NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|17540232|ref|NP_500431|]
View 

Acyl_transf_3 domain-containing protein [Caenorhabditis elegans]

Protein Classification

acyltransferase family protein( domain architecture ID 15196437)

acyltransferase family protein, containing a SGNH/GDSL hydrolase domain, may catalyze the acylation of various substrates such as peptidoglycan and sugars

EC:  2.3.1.-
Gene Ontology:  GO:0016747

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
OafA COG1835
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains ...
4-364 6.09e-44

Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 441440  Cd Length: 309  Bit Score: 160.19  E-value: 6.09e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232   4 QKPSKRLDLQGIRALAILVVLGFHFYPE--------FFPNGYLGVDQFFVLSGFLMCMLLKRAENQSACSLVTlFYSKRF 75
Cdd:COG1835   3 SSRRRLPSLDGLRGLAALLVVLYHAFLLfppgplggLLSGGFLGVDVFFVLSGFLITRSLLRRLERGGFSLRR-FYLRRF 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232  76 KRilplylliilismiclynFFPdtaietnkesaLHALLFVsnraksvqedyfqmlsiavdIFTHTWSLSVEIQFYFLVP 155
Cdd:COG1835  82 LR------------------IYP-----------AYLVVLL--------------------LTGHLWSLSVELQFYLLFP 112
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232 156 FIFLLSTNIPeKLQYGYYGVIGLISLVY---FYSVPGTVAFNSVFARIWQFMIGMVVYLLgsskptYPHYRVLSNLddee 232
Cdd:COG1835 113 LLLLLLRRLR-RRLLALLALLALASLLLlalLLTGDPSAAYFLTLTRLWEFLLGALLALL------YRRLRRLRRL---- 181
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232 233 edckkllideesqefcpkekfseilkfsqpGAYVGLVILLVITVFPFALPPGFVRPFVTMGTGFLMLLSEDNL----ILS 308
Cdd:COG1835 182 ------------------------------LALAGLALLLAALLLLDGAPFPGFGLLPLLAALLVLAAAAGSGllsrLLS 231
                       330       340       350       360       370       380
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17540232 309 NRILAYIGDISYSLYLIHWPIYAYW-----KLTCNGNQILLAVALASSVILAVITYETFEK 364
Cdd:COG1835 232 SRPLVFLGDISYSLYLWHWPVLVLLlallgRLLGPAPLLLLLLALALSLALAALSYRLVER 292
SGNH pfam19040
SGNH domain (fused to AT3 domains); This entry include SGNH domains that are found fused to ...
440-680 7.29e-20

SGNH domain (fused to AT3 domains); This entry include SGNH domains that are found fused to membrane domains from the AT3 families pfam01757.


:

Pssm-ID: 436916  Cd Length: 245  Bit Score: 89.28  E-value: 7.29e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232   440 CVYESVGT--PLGWCRHTglSKSGKYKMATIGNSWTANHAKMFYQECGRKAKSIMQGAAYGCEPFYPSTQSATCKSNFTD 517
Cdd:pfam19040   2 CLTADPLAgdPLGACRLG--DGAGPPSVLLWGDSHAAALAPGLDEAAKERGVSVLQITRSGCPPLLLRLPDAACAAFNAA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232   518 FEEHIRQ--EKPDYAFIFTR--YISIGAPFAKNVSSFENDEVYLTMKGQMLKLI---SNIKYKLYILDAVPRIVGGAIFR 590
Cdd:pfam19040  80 ILEALALlpSKPDTVVLAARwsLYLEGPAFNDEGIGRDLSNTIAAFAAALRATVaalAAAGKKVVLLGPVPEYVPRNARC 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232   591 IASSLKNGTDPVIldkqLVDFSEYE----MARKRYAQLFQDCNeKCVRVDYVPEFYNNATgTFRYFGERGFSFVTGpmHL 666
Cdd:pfam19040 160 LARAGGLLRDPLC----SIPRAEYRarnaRVNAALDELAAKPG-KVRVIDPSPLFCDDGG-RCSALDGTPLYFDDN--HL 231
                         250
                  ....*....|....
gi 17540232   667 SPHGIEKVRHVWRD 680
Cdd:pfam19040 232 SPAGARLLAPLFAP 245
 
