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Conserved domains on  [gi|71995927|ref|NP_501619|]
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FLYWCH transcription factor 3 [Caenorhabditis elegans]

Protein Classification

FLYWCH zinc finger domain-containing protein( domain architecture ID 10517393)

FLYWCH zinc finger domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FLYWCH pfam04500
FLYWCH zinc finger domain; Mutations in the mod(mdg4) gene have effects on variegation (PEV), ...
 135-195 4.18e-15

FLYWCH zinc finger domain; Mutations in the mod(mdg4) gene have effects on variegation (PEV), the properties of insulator sequences, correct path-finding of growing nerve cells, meiotic pairing of chromosomes, and apoptosis. The occurrence of FLYWCH motifs in mod(mdg4) gene product and other proteins is discussed in.


:

Pssm-ID: 461332  Cd Length: 62  Bit Score: 69.29  E-value: 4.18e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 71995927   135 YTPRGIRERVLFDEHLYVFDKCSydSKKRFFRCERKNT--CPARIHTPFDAERVIHKVQVHNH 195
Cdd:pfam04500   2 VRSRRGRPKLVINGYLYTRNKKS--GGKIYWRCSQYRKikCKARVVTDRGGTRVKVTRGEHNH 62
 
Name Accession Description Interval E-value
FLYWCH pfam04500
FLYWCH zinc finger domain; Mutations in the mod(mdg4) gene have effects on variegation (PEV), ...
 135-195 4.18e-15

FLYWCH zinc finger domain; Mutations in the mod(mdg4) gene have effects on variegation (PEV), the properties of insulator sequences, correct path-finding of growing nerve cells, meiotic pairing of chromosomes, and apoptosis. The occurrence of FLYWCH motifs in mod(mdg4) gene product and other proteins is discussed in.


Pssm-ID: 461332  Cd Length: 62  Bit Score: 69.29  E-value: 4.18e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 71995927   135 YTPRGIRERVLFDEHLYVFDKCSydSKKRFFRCERKNT--CPARIHTPFDAERVIHKVQVHNH 195
Cdd:pfam04500   2 VRSRRGRPKLVINGYLYTRNKKS--GGKIYWRCSQYRKikCKARVVTDRGGTRVKVTRGEHNH 62
 
Name Accession Description Interval E-value
FLYWCH pfam04500
FLYWCH zinc finger domain; Mutations in the mod(mdg4) gene have effects on variegation (PEV), ...
 135-195 4.18e-15

FLYWCH zinc finger domain; Mutations in the mod(mdg4) gene have effects on variegation (PEV), the properties of insulator sequences, correct path-finding of growing nerve cells, meiotic pairing of chromosomes, and apoptosis. The occurrence of FLYWCH motifs in mod(mdg4) gene product and other proteins is discussed in.


Pssm-ID: 461332  Cd Length: 62  Bit Score: 69.29  E-value: 4.18e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 71995927   135 YTPRGIRERVLFDEHLYVFDKCSydSKKRFFRCERKNT--CPARIHTPFDAERVIHKVQVHNH 195
Cdd:pfam04500   2 VRSRRGRPKLVINGYLYTRNKKS--GGKIYWRCSQYRKikCKARVVTDRGGTRVKVTRGEHNH 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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