|
Name |
Accession |
Description |
Interval |
E-value |
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
14-224 |
9.69e-26 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 110.65 E-value: 9.69e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 14 ESGAEPQEAVLQQLHQLPRGRLDLATQSLTVETCRALGKLLPRETLCTeLVLSDCMLSEEGATLLLRGLCANTVLRFLDL 93
Cdd:COG5238 137 LPRRINLIQVLKDPLGGNAVHLLGLAARLGLLAAISMAKALQNNSVET-VYLGCNQIGDEGIEELAEALTQNTTVTTLWL 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 94 KGNNLRAAGAEALGKLLQQNKSIQSLTLEWNSLGtwDDAFATFCGGLAANGALQRLDLRNNQISHKGAEELALALKGNTT 173
Cdd:COG5238 216 KRNPIGDEGAEILAEALKGNKSLTTLDLSNNQIG--DEGVIALAEALKNNTTVETLYLSGNQIGAEGAIALAKALQGNTT 293
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 21450705 174 LQQLDLRWNNVGLLGGRALMNCLPSNRTLWRLDLAGNNIPGDVLRAVEQAM 224
Cdd:COG5238 294 LTSLDLSVNRIGDEGAIALAEGLQGNKTLHTLNLAYNGIGAQGAIALAKAL 344
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
12-257 |
1.17e-25 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 110.26 E-value: 1.17e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 12 CRESGAEPQEAVLQQLHQLPRGR-LDLATQSLTVETCRALGKLLPRETLCTELVLSDCMLSEEGATLLLRGLCANTVLRF 90
Cdd:COG5238 189 CNQIGDEGIEELAEALTQNTTVTtLWLKRNPIGDEGAEILAEALKGNKSLTTLDLSNNQIGDEGVIALAEALKNNTTVET 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 91 LDLKGNNLRAAGAEALGKLLQQNKSIQSLTLEWNSLGtwDDAFATFCGGLAANGALQRLDLRNNQISHKGAEELALALKG 170
Cdd:COG5238 269 LYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIG--DEGAIALAEGLQGNKTLHTLNLAYNGIGAQGAIALAKALQE 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 171 NTTLQQLDLRWNNVGLLGGRALMNCLPSNRTLWRLDLAGNNIPGDVLRAVEQAMGHSQDRLTTFQENQARTHVLSKEVQH 250
Cdd:COG5238 347 NTTLHSLDLSDNQIGDEGAIALAKYLEGNTTLRELNLGKNNIGKQGAEALIDALQTNRLHTLILDGNLIGAEAQQRLEQL 426
|
....*..
gi 21450705 251 LREEKSK 257
Cdd:COG5238 427 LERIKSV 433
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
34-224 |
5.25e-22 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 97.43 E-value: 5.25e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 34 RLDLATQSLTVETCRALGKLLPRETLcTELVLSDCMLSEEGATLLLRGLCANTV-LRFLDLKGNNLRAAGAEALGKLLQQ 112
Cdd:cd00116 85 ELDLSDNALGPDGCGVLESLLRSSSL-QELKLNNNGLGDRGLRLLAKGLKDLPPaLEKLVLGRNRLEGASCEALAKALRA 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 113 NKSIQSLTLEWNSLGtwDDAFATFCGGLAANGALQRLDLRNNQISHKGAEELALALKGNTTLQQLDLRWNNVGLLGGRAL 192
Cdd:cd00116 164 NRDLKELNLANNGIG--DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241
|
170 180 190
....*....|....*....|....*....|...
gi 21450705 193 MNCLPS-NRTLWRLDLAGNNIPGDVLRAVEQAM 224
Cdd:cd00116 242 ASALLSpNISLLTLSLSCNDITDDGAKDLAEVL 274
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
47-210 |
1.07e-16 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 81.63 E-value: 1.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 47 CRALGKLLPRetlCTELVLSDCMLSEEGATLLLRGLCANTVLRFLDLKGNNLRAAGAEALGKLLQQNKSIQSLTLEWNSL 126
Cdd:cd00116 129 AKGLKDLPPA---LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 127 GtwDDAFATFCGGLAANGALQRLDLRNNQISHKGAEELALALK-GNTTLQQLDLRWNNVGLLGGRALMNCLPSNRTLWRL 205
Cdd:cd00116 206 T--DEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLsPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLEL 283
|
....*
gi 21450705 206 DLAGN 210
Cdd:cd00116 284 DLRGN 288
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
28-185 |
2.19e-16 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 80.48 E-value: 2.19e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 28 HQLPRGRLDLATQSLTVETCRALGKLLPRETLCTELVLSDCMLSEEGATLLLRGLCANTVLRFLDLKGNNLRAAGAEALG 107
Cdd:cd00116 135 LPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA 214
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 21450705 108 KLLQQNKSIQSLTLEWNSLGTWDdaFATFCGGL-AANGALQRLDLRNNQISHKGAEELALALKGNTTLQQLDLRWNNVG 185
Cdd:cd00116 215 ETLASLKSLEVLNLGDNNLTDAG--AAALASALlSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
246-656 |
2.56e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.98 E-value: 2.56e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 246 KEVQHLREEKSKQFLDLMETIDKQREEMAKSSRASAARVGQLQEALNERHSIINALKAKLQMTEAALALSEQKAQDLGEL 325
Cdd:COG1196 245 EAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 326 LATAEQEQLSLSQRQAKELKLEQQEAAERESKLLRDLSAANEKNLLLQNQVDELERKFRCQQEQLFQTRQEMTSMSAELK 405
Cdd:COG1196 325 LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 406 MRAIQAEERLDMEKRRCRQSLEDSESLRIKEVEHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKAAALSERGQAEE 485
Cdd:COG1196 405 LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLE 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 486 ELIKAKSQARLEEQQRLAHLED------KLRLLAQARDEAQGACLQQKQVVAEAQTRVSQLGLQVEGLRRRLEELQQELS 559
Cdd:COG1196 485 ELAEAAARLLLLLEAEADYEGFlegvkaALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIE 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 560 LKDQERVAEVSRVRVELQEQNGRLQA--ELAAQEALREKAAALERQLKVMASDHREALLDRESENASLREKLRLREAEIA 637
Cdd:COG1196 565 YLKAAKAGRATFLPLDKIRARAALAAalARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAG 644
|
410
....*....|....*....
gi 21450705 638 RIRDEEAQRASFLQNAVLA 656
Cdd:COG1196 645 RLREVTLEGEGGSAGGSLT 663
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
35-233 |
1.04e-14 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 75.47 E-value: 1.04e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 35 LDLATQSLTVETCRALGKLLPRETLCTELVLSDCML--SEEGATLLLRGLCANTVLRFLDLKGNNLRAAGAEALgKLLQQ 112
Cdd:cd00116 28 LRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETgrIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL-ESLLR 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 113 NKSIQSLTLEWNSLGtwDDAFATFCGGL-----------------------------AANGALQRLDLRNNQISHKGAEE 163
Cdd:cd00116 107 SSSLQELKLNNNGLG--DRGLRLLAKGLkdlppaleklvlgrnrlegascealakalRANRDLKELNLANNGIGDAGIRA 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 164 LALALKGNTTLQQLDLRWNNVGLLGGRALMNCLPSNRTLWRLDLAGNNIPGDVLRAVEQAMGHSQDRLTT 233
Cdd:cd00116 185 LAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT 254
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
336-667 |
6.82e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.36 E-value: 6.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 336 LSQRQAKELKLEQQEAAERESKLLRDLSAANEKNLLLQNQVDELERKFRCQQEQLFQTRQEMTSMSAELkMRAIQAEERL 415
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE-YELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 416 DMEKRRCRQSLEDSESlRIKEVEHMTRHLEESEKAMQERVQRLEAARLSLEEEL--SRVKAAALSERGQAEEELIKAKSQ 493
Cdd:COG1196 301 EQDIARLEERRRELEE-RLEELEEELAELEEELEELEEELEELEEELEEAEEELeeAEAELAEAEEALLEAEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 494 ARLEEQQRLAHLEDKLRLLAQARDEAQGACLQQKQVVAEAQTRVSQLGLQVEGLRRRLEELQQELS------LKDQERVA 567
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEeaaeeeAELEEEEE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 568 EVSRVRVELQEQNGRLQAELAAQEALREKAAALERQLKVMASDHreALLDRESENASLREKLRLREAEIARIRDEEAQRA 647
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY--EGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYE 537
|
330 340
....*....|....*....|
gi 21450705 648 SFLQNAVLAYVQASPVRTLS 667
Cdd:COG1196 538 AALEAALAAALQNIVVEDDE 557
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
244-656 |
6.94e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.36 E-value: 6.94e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 244 LSKEVQHLRE--EKSKQFLDLMETID-KQREEMAKSSRASAARVGQLQEALNERHSIINALKAKLQMTEAALALSEQKAQ 320
Cdd:COG1196 198 LERQLEPLERqaEKAERYRELKEELKeLEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 321 DLgELLATAEQEQLSLSQRQAKELKLEQQEAAERESKLLRDLSAANEKNLLLQNQVDELERkfrcQQEQLFQTRQEMTSM 400
Cdd:COG1196 278 EL-ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE----ELEELEEELEEAEEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 401 SAELKMRAIQAEERLDMEKRRCRQSLEDSESLRIKEVEHMTRHLEEsekamQERVQRLEAARLSLEEELSRVKAAALSER 480
Cdd:COG1196 353 LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL-----AAQLEELEEAEEALLERLERLEEELEELE 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 481 GQAEEELikaksQARLEEQQRLAHLEDKLRLLAQARDEAQGACLQQKQVVAEAQTRVSQLGLQVEGLRRRlEELQQELSL 560
Cdd:COG1196 428 EALAELE-----EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR-LLLLLEAEA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 561 KDQERVAEVSRVRVELQEQNGRLQAELAAQEALREKAAALERQLKVMASDHREALLDRESENASLREKL--RLREAEIAR 638
Cdd:COG1196 502 DYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKagRATFLPLDK 581
|
410
....*....|....*...
