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Conserved domains on  [gi|149158690|ref|NP_542417|]
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protein PRRC2A [Homo sapiens]

Protein Classification

PRCC domain-containing protein( domain architecture ID 10537006)

proline-rich coiled-coil (PRCC) domain-containing protein such as human proline-rich coiled-coil 2A protein (PRRC2A) that may play a role in the regulation of pre-mRNA splicing

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
BAT2_N pfam07001
BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the ...
2-189 1.72e-69

BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin.


:

Pssm-ID: 462063 [Multi-domain]  Cd Length: 190  Bit Score: 232.07  E-value: 1.72e-69
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149158690     2 SDRSGPTAKGKDGK-KYSSLNLFDTYKGKSLEIQK-PAVAPR-HGLQSLGKVAIARRmpPPANLPSLKAENKGNDPNVSL 78
Cdd:pfam07001    1 SSTLGQSRKEKDGKpKYTALDINRTYKGESLEPSKqKNVVPRkHGMQSLGKVPSARR--PPANLPSLKAENKGNDPNVSL 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149158690    79 VPKDGTGWASKQEQSDPKSSDASTAQPPESQPLPASQTPASNQPKRPPAAPE-NTPLVPSGVKSWAQASVTHGAHGDGGR 157
Cdd:pfam07001   79 VPKDGSGWASKQETPSPKSSQALAAVQPEAQQPPGSGTSGSNTSPGNPTAHEgPAGTSAAGGKSWAQASTTAGSQGGGGK 158
                          170       180       190
                   ....*....|....*....|....*....|..
gi 149158690   158 ASSLLSRFSREEFPTLQAAGDQDKAAKERESA 189
Cdd:pfam07001  159 GSNQLSPFSQEEFPTLQAAGDQDKSGKENNTA 190
 
Name Accession Description Interval E-value
BAT2_N pfam07001
BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the ...
2-189 1.72e-69

BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin.


Pssm-ID: 462063 [Multi-domain]  Cd Length: 190  Bit Score: 232.07  E-value: 1.72e-69
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149158690     2 SDRSGPTAKGKDGK-KYSSLNLFDTYKGKSLEIQK-PAVAPR-HGLQSLGKVAIARRmpPPANLPSLKAENKGNDPNVSL 78
Cdd:pfam07001    1 SSTLGQSRKEKDGKpKYTALDINRTYKGESLEPSKqKNVVPRkHGMQSLGKVPSARR--PPANLPSLKAENKGNDPNVSL 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149158690    79 VPKDGTGWASKQEQSDPKSSDASTAQPPESQPLPASQTPASNQPKRPPAAPE-NTPLVPSGVKSWAQASVTHGAHGDGGR 157
Cdd:pfam07001   79 VPKDGSGWASKQETPSPKSSQALAAVQPEAQQPPGSGTSGSNTSPGNPTAHEgPAGTSAAGGKSWAQASTTAGSQGGGGK 158
                          170       180       190
                   ....*....|....*....|....*....|..
gi 149158690   158 ASSLLSRFSREEFPTLQAAGDQDKAAKERESA 189
Cdd:pfam07001  159 GSNQLSPFSQEEFPTLQAAGDQDKSGKENNTA 190
 
Name Accession Description Interval E-value
BAT2_N pfam07001
BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the ...
2-189 1.72e-69

BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin.


Pssm-ID: 462063 [Multi-domain]  Cd Length: 190  Bit Score: 232.07  E-value: 1.72e-69
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149158690     2 SDRSGPTAKGKDGK-KYSSLNLFDTYKGKSLEIQK-PAVAPR-HGLQSLGKVAIARRmpPPANLPSLKAENKGNDPNVSL 78
Cdd:pfam07001    1 SSTLGQSRKEKDGKpKYTALDINRTYKGESLEPSKqKNVVPRkHGMQSLGKVPSARR--PPANLPSLKAENKGNDPNVSL 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149158690    79 VPKDGTGWASKQEQSDPKSSDASTAQPPESQPLPASQTPASNQPKRPPAAPE-NTPLVPSGVKSWAQASVTHGAHGDGGR 157
Cdd:pfam07001   79 VPKDGSGWASKQETPSPKSSQALAAVQPEAQQPPGSGTSGSNTSPGNPTAHEgPAGTSAAGGKSWAQASTTAGSQGGGGK 158
                          170       180       190
                   ....*....|....*....|....*....|..
gi 149158690   158 ASSLLSRFSREEFPTLQAAGDQDKAAKERESA 189
Cdd:pfam07001  159 GSNQLSPFSQEEFPTLQAAGDQDKSGKENNTA 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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