14297
molecular chaperone DnaJ;
378-445 1.10e-10

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 63.26  E-value: 1.10e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17510335  378 KRDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekeKKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14297   3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKG---NKEAEEKFKEINEAYQVLSDPQKKAQYD 67
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 376-445 1.54e-10

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 62.72  E-value: 1.54e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  376 VGKRDYYKILGVRRNANKREITKAYRKMAQKWHPdnfqDEKEKKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14287   1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHP----DVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYD 66
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 28-368 3.54e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 62.41  E-value: 3.54e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335    28 YEAGNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVLLKMGQ 107
Cdd:TIGR02917 299 LLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGD 378

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   108 LERAAadfRYLIDHSA-----------------SQETSQEAQEKLELISEHINQ-----VEMLKSWITNGDCNNVIESTT 165
Cdd:TIGR02917 379 FEKAA---EYLAKATEldpenaaartqlgisklSQGDPSEAIADLETAAQLDPElgradLLLILSYLRSGQFDKALAAAK 455

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   166 HLLETQPWDASLYIYRAKCYVAEDKVKSAIHDMKHAAKLSSDNTELLFEMSELEYKVADVRDSLGSIRECLKLNPDHKKC 245
Cdd:TIGR02917 456 KLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA 535

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   246 YTSYKSLKKIVKSLDSMKASIEQ------QEWTKCLETGEKLLEKNE-------------EIPIRMNIFRLMCQCNREDG 306
Cdd:TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKaaelnpQEIEPALALAQYYLGKGQlkkalailneaadAAPDSPEAWLMLGRAQLAAG 615

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17510335   307 NLGEAIQQCTRVLEFDDSDVETLIQRAEAYMADEEYDMAIADYEKAEEWDSSNDAVRTGKDQ 368
Cdd:TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ 677
PRK10266 PRK10266
curved DNA-binding protein;
379-446 3.65e-10

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 60.99  E-value: 3.65e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17510335  379 RDYYKILGVRRNANKREITKAYRKMAQKWHPdnfqDEKEKKKAEKKFIDIAAAKEVLSNEEKRRAFDN 446
Cdd:PRK10266   4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHP----DVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQ 67
PRK14279 PRK14279
molecular chaperone DnaJ;
379-445 7.54e-10

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 60.52  E-value: 7.54e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17510335  379 RDYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekeKKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14279   9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPG---DPAAEERFKAVSEAHDVLSDPAKRKEYD 72
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 376-445 7.76e-10

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 60.39  E-value: 7.76e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  376 VGKRDYYKILGVRRNANKREITKAYRKMAQKWHPDNfqdEKEKKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14286   1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDK---NKGNKESEEKFKEATEAYEILRDPKKRQAYD 67
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 28-136 9.18e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 56.55  E-value: 9.18e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  28 YEAGNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVLLKMGQ 107
Cdd:COG4235  21 LLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGD 100

                        90       100
                ....*....|....*....|....*....
gi 17510335 108 LERAAADFRYLIDHSASQETSQEAQEKLE 136
Cdd:COG4235 101 YAEAIAAWQKLLALLPADAPARLLEASIA 129
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 380-445 1.04e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 60.29  E-value: 1.04e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17510335  380 DYYKILGVRRNANKREITKAYRKMAQKWHPDNFQDekekKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14292   3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE----KGAAEKFAQINEAYAVLSDAEKRAHYD 64
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 378-445 1.22e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 59.96  E-value: 1.22e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17510335  378 KRDYYKILGVRRNANKREITKAYRKMAQKWHPdnfqDEKEKKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14296   3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHP----DLNKSPDAHDKMVEINEAADVLLDKDKRKQYD 66
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
168-406 6.44e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.55  E-value: 6.44e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335 168 LETQPWDASLYIYRAKCYVAEDKVKSAIHDMKHAAKLSSDNTELLFEMSELEYKVADVRDSLGSIRECLKLNPDHKKCYt 247
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEAL- 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335 248 sykslkkivksldSMKASI--EQQEWTKCLETGEKLLEKNEEIPirmNIFRLMCQCNREDGNLGEAIQQCTRVLEFDDSD 325
Cdd:COG0457  80 -------------NNLGLAlqALGRYEEALEDYDKALELDPDDA---EALYNLGLALLELGRYDEAIEAYERALELDPDD 143