gi 21450705 639 IRDEEAQRASFLQNAVLA 656
Cdd:COG1196 582 IRARAALAAALARGAIGA 599
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
244-556 |
7.65e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 7.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 244 LSKEVQHLRE--EKSKQFLDLMETI-DKQREEMAKSSRASAARVGQLQEALNERHSIINALKAKLQMTEAALALSEQKAQ 320
Cdd:TIGR02168 198 LERQLKSLERqaEKAERYKELKAELrELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVS 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 321 DLGELLATAEQEQLSLSQRQAkELKLEQQEAAERESKLLRDLSAANEKNLLLQNQVDELERKFRCQQEQLFQTRQEMTSM 400
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEIS-RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 401 SAELKMRAIQAEERldmeKRRCRQSLEDSESLRIKEVEhmtrhLEESEKAMQERVQRLEAarlsleeELSRVKAAALSER 480
Cdd:TIGR02168 357 EAELEELEAELEEL----ESRLEELEEQLETLRSKVAQ-----LELQIASLNNEIERLEA-------RLERLEDRRERLQ 420
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 21450705 481 GQAEEELIKAKSQARLEEQQRLAHLEDKLRLLAQARDEAQGACLQQKQVVAEAQTRVSQLGLQVEGLRRRLEELQQ 556
Cdd:TIGR02168 421 QEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
217-642 |
2.30e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.27 E-value: 2.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 217 LRAVEQAMGHSQDRLTTFQENQARTHVLSKEVQHLREEKSKQFLDLMETIDKQREEMAKSSRASAARVGQLQEALNERHS 296
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 297 IINALKAKLQMTEAALALSEQKAQDLGELLATAEQEQLSLSQRQAKELKLEQQEAAERESKLLRDLSAANEKNLLLQNQV 376
Cdd:COG1196 426 LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG 505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 377 DELERKFRCQQEQLFQTRQEMTSMSAELKMRAIQAEERLDmekRRCRQSLEDSESLRIKEVEHMTRHLEESEKAMQERVQ 456
Cdd:COG1196 506 FLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALA---AALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKI 582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 457 RLEAARLSLEEELSRVKAAALSERGQAEEELIKAKSQARLEEQQRLAHLEDKLRLLAQARDEAQGACLQQKQVVAEAQTR 536
Cdd:COG1196 583 RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSL 662
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 537 VSQLGLQVEGLRRRLEELQQELSLKDQERVAEVSRVRVELQEQNGRLQAELAAQEALREKAAALERQLKVMASDHREALL 616
Cdd:COG1196 663 TGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL 742
|
410 420 430
....*....|....*....|....*....|...
gi 21450705 617 DRESENASLREKLRLR-------EAEIARIRDE 642
Cdd:COG1196 743 EEEELLEEEALEELPEppdleelERELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
229-548 |
7.64e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 7.64e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 229 DRLTTFQENQARTHVLSKEVQHLREEKSKQfldlMETIDKQREEMAKSSRASAARVGQLQEALNERHSIINALKAKLQMT 308
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAE----LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQIL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 309 EAALALSEQKAQDLGELLATAEQeQLSLSQRQAKELKLEQQEAAERESKLLRDLSAANEKNLLLQNQVDELERKFRCQQE 388
Cdd:TIGR02168 308 RERLANLERQLEELEAQLEELES-KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 389 QLFQTRQEMTSMSAELkmraIQAEERLDMEKRRCRQSLEDSESLRIKEVEHmtrhleeSEKAMQERVQRLEAARLSLEEE 468
Cdd:TIGR02168 387 KVAQLELQIASLNNEI----ERLEARLERLEDRRERLQQEIEELLKKLEEA-------ELKELQAELEELEEELEELQEE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 469 LSRVKAAALSERGQAEEelikaKSQARLEEQQRLAHLEDKLRLLAQARDEAQGACLQQKQVVAEAQTRVSQLGLQVEGLR 548
Cdd:TIGR02168 456 LERLEEALEELREELEE-----AEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELIS 530
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
301-607 |
3.37e-10 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 63.22 E-value: 3.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 301 LKAKLQMTEAALALSEQKAQDLGELLATAE--QEQLSLSQRQAKELKLEQQEAAeRESKLLRDLSAANEKNLLLQNQVDE 378
Cdd:pfam17380 271 LNQLLHIVQHQKAVSERQQQEKFEKMEQERlrQEKEEKAREVERRRKLEEAEKA-RQAEMDRQAAIYAEQERMAMERERE 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 379 LER-KFRCQQEQLFQTRQEMTSMSAElKMRAIqaeERLDMEKR----RCRQSLEDSESLRIKEVE----------HMTRH 443
Cdd:pfam17380 350 LERiRQEERKRELERIRQEEIAMEIS-RMREL---ERLQMERQqkneRVRQELEAARKVKILEEErqrkiqqqkvEMEQI 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 444 LEESEKAMQERVQRLEAARlslEEELSRVKAAALSERGQAE------EELIKAKSQARLEEQQRLAHLEDKLRLLAQARD 517
Cdd:pfam17380 426 RAEQEEARQREVRRLEEER---AREMERVRLEEQERQQQVErlrqqeEERKRKKLELEKEKRDRKRAEEQRRKILEKELE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 518 EAQGACLQQKQvvaeaqtrvsqlglQVEGLRRRLEELQQELSLKDQERVAEVSRVRVELQEQNGRLQAELAAQEALREKA 597
Cdd:pfam17380 503 ERKQAMIEEER--------------KRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRL 568
|
330
....*....|
gi 21450705 598 AALERQLKVM 607
Cdd:pfam17380 569 EAMEREREMM 578
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
221-646 |
3.56e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.62 E-value: 3.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 221 EQAMGHSQDRLTTFQENQARThvlSKEVQHLREEKSKQflDLMETIDKQREEMAKSSRASAARVGQLQEALNERHSIINA 300
Cdd:PTZ00121 1259 EARMAHFARRQAAIKAEEARK---ADELKKAEEKKKAD--EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADA 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 301 LKAKLQ----MTEAALALSEQKAQDL--GELLATAEQEQLSLSQRQAKELKL---EQQEAAERESKLLRDLSAANE--KN 369
Cdd:PTZ00121 1334 AKKKAEeakkAAEAAKAEAEAAADEAeaAEEKAEAAEKKKEEAKKKADAAKKkaeEKKKADEAKKKAEEDKKKADElkKA 1413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 370 LLLQNQVDELERKFR-CQQEQLFQTRQEMTSMSAELKMRAIQAEERLDM-----EKRRCRQSLEDSESLRI-----KEVE 438
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEeKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAkkkaeEAKKADEAKKKAEEAKKadeakKKAE 1493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 439 HMTRHLEESEKAMQER-----VQRLEAARLSLE----EELSRVKAAALSERGQAEEELIKAKS-----------QARLEE 498
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKkkadeAKKAEEAKKADEakkaEEAKKADEAKKAEEKKKADELKKAEElkkaeekkkaeEAKKAE 1573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 499 QQRLAHLE--DKLRLLAQAR-DEAQGACLQQKQVVAEAQTRVSQLGLQVEGLRRRLEELQ--QELSLKDQERVAEVSRVR 573
Cdd:PTZ00121 1574 EDKNMALRkaEEAKKAEEARiEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKkvEQLKKKEAEEKKKAEELK 1653
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 21450705 574 VElqEQNGRLQAELAAQEALREKAAALERQLKVMASDHREALLDRESENASLREKLRLREAEIAR----IRDEEAQR 646
Cdd:PTZ00121 1654 KA--EEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKkaeeLKKAEEEN 1728
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
372-643 |
3.58e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 3.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 372 LQNQVDELERKFRCQQEQLFQTRQEMTSmsAELKMRAIQAE-ERLDMEKRRCRQSLEDSESlRIKEVEHMTRHLEESEKA 450
Cdd:TIGR02169 686 LKRELSSLQSELRRIENRLDELSQELSD--ASRKIGEIEKEiEQLEQEEEKLKERLEELEE-DLSSLEQEIENVKSELKE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 451 MQERVQRLEAARLSLEEELSRVKAAALSERGQAEEELIKAKSQARLEEQQRLAHLEDKLRLLAQARDEAQGACLQQKQVV 530
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 531 AEAQTRVSQLGLQVEGLRRRLEELQQELSlKDQERVAEVSRVRVELQEQNGRLQAELAAQEALREKAAALERQLKVMASD 610
Cdd:TIGR02169 843 IDLKEQIKSIEKEIENLNGKKEELEEELE-ELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE 921
|
250 260 270
....*....|....*....|....*....|...
