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Conserved domains on  [gi|19113224|ref|NP_596432|]
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putative translocon beta subunit Sbh1 [Schizosaccharomyces pombe]

Protein Classification

SEC61-beta family protein( domain architecture ID 10511259)

SEC61-beta family protein similar to Homo sapiens protein transport protein Sec61 subunit beta, which is a component of SEC61 channel-forming translocon complex that mediates transport of signal peptide-containing precursor polypeptides across endoplasmic reticulum (ER)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Sec61_beta pfam03911
Sec61beta family; This family consists of homologs of Sec61beta - a component of the Sec61 ...
 56-93 1.55e-14

Sec61beta family; This family consists of homologs of Sec61beta - a component of the Sec61/SecYEG protein secretory system. The domain is found in eukaryotes and archaea and is possibly homologous to the bacterial SecG. It consists of a single putative transmembrane helix, preceded by a short stretch containing various charged residues; this arrangement may help determine orientation in the cell membrane.


:

Pssm-ID: 427582  Cd Length: 38  Bit Score: 61.62  E-value: 1.55e-14
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 19113224    56 TLLKLYTDEASGFKVDPVVVMVLSVGFIASVFLLHIVA 93
Cdd:pfam03911   1 GLLRYYEEDAPGIKIDPKVVLVLSLAFIASVILLHILA 38
 
Name Accession Description Interval E-value
Sec61_beta pfam03911
Sec61beta family; This family consists of homologs of Sec61beta - a component of the Sec61 ...
 56-93 1.55e-14

Sec61beta family; This family consists of homologs of Sec61beta - a component of the Sec61/SecYEG protein secretory system. The domain is found in eukaryotes and archaea and is possibly homologous to the bacterial SecG. It consists of a single putative transmembrane helix, preceded by a short stretch containing various charged residues; this arrangement may help determine orientation in the cell membrane.


Pssm-ID: 427582  Cd Length: 38  Bit Score: 61.62  E-value: 1.55e-14
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 19113224    56 TLLKLYTDEASGFKVDPVVVMVLSVGFIASVFLLHIVA 93
Cdd:pfam03911   1 GLLRYYEEDAPGIKIDPKVVLVLSLAFIASVILLHILA 38
 
Name Accession Description Interval E-value
Sec61_beta pfam03911
Sec61beta family; This family consists of homologs of Sec61beta - a component of the Sec61 ...
 56-93 1.55e-14

Sec61beta family; This family consists of homologs of Sec61beta - a component of the Sec61/SecYEG protein secretory system. The domain is found in eukaryotes and archaea and is possibly homologous to the bacterial SecG. It consists of a single putative transmembrane helix, preceded by a short stretch containing various charged residues; this arrangement may help determine orientation in the cell membrane.


Pssm-ID: 427582  Cd Length: 38  Bit Score: 61.62  E-value: 1.55e-14
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 19113224    56 TLLKLYTDEASGFKVDPVVVMVLSVGFIASVFLLHIVA 93
Cdd:pfam03911   1 GLLRYYEEDAPGIKIDPKVVLVLSLAFIASVILLHILA 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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