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Conserved domains on  [gi|392896922|ref|NP_499597|]
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RanBD1 domain-containing protein [Caenorhabditis elegans]

Protein Classification

nucleoporin( domain architecture ID 10614059)

nucleoporin is a component of the nuclear pore complex (NPC) that mediates the selective trafficking of proteins and RNAs through the nuclear envelope

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Nucleoporin_FG pfam13634
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ...
 393-465 1.33e-04

Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.


:

Pssm-ID: 463941 [Multi-domain]  Cd Length: 90  Bit Score: 41.45  E-value: 1.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392896922  393 ASPSEKSGRFGATTTGNSQKSSIFGGNLPPNEP----GFFGVKPPGNAPK----QAEIPAKTTGKPSIFGAN-----SPQ 459
Cdd:pfam13634   5 AATSTSGGLFGNTSTTAASGGGLFGAASTATATtsggGLFGNSSSNAPSGglfgATNTTTQTATGGGLFGNNaatttSTT 84


                  ....*.
gi 392896922  460 TSGFFG 465
Cdd:pfam13634  85 GGGLFG 90
 
Name Accession Description Interval E-value
Nucleoporin_FG pfam13634
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ...
 393-465 1.33e-04

Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.


Pssm-ID: 463941 [Multi-domain]  Cd Length: 90  Bit Score: 41.45  E-value: 1.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392896922  393 ASPSEKSGRFGATTTGNSQKSSIFGGNLPPNEP----GFFGVKPPGNAPK----QAEIPAKTTGKPSIFGAN-----SPQ 459
Cdd:pfam13634   5 AATSTSGGLFGNTSTTAASGGGLFGAASTATATtsggGLFGNSSSNAPSGglfgATNTTTQTATGGGLFGNNaatttSTT 84


                  ....*.
gi 392896922  460 TSGFFG 465
Cdd:pfam13634  85 GGGLFG 90
 
Name Accession Description Interval E-value
Nucleoporin_FG pfam13634
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ...
 393-465 1.33e-04

Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.


Pssm-ID: 463941 [Multi-domain]  Cd Length: 90  Bit Score: 41.45  E-value: 1.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392896922  393 ASPSEKSGRFGATTTGNSQKSSIFGGNLPPNEP----GFFGVKPPGNAPK----QAEIPAKTTGKPSIFGAN-----SPQ 459
Cdd:pfam13634   5 AATSTSGGLFGNTSTTAASGGGLFGAASTATATtsggGLFGNSSSNAPSGglfgATNTTTQTATGGGLFGNNaatttSTT 84


                  ....*.
gi 392896922  460 TSGFFG 465
Cdd:pfam13634  85 GGGLFG 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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