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Conserved domains on  [gi|19114939|ref|NP_594027|]
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diphosphomevalonate decarboxylase [Schizosaccharomyces pombe]

Protein Classification

diphosphomevalonate/mevalonate 3,5-bisphosphate decarboxylase family protein( domain architecture ID 706585)

diphosphomevalonate/mevalonate 3,5-bisphosphate decarboxylase family protein similar to diphosphomevalonate decarboxylase (DMD) that catalyzes the decarboxylation of mevalonate 5-diphosphate (MVAPP) to isopentenyl diphosphate (IPP), and mevalonate 3,5-bisphosphate decarboxylase (MBD) that catalyzes the ATP-independent decarboxylation of (R)-mevalonate 3,5-bisphosphate to isopentenyl phosphate

EC:  4.1.1.-
Gene Ontology:  GO:0016831|GO:0008299
PubMed:  8382990|7947744|31268677

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MDD_C super family cl28577
Mevalonate 5-diphosphate decarboxylase C-terminal domain; Mevalonate diphosphate decarboxylase ...
 5-316 2.98e-135

Mevalonate 5-diphosphate decarboxylase C-terminal domain; Mevalonate diphosphate decarboxylase (EC:4.1.1.33) catalyzes the ATP dependent decarboxylation of mevalonate 5-diphosphate (MVAPP) to form isopentenyl 5-diphosphate. The reaction is required for production of polyisoprenoids and sterols from acetyl-CoA. This entry represents the C-terminal domain of the mevalonate 5-diphosphate decarboxylase enzyme which is a member of the GHMP kinase superfamily.


The actual alignment was detected with superfamily member PLN02407:

Pssm-ID: 475042  Cd Length: 343  Bit Score: 390.31  E-value: 2.98e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939    5 VYQCTVSAPVNIAVIKYWGKRDVALNLPTNSSISVTLSQDDLRTVTTASCSEKFENDTLWLNGNaEEIFANKRLRVCVEE 84
Cdd:PLN02407   1 VVMVTAQAPTNIAVIKYWGKRDEKLILPINSSISVTLDPDHLCATTTVAVSPSFDQDRLWLNGK-EISLSGGRYQNCLRE 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939   85 LRKARLDLEEENDDLdKI-----GALKLHVVSENNFPTAAGLASSAAGYAAFCEAIARLYDLPWT-PTQLSRIARQGSGS 158
Cdd:PLN02407  80 IRARATDVEDEEKGI-KItkkdwEKLHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDfPGELSAIARQGSGS 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939  159 ACRSLFGGYVAWEMGELHSGADSVAVQVEPVENWPEIRVAVLVASAAKKGVSSTAGMQATVASSTLFQHRIQNIVPQRIQ 238
Cdd:PLN02407 159 ACRSLYGGFVKWNMGKKEDGSDSIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSPLLQHRAKEVVPKRIL 238

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 19114939  239 EMKTAIRERDFETFAKLTMTDSNQFHACCLDTFPPIFYLNDTSRAVIRVVENINATAGKTIAAYTFDAGPNAVIYFLE 316
Cdd:PLN02407 239 QMEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTFDAGPNAVLIALN 316
 
Name Accession Description Interval E-value
PLN02407 PLN02407
diphosphomevalonate decarboxylase
 5-316 2.98e-135

diphosphomevalonate decarboxylase


Pssm-ID: 178029  Cd Length: 343  Bit Score: 390.31  E-value: 2.98e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939    5 VYQCTVSAPVNIAVIKYWGKRDVALNLPTNSSISVTLSQDDLRTVTTASCSEKFENDTLWLNGNaEEIFANKRLRVCVEE 84
Cdd:PLN02407   1 VVMVTAQAPTNIAVIKYWGKRDEKLILPINSSISVTLDPDHLCATTTVAVSPSFDQDRLWLNGK-EISLSGGRYQNCLRE 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939   85 LRKARLDLEEENDDLdKI-----GALKLHVVSENNFPTAAGLASSAAGYAAFCEAIARLYDLPWT-PTQLSRIARQGSGS 158
Cdd:PLN02407  80 IRARATDVEDEEKGI-KItkkdwEKLHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDfPGELSAIARQGSGS 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939  159 ACRSLFGGYVAWEMGELHSGADSVAVQVEPVENWPEIRVAVLVASAAKKGVSSTAGMQATVASSTLFQHRIQNIVPQRIQ 238
Cdd:PLN02407 159 ACRSLYGGFVKWNMGKKEDGSDSIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSPLLQHRAKEVVPKRIL 238

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 19114939  239 EMKTAIRERDFETFAKLTMTDSNQFHACCLDTFPPIFYLNDTSRAVIRVVENINATAGKTIAAYTFDAGPNAVIYFLE 316
Cdd:PLN02407 239 QMEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTFDAGPNAVLIALN 316
mevDPdecarb TIGR01240
diphosphomevalonate decarboxylase; This enzyme catalyzes the last step in the synthesis of ...
 9-327 1.43e-107

diphosphomevalonate decarboxylase; This enzyme catalyzes the last step in the synthesis of isopentenyl diphosphate (IPP) in the mevalonate pathway. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase [Central intermediary metabolism, Other]


Pssm-ID: 130307  Cd Length: 305  Bit Score: 318.43  E-value: 1.43e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939     9 TVSAPVNIAVIKYWGKRDVALNLPTNSSISVTLSQddLRTVTTASCSEKFENDTLWLNGNAEEIFANKRLRVCVEELRKA 88
Cdd:TIGR01240   2 SVTAYVNIATIKYWGKRNTKLNLPTNSSISLTLSQ--LRTLTSVAFADEFERDTFYLNGTLQHSIDNEKTSNCLDDFRQL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939    89 RLDleeenddldkigALKLHVVSENNFPTAAGLASSAAGYAAFCEAIARLYDLPWTPTQLSRIARQGSGSACRSLFGGYV 168
Cdd:TIGR01240  80 RKE------------QEKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGSGSACRSLFGGYV 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939   169 AWEMGelHSGADSVAVQVEPVENWPEIRVAVLVASAAKKGVSSTAGMQATVASSTLFQHRIQNIVPQrIQEMKTAIRERD 248
Cdd:TIGR01240 148 AWEKG--KDDHSSAAVQVADDSDWPQ*AMCVLVVNDIKKDVSSRQGMQLTVATSELFKEWIEHVVPD-FEV*RKAIKTKD 224

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 19114939   249 FETFAKLTMTDSNQFHACCLDTFPPIFYLNDTSRAVIRVVENINatAGKTIAAYTFDAGPNAVIYFLEENSEIVLNTLY 327
Cdd:TIGR01240 225 FATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLR--QGGTICYFTMDAGPNVKVLYLAENLSKLFEFIY 301
MDD_C pfam18376
Mevalonate 5-diphosphate decarboxylase C-terminal domain; Mevalonate diphosphate decarboxylase ...
 197-374 7.62e-93

Mevalonate 5-diphosphate decarboxylase C-terminal domain; Mevalonate diphosphate decarboxylase (EC:4.1.1.33) catalyzes the ATP dependent decarboxylation of mevalonate 5-diphosphate (MVAPP) to form isopentenyl 5-diphosphate. The reaction is required for production of polyisoprenoids and sterols from acetyl-CoA. This entry represents the C-terminal domain of the mevalonate 5-diphosphate decarboxylase enzyme which is a member of the GHMP kinase superfamily.


Pssm-ID: 465732  Cd Length: 186  Bit Score: 276.36  E-value: 7.62e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939   197 VAVLVASAAKKGVSSTAGMQATVASSTLFQHRIQNIVPQRIQEMKTAIRERDFETFAKLTMTDSNQFHACCLDTFPPIFY 276
Cdd:pfam18376   1 VLILVVSDEKKEVSSTSGMQRSVETSPLLKHRAEHVVPERMEAMEKAILAKDFETFAEITMKDSNQFHAVCLDTYPPIFY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939   277 LNDTSRAVIRVVENINATAGKTIAAYTFDAGPNAVIYFLEENSEIVLNTLYAVTKNAEGWSKQYGSSPVTVDSAAANIVS 356
Cdd:pfam18376  81 LNDTSRAIIQLVHAYNEFAGRIKVAYTFDAGPNAVLYLLEKDVPKVLSLLKHFFPPSTNGDQFFKGLPVLPSELSEELKA 160

                         170       180
                  ....*....|....*....|....*.
gi 19114939   357 S--------GISRVILTRVGNGPRVL 374
Cdd:pfam18376 161 SlamkpipgGVKYIIHTKVGDGPRVL 186
MVD1 COG3407
Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]; Mevalonate ...
 9-334 2.61e-87

Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]; Mevalonate pyrophosphate decarboxylase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


Pssm-ID: 442633  Cd Length: 322  Bit Score: 267.44  E-value: 2.61e-87
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939   9 TVSAPVNIAVIKYWGKRDVALNLPTNSSISVTLsqDDLRTVTTASCSEKFENDTLWLNGNAEEIfankrlrvcvEELRKA 88
Cdd:COG3407   7 TARAHSNIALIKYWGKRDEELNLPANPSLSLTL--DAFYTTTTVEFDKDLAEDEFILNGEPQKG----------KFLPKI 74