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335 326 VETLIQRAEAYMADEEYDMAIADYEKAEEWDSSNDAVRTGKDQAKRAKELVGKRDYYKILGVRRNANKREITKAYRKMAQ 405
Cdd:COG0457 144 ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELL 223


                .
gi 17510335 406 K 406
Cdd:COG0457 224 L 224
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 28-116 1.32e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 53.66  E-value: 1.32e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  28 YEAGNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVLLKMGQ 107
Cdd:COG4783  42 ALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGR 121


                ....*....
gi 17510335 108 LERAAADFR 116
Cdd:COG4783 122 PDEAIAALE 130
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 31-118 4.30e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.77  E-value: 4.30e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  31 GNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVLLKMGQLER 110
Cdd:COG3914 153 GEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEV 232


                ....*...
gi 17510335 111 AAADFRYL 118
Cdd:COG3914 233 YDRFEELL 240
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
51-242 6.02e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.86  E-value: 6.02e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  51 IELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVLLKMGQLERAAADFRYLIdhsASQETSQE 130
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQAL---ELDPDDAE 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335 131 AQEKLELISEHINQVEMlkswitngdcnnVIESTTHLLETQPWDASLYIYRAKCYVAEDKVKSAIHDMKHAAKLSSDNTE 210
Cdd:COG0457  78 ALNNLGLALQALGRYEE------------ALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145

                       170       180       190
                ....*....|....*....|....*....|..
gi 17510335 211 LLFEMSELEYKVADVRDSLGSIRECLKLNPDH 242
Cdd:COG0457 146 ALYNLGIALEKLGRYEEALELLEKLEAAALAA 177
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 18-116 7.77e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.88  E-value: 7.77e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  18 LDDKTEAQREYEAGNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQ 97
Cdd:COG5010  48 DKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSN 127

                        90
                ....*....|....*....
gi 17510335  98 RASVLLKMGQLERAAADFR 116
Cdd:COG5010 128 LAALLLSLGQDDEAKAALQ 146
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 31-362 1.17e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 54.32  E-value: 1.17e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335    31 GNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVLLKMGQLER 110
Cdd:TIGR02917 472 GAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEE 551

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   111 AAADFRylidhSASQETSQEAQEKLELISEHINQ-----------------------VEML-KSWITNGDCNNVIESTTH 166
Cdd:TIGR02917 552 AVAWLE-----KAAELNPQEIEPALALAQYYLGKgqlkkalailneaadaapdspeaWLMLgRAQLAAGDLNKAVSSFKK 626

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   167 LLETQPWDASLYIYRAKCYVAEDKVKSAIHDMKHAAKLSSDNTELLFEMSELEYKVADVRDSLGSIRECLKLNPDHkkcy 246
Cdd:TIGR02917 627 LLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA---- 702

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   247 tsykslKKIVKSLDSMKAsiEQQEWTKCLETGEKLLEKNEEIPIRMNIFRLMCQcnreDGNLGEAIQQCTRVLEFDDSDV 326
Cdd:TIGR02917 703 ------ALGFELEGDLYL--RQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLA----SGNTAEAVKTLEAWLKTHPNDA 770

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 17510335   327 ETLIQRAEAYMADEEYDMAIADYEKAEEWDSSNDAV 362
Cdd:TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVV 806
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 31-453 2.10e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 53.55  E-value: 2.10e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335    31 GNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVLLKMGQLER 110
Cdd:TIGR02917 200 GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYED 279

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   111 AAADFRYLIDHSASQ-------ETSQEAQEKLELISEHINQVE------------MLKSWITNGDCNNVIESTTHLLETQ 171
Cdd:TIGR02917 280 ARETLQDALKSAPEYlpalllaGASEYQLGNLEQAYQYLNQILkyapnshqarrlLASIQLRLGRVDEAIATLSPALGLD 359

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   172 PWDASLYIYRAKCYVAEDKVKSAIHDMKHAAKLSSDNTELLFEMSELEYKVADVRDSLGSIRECLKLNPDHKKCYT---- 247
Cdd:TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLllil 439

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   248 SYKSLKKIVKSLDSMKASIEQQ------------------EWTKCLETGEKLLEKNEE-IPIRMNIFRLmcqcNREDGNL 308
Cdd:TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQpdnaslhnllgaiylgkgDLAKAREAFEKALSIEPDfFPAAANLARI----DIQEGNP 515

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   309 GEAIQQCTRVLEFDDSDVETLIQRAEAYMADEEYDMAIADYEKAEEWDSSNDAVR-------TGKDQAKRAKELV----- 376
Cdd:TIGR02917 516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAlalaqyyLGKGQLKKALAILneaad 595

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   377 GKRD---YYKILGVRRNANK--REITKAYRKMAqKWHPDNFQDEKEKKKAEKKFIDIAAAKEVLsneekRRAFDNGQDPL 451
Cdd:TIGR02917 596 AAPDspeAWLMLGRAQLAAGdlNKAVSSFKKLL-ALQPDSALALLLLADAYAVMKNYAKAITSL-----KRALELKPDNT 669


                  ..
gi 17510335   452 DS 453
Cdd:TIGR02917 670 EA 671
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 19-124 1.12e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.11  E-value: 1.12e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  19 DDKTEAQREYEAGNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQR 98
Cdd:COG2956 139 LGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRL 218

                        90       100
                ....*....|....*....|....*.
gi 17510335  99 ASVLLKMGQLERAAADFRYLIDHSAS 124
Cdd:COG2956 219 AELYEKLGDPEEALELLRKALELDPS 244
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
31-126 1.46e-06

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 49.50  E-value: 1.46e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  31 GNALFVNRQYSDALTHYHKAIE-LNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQ--RASVLLKMGQ 107
Cdd:COG4700  96 ADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKSSDAHllYARALEALGD 175

                        90
                ....*....|....*....
gi 17510335 108 LERAAADFRYLIDHSASQE 126
Cdd:COG4700 176 LEAAEAELEALARRYSGPE 194
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
39-124 2.44e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.93  E-value: 2.44e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  39 QYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLAdLDTVLSQKPDFAGARQQRASVLLKMGQLERAAADFRYL 118
Cdd:COG3063   7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85


                ....*.
gi 17510335 119 IDHSAS 124
Cdd:COG3063  86 LELDPS 91
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 19-212 3.31e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.57  E-value: 3.31e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  19 DDKTEAQreYEAGNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQR 98
Cdd:COG2956  73 PDRAEAL--LELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL 150

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  99 ASVLLKMGQLERAAADFRYLIDHSASqetSQEAQEKLELIsehinqvemlksWITNGDCNNVIESTTHLLETQPWDASLY 178
Cdd:COG2956 151 AELYLEQGDYDEAIEALEKALKLDPD---CARALLLLAEL------------YLEQGDYEEAIAALERALEQDPDYLPAL 215

                       170       180       190
                ....*....|....*....|....*....|....
gi 17510335 179 IYRAKCYVAEDKVKSAIHDMKHAAKLSSDNTELL 212
Cdd:COG2956 216 PRLAELYEKLGDPEEALELLRKALELDPSDDLLL 249
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 8-373 4.29e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 49.31  E-value: 4.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335     8 LLSCFEFIYSLDDKTEAQREYEAGNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQ 87
Cdd:TIGR02917 109 VLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTA 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335    88 KPDFAGARQQRASVLLKMGQLERAAADFRYLIDHsasqetsqeaqeklelisehinqvemlkswitngdcnnviestthl 167
Cdd:TIGR02917 189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIAL---------------------------------------------- 222

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   168 letQPWDASLYIYRAKCYVAEDKVKSAIHDMKHAAKLSSDNTELLFEMSELEYKVADVRDSLGSIRECLKLNPDHkkcyt 247
Cdd:TIGR02917 223 ---RPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEY----- 294