gi 21450705 611 HREALLDRESENASLREKLRLREAEIARIRDEE 643
Cdd:TIGR02169 922 LKAKLEALEEELSEIEDPKGEDEEIPEEELSLE 954
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
314-638 |
7.72e-10 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 62.28 E-value: 7.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 314 LSEQKAQDLGELLATaeQEQLSLSQRQAKELKLEQQEAAERESKLLRDLSAANEKNLLLQNQVDELERKFRCQQ------ 387
Cdd:COG3096 283 LSERALELRRELFGA--RRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQTALRQQEKIERYQEdleelt 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 388 ---EQLFQTRQEMTSMSAELKMRAIQAEER--------------LDMEKRR------CRQSLEDSEslRIKEVEHMTRH- 443
Cdd:COG3096 361 erlEEQEEVVEEAAEQLAEAEARLEAAEEEvdslksqladyqqaLDVQQTRaiqyqqAVQALEKAR--ALCGLPDLTPEn 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 444 LEESEKAMQERVQRLEAARLSLEEELSRVKAAALS---------------ERGQA----EEELIKAKSQARLEEQ----- 499
Cdd:COG3096 439 AEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQfekayelvckiagevERSQAwqtaRELLRRYRSQQALAQRlqqlr 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 500 QRLAHLEDKLRLLAQARDEAQGACLQQKQVVAEAQtrvsQLGLQVEGLRRRLEELQQELSlKDQERVAEVSRVRVELQEQ 579
Cdd:COG3096 519 AQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAE----ELEELLAELEAQLEELEEQAA-EAVEQRSELRQQLEQLRAR 593
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 21450705 580 NGRLQAE----LAAQEAL----REKAAALERQLKVMAsdHREALLDRESENASLREKLRLREAEIAR 638
Cdd:COG3096 594 IKELAARapawLAAQDALerlrEQSGEALADSQEVTA--AMQQLLEREREATVERDELAARKQALES 658
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
476-646 |
5.90e-09 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 59.37 E-value: 5.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 476 ALSERGQAEEELIKAKSQARLEEQQRLAHLEDKlRLLAQARDEAQGACLQQKQVVAE----AQTRVSQLG-LQVEGLRRR 550
Cdd:pfam17380 283 AVSERQQQEKFEKMEQERLRQEKEEKAREVERR-RKLEEAEKARQAEMDRQAAIYAEqermAMERERELErIRQEERKRE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 551 LEELQQELSLKDQERVAEVSRVRVELQEQNGRLQAELAAqeALREKAAALERQLKVMASDHREALLDRESENASLREKLR 630
Cdd:pfam17380 362 LERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEA--ARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRR 439
|
170
....*....|....*....
gi 21450705 631 L---REAEIARIRDEEAQR 646
Cdd:pfam17380 440 LeeeRAREMERVRLEEQER 458
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
268-571 |
7.13e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.38 E-value: 7.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 268 KQREEMAKSSRASAARVGQLQEALNERHSIINALKA--KLQMTEAALALSEQKAQDL--GELLATAEQEQLSLSQRQAKE 343
Cdd:PTZ00121 1483 KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAeeAKKADEAKKAEEAKKADEAkkAEEKKKADELKKAEELKKAEE 1562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 344 LKL--EQQEAAERESKLLR---DLSAANEKNLLLQNQVDELERKFRCQQ---EQLFQTRQEMTSMSAELKMRAIQAEERL 415
Cdd:PTZ00121 1563 KKKaeEAKKAEEDKNMALRkaeEAKKAEEARIEEVMKLYEEEKKMKAEEakkAEEAKIKAEELKKAEEEKKKVEQLKKKE 1642
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 416 DMEKRRCRQSLEDSESLRIKEVEHMTRHLEESEKAmqERVQRLEAARLSLEEELSRV--KAAALSERGQAEEELIKAKSQ 493
Cdd:PTZ00121 1643 AEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA--EEAKKAEEDEKKAAEALKKEaeEAKKAEELKKKEAEEKKKAEE 1720
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 21450705 494 ARLEEQQRLAHLEDKLRLLAQARDEAQGACLQQKQVVAEAQTRVSQLGLQVEGLRRRLEELQQELSLKDQERVAEVSR 571
Cdd:PTZ00121 1721 LKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
268-604 |
7.21e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 7.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 268 KQREEMAKSSRASAARVGQLQEALNERHSIINALKAKLQMTEAALALSEQKAQDLGELLATAEQEQlslsQRQAKELKLE 347
Cdd:TIGR02168 172 ERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEEL----REELEELQEE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 348 QQEAAERESKLLRDLSAANEKNLLLQNQVDELERKFRCQQEQLFQTRQEMtsmsaelkmraiqaeERLDMEKRRCRQSLE 427
Cdd:TIGR02168 248 LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI---------------SRLEQQKQILRERLA 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 428 DSE------SLRIKEVEHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKA--AALSERGQAEEELIKAKSQARLEEQ 499
Cdd:TIGR02168 313 NLErqleelEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAelEELESRLEELEEQLETLRSKVAQLE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 500 QRLAHLEDKLRLLAQARDEAQGACLQQKQVVAEAQTRVSQLglQVEGLRRRLEELQQELSLKDQER---VAEVSRVRVEL 576
Cdd:TIGR02168 393 LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEELEELQEELerlEEALEELREEL 470
|
330 340
....*....|....*....|....*...
gi 21450705 577 QEQNGRLQAELAAQEALREKAAALERQL 604
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARLDSLERLQ 498
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
450-640 |
2.47e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.62 E-value: 2.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 450 AMQERVQRLEAARLSLEEELSRVKAaaLSERGQAEEELIKAKSQARL-----------EEQQRLAHLEDKLRLLAQARDE 518
Cdd:COG4913 229 ALVEHFDDLERAHEALEDAREQIEL--LEPIRELAERYAAARERLAEleylraalrlwFAQRRLELLEAELEELRAELAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 519 AQGACLQQKQVVAEAQTRVSQLGLQVEGL-RRRLEELQQELSLKDQERvAEVSRVRVELQEQNGRLQAELAAQE----AL 593
Cdd:COG4913 307 LEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLEREL-EERERRRARLEALLAALGLPLPASAeefaAL 385
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 21450705 594 REKAAALERQLKVMASDHREALLDRESENASLREKLRLREAEIARIR 640
Cdd:COG4913 386 RAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
342-646 |
2.68e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 2.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 342 KELKLEQQEAAEREskLLRDLSAANEKNLLLQNQVDELERKFRCQQEQLFQTRQEMTSMSAELKMRAIQAEERLDMEKRR 421
Cdd:TIGR02169 214 QALLKEKREYEGYE--LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLR 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 422 CRQsledseslRIKEVEHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKA-AALSERGQAEEELIKAKSQARLEEqq 500
Cdd:TIGR02169 292 VKE--------KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAeIEELEREIEEERKRRDKLTEEYAE-- 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 501 rlahLEDKLRLLAQARDEAQGACLQQKQVVAEAQTRVSQLGLQVEGLRRRLEELQQELSLKDQERV---AEVSRVR---V 574
Cdd:TIGR02169 362 ----LKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELAdlnAAIAGIEakiN 437
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 21450705 575 ELQEQNGRLQAELAAQEALREkaaalerQLKVMASDHREALLDRESENASLREKLRLREAEIARIrdeEAQR 646
Cdd:TIGR02169 438 ELEEEKEDKALEIKKQEWKLE-------QLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEA---EAQA 499
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
452-636 |
7.83e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.69 E-value: 7.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 452 QERVQRLEAARLSLEEELSRVKAA---ALSERGQAEEELIKAKSQARLEEQQRLAHLEDKLRLLAQARDEAQgaclqqkQ 528
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAElerLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERE-------R 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 529 VVAEAQTRVSQLGLQVEGLRRRLEELQQELslkdQERVAEVSRVRVELQEQNGRLQAELaaqEALREKAAALERQLKVMA 608
Cdd:COG4913 360 RRARLEALLAALGLPLPASAEEFAALRAEA----AALLEALEEELEALEEALAEAEAAL---RDLRRELRELEAEIASLE 432
|
170 180 190
....*....|....*....|....*....|
gi 21450705 609 sdHREALLDRESENA--SLREKLRLREAEI 636
Cdd:COG4913 433 --RRKSNIPARLLALrdALAEALGLDEAEL 460
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
40-212 |
1.58e-07 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 54.17 E-value: 1.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 40 QSLTVETCRALGKLlpreTLCTELVLSDCMLSEegatlLLRGLCANTVLRFLDLKGNNLraagaEALGKLLQQNKSIQSL 119
Cdd:COG4886 99 TELDLSGNEELSNL----TNLESLDLSGNQLTD-----LPEELANLTNLKELDLSNNQL-----TDLPEPLGNLTNLKSL 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 120 TLEWNSLGTWDDAFatfcGGLAAngaLQRLDLRNNQIShkgaeELALALKGNTTLQQLDLRWNNVgllggRALMNCLPSN 199
Cdd:COG4886 165 DLSNNQLTDLPEEL----GNLTN---LKELDLSNNQIT-----DLPEPLGNLTNLEELDLSGNQL-----TDLPEPLANL 227
|
170
....*....|...
gi 21450705 200 RTLWRLDLAGNNI 212
Cdd:COG4886 228 TNLETLDLSNNQL 240
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
268-635 |
2.20e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 2.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 268 KQREEMAKSSRASAARVG----QLQEALNERHSIINALKAKLQMTEAALALSEQKAQDLGELLATAEQEQLSLSQRQAkE 343
Cdd:PRK02224 352 DDLEERAEELREEAAELEseleEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREA-E 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 344 LKLEQQEAAERESKLLRDLSAAN----EKNLLLQNQVDELERKfRCQQEQLFQTRQEMTSMSAELKMRAIQAEERLDMEK 419
Cdd:PRK02224 431 LEATLRTARERVEEAEALLEAGKcpecGQPVEGSPHVETIEED-RERVEELEAELEDLEEEVEEVEERLERAEDLVEAED 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 420 R--RCRQSLEDSESLRikeVEHMTRHLEESEKAMQERVqrlEAARLSLEEELSRVKAAALSERGQAEEELIKAKSQARLE 497
Cdd:PRK02224 510 RieRLEERREDLEELI---AERRETIEEKRERAEELRE---RAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAE 583
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 498 ---EQQRLAHLEDKLRLLAQARDE--------AQGACL--QQKQVVAEAQTRVSQLGLQVEGlrRRLEELQQELSLKDQ- 563
Cdd:PRK02224 584 lkeRIESLERIRTLLAAIADAEDEierlrekrEALAELndERRERLAEKRERKRELEAEFDE--ARIEEAREDKERAEEy 661
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 21450705 564 -----ERVAEVSRVRVELQEQNGRLQAELAAQEALREKAAALERQLKVMASDHREAlLDRESENASLREKLRLREAE 635
Cdd:PRK02224 662 leqveEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALEALYDEA-EELESMYGDLRAELRQRNVE 737
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
246-653 |
2.61e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.38 E-value: 2.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 246 KEVQHLREEKSKQFLDLMETIDKQREEmakSSRASAARVGQLQEALNE-RHSIINALKAKLQMTEAALALSEQKAQDLGE 324
Cdd:PTZ00121 1215 EEARKAEDAKKAEAVKKAEEAKKDAEE---AKKAEEERNNEEIRKFEEaRMAHFARRQAAIKAEEARKADELKKAEEKKK 1291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 325 llatAEQEQLSLSQRQAKELKLEQQEAAEREsKLLRDLSAANEKNLLLQNQVDELERKFRCQQEQLFQTRQEMTSmsAEL 404
Cdd:PTZ00121 1292 ----ADEAKKAEEKKKADEAKKKAEEAKKAD-EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA--AEE 1364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 405 KMRAiqAEERLDMEKRRCRQSLEDSEslRIKEVEHMTRHLEESEKAMQErVQRLEAARLSLEEelSRVKAaalSERGQAE 484
Cdd:PTZ00121 1365 KAEA--AEKKKEEAKKKADAAKKKAE--EKKKADEAKKKAEEDKKKADE-LKKAAAAKKKADE--AKKKA---EEKKKAD 1434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 485 EELIKAKSQARLEEQQRLAHLEDKLRLLAQARDEAQGACLQQKQvvAEAQTRVSQLGLQVEGLRRRLEELQQELSLK--- 561
Cdd:PTZ00121 1435 EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK--AEEAKKADEAKKKAEEAKKKADEAKKAAEAKkka 1512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 562 DQERVAEVSRVRVELQEQNGRLQAELAAQEALREKAAALERQLKVMASDH------------------REALLDRESENA 623
Cdd:PTZ00121 1513 DEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEkkkaeeakkaeedknmalRKAEEAKKAEEA 1592
|
410 420 430
....*....|....*....|....*....|....*.
gi 21450705 624 SLREKLRLRE------AEIARIRDEEAQRASFLQNA 653
Cdd:PTZ00121 1593 RIEEVMKLYEeekkmkAEEAKKAEEAKIKAEELKKA 1628
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
331-615 |
3.25e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 3.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 331 QEQLSLSQRQAKELKLEQQEAAERESKLLRDLSAANEKNLLLQNQVDELERKFRCQQEQLFQTRQEMTSMSAELKMRAIQ 410
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 411 AEERLDMEKRRCRQSLEDSESL-----RIKEVEHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKAAA--LSERGQA 483
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIeqlkeELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLedLEEQIEE 849
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 484 EEELIKAKSQARLEEQQRLAHLEDKLRLLAQARDEAQGACLQQKQVVAEAQTRVSQLGLQVEGLRRRLEELQQELSlkdq 563
Cdd:TIGR02168 850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLA---- 925
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 21450705 564 ERVAEVSRVRVELQEQNGRL----QAELAAQEALREKAAALERQLKVMASDHREAL 615
Cdd:TIGR02168 926 QLELRLEGLEVRIDNLQERLseeySLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
213-645 |
4.14e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.51 E-value: 4.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 213 PGDVLRAVEQAMGHSQDRLTTFQENQ---ARTHVLSKEVQHLREEKSKQFLDLMETIDKQREEMAKSSR---ASAARVGQ 286
Cdd:PRK02224 204 LHERLNGLESELAELDEEIERYEEQReqaRETRDEADEVLEEHEERREELETLEAEIEDLRETIAETERereELAEEVRD 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 287 LQEALNERHSIINALKAKLQMTEAALALSEQKAQDLGELLATAEQEqlSLSQRQAKELKLEQQEAAERESKLLRDLSA-A 365
Cdd:PRK02224 284 LRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDR--LEECRVAAQAHNEEAESLREDADDLEERAEeL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 366 NEKNLLLQNQVDELERKFRCQQEQLFQTRQEMTSMSAELKMRAIQ---AEERLDMekrrcrqSLEDSESLRIKEVEhMTR 442
Cdd:PRK02224 362 REEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDlgnAEDFLEE-------LREERDELREREAE-LEA 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 443 HLEESEKAMQERVQRLEAARL-----SLEE-------ELSRVKAAAL-SERGQAEEELikAKSQARLEEQQRLAHLEDKL 509
Cdd:PRK02224 434 TLRTARERVEEAEALLEAGKCpecgqPVEGsphvetiEEDRERVEELeAELEDLEEEV--EEVEERLERAEDLVEAEDRI 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 510 RLLAQARDEAQgaclqqkQVVAEAQTRVSQLGLQVEGLRRRLEELQQELSLKD---QERVAEVSRVRVELQEQNGRLQA- 585
Cdd:PRK02224 512 ERLEERREDLE-------ELIAERRETIEEKRERAEELRERAAELEAEAEEKReaaAEAEEEAEEAREEVAELNSKLAEl 584
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 21450705 586 --ELAAQEALREKAAALE--RQLKVMASDHREALLDRESEN----ASLREKLRLREAEIARIRDEEAQ 645
Cdd:PRK02224 585 keRIESLERIRTLLAAIAdaEDEIERLREKREALAELNDERrerlAEKRERKRELEAEFDEARIEEAR 652
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
235-605 |
5.05e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 5.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 235 QENQARTHVLSKEVQHLREEKSKQFLDLMETIDKQREEMAKSSRASAaRVGQLQEALNERHSIINALKAKLQMTEAALAL 314
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK-EIEQLEQEEEKLKERLEELEEDLSSLEQEIEN 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 315 SEQKAQDLGELLataEQEQLSLSQRQAKELKLEQQEAAERESKLLRDLSAANEKNLLLQNQVDELERKFRCQQEQLFQTR 394
Cdd:TIGR02169 756 VKSELKELEARI---EELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 395 QEMtsmsAELKMRAIQAEERLDMEKRrcrqsledseslRIKEVEHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKA 474
Cdd:TIGR02169 833 KEI----QELQEQRIDLKEQIKSIEK------------EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 475 aalsERGQAEEELIKAKSQARLEEqQRLAHLEDKLRLLAQARDEAqGACLQQKQVVAEAQTRVSQLGLQVEGLRRRLEEL 554
Cdd:TIGR02169 897 ----QLRELERKIEELEAQIEKKR-KRLSELKAKLEALEEELSEI-EDPKGEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 21450705 555 qQELSLKDQERVAEVSRVRVELQEQNGRLQAElaaQEALREKAAALERQLK 605
Cdd:TIGR02169 971 -EPVNMLAIQEYEEVLKRLDELKEKRAKLEEE---RKAILERIEEYEKKKR 1017
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
444-642 |
7.88e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 7.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 444 LEESEKAMQERVQRLEAARLSLEEeLSRVKAAALSERGQAEEELIKAKSQARLEEQQrLAHLEDKLRLLAQARDEAQGAC 523
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAA-LKKEEKALLKQLAALERRIAALARRIRALEQE-LAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 524 LQQKQVVAEAQTRVSQLGLQ-----------VEGLRRRLEELQQeLSLKDQERVAEVSRVRVELQEQNGRLQAELAAQEA 592
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQpplalllspedFLDAVRRLQYLKY-LAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 21450705 593 LREKAAALERQLKVMASDHREALLDRESENASLREKLRLREAEIARIRDE 642
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
433-656 |
9.76e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 9.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 433 RIKEVEHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKAAALSERGQ---AEEELIKAKSQARLEEQQR------LA 503
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQisaLRKDLARLEAEVEQLEERIaqlskeLT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 504 HLEDKLRLLAQARDEAQGACLQQKQVVAEAQTRVSQLGLQVEGLRRRLEELQQELslkdqervaevsrvrvelQEQNGRL 583
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL------------------TLLNEEA 819
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 21450705 584 QAELAAQEALREKAAALERQLKVMASDHREALLDRESENASLREKLRLREAEIARIRDEEAQRASFLQNAVLA 656
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALL 892
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
286-648 |
1.74e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.51 E-value: 1.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 286 QLQEALNERHSIINALKAKLQMTEAALALSEQKAQDLGELLATAEQEQLSLSQRQAKELKLEQQEAAERESKLLRDLSAA 365
Cdd:TIGR00618 212 CMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARK 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 366 NEKNLLLQNQVDELERKfrcQQEQLFQTRQEMTSMSAELKMRAIQAEERLDM-EKRRCRQSLEDSESLRIKEVEHMTRHL 444
Cdd:TIGR00618 292 AAPLAAHIKAVTQIEQQ---AQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIeEQRRLLQTLHSQEIHIRDAHEVATSIR 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 445 EESEKAMQERvQRLEAARLSLEEELSRVK-AAALSERGQAEEELIKAKSQARLEEQQRLAHLEdklrllAQARDEAQGAC 523
Cdd:TIGR00618 369 EISCQQHTLT-QHIHTLQQQKTTLTQKLQsLCKELDILQREQATIDTRTSAFRDLQGQLAHAK------KQQELQQRYAE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 524 LQQKQVVAEAQTRVSQLGLQVEgLRRRLEELQQELSLKDQ--ERVAEVSRVRVELQEQNGRLQAELAAQEALREKAAALE 601
Cdd:TIGR00618 442 LCAAAITCTAQCEKLEKIHLQE-SAQSLKEREQQLQTKEQihLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDI 520
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 21450705 602 RQLKVMAS----------DHREALLDRESENASLREKLRLREAEIARIRDEEAQRAS 648
Cdd:TIGR00618 521 DNPGPLTRrmqrgeqtyaQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQ 577
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
327-538 |
2.44e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 2.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 327 ATAEQEQLSLSQRQAKELKLEQQEAAERESKLLRDLSAANEKNLLLQNQVDELERKFRCQQEQLFQTRQEMTSMSAELKM 406
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 407 RAIQAEERLDMEKRRCRQS----LEDSESL-----RIKEVEHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKA--A 475
Cdd:COG4942 102 QKEELAELLRALYRLGRQPplalLLSPEDFldavrRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAllA 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 21450705 476 ALSERGQAEEELIKAKSQARLEEQQRLAHLEDKLRLLAQARDEAQGACLQQKQVVAEAQTRVS 538
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
217-558 |
2.65e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 2.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 217 LRAVEQAMGHSQDRLTTFQENQARTHVLSKEVQHLREEKSKQFLDLMETIDKQREEMAKSSRASAARVGQLQEALNERHS 296
Cdd:COG1196 416 LERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 297 IINALKAKLQMTEAALALSEQKAQD-------------------LGELLATAEQEQLSLSQRQAKELKLEQQEAAERESK 357
Cdd:COG1196 496 LLEAEADYEGFLEGVKAALLLAGLRglagavavligveaayeaaLEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT 575
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 358 LLRDLSAANEKNLLLQNQVDELERKFRCQQEQLFQTRQEMTSMSAELKMRAIQAEERLDMEKRRCRQSLEDSESLRIKEV 437
Cdd:COG1196 576 FLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEG 655
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 438 EHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKAAALSERGQAEEELIKAKSQARLEEQQRLAHLEDKLRLLAQARD 517
Cdd:COG1196 656 GSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAERE 735
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 21450705 518 EAQGACLQQKQVVAEAQTRVSQLGLQVEGLRRRLEELQQEL 558
Cdd:COG1196 736 ELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
300-601 |
2.67e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 2.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 300 ALKAKLQMTEAALALSEQKAQdlgELLATAEQEQLSLSQRQAKELKLEQQEAAERESKLLRDLSAANEKNLLL----QNQ 375
Cdd:TIGR02169 215 ALLKEKREYEGYELLKEKEAL---ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeeQLR 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 376 VDELERKFRCQQEQLFQTRQEMTSMSAELKMRAIQAEERLDMEKRRCRQSLEDSESLRiKEVEHMTRHLEESEKAMQERV 455
Cdd:TIGR02169 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER-KRRDKLTEEYAELKEELEDLR 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 456 QRLeaarlsleEELSRVKAAALSERGQAEEELIKAKSQaRLEEQQRLAHLEDKLRLLAQARDEAQGACLQQKQVVAEAQT 535
Cdd:TIGR02169 371 AEL--------EEVDKEFAETRDELKDYREKLEKLKRE-INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 21450705 536 RVSQLGLQVEGLRRRLEELQQELS------LKDQERVAEVSRVRVELQEQNGRLQAEL-AAQEALREKAAALE 601
Cdd:TIGR02169 442 EKEDKALEIKKQEWKLEQLAADLSkyeqelYDLKEEYDRVEKELSKLQRELAEAEAQArASEERVRGGRAVEE 514
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
444-616 |
3.55e-06 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 50.24 E-value: 3.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 444 LEESEKAMQERVQRLEA-AR----LSLEEELSRVKAAALSERGQAEEELIKAKSQARLEEQQRLAHLEDKlrllaqarde 518
Cdd:COG2433 352 FERVEKKVPPDVDRDEVkARvirgLSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQ---------- 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 519 aqgaclqqkqvVAEAQTRVSQLGLQVEGLRRRLEELQQELSLKDQERVAEVSRVR--VELQEQNGRLQAELA-AQEALRE 595
Cdd:COG2433 422 -----------VERLEAEVEELEAELEEKDERIERLERELSEARSEERREIRKDReiSRLDREIERLERELEeERERIEE 490
|
170 180
....*....|....*....|.
gi 21450705 596 KAAALERQLKVMASDHREALL 616
Cdd:COG2433 491 LKRKLERLKELWKLEHSGELV 511
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
217-640 |
4.03e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 4.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 217 LRAVEQAMGHSQDRLTTFQENQARTHVLSKEVQHLREEKSKQfldlmeTIDKQREEMAKSSRASAARVGQLQEALNERHS 296
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEEL------REELEKLEKLLQLLPLYQELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 297 IINALKAKLQMTEAALALSEQKAQDLGELLATAEQEQLSLSQRQAKELK---LEQQEAAERESKLLRDLSAANEKNLLLQ 373
Cdd:COG4717 147 RLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQdlaEELEELQQRLAELEEELEEAQEELEELE 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 374 NQVDELERKFRCQQEQLFQTRQEMTSMSAELKMRAIQAEERLDMEKRRCRQSLEDSESLRIKEVEHMTRHLEESEKAMQE 453
Cdd:COG4717 227 EELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 454 RVQRLEAARLSLEEELSRVKAAALSERGQAEEELIKAKSQARLEEQQRLAHLEDKLRLLAQARDEAQGACLQQKQVVAEA 533
Cdd:COG4717 307 LQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEE 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 534 QTRVSQLGLQVEGLRRRLEELQQELSLKDQERVAEVSRV-RVELQEQNGRLQAELAA----QEALREKAAALERQLKVMA 608
Cdd:COG4717 387 LRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALdEEELEEELEELEEELEEleeeLEELREELAELEAELEQLE 466
|
410 420 430
....*....|....*....|....*....|..
gi 21450705 609 SDHReaLLDRESENASLREKLRLREAEIARIR 640
Cdd:COG4717 467 EDGE--LAELLQELEELKAELRELAEEWAALK 496
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
252-647 |
5.22e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 49.96 E-value: 5.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 252 REEKSKQFLDLMETIDKQREEMAKSSRASAARVGQLqEALNERHSI----INALKAKLQMTEAALALSEQKAQ---DLGE 324
Cdd:PRK04863 281 RRVHLEEALELRRELYTSRRQLAAEQYRLVEMAREL-AELNEAESDleqdYQAASDHLNLVQTALRQQEKIERyqaDLEE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 325 LLATAEQeqlslsQRQAKELKLEQQEAAEREskllrdLSAANEKNLLLQNQVDELERKFRCQQEQLFQTRQemtsmsael 404
Cdd:PRK04863 360 LEERLEE------QNEVVEEADEQQEENEAR------AEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQ--------- 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 405 kmrAIQAEERLdmekrrcrQSLEDSESLRIKEVEHMTRHLEESEKAMQERV----QRL---EAARLSLEEELSRVKAAAL 477
Cdd:PRK04863 419 ---AVQALERA--------KQLCGLPDLTADNAEDWLEEFQAKEQEATEELlsleQKLsvaQAAHSQFEQAYQLVRKIAG 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 478 S-ERGQAEE---ELIKAKSQARLEEQQ------RLAHLEDKLRLLAQARDEAQGACLQQKQVVAEAqtrvSQLGLQVEGL 547
Cdd:PRK04863 488 EvSRSEAWDvarELLRRLREQRHLAEQlqqlrmRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDE----DELEQLQEEL 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 548 RRRLEELQQELSlKDQERVAEVSRVRVELQEQNGRLQAELAAQEALREKAAALERQLKvmasdhrEALLDRES-ENASLR 626
Cdd:PRK04863 564 EARLESLSESVS-EARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSG-------EEFEDSQDvTEYMQQ 635
|
410 420
....*....|....*....|.
gi 21450705 627 EKLRLREAEIARIRDEEAQRA 647
Cdd:PRK04863 636 LLERERELTVERDELAARKQA 656
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
481-654 |
9.48e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 9.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 481 GQAEEELIKAKSQARLEEQQRLAHLEDKLRLLAQARDEAQG---ACLQQKQV------VAEAQTRVSQLGLQVEGLRR-- 549
Cdd:COG4913 605 GFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQErreALQRLAEYswdeidVASAEREIAELEAELERLDAss 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 550 -RLEELQQELSlKDQERVAEVSRVRVELQEQNGRLQAELAAQEALREKAAALERQLKVMASDHREALLDRESENASLREK 628
Cdd:COG4913 685 dDLAALEEQLE-ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAV 763
|
170 180
....*....|....*....|....*.
gi 21450705 629 LRLREAEIARIRDEEAQRASFLQNAV 654
Cdd:COG4913 764 ERELRENLEERIDALRARLNRAEEEL 789
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
327-640 |
1.62e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.19 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 327 ATAEQEQLSLSQRQAK-ELKLEQQEAAERESKLLRDLSAANEKNLLLQNQVDELERKFRCQQEQLFQTRQEMTSMSAELK 405
Cdd:pfam15921 294 ANSIQSQLEIIQEQARnQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESG 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 406 MRAIQAEERL-DMEKRRCRQSLEDSESLRIKE--------VEHMTRHLEESEKamqeRVQRLEAARLSLEEELsrvkaaa 476
Cdd:pfam15921 374 NLDDQLQKLLaDLHKREKELSLEKEQNKRLWDrdtgnsitIDHLRRELDDRNM----EVQRLEALLKAMKSEC------- 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 477 lseRGQAEEEL--IKAKSQARLEEQQRLAHLEDKLRLLAQARDEAQG----------------ACLQQKQVVAEA-QTRV 537
Cdd:pfam15921 443 ---QGQMERQMaaIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAkkmtlessertvsdltASLQEKERAIEAtNAEI 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 538 SQLGLQVEGLRRRLEELQQE---------------LSLKDQERVAEVSRVRVE----LQEQNGRLQAELAAQEALREKAA 598
Cdd:pfam15921 520 TKLRSRVDLKLQELQHLKNEgdhlrnvqtecealkLQMAEKDKVIEILRQQIEnmtqLVGQHGRTAGAMQVEKAQLEKEI 599
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 21450705 599 ALER----QLKVMASDHREALLDRESENASLR-EKLRLREAEIARIR 640
Cdd:pfam15921 600 NDRRlelqEFKILKDKKDAKIRELEARVSDLElEKVKLVNAGSERLR 646
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
199-630 |
4.43e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.04 E-value: 4.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 199 NRTLWRLDLaGNNIPGDVLRAveqamgHSQDRLTTFQENQARTHVLSKEVQHLREEKskqfldlMETIDKQREEMAKSSR 278
Cdd:pfam15921 400 NKRLWDRDT-GNSITIDHLRR------ELDDRNMEVQRLEALLKAMKSECQGQMERQ-------MAAIQGKNESLEKVSS 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 279 ASAarvgQLQEALNERHSIINALKAKlQMTeaaLALSEQKAQDLGELLATAEQEQLSLSQRQAK-----ELKLEQQEAAE 353
Cdd:pfam15921 466 LTA----QLESTKEMLRKVVEELTAK-KMT---LESSERTVSDLTASLQEKERAIEATNAEITKlrsrvDLKLQELQHLK 537
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 354 RESKLLRDLSAANEKNLLLQNQVDELERKFRCQQEQLFQTRQEMTSMSAELKMRAIQAEERLDMEKRRCRQ--SLEDSES 431
Cdd:pfam15921 538 NEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEfkILKDKKD 617
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 432 LRIKEVEHMTRHLE-ESEKAMQERVQRLEAAR--------LSLEEELSRVKAAALSERGQAEEELIKAKSQARLEEQQRL 502
Cdd:pfam15921 618 AKIRELEARVSDLElEKVKLVNAGSERLRAVKdikqerdqLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKL 697
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 503 A-HLEDKLRLLAQARD---EAQGACLQQKQVVAEAQTRVSQLGLQVEGLRRRLEELQQELSLKDQER----------VAE 568
Cdd:pfam15921 698 KmQLKSAQSELEQTRNtlkSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKhflkeeknklSQE 777
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 21450705 569 VSRVRVELQEQNGRLQAELAAQEALREKAAALERQLKVMASDHREAL-LDRESENASLREKLR 630
Cdd:pfam15921 778 LSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQdIIQRQEQESVRLKLQ 840
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
404-648 |
5.06e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 5.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 404 LKMRAIQAEERLDmekrRCRQSLEDSESLrIKEVEHMTRHLE-ESEKAmqERVQRLEAARLSLE--------EELSRVKA 474
Cdd:TIGR02168 170 YKERRKETERKLE----RTRENLDRLEDI-LNELERQLKSLErQAEKA--ERYKELKAELRELElallvlrlEELREELE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 475 AALSERGQAEEELIKAKSQARlEEQQRLAHLEDKLRLLAQARDEAQGACLQQKQVVAEAQTRVSQLGLQVEGLRRRLEEL 554
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQ-ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 555 QQEL------SLKDQERVAEVSRVRVELQEQNGRLQAELAAQEALREKAAALERQLKVMASDHREALLDRESENASLREK 628
Cdd:TIGR02168 322 EAQLeeleskLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
|
250 260
....*....|....*....|
gi 21450705 629 LRLREAEIARIRDEEAQRAS 648
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQ 421
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
217-647 |
7.07e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 7.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 217 LRAVEQAMGHSQDRLttfQENQARTHVLSKEVQHLRE--EKSKQFLDLMETIDKQREEMAKSSRaSAARVGQLQEALNER 294
Cdd:PRK03918 254 KRKLEEKIRELEERI---EELKKEIEELEEKVKELKElkEKAEEYIKLSEFYEEYLDELREIEK-RLSRLEEEINGIEER 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 295 HSIINALKAKLQMTE----------AALALSEQKAQDLGELLATAEQEQLSLSQRQAKELKLEQQEAAERESKLLRDLSA 364
Cdd:PRK03918 330 IKELEEKEERLEELKkklkelekrlEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISK 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 365 ANEKNLLLQNQVDELER--------KFRC-----------QQEQLFQTRQEMTSMSAELKmRAIQAEERLDMEKRRCRQS 425
Cdd:PRK03918 410 ITARIGELKKEIKELKKaieelkkaKGKCpvcgrelteehRKELLEEYTAELKRIEKELK-EIEEKERKLRKELRELEKV 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 426 LEDSESLR--------IKEVEHMTR--HLEESEKA------MQERVQRLEAARLSLEEELSRVK------AAALSERGQA 483
Cdd:PRK03918 489 LKKESELIklkelaeqLKELEEKLKkyNLEELEKKaeeyekLKEKLIKLKGEIKSLKKELEKLEelkkklAELEKKLDEL 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 484 EEELIKAKSQARLEEQQRLAHLEDKLRLLAQARDE-------------AQGACLQQKQVVAEAQTRVSQLGLQVEGLRRR 550
Cdd:PRK03918 569 EEELAELLKELEELGFESVEELEERLKELEPFYNEylelkdaekelerEEKELKKLEEELDKAFEELAETEKRLEELRKE 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 551 LEELQQELSlkdQERVAEVSRVRVELQEQNGRLQAELAAQEALREKAAALERQLKVMASDHREALLDRESENASLREKLR 630
Cdd:PRK03918 649 LEELEKKYS---EEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEE 725
|
490
....*....|....*..
gi 21450705 631 LREaEIARIRDEEAQRA 647
Cdd:PRK03918 726 LRE-KVKKYKALLKERA 741
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
330-661 |
1.29e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 330 EQEQLSLSQRQAKELKLEQQEAAERESKLLRDLSAANEKNLLLQNQVDELERKFRCQQEQLFQTRQEMTSMSAELKMRAI 409
Cdd:pfam02463 181 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 410 QAEERLDMEKRRcrqslEDSESLRIKEVEHMTRHLEESEKAMQERVQRLEaarLSLEEELSRVKAAALSERGQAEEELIK 489
Cdd:pfam02463 261 EKEEEKLAQVLK-----ENKEEEKEKKLQEEELKLLAKEEEELKSELLKL---ERRKVDDEEKLKESEKEKKKAEKELKK 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 490 AKSQARLEEQQRLAHLEDKLRLLAQARDEAQgacLQQKQVVAEAQTRVSQLGLQvEGLRRRLEELQQELSLKDQErVAEV 569
Cdd:pfam02463 333 EKEEIEELEKELKELEIKREAEEEEEEELEK---LQEKLEQLEEELLAKKKLES-ERLSSAAKLKEEELELKSEE-EKEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 570 SRVRVELQEQNGRLQAELAAQEALREKAAALERQLKVMASDHREALLDRESENASLREKLRLREAEIARIRDEEAQRASF 649
Cdd:pfam02463 408 QLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLE 487
|
330
....*....|..
gi 21450705 650 LQNAVLAYVQAS 661
Cdd:pfam02463 488 LLLSRQKLEERS 499
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
426-610 |
1.55e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 426 LEDSESLRIKEVEHMTRHLEESEKAMQERVQRLEAARLSLEEE-----LSRVKAAALSERGQAEEELIKAKSQaRLEEQQ 500
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKnglvdLSEEAKLLLQQLSELESQLAEARAE-LAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 501 RLAHLEDKLRLLAQARDEAQGACLQQ--KQVVAEAQTRVSQLGL-------QVEGLRRRLEELQQELSLKDQERVAEVSR 571
Cdd:COG3206 241 RLAALRAQLGSGPDALPELLQSPVIQqlRAQLAELEAELAELSArytpnhpDVIALRAQIAALRAQLQQEAQRILASLEA 320
|
170 180 190
....*....|....*....|....*....|....*....
gi 21450705 572 VRVELQEQNGRLQAELAAQEALREKAAALERQLKVMASD 610
Cdd:COG3206 321 ELEALQAREASLQAQLAQLEARLAELPELEAELRRLERE 359
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
491-652 |
1.86e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 491 KSQARLEEQQRLAHLEDKLrllaqarDEAQGACLQQKQVVAEAQTRVSQLGLQVEGLRRRLEELQQELSL--KDQERVAE 568
Cdd:TIGR02168 668 TNSSILERRREIEELEEKI-------EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAlrKDLARLEA 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 569 VSRVRVELQEQNGRLQAELAAQEALREKAAALERQLKVMASDHREAL----LDRESENASLREKLRLREAEIARIRDEEA 644
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELeaqiEQLKEELKALREALDELRAELTLLNEEAA 820
|
....*...
gi 21450705 645 QRASFLQN 652
Cdd:TIGR02168 821 NLRERLES 828
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
360-640 |
1.92e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.78 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 360 RDLSAANEKNLLLQNQVDELERKFRCQQEQLFQTrQEMTSMSAELKMRAIQAEERLDMEKRRCRQSLEDSESlRIKEVEH 439
Cdd:pfam01576 12 EELQKVKERQQKAESELKELEKKHQQLCEEKNAL-QEQLQAETELCAEAEEMRARLAARKQELEEILHELES-RLEEEEE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 440 MTRHLEESEKAMQERVQRLEA-------------------------------------ARLSLEEELSRVKAAALSERGQ 482
Cdd:pfam01576 90 RSQQLQNEKKKMQQHIQDLEEqldeeeaarqklqlekvtteakikkleedillledqnSKLSKERKLLEERISEFTSNLA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 483 AEEELIKAKSQARLEEQQRLAHLEDKLRLLAQARDEAQGACLQQKQVVAEAQTRVSQLGLQVEGLR----RRLEELQQEL 558
Cdd:pfam01576 170 EEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRaqlaKKEEELQAAL 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 559 SLKDQERVAEVSRVRV--ELQEQNGRLQAELAAQEALREKAAALERQLKVMASDHREALLDRESENASLREKLRLREAEI 636
Cdd:pfam01576 250 ARLEEETAQKNNALKKirELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEV 329
|
....
gi 21450705 637 ARIR 640
Cdd:pfam01576 330 TELK 333
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
389-649 |
3.17e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 43.79 E-value: 3.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 389 QLFQTRQEMTSMSAELKMRAIQAEERLDMEKRRCRQSLEDSESLRIKEVEHMTRHLEESEKAMQERVQRLEAARLSL--E 466
Cdd:COG5185 290 QFENTKEKIAEYTKSIDIKKATESLEEQLAAAEAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIvgE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 467 EELSRVKAAALSERGQAE---EELIKAKSQARLEEQQRLAHLEDKLRLLAQARDEAQGACLQQKQVVAEAQTRVSQLGLQ 543
Cdd:COG5185 370 VELSKSSEELDSFKDTIEstkESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISE 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 544 VEGLRRRLEELQQelSLKDQERVAEVSRVRVELQEQNGRLQAELAAQEALREKAAALERQLKVMASDHREALLDREsena 623
Cdd:COG5185 450 LNKVMREADEESQ--SRLEEAYDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQVA---- 523
|
250 260
....*....|....*....|....*.
gi 21450705 624 sLREKLRLREAEIARIRDEEAQRASF 649
Cdd:COG5185 524 -ESLKDFMRARGYAHILALENLIPAS 548
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
268-647 |
3.29e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 3.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 268 KQREEMAKSSRASAARVGQLQEALNERHSIINALKAKlQMTEAALALSEQKAQD--LGELLATAEQEQLSLSQRQAKELK 345
Cdd:PTZ00121 1098 GKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEAR-KAEDARKAEEARKAEDakRVEIARKAEDARKAEEARKAEDAK 1176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 346 LEQQEAAERESKLLRDLSAANEKNLLLQNQVDELERKFRCQQEQLFQTRQEMTSMSAELKMRAiqaEERLDMEKRRCRQS 425
Cdd:PTZ00121 1177 KAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDA---EEAKKAEEERNNEE 1253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 426 LEDSESLRIKEVEHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKAAALSERGQAEEELIKAKSQARLEEQQRLAHL 505
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADA 1333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 506 EDKLRLLAQARDEAQGACLQQKQVVAEA--------QTRVSQLGLQVEGLRRRLEELQQ--ELSLKDQERVAEVSRVRVE 575
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAaeekaeaaEKKKEEAKKKADAAKKKAEEKKKadEAKKKAEEDKKKADELKKA 1413
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 21450705 576 LQEQNGRLQAELAAQEALREKAAALERQLKVMASD-HREALLDRESENASLREKLRlREAEIARIRDEEAQRA 647
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEaKKKAEEAKKAEEAKKKAEEA-KKADEAKKKAEEAKKA 1485
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
428-614 |
3.72e-04 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 43.26 E-value: 3.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 428 DSESLRIKEVEHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKAA---ALSERGQAEEELIKAKSQARL---EEQQR 501
Cdd:PRK09510 76 RAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAakqAALKQKQAEEAAAKAAAAAKAkaeAEAKR 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 502 LAHLEDKLRLLAQARDEAQgaclQQKQVVAEAQTRvsqlgLQVEGLRRRLEELQQELSLKDQERVAevsrvrvELQEQNG 581
Cdd:PRK09510 156 AAAAAKKAAAEAKKKAEAE----AAKKAAAEAKKK-----AEAEAAAKAAAEAKKKAEAEAKKKAA-------AEAKKKA 219
|
170 180 190
....*....|....*....|....*....|...
gi 21450705 582 RLQAELAAQEALREKAAALERQLKVMASDHREA 614
Cdd:PRK09510 220 AAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAA 252
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
227-406 |
3.78e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 3.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 227 SQDRLTTFQENQARTHVLSKEVQHLREEKSKQFLDLMETIDKQREEMAKSSRASAARVGQLQEALNERHSIINALKAKLQ 306
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 307 MTEAALALSEQKAQDLGELLATAEQEQLSLSQRQAKELKLEQQEAAERESKLLRDLSAANEKnllLQNQVDELERKFRCQ 386
Cdd:TIGR02168 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELER---LEEALEELREELEEA 473
|
170 180
....*....|....*....|
gi 21450705 387 QEQLFQTRQEMTSMSAELKM 406
Cdd:TIGR02168 474 EQALDAAERELAQLQARLDS 493
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
146-212 |
3.83e-04 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 39.04 E-value: 3.83e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 21450705 146 LQRLDLRNNQISHKGAEelalALKGNTTLQQLDLRWNNVGLLGGRALMnCLPSnrtLWRLDLAGNNI 212
Cdd:pfam13855 3 LRSLDLSNNRLTSLDDG----AFKGLSNLKVLDLSNNLLTTLSPGAFS-GLPS---LRYLDLSGNRL 61
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
238-512 |
4.02e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 43.74 E-value: 4.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 238 QARTHVLSKEVQHLREEKSKQFL------DLMETIDKQREEMAKSSRASAARVGQLQEALNERHSI---INALKAKLQMT 308
Cdd:PLN02939 103 QRDEAIAAIDNEQQTNSKDGEQLsdfqleDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALqgkINILEMRLSET 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 309 EAALALSEQKAQDLGELLATAEQEQLSLSQRQAKElkleqqeaAERESKLLRDLSAANEKNLLLQNQVDELERK---FRC 385
Cdd:PLN02939 183 DARIKLAAQEKIHVEILEEQLEKLRNELLIRGATE--------GLCVHSLSKELDVLKEENMLLKDDIQFLKAElieVAE 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 386 QQEQLFQTRQEMTSMSA---ELKMRAIQAEErlDMEKRRCRQ---------SLEDSESLRIKEVEHMTRHLEESEKaMQE 453
Cdd:PLN02939 255 TEERVFKLEKERSLLDAslrELESKFIVAQE--DVSKLSPLQydcwwekveNLQDLLDRATNQVEKAALVLDQNQD-LRD 331
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 454 RVQRLEAarlSLEE-----------ELSRVKAAALSERGQAEEELIkaKSQARLeEQQRLAHLEDKLRLL 512
Cdd:PLN02939 332 KVDKLEA---SLKEanvskfssykvELLQQKLKLLEERLQASDHEI--HSYIQL-YQESIKEFQDTLSKL 395
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
215-628 |
4.96e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 4.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 215 DVLRAVEQAMGHSQDRLTTF-QENQARTHVLS-----KEVQHLREEKSKQFLDLMETIDKQREEMAKSSRASAARVGQLQ 288
Cdd:pfam05483 363 ELLRTEQQRLEKNEDQLKIItMELQKKSSELEemtkfKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELI 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 289 EALNERHSIINALKAKLQMTEAALALSEQKAQDLGELLATAEQEQLSLSQRQAKeLKLEQQEAAERESKLLRDLSAANEK 368
Cdd:pfam05483 443 FLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDK-LLLENKELTQEASDMTLELKKHQED 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 369 NLLLQNQVDELERKFRCQQEQLFQTRQEMTSMSAELKMRAIQAEERLD-------------MEKRRCRQSLEDSESLRIK 435
Cdd:pfam05483 522 IINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDkseenarsieyevLKKEKQMKILENKCNNLKK 601
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 436 EVEHMTRHLEE------------SEKAMQERVQRLEAARLSLEEELSRVKAAALSERGQAEEELIKAKSQARLEEQQRla 503
Cdd:pfam05483 602 QIENKNKNIEElhqenkalkkkgSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEK-- 679
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 504 hledklrllaqARDEAQGACLQQKQVVAEAQTRVSQLGLQVEGLRRR----LEELQQELSLKdQERVAEVSRVRVELQEQ 579
Cdd:pfam05483 680 -----------AKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQydkiIEERDSELGLY-KNKEQEQSSAKAALEIE 747
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 21450705 580 NGRLQAELaaqealrekaAALERQLKVMASDHREALLDRESENASLREK 628
Cdd:pfam05483 748 LSNIKAEL----------LSLKKQLEIEKEEKEKLKMEAKENTAILKDK 786
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
234-643 |
5.94e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.17 E-value: 5.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 234 FQENQARTHVLSKEVQHLREEKSKQFLDLMETIDK--------------QREEMAKSSRASAARVGQLQEalnERHSIIN 299
Cdd:pfam05483 160 LKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKmilafeelrvqaenARLEMHFKLKEDHEKIQHLEE---EYKKEIN 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 300 ALKAKLQMTEAALALSEQKAQDLGELLATAEQEQLSLSQR---QAKELKlEQQEAAERESKLLRDLSAANEKNLLLQNQV 376
Cdd:pfam05483 237 DKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKtklQDENLK-ELIEKKDHLTKELEDIKMSLQRSMSTQKAL 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 377 DE-----------LERKFRCQQEQLFQTRQEMTSMSAELKMRAIQAEERLDMEKRRCRQSlEDSESLRIKEVEHMTRHLE 445
Cdd:pfam05483 316 EEdlqiatkticqLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKN-EDQLKIITMELQKKSSELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 446 ESEKAMQERVQRLEAARLSLEEelsrvKAAALSERGQAEeelikaksqaRLEEQqrLAHLEDKLRLLAQARDEAQGACLQ 525
Cdd:pfam05483 395 EMTKFKNNKEVELEELKKILAE-----DEKLLDEKKQFE----------KIAEE--LKGKEQELIFLLQAREKEIHDLEI 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 526 QKQVVAEAQTRVSQlglQVEGLRRRLEELQ----------QELSLKDQERVAEVSRVRVELQEQ-----NGRLQAE--LA 588
Cdd:pfam05483 458 QLTAIKTSEEHYLK---EVEDLKTELEKEKlknieltahcDKLLLENKELTQEASDMTLELKKHqediiNCKKQEErmLK 534
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 21450705 589 AQEALREKAAALERQLK------VMASDHREALLDRESENASLREKLRLREAEIARIRDEE 643
Cdd:pfam05483 535 QIENLEEKEMNLRDELEsvreefIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENK 595
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
244-601 |
6.17e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 6.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 244 LSKEVQHLREEKSKqfldLMETIDKQREEMAKSSRASAARVGQLQEALNERHSIINALKAKLQMTEAALALSEQKAQDLG 323
Cdd:TIGR04523 216 LESQISELKKQNNQ----LKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLN 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 324 ELlataeqeqlslsqrQAKELKLEQQEAAERESKLLRDLSAANEKNLLLQNQVDELER---KFRCQQEQLFQTRQEMTSM 400
Cdd:TIGR04523 292 QL--------------KSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKiisQLNEQISQLKKELTNSESE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 401 SAELKMRAIQAEERLDMEKRRCRQSLEDSESL--RIKEVEHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKaaals 478
Cdd:TIGR04523 358 NSEKQRELEEKQNEIEKLKKENQSYKQEIKNLesQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLK----- 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 479 ergqaeEELIKAKSQ-ARLEEQQrlAHLEDKLRLLAQARDEaqgaclQQKQVvