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Conserved domains on  [gi|20806169|ref|NP_620814|]
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large ribosomal subunit protein eL15 [Rattus norvegicus]

Protein Classification

ribosomal protein L15e( domain architecture ID 10467145)

ribosomal protein L15e (RPL15) is required both for 60S subunit formation and for efficient cleavage of the internal transcribed spacer 1

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Ribosomal_L15e pfam00827
Ribosomal L15;
2-191 4.97e-123

Ribosomal L15;


:

Pssm-ID: 459950  Cd Length: 191  Bit Score: 345.66  E-value: 4.97e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20806169     2 GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATY 81
Cdd:pfam00827   1 GAYKYIREAWKKKQSDVVRFLLRVRLWEWRQLPAVHRVERPTRPDRARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGKTG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20806169    82 GKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREM 161
Cdd:pfam00827  81 RKPKRMGVNKLKPAKSLQRIAEERAGRKYPNLRVLNSYWVGEDGTYKYYEVILVDPNHPAIRNDPKINWICNPVHKHREF 160
                         170       180       190
                  ....*....|....*....|....*....|.
gi 20806169   162 RGLTSAGRKSRGL-GKGHKFHHTIGGSRRAA 191
Cdd:pfam00827 161 RGLTSAGKKSRGLrGKGHKGTEKIRPSRRAN 191
 
Name Accession Description Interval E-value
Ribosomal_L15e pfam00827
Ribosomal L15;
2-191 4.97e-123

Ribosomal L15;


Pssm-ID: 459950  Cd Length: 191  Bit Score: 345.66  E-value: 4.97e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20806169     2 GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATY 81
Cdd:pfam00827   1 GAYKYIREAWKKKQSDVVRFLLRVRLWEWRQLPAVHRVERPTRPDRARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGKTG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20806169    82 GKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREM 161
Cdd:pfam00827  81 RKPKRMGVNKLKPAKSLQRIAEERAGRKYPNLRVLNSYWVGEDGTYKYYEVILVDPNHPAIRNDPKINWICNPVHKHREF 160
                         170       180       190
                  ....*....|....*....|....*....|.
gi 20806169   162 RGLTSAGRKSRGL-GKGHKFHHTIGGSRRAA 191
Cdd:pfam00827 161 RGLTSAGKKSRGLrGKGHKGTEKIRPSRRAN 191
PTZ00026 PTZ00026
60S ribosomal protein L15; Provisional
1-204 1.68e-114

60S ribosomal protein L15; Provisional


Pssm-ID: 185402  Cd Length: 204  Bit Score: 324.36  E-value: 1.68e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20806169    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGAT 80
Cdd:PTZ00026   1 MGAYKYLNELWKKKQSDVMRFLLRVRTWEYRQLPVIHRVSRPTRPDKARRLGYKAKQGFVIYRVRVRRGGRKRPVRKGIV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20806169   81 YGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHRE 160
Cdd:PTZ00026  81 YGKPKTQGVNKLKSTRNLRAVAEERVGKRCGNLRVLNSYWVGQDSTYKFYEVILVDPFHNAIRNDPRINWICNPVHKHRE 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 20806169  161 MRGLTSAGRKSRGL-GKGHKfHHTIGGSRRAAWRRRNTLQLHRYR 204
Cdd:PTZ00026 161 LRGLTSAGRKSRGLrVKGHR-ASKLRPSRRANWKRRNRIVLRRYR 204
RPL15A COG1632
Ribosomal protein L15E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
1-195 1.05e-62

Ribosomal protein L15E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L15E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441239  Cd Length: 196  Bit Score: 193.17  E-value: 1.05e-62
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20806169   1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGAT 80
Cdd:COG1632   3 KSMYSYIREAWKRPKEGYVGELQWERLQEWRREPSVVRIERPTRLDRARALGYKAKQGIVVVRVRVRKGGRRKPRPNAGR 82
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20806169  81 ygKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHRE 160
Cdd:COG1632  83 --RPKRMGVNKITPAKSLQRIAEERAARKYPNLEVLNSYWVGEDGKYKWYEVILVDPHHPAIKNDPDLNWICDPSHRGRA 160
                       170       180       190
                ....*....|....*....|....*....|....*
gi 20806169 161 MRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRR 195
Cdd:COG1632 161 FRGLTSAGKKGRGLRNRGKGTEKTRPSIRANERRG 195
 
Name Accession Description Interval E-value
Ribosomal_L15e pfam00827
Ribosomal L15;
2-191 4.97e-123

Ribosomal L15;


Pssm-ID: 459950  Cd Length: 191  Bit Score: 345.66  E-value: 4.97e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20806169     2 GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATY 81
Cdd:pfam00827   1 GAYKYIREAWKKKQSDVVRFLLRVRLWEWRQLPAVHRVERPTRPDRARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGKTG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20806169    82 GKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREM 161
Cdd:pfam00827  81 RKPKRMGVNKLKPAKSLQRIAEERAGRKYPNLRVLNSYWVGEDGTYKYYEVILVDPNHPAIRNDPKINWICNPVHKHREF 160
                         170       180       190
                  ....*....|....*....|....*....|.
gi 20806169   162 RGLTSAGRKSRGL-GKGHKFHHTIGGSRRAA 191
Cdd:pfam00827 161 RGLTSAGKKSRGLrGKGHKGTEKIRPSRRAN 191
PTZ00026 PTZ00026
60S ribosomal protein L15; Provisional
1-204 1.68e-114

60S ribosomal protein L15; Provisional


Pssm-ID: 185402  Cd Length: 204  Bit Score: 324.36  E-value: 1.68e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20806169    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGAT 80
Cdd:PTZ00026   1 MGAYKYLNELWKKKQSDVMRFLLRVRTWEYRQLPVIHRVSRPTRPDKARRLGYKAKQGFVIYRVRVRRGGRKRPVRKGIV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20806169   81 YGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHRE 160
Cdd:PTZ00026  81 YGKPKTQGVNKLKSTRNLRAVAEERVGKRCGNLRVLNSYWVGQDSTYKFYEVILVDPFHNAIRNDPRINWICNPVHKHRE 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 20806169  161 MRGLTSAGRKSRGL-GKGHKfHHTIGGSRRAAWRRRNTLQLHRYR 204
Cdd:PTZ00026 161 LRGLTSAGRKSRGLrVKGHR-ASKLRPSRRANWKRRNRIVLRRYR 204
PRK04243 PRK04243
50S ribosomal protein L15e; Validated
1-195 9.38e-63

50S ribosomal protein L15e; Validated


Pssm-ID: 235263  Cd Length: 196  Bit Score: 193.21  E-value: 9.38e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20806169    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGAT 80
Cdd:PRK04243   3 MSMYSYIREAWKRPKESYVGELMWQRLQEWRREPAVVRIERPTRLDRARALGYKAKQGIVVVRVRVRRGGLRKPRPKGGR 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20806169   81 ygKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHRE 160
Cdd:PRK04243  83 --RPKRMGVNKITPAKSIQRIAEERAARKYPNLEVLNSYWVGEDGKYKWYEVILVDPHHPAIKNDPDLNWICDKSHRGRV 160
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 20806169  161 MRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRR 195
Cdd:PRK04243 161 FRGLTSAGKKGRGLRKKGKGTEKVRPSIRANERRG 195
RPL15A COG1632
Ribosomal protein L15E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
1-195 1.05e-62

Ribosomal protein L15E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L15E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441239  Cd Length: 196  Bit Score: 193.17  E-value: 1.05e-62
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20806169   1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGAT 80
Cdd:COG1632   3 KSMYSYIREAWKRPKEGYVGELQWERLQEWRREPSVVRIERPTRLDRARALGYKAKQGIVVVRVRVRKGGRRKPRPNAGR 82
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20806169  81 ygKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHRE 160
Cdd:COG1632  83 --RPKRMGVNKITPAKSLQRIAEERAARKYPNLEVLNSYWVGEDGKYKWYEVILVDPHHPAIKNDPDLNWICDPSHRGRA 160
                       170       180       190
                ....*....|....*....|....*....|....*
gi 20806169 161 MRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRR 195
Cdd:COG1632 161 FRGLTSAGKKGRGLRNRGKGTEKTRPSIRANERRG 195
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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