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   248 sykslkKIVKSLDSMkASIEQQEWTKCLETGEKLLEKNEEIPirmNIFRLMCQCNREDGNLGEAIQQCTRVLEFDDSDVE 327
Cdd:TIGR02917 295 ------LPALLLAGA-SEYQLGNLEQAYQYLNQILKYAPNSH---QARRLLASIQLRLGRVDEAIATLSPALGLDPDDPA 364

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 17510335   328 TLIQRAEAYMADEEYDMAIADYEKAEEWDSSNDAVRTGKDQAKRAK 373
Cdd:TIGR02917 365 ALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQ 410
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 29-359 4.54e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 49.21  E-value: 4.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335    29 EAGNALFVNRQYSDALTHYHKAIEL--NPTMYQaifRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVLLKMG 106
Cdd:TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECkpDPVYYS---NRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   107 QLERAAADFRYL-IDHSASQETSQEAQEKLelisehINQVEMLKSwitngdcNNVIESTTHLLETQPWDAS-LYIYRAKC 184
Cdd:TIGR00990 209 KYADALLDLTAScIIDGFRNEQSAQAVERL------LKKFAESKA-------KEILETKPENLPSVTFVGNyLQSFRPKP 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   185 YVA--EDKVKSAIHDMKHAAKL-----SSDNTELLFEMSELEYKVADvrdsLGSIRECLKLNPDHKKCYTSYKSlkKIVK 257
Cdd:TIGR00990 276 RPAglEDSNELDEETGNGQLQLglkspESKADESYEEAARAFEKALD----LGKLGEKEAIALNLRGTFKCLKG--KHLE 349

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   258 SLDSMKASIEQQewtkcletgekllekneeiPIRMNIFRLMCQCNREDGNLGEAIQQCTRVLEFDDSDVETLIQRAEAYM 337
Cdd:TIGR00990 350 ALADLSKSIELD-------------------PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF 410

                         330       340
                  ....*....|....*....|..
gi 17510335   338 ADEEYDMAIADYEKAEEWDSSN 359
Cdd:TIGR00990 411 IKGEFAQAGKDYQKSIDLDPDF 432
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
379-412 6.57e-06

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 44.02  E-value: 6.57e-06
                        10        20        30
                ....*....|....*....|....*....|....
gi 17510335 379 RDYYKILGVRRNANKREITKAYRKMAQKWHPDNF 412
Cdd:COG1076   4 DDAFELLGLPPDADDAELKRAYRKLQREHHPDRL 37
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 85-364 7.14e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.45  E-value: 7.14e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  85 LSQKPDFAGARQQRASVLLKMGQLERAAADFRYLIDHSASQETSQEAQEKLELISEHINQVEMLKSWITNGDCNNVIEST 164
Cdd:COG3914   6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAA 85

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335 165 THLLETQPWDASLYIYRakcyvaedkvksaihdmkHAAKLSSDNTELLFEMSELEYKVADVRDSLGSIRECLKLNPDHKK 244
Cdd:COG3914  86 LLLQALGRYEEALALYR------------------RALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE 147

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335 245 CYTSYkslkkivksldsmkasieqqewtkcletgekllekneeipirmnifrlmCQCNREDGNLGEAIQQCTRVLEFDDS 324
Cdd:COG3914 148 AYLNL-------------------------------------------------GEALRRLGRLEEAIAALRRALELDPD 178

                       250       260       270       280
                ....*....|....*....|....*....|....*....|
gi 17510335 325 DVETLIQRAEAYMADEEYDMAIADYEKAEEWDSSNDAVRT 364
Cdd:COG3914 179 NAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHS 218
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 33-138 7.28e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 44.98  E-value: 7.28e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  33 ALFVNRQYSDALTHYHKAIELNPT---MYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPD---FAGARQQRASVLLKMG 106
Cdd:COG1729   2 ALLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELG 81