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939  89 R--LDL-EEENDdldkiGALKLHVVSENNFPTAAGLASSAAGYAAFCEAIARLYDLPWTPTQLSRIARQGSGSACRSLFG 165
Cdd:COG3407  75 SkfLDRvRALAG-----KSYHARIESENNFPTAAGLASSASGFAALALAANSAEGLDLDDRKLSRLARLGSGSACRSIFG 149

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939 166 GYVAWEMGELHsgADSVAVQVEPvENWPeIRVAVLVASAAKKGVSSTAGMQaTVASSTLFQHRIQNiVPQRIQEMKTAIR 245
Cdd:COG3407 150 GFVEWGKGEDD--EDSYAVPIPA-EDWD-LADIILVVDKGEKKVSSREGMK-TAETSPFYPAWVEQ-AEEDLEKLKEAIK 223

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939 246 ERDFETFAKLTMTDSNQFHACCLDTFPPIFYLNDTSRAVIRVVENINatAGKTIAAYTFDAGPNAVIYFLEENSEIVLNT 325
Cdd:COG3407 224 AGDFEALGEIAESNALRMHATMMTSNPPFIYWKPNTLEVINAVRELR--EEGLPVYFTLDAGPNVKVLCPEEDAEKVAAF 301


                ....*....
gi 19114939 326 LYAVTKNAE 334
Cdd:COG3407 302 LAAELVNGQ 310
 
Name Accession Description Interval E-value
PLN02407 PLN02407
diphosphomevalonate decarboxylase
 5-316 2.98e-135

diphosphomevalonate decarboxylase


Pssm-ID: 178029  Cd Length: 343  Bit Score: 390.31  E-value: 2.98e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939    5 VYQCTVSAPVNIAVIKYWGKRDVALNLPTNSSISVTLSQDDLRTVTTASCSEKFENDTLWLNGNaEEIFANKRLRVCVEE 84
Cdd:PLN02407   1 VVMVTAQAPTNIAVIKYWGKRDEKLILPINSSISVTLDPDHLCATTTVAVSPSFDQDRLWLNGK-EISLSGGRYQNCLRE 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939   85 LRKARLDLEEENDDLdKI-----GALKLHVVSENNFPTAAGLASSAAGYAAFCEAIARLYDLPWT-PTQLSRIARQGSGS 158
Cdd:PLN02407  80 IRARATDVEDEEKGI-KItkkdwEKLHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDfPGELSAIARQGSGS 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939  159 ACRSLFGGYVAWEMGELHSGADSVAVQVEPVENWPEIRVAVLVASAAKKGVSSTAGMQATVASSTLFQHRIQNIVPQRIQ 238
Cdd:PLN02407 159 ACRSLYGGFVKWNMGKKEDGSDSIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSPLLQHRAKEVVPKRIL 238

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 19114939  239 EMKTAIRERDFETFAKLTMTDSNQFHACCLDTFPPIFYLNDTSRAVIRVVENINATAGKTIAAYTFDAGPNAVIYFLE 316
Cdd:PLN02407 239 QMEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTFDAGPNAVLIALN 316
mevDPdecarb TIGR01240
diphosphomevalonate decarboxylase; This enzyme catalyzes the last step in the synthesis of ...
 9-327 1.43e-107

diphosphomevalonate decarboxylase; This enzyme catalyzes the last step in the synthesis of isopentenyl diphosphate (IPP) in the mevalonate pathway. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase [Central intermediary metabolism, Other]


Pssm-ID: 130307  Cd Length: 305  Bit Score: 318.43  E-value: 1.43e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939     9 TVSAPVNIAVIKYWGKRDVALNLPTNSSISVTLSQddLRTVTTASCSEKFENDTLWLNGNAEEIFANKRLRVCVEELRKA 88
Cdd:TIGR01240   2 SVTAYVNIATIKYWGKRNTKLNLPTNSSISLTLSQ--LRTLTSVAFADEFERDTFYLNGTLQHSIDNEKTSNCLDDFRQL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939    89 RLDleeenddldkigALKLHVVSENNFPTAAGLASSAAGYAAFCEAIARLYDLPWTPTQLSRIARQGSGSACRSLFGGYV 168
Cdd:TIGR01240  80 RKE------------QEKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGSGSACRSLFGGYV 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939   169 AWEMGelHSGADSVAVQVEPVENWPEIRVAVLVASAAKKGVSSTAGMQATVASSTLFQHRIQNIVPQrIQEMKTAIRERD 248
Cdd:TIGR01240 148 AWEKG--KDDHSSAAVQVADDSDWPQ*AMCVLVVNDIKKDVSSRQGMQLTVATSELFKEWIEHVVPD-FEV*RKAIKTKD 224

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 19114939   249 FETFAKLTMTDSNQFHACCLDTFPPIFYLNDTSRAVIRVVENINatAGKTIAAYTFDAGPNAVIYFLEENSEIVLNTLY 327
Cdd:TIGR01240 225 FATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLR--QGGTICYFTMDAGPNVKVLYLAENLSKLFEFIY 301
MDD_C pfam18376
Mevalonate 5-diphosphate decarboxylase C-terminal domain; Mevalonate diphosphate decarboxylase ...
 197-374 7.62e-93

Mevalonate 5-diphosphate decarboxylase C-terminal domain; Mevalonate diphosphate decarboxylase (EC:4.1.1.33) catalyzes the ATP dependent decarboxylation of mevalonate 5-diphosphate (MVAPP) to form isopentenyl 5-diphosphate. The reaction is required for production of polyisoprenoids and sterols from acetyl-CoA. This entry represents the C-terminal domain of the mevalonate 5-diphosphate decarboxylase enzyme which is a member of the GHMP kinase superfamily.


Pssm-ID: 465732  Cd Length: 186  Bit Score: 276.36  E-value: 7.62e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939   197 VAVLVASAAKKGVSSTAGMQATVASSTLFQHRIQNIVPQRIQEMKTAIRERDFETFAKLTMTDSNQFHACCLDTFPPIFY 276
Cdd:pfam18376   1 VLILVVSDEKKEVSSTSGMQRSVETSPLLKHRAEHVVPERMEAMEKAILAKDFETFAEITMKDSNQFHAVCLDTYPPIFY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939   277 LNDTSRAVIRVVENINATAGKTIAAYTFDAGPNAVIYFLEENSEIVLNTLYAVTKNAEGWSKQYGSSPVTVDSAAANIVS 356
Cdd:pfam18376  81 LNDTSRAIIQLVHAYNEFAGRIKVAYTFDAGPNAVLYLLEKDVPKVLSLLKHFFPPSTNGDQFFKGLPVLPSELSEELKA 160

                         170       180
                  ....*....|....*....|....*.
gi 19114939   357 S--------GISRVILTRVGNGPRVL 374
Cdd:pfam18376 161 SlamkpipgGVKYIIHTKVGDGPRVL 186
MVD1 COG3407
Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]; Mevalonate ...
 9-334 2.61e-87

Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]; Mevalonate pyrophosphate decarboxylase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


Pssm-ID: 442633  Cd Length: 322  Bit Score: 267.44  E-value: 2.61e-87
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939   9 TVSAPVNIAVIKYWGKRDVALNLPTNSSISVTLsqDDLRTVTTASCSEKFENDTLWLNGNAEEIfankrlrvcvEELRKA 88
Cdd:COG3407   7 TARAHSNIALIKYWGKRDEELNLPANPSLSLTL--DAFYTTTTVEFDKDLAEDEFILNGEPQKG----------KFLPKI 74

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939  89 R--LDL-EEENDdldkiGALKLHVVSENNFPTAAGLASSAAGYAAFCEAIARLYDLPWTPTQLSRIARQGSGSACRSLFG 165
Cdd:COG3407  75 SkfLDRvRALAG-----KSYHARIESENNFPTAAGLASSASGFAALALAANSAEGLDLDDRKLSRLARLGSGSACRSIFG 149

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939 166 GYVAWEMGELHsgADSVAVQVEPvENWPeIRVAVLVASAAKKGVSSTAGMQaTVASSTLFQHRIQNiVPQRIQEMKTAIR 245
Cdd:COG3407 150 GFVEWGKGEDD--EDSYAVPIPA-EDWD-LADIILVVDKGEKKVSSREGMK-TAETSPFYPAWVEQ-AEEDLEKLKEAIK 223

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114939 246 ERDFETFAKLTMTDSNQFHACCLDTFPPIFYLNDTSRAVIRVVENINatAGKTIAAYTFDAGPNAVIYFLEENSEIVLNT 325
Cdd:COG3407 224 AGDFEALGEIAESNALRMHATMMTSNPPFIYWKPNTLEVINAVRELR--EEGLPVYFTLDAGPNVKVLCPEEDAEKVAAF 301


                ....*....
gi 19114939 326 LYAVTKNAE 334
Cdd:COG3407 302 LAAELVNGQ 310
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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