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Conserved domains on  [gi|17511091|ref|NP_491759|]
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Nematode Specific Peptide family, group D [Caenorhabditis elegans]

Protein Classification

DUF780 domain-containing protein( domain architecture ID 6358)

DUF780 domain-containing protein similar to Caenorhabditis elegans Nematode Specific Peptide family, group D

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF780 super family cl05271
Caenorhabditis elegans protein of unknown function (DUF780); This family consists of several ...
 1-70 4.83e-08

Caenorhabditis elegans protein of unknown function (DUF780); This family consists of several short C. elegans proteins of unknown function.


The actual alignment was detected with superfamily member pfam05611:

Pssm-ID: 368521  Cd Length: 71  Bit Score: 44.92  E-value: 4.83e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17511091    1 MADKSAYMGAGGYGSGYMGSNASSSGYAREDYAQ-GGNGGGQQQNQGNGGNTNPGGQVFKARTDQSCYLGP 70
Cdd:pfam05611  1 MADKSAYMSAGGYSSGYMGSNASSSGYAREDYASgGSGGSGCNQNQGSGGNTNPGGQVFKARTDQSCYLGP 71
 
Name Accession Description Interval E-value
DUF780 pfam05611
Caenorhabditis elegans protein of unknown function (DUF780); This family consists of several ...
 1-70 4.83e-08

Caenorhabditis elegans protein of unknown function (DUF780); This family consists of several short C. elegans proteins of unknown function.


Pssm-ID: 368521  Cd Length: 71  Bit Score: 44.92  E-value: 4.83e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17511091    1 MADKSAYMGAGGYGSGYMGSNASSSGYAREDYAQ-GGNGGGQQQNQGNGGNTNPGGQVFKARTDQSCYLGP 70
Cdd:pfam05611  1 MADKSAYMSAGGYSSGYMGSNASSSGYAREDYASgGSGGSGCNQNQGSGGNTNPGGQVFKARTDQSCYLGP 71
 
Name Accession Description Interval E-value
DUF780 pfam05611
Caenorhabditis elegans protein of unknown function (DUF780); This family consists of several ...
 1-70 4.83e-08

Caenorhabditis elegans protein of unknown function (DUF780); This family consists of several short C. elegans proteins of unknown function.


Pssm-ID: 368521  Cd Length: 71  Bit Score: 44.92  E-value: 4.83e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17511091    1 MADKSAYMGAGGYGSGYMGSNASSSGYAREDYAQ-GGNGGGQQQNQGNGGNTNPGGQVFKARTDQSCYLGP 70
Cdd:pfam05611  1 MADKSAYMSAGGYSSGYMGSNASSSGYAREDYASgGSGGSGCNQNQGSGGNTNPGGQVFKARTDQSCYLGP 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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