                        90       100       110
                ....*....|....*....|....*....|..
gi 17510335 107 QLERAAADFRYLIDHSASQETSQEAQEKLELI 138
Cdd:COG1729  82 DYDKARATLEELIKKYPDSEAAKEARARLARL 113
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
28-120 7.40e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 47.22  E-value: 7.40e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  28 YEAGNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGA------------- 94
Cdd:COG4785 111 NNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERalwlylaerkldp 190

                        90       100       110
                ....*....|....*....|....*....|...
gi 17510335  95 -------RQQRASVLLKMGQLERAAADFRYLID 120
Cdd:COG4785 191 ekalallLEDWATAYLLQGDTEEARELFKLALA 223
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 41-362 2.23e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.00  E-value: 2.23e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335    41 SDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVLLKMGQLERAAADFR---- 116
Cdd:TIGR02917 414 SEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEkals 493

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   117 ----------YLIDHSASQETSQEAQEKLE-LISEHINQVEML----KSWITNGDCNNVIESTTHLLETQPWDASLYIYR 181
Cdd:TIGR02917 494 iepdffpaaaNLARIDIQEGNPDDAIQRFEkVLTIDPKNLRAIlalaGLYLRTGNEEEAVAWLEKAAELNPQEIEPALAL 573

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   182 AKCYVAEDKVKSAIHDMKHAAKLSSDNTELLFEMSELEYKVADVRDSLGSIRECLKLNPD----HKKCYTSYKSLKKIVK 257
Cdd:TIGR02917 574 AQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDsalaLLLLADAYAVMKNYAK 653

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   258 SLDSMKASIEqqewtkcletgekLLEKNEEIPIRMNIFRLmcqcnrEDGNLGEAIQQCTRVLEFDDSDVETLIQRAEAYM 337
Cdd:TIGR02917 654 AITSLKRALE-------------LKPDNTEAQIGLAQLLL------AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYL 714

                         330       340
                  ....*....|....*....|....*
gi 17510335   338 ADEEYDMAIADYEKAEEWDSSNDAV 362
Cdd:TIGR02917 715 RQKDYPAAIQAYRKALKRAPSSQNA 739
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 168-354 3.48e-05

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 46.52  E-value: 3.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   168 LETQPWDASLYIYRAKCYVAEDKVKSAIHDMKHAAKLSSDNTELLFEMSELEYKVADVRDSLGSIRECLKLNPDHKKCYT 247
Cdd:TIGR00990 392 LKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYN 471

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   248 SYKSLkkivksldsmkaSIEQQEWTKCLETGEKLLE-KNEEIPIRMNIFRLMCQC---NREDGNLGEAIQQCTRVLEFDD 323
Cdd:TIGR00990 472 YYGEL------------LLDQNKFDEAIEKFDTAIElEKETKPMYMNVLPLINKAlalFQWKQDFIEAENLCEKALIIDP 539

                         170       180       190
                  ....*....|....*....|....*....|.
gi 17510335   324 SDVETLIQRAEAYMADEEYDMAIADYEKAEE 354
Cdd:TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAE 570
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 23-249 3.57e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 46.52  E-value: 3.57e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  23 EAQREYEAGNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVL 102
Cdd:COG3914  43 LALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLL 122

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335 103 LKMGQLERAAADFRylidhsasqetsqeaqeklelisehinqvemlkswitngdcnnviesttHLLETQPWDASLYIYRA 182
Cdd:COG3914 123 LALGRLEEALAALR-------------------------------------------------RALALNPDFAEAYLNLG 153

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17510335 183 KCYVAEDKVKSAIHDMKHAAKLSSDNTELLFEMSELEYKVADVRDSLGSIRECLKLNPDHKKCYTSY 249
Cdd:COG3914 154 EALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 168-242 4.21e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.07  E-value: 4.21e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17510335 168 LETQPWDASLYIYRAKCYVAEDKVKSAIHDMKHAAKLSSDNTELLFEMSELEYKVADVRDSLGSIRECLKLNPDH 242
Cdd:COG4235  10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDN 84
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 194-445 5.55e-05

