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Conserved domains on  [gi|429243217|ref|NP_594447|]
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mitochondrial 37S ribosomal protein bS1m [Schizosaccharomyces pombe]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Mit_ribos_Mrp51 super family cl13204
Mitochondrial ribosomal protein subunit; This family is the mitochondrial ribosomal ...
 1-81 4.74e-20

Mitochondrial ribosomal protein subunit; This family is the mitochondrial ribosomal small-subunit protein Mrp51. Its function is not entirely clear, but deletion of the MRP51 gene completely blocked mitochondrial gene expression.


The actual alignment was detected with superfamily member pfam11709:

Pssm-ID: 463327  Cd Length: 358  Bit Score: 88.93  E-value: 4.74e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429243217    1 MSFAQILRGSRAMASPKCLPESNYS--TSHLRFPRLQSITSKKNSRARGDWGLKRTLP-KIKTRYICVRQQDSLYKQADF 77
Cdd:pfam11709   2 SPGANLLRNSRLFQVPKPLPPPLRRsdTATLPYPTHQIITTPPSSLARGDWGLKRPLPsKISTPYIRVNDLDTLERITDF 81


                  ....
gi 429243217   78 QSSA 81
Cdd:pfam11709  82 ESAA 85
 
Name Accession Description Interval E-value
Mit_ribos_Mrp51 pfam11709
Mitochondrial ribosomal protein subunit; This family is the mitochondrial ribosomal ...
 1-81 4.74e-20

Mitochondrial ribosomal protein subunit; This family is the mitochondrial ribosomal small-subunit protein Mrp51. Its function is not entirely clear, but deletion of the MRP51 gene completely blocked mitochondrial gene expression.


Pssm-ID: 463327  Cd Length: 358  Bit Score: 88.93  E-value: 4.74e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429243217    1 MSFAQILRGSRAMASPKCLPESNYS--TSHLRFPRLQSITSKKNSRARGDWGLKRTLP-KIKTRYICVRQQDSLYKQADF 77
Cdd:pfam11709   2 SPGANLLRNSRLFQVPKPLPPPLRRsdTATLPYPTHQIITTPPSSLARGDWGLKRPLPsKISTPYIRVNDLDTLERITDF 81


                  ....
gi 429243217   78 QSSA 81
Cdd:pfam11709  82 ESAA 85
 
Name Accession Description Interval E-value
Mit_ribos_Mrp51 pfam11709
Mitochondrial ribosomal protein subunit; This family is the mitochondrial ribosomal ...
 1-81 4.74e-20

Mitochondrial ribosomal protein subunit; This family is the mitochondrial ribosomal small-subunit protein Mrp51. Its function is not entirely clear, but deletion of the MRP51 gene completely blocked mitochondrial gene expression.


Pssm-ID: 463327  Cd Length: 358  Bit Score: 88.93  E-value: 4.74e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429243217    1 MSFAQILRGSRAMASPKCLPESNYS--TSHLRFPRLQSITSKKNSRARGDWGLKRTLP-KIKTRYICVRQQDSLYKQADF 77
Cdd:pfam11709   2 SPGANLLRNSRLFQVPKPLPPPLRRsdTATLPYPTHQIITTPPSSLARGDWGLKRPLPsKISTPYIRVNDLDTLERITDF 81


                  ....
gi 429243217   78 QSSA 81
Cdd:pfam11709  82 ESAA 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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