Name Accession Description Interval E-value
OafA COG1835
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains ...
4-364 6.09e-44

Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441440  Cd Length: 309  Bit Score: 160.19  E-value: 6.09e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232   4 QKPSKRLDLQGIRALAILVVLGFHFYPE--------FFPNGYLGVDQFFVLSGFLMCMLLKRAENQSACSLVTlFYSKRF 75
Cdd:COG1835   3 SSRRRLPSLDGLRGLAALLVVLYHAFLLfppgplggLLSGGFLGVDVFFVLSGFLITRSLLRRLERGGFSLRR-FYLRRF 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232  76 KRilplylliilismiclynFFPdtaietnkesaLHALLFVsnraksvqedyfqmlsiavdIFTHTWSLSVEIQFYFLVP 155
Cdd:COG1835  82 LR------------------IYP-----------AYLVVLL--------------------LTGHLWSLSVELQFYLLFP 112
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232 156 FIFLLSTNIPeKLQYGYYGVIGLISLVY---FYSVPGTVAFNSVFARIWQFMIGMVVYLLgsskptYPHYRVLSNLddee 232
Cdd:COG1835 113 LLLLLLRRLR-RRLLALLALLALASLLLlalLLTGDPSAAYFLTLTRLWEFLLGALLALL------YRRLRRLRRL---- 181
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232 233 edckkllideesqefcpkekfseilkfsqpGAYVGLVILLVITVFPFALPPGFVRPFVTMGTGFLMLLSEDNL----ILS 308
Cdd:COG1835 182 ------------------------------LALAGLALLLAALLLLDGAPFPGFGLLPLLAALLVLAAAAGSGllsrLLS 231
                       330       340       350       360       370       380
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17540232 309 NRILAYIGDISYSLYLIHWPIYAYW-----KLTCNGNQILLAVALASSVILAVITYETFEK 364
Cdd:COG1835 232 SRPLVFLGDISYSLYLWHWPVLVLLlallgRLLGPAPLLLLLLALALSLALAALSYRLVER 292
SGNH pfam19040
SGNH domain (fused to AT3 domains); This entry include SGNH domains that are found fused to ...
440-680 7.29e-20

SGNH domain (fused to AT3 domains); This entry include SGNH domains that are found fused to membrane domains from the AT3 families pfam01757.


Pssm-ID: 436916  Cd Length: 245  Bit Score: 89.28  E-value: 7.29e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232   440 CVYESVGT--PLGWCRHTglSKSGKYKMATIGNSWTANHAKMFYQECGRKAKSIMQGAAYGCEPFYPSTQSATCKSNFTD 517
Cdd:pfam19040   2 CLTADPLAgdPLGACRLG--DGAGPPSVLLWGDSHAAALAPGLDEAAKERGVSVLQITRSGCPPLLLRLPDAACAAFNAA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232   518 FEEHIRQ--EKPDYAFIFTR--YISIGAPFAKNVSSFENDEVYLTMKGQMLKLI---SNIKYKLYILDAVPRIVGGAIFR 590
Cdd:pfam19040  80 ILEALALlpSKPDTVVLAARwsLYLEGPAFNDEGIGRDLSNTIAAFAAALRATVaalAAAGKKVVLLGPVPEYVPRNARC 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232   591 IASSLKNGTDPVIldkqLVDFSEYE----MARKRYAQLFQDCNeKCVRVDYVPEFYNNATgTFRYFGERGFSFVTGpmHL 666
Cdd:pfam19040 160 LARAGGLLRDPLC----SIPRAEYRarnaRVNAALDELAAKPG-KVRVIDPSPLFCDDGG-RCSALDGTPLYFDDN--HL 231
                         250
                  ....*....|....
gi 17540232   667 SPHGIEKVRHVWRD 680
Cdd:pfam19040 232 SPAGARLLAPLFAP 245
Acyl_transf_3 pfam01757
Acyltransferase family; This family includes a range of acyltransferase enzymes. This domain ...
9-360 4.20e-13