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 45.93  E-value: 5.55e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   194 AIHDMKHAAKLSSD----NTELLFEMSELEYkvADVRDslGSIRECLKLNPDHKKCYTSYKSLkkivksldSMKASIEQQ 269
Cdd:PTZ00341  394 AVKDGKYLDDDSSDalytDEDLLFDLEKQKY--MDMLD--GSEDESVEDNEEEHSGDANEEEL--------SVDEHVEEH 461

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   270 EWTkclETGEKLLEKNEEIPIRMNIFRLMCQCNR--EDGNLGEAIQQctrvlEFDDSDVE--TLIQRAEAYMADEEYDMA 345
Cdd:PTZ00341  462 NAD---DSGEQQSDDESGEHQSVNEIVEEQSVNEhvEEPTVADIVEQ-----ETVDEHVEepAVDENEEQQTADEHVEEP 533

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335   346 IADYEKAEEWDSSN----DAVRTGKDQAKRAKELVGKRD--YYKILGVRRNANKREITKAYRKMAQKWHPDNFQdekeKK 419
Cdd:PTZ00341  534 TIAEEHVEEEISTAeehiEEPASDVQQDSEAAPTIEIPDtlFYDILGVGVNADMKEISERYFKLAENYYPPKRS----GN 609

                         250       260
                  ....*....|....*....|....*.
gi 17510335   420 KAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PTZ00341  610 EGFHKFKKINEAYQILGDIDKKKMYN 635
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 154-242 1.15e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.10  E-value: 1.15e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335 154 NGDCNNVIESTTHLLETQPWDASLYIYRAKCYVAEDKVKSAIHDMKHAAKLSSDNTELLFEMSELEYKVADVRDSLGSIR 233
Cdd:COG4783  17 AGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLE 96


                ....*....
gi 17510335 234 ECLKLNPDH 242
Cdd:COG4783  97 KALKLDPEH 105
PRK14288 PRK14288
molecular chaperone DnaJ;
381-445 1.48e-04

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 43.91  E-value: 1.48e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17510335  381 YYKILGVRRNANKREITKAYRKMAQKWHPDNfqdEKEKKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Cdd:PRK14288   5 YYEILEVEKHSNQETIKKSYRKLALKYHPDR---NAGDKEAEEKFKLINEAYGVLSDEKKRALYD 66
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
28-140 1.61e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.46  E-value: 1.61e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  28 YEAGNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVLLKMGQ 107
Cdd:COG0457 114 YNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAA 193

                        90       100       110
                ....*....|....*....|....*....|...
gi 17510335 108 LERAAADFRYLIDHSASQETSQEAQEKLELISE 140
Cdd:COG0457 194 EVLLALLLALEQALRKKLAILTLAALAELLLLA 226
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
28-115 2.08e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 42.59  E-value: 2.08e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335  28 YEAGNALFVNRQYSDALThYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVLLKMGQ 107
Cdd:COG4785  44 LALALAAAALAAAALAAE-RIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGD 122


                ....*...
gi 17510335 108 LERAAADF 115
Cdd:COG4785 123 YDAALEDF 130
djlA PRK09430
co-chaperone DjlA;
380-410 2.72e-04

co-chaperone DjlA;


Pssm-ID: 236512 [Multi-domain]  Cd Length: 267  Bit Score: 42.88  E-value: 2.72e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 17510335  380 DYYKILGVRRNANKREITKAYRK-MAQKwHPD 410
Cdd:PRK09430 201 DAYKVLGVSESDDDQEIKRAYRKlMSEH-HPD 231
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 20-91 3.58e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.56  E-value: 3.58e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17510335  20 DKTEAQREYEAGNALFVNRQYSDALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDF 91
Cdd:COG4783  68 DPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 310-365 9.38e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 9.38e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 17510335 310 EAIQQCTRVLEFDDSDVETLIQRAEAYMADEEYDMAIADYEKAEEWDSSNDAVRTG 365
Cdd:COG4235   1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLD 56
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 306-372 1.04e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 1.04e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17510335 306 GNLGEAIQQCTRVLEFDDSDVETLIQRAEAYMADEEYDMAIADYEKAEEWDSSNDAVRTGKDQAKRA 372
Cdd:COG4235  65 GDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 301-363 1.36e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.56  E-value: 1.36e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17510335 301 CNREDGNLGEAIQQCTRVLEFDDSDVETLIQRAEAYMADEEYDMAIADYEKAEEWDSSNDAVR 363
Cdd:COG5010  63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAY 125
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 42-116 1.54e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.83  E-value: 1.54e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17510335  42 DALTHYHKAIELNPTMYQAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVLLKMGQLERAAADFR 116
Cdd:COG4235   1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLE 75
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 174-359 2.12e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.63  E-value: 2.12e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335 174 DASLYIYRAKCYVAEDKVKSAIHDMKHAAKLSSDNTELLFEMSELEYKVADVRDSLGSIRECLKLNPDhkkcytsykslk 253
Cdd:COG4783   3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD------------ 70

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335 254 kivksldsmkasieqqewtkcletgekllekneEIPIRMNIFRLMcqcnREDGNLGEAIQQCTRVLEFDDSDVETLIQRA 333
Cdd:COG4783  71 ---------------------------------EPEARLNLGLAL----LKAGDYDEALALLEKALKLDPEHPEAYLRLA 113

                       170       180
                ....*....|....*....|....*.
gi 17510335 334 EAYMADEEYDMAIADYEKAEEWDSSN 359
Cdd:COG4783 114 RAYRALGRPDEAIAALEKALELDPDD 139
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
266-358 2.40e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.46  E-value: 2.40e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510335 266 IEQQEWTKCLETGEKLLEKNEEIPirmNIFRLMCQCNREDGNLGEAIQqCTRVLEFDDSDVETLIQRAEAYMADEEYDMA 345
Cdd:COG3063   3 LKLGDLEEAEEYYEKALELDPDNA---DALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEA 78

                        90
                ....*....|...
gi 17510335 346 IADYEKAEEWDSS 358
Cdd:COG3063  79 LAYLERALELDPS 91
TPR_1 pfam00515
Tetratricopeptide repeat;
31-56 2.43e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.47  E-value: 2.43e-03
                          10        20
                  ....*....|....*....|....*.
gi 17510335    31 GNALFVNRQYSDALTHYHKAIELNPT 56
Cdd:pfam00515   8 GNAYFKLGKYDEALEYYEKALELNPN 33
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
300-363 3.77e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 38.74  E-value: 3.77e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17510335 300 QCNREDGNLGEAIQQCTRVLEFDDSDVETLIQRAEAYMADEEYDMAIADYEKAEEWDSSNDAVR 363
Cdd:COG4785  81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAY 144
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 28-99 3.81e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 37.28  E-value: 3.81e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17510335  28 YEAGNALFVNRQYSDALTHYHKAIELNPTMY---QAIFRRATTYLAFGRSKPGLADLDTVLSQKPDFAGARQQRA 99
Cdd:COG1729  34 YWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARA 108
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 306-363 5.37e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.29  E-value: 5.37e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 17510335 306 GNLGEAIQQCTRVLEFDDSDVETLIQRAEAYMADEEYDMAIADYEKAEEWDSSNDAVR 363
Cdd:COG4235  31 GRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEAL 88
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 28-57 7.07e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.34  E-value: 7.07e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 17510335     28 YEAGNALFVNRQYSDALTHYHKAIELNPTM 57
Cdd:smart00028   5 YNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_9 pfam13371
Tetratricopeptide repeat;
68-136 7.69e-03

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 35.27  E-value: 7.69e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17510335    68 YLAFGRSKPGLADLDTVLSQKPDFAGARQQRASVLLKMGQLERAAADFRYLIDHSASQETSQEAQEKLE 136
Cdd:pfam13371   5 YLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDAEAIRELLR 73
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 326-359 9.22e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 33.96  E-value: 9.22e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 17510335    326 VETLIQRAEAYMADEEYDMAIADYEKAEEWDSSN 359
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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