Acyltransferase family; This family includes a range of acyltransferase enzymes. This domain is found in a wide range of acyltransferase enzymes, including, mainly, bacterial proteins which catalyze the transfer of acyl groups, other than amino-acyl, from one compound to another, such as Glucans biosynthesis protein C (OPGC) or protein OatA from Listeria monocytogenes serovar 1/2a and Staphylococcus aureus, an integral membrane protein which is responsible for O-acetylation at the C6-hydroxyl group of N-acetylmuramyl residues, forming the corresponding N,6-O-diacetylmuramic acid of the peptidoglycan, a modification that determines lysozyme resistance. This domain is also present in eukaryotic proteins, namely O-acyltransferase like protein (OACYL) from mouse and RHY1 (Regulator of hypoxia-inducible factor 1) and NRF6 (Nose resistant to fluoxetine protein 6) from Caenorhabditis elegans.


Pssm-ID: 426413 [Multi-domain]  Cd Length: 330  Bit Score: 71.04  E-value: 4.20e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232     9 RLDLQGIRALAILVVLGFHFYPEFFPNGYL----------------GVDQFFVLSGFLMCMLLKRAENqsacslVTLFYS 72
Cdd:pfam01757   1 IAYLDLLRGIAILLVVIGHVLLAFGYGGFGlplelallflvflgrfGVPLFFFISGYLLAALRRRRRS------LFKFIK 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232    73 KRFKRILPLYLLIILIsmiclYNFFPDTAIETNKESALHALLFVSNRAksvqedyfqmlSIAVDIFTHTWSLSVEIQFYF 152
Cdd:pfam01757  75 KRLLRLLIPYLLWSLL-----YALLLLLVAGLSVGGALLLLLLLNNGP-----------LFFLGVNGHLWFLSALFVFYL 138
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232   153 LVPFIFLLSTNIPEKLQYGYYGVIGLISLVYFYS----VPGTVAFNSVFARIWQFMIGMVVYLLGsskptyphyrvlsnl 228
Cdd:pfam01757 139 LLPLLLRLLRKLKKSLLLLLLLLLLLLFLLYILIllvgVPFTVLVLFIFLYLPFFLLGALLARYR--------------- 203
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232   229 ddeeedckkllideesqefcpKEKFSEILKFSqPGAYVGLVILLVITVFPFALPPGFVRP-----------FVTMGTGFL 297
Cdd:pfam01757 204 ---------------------KRIRSKRLKLL-IIILLALALLALILLLLFLFGLDPLALefygypsllllLLGILLLLL 261
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17540232   298 MLLSEDNLILSNRILAYIGDISYSLYLIHWPIYAYWK------LTCNGNQILLAVALASSVILAVITYE 360
Cdd:pfam01757 262 LALLLANLRSLRRLLSYLGKYSFGIYLIHPPILLLLGkllgllGLPLLPILLFLLLLVLTLLVSVLLAR 330
 
Name Accession Description Interval E-value
OafA COG1835
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains ...
4-364 6.09e-44

Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441440  Cd Length: 309  Bit Score: 160.19  E-value: 6.09e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232   4 QKPSKRLDLQGIRALAILVVLGFHFYPE--------FFPNGYLGVDQFFVLSGFLMCMLLKRAENQSACSLVTlFYSKRF 75
Cdd:COG1835   3 SSRRRLPSLDGLRGLAALLVVLYHAFLLfppgplggLLSGGFLGVDVFFVLSGFLITRSLLRRLERGGFSLRR-FYLRRF 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232  76 KRilplylliilismiclynFFPdtaietnkesaLHALLFVsnraksvqedyfqmlsiavdIFTHTWSLSVEIQFYFLVP 155
Cdd:COG1835  82 LR------------------IYP-----------AYLVVLL--------------------LTGHLWSLSVELQFYLLFP 112
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232 156 FIFLLSTNIPeKLQYGYYGVIGLISLVY---FYSVPGTVAFNSVFARIWQFMIGMVVYLLgsskptYPHYRVLSNLddee 232
Cdd:COG1835 113 LLLLLLRRLR-RRLLALLALLALASLLLlalLLTGDPSAAYFLTLTRLWEFLLGALLALL------YRRLRRLRRL---- 181
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232 233 edckkllideesqefcpkekfseilkfsqpGAYVGLVILLVITVFPFALPPGFVRPFVTMGTGFLMLLSEDNL----ILS 308
Cdd:COG1835 182 ------------------------------LALAGLALLLAALLLLDGAPFPGFGLLPLLAALLVLAAAAGSGllsrLLS 231
                       330       340       350       360       370       380
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17540232 309 NRILAYIGDISYSLYLIHWPIYAYW-----KLTCNGNQILLAVALASSVILAVITYETFEK 364
Cdd:COG1835 232 SRPLVFLGDISYSLYLWHWPVLVLLlallgRLLGPAPLLLLLLALALSLALAALSYRLVER 292
SGNH pfam19040
SGNH domain (fused to AT3 domains); This entry include SGNH domains that are found fused to ...
440-680 7.29e-20

SGNH domain (fused to AT3 domains); This entry include SGNH domains that are found fused to membrane domains from the AT3 families pfam01757.


Pssm-ID: 436916  Cd Length: 245  Bit Score: 89.28  E-value: 7.29e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232   440 CVYESVGT--PLGWCRHTglSKSGKYKMATIGNSWTANHAKMFYQECGRKAKSIMQGAAYGCEPFYPSTQSATCKSNFTD 517
Cdd:pfam19040   2 CLTADPLAgdPLGACRLG--DGAGPPSVLLWGDSHAAALAPGLDEAAKERGVSVLQITRSGCPPLLLRLPDAACAAFNAA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232   518 FEEHIRQ--EKPDYAFIFTR--YISIGAPFAKNVSSFENDEVYLTMKGQMLKLI---SNIKYKLYILDAVPRIVGGAIFR 590
Cdd:pfam19040  80 ILEALALlpSKPDTVVLAARwsLYLEGPAFNDEGIGRDLSNTIAAFAAALRATVaalAAAGKKVVLLGPVPEYVPRNARC 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232   591 IASSLKNGTDPVIldkqLVDFSEYE----MARKRYAQLFQDCNeKCVRVDYVPEFYNNATgTFRYFGERGFSFVTGpmHL 666
Cdd:pfam19040 160 LARAGGLLRDPLC----SIPRAEYRarnaRVNAALDELAAKPG-KVRVIDPSPLFCDDGG-RCSALDGTPLYFDDN--HL 231
                         250
                  ....*....|....
gi 17540232   667 SPHGIEKVRHVWRD 680
Cdd:pfam19040 232 SPAGARLLAPLFAP 245
Acyl_transf_3 pfam01757
Acyltransferase family; This family includes a range of acyltransferase enzymes. This domain ...
9-360 4.20e-13

Acyltransferase family; This family includes a range of acyltransferase enzymes. This domain is found in a wide range of acyltransferase enzymes, including, mainly, bacterial proteins which catalyze the transfer of acyl groups, other than amino-acyl, from one compound to another, such as Glucans biosynthesis protein C (OPGC) or protein OatA from Listeria monocytogenes serovar 1/2a and Staphylococcus aureus, an integral membrane protein which is responsible for O-acetylation at the C6-hydroxyl group of N-acetylmuramyl residues, forming the corresponding N,6-O-diacetylmuramic acid of the peptidoglycan, a modification that determines lysozyme resistance. This domain is also present in eukaryotic proteins, namely O-acyltransferase like protein (OACYL) from mouse and RHY1 (Regulator of hypoxia-inducible factor 1) and NRF6 (Nose resistant to fluoxetine protein 6) from Caenorhabditis elegans.


Pssm-ID: 426413 [Multi-domain]  Cd Length: 330  Bit Score: 71.04  E-value: 4.20e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232     9 RLDLQGIRALAILVVLGFHFYPEFFPNGYL----------------GVDQFFVLSGFLMCMLLKRAENqsacslVTLFYS 72
Cdd:pfam01757   1 IAYLDLLRGIAILLVVIGHVLLAFGYGGFGlplelallflvflgrfGVPLFFFISGYLLAALRRRRRS------LFKFIK 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232    73 KRFKRILPLYLLIILIsmiclYNFFPDTAIETNKESALHALLFVSNRAksvqedyfqmlSIAVDIFTHTWSLSVEIQFYF 152
Cdd:pfam01757  75 KRLLRLLIPYLLWSLL-----YALLLLLVAGLSVGGALLLLLLLNNGP-----------LFFLGVNGHLWFLSALFVFYL 138
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232   153 LVPFIFLLSTNIPEKLQYGYYGVIGLISLVYFYS----VPGTVAFNSVFARIWQFMIGMVVYLLGsskptyphyrvlsnl 228
Cdd:pfam01757 139 LLPLLLRLLRKLKKSLLLLLLLLLLLLFLLYILIllvgVPFTVLVLFIFLYLPFFLLGALLARYR--------------- 203
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232   229 ddeeedckkllideesqefcpKEKFSEILKFSqPGAYVGLVILLVITVFPFALPPGFVRP-----------FVTMGTGFL 297
Cdd:pfam01757 204 ---------------------KRIRSKRLKLL-IIILLALALLALILLLLFLFGLDPLALefygypsllllLLGILLLLL 261
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17540232   298 MLLSEDNLILSNRILAYIGDISYSLYLIHWPIYAYWK------LTCNGNQILLAVALASSVILAVITYE 360
Cdd:pfam01757 262 LALLLANLRSLRRLLSYLGKYSFGIYLIHPPILLLLGkllgllGLPLLPILLFLLLLVLTLLVSVLLAR 330
WecH COG3274
Surface polysaccharide O-acyltransferase WecH [Cell wall/membrane/envelope biogenesis];
1-359 4.50e-03

Surface polysaccharide O-acyltransferase WecH [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442505 [Multi-domain]  Cd Length: 345  Bit Score: 39.97  E-value: 4.50e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232   1 MNEQKPSKRLDLQGIRALAILVVLGFHFYPEFFPN------------------GYLGVDQFFVLSGFLMcmLLKRAENQS 62
Cdd:COG3274   1 MPSSKKKRIVYLDLLRVLAIFAVVLIHVTAPFVSSpgligslnwwvanlldslSRFAVPLFFMISGALL--LDRKKEDLK 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232  63 AcslvtlFYSKRFKRilplylliilisMICLYNFFpdtaietnkeSALHALLFVSNRAKSVQEDYFQMLSIAV-DIFTHT 141
Cdd:COG3274  79 D------FYKKRLRR------------ILIPLLFW----------SLIYLLFFTFLGGFSFNSLSEFLKNLLTgGVSYHL 130
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232 142 WSLSVEIQFYFLVPFIFLLSTNIPEKLQYgYYGVIGLISLVYFYSVPGTVAFNSVFAriWQFMIGMVVY-LLGsskptyp 220
Cdd:COG3274 131 WFLYMIIGLYLFTPLLRKLVRKASKRELL-YFLLLWLILSLLLPYLNTLLGIDLFFT--LTLFLGYLGYfLLG------- 200
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540232 221 hyRVLSNLddeeedckkllideesqefcpKEKFSEILKFSQPGAYVGLVILLVITVF-------PFALPPGFVRPFVTMG 293
Cdd:COG3274 201 --YYLARY---------------------KARLKKRRLIALLLFLVGLALTFLGTYLlslqtgkFNELFYSYLSPNVVLM 257
                       330       340       350       360       370       380       390
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17540232 294 TGFLMLLSEDNLILS---NRILAYIGDISYSLYLIH----WPIYAYWKLTCNGNQIL--LAVALASSVILAVITY 359
Cdd:COG3274 258 SVALFLLLKNLSFRSsklSRLLSRLSKYSFGIYLIHplvlDLLTKLGLNLLNINPLLgiPLVALLTFVLSLLIVL 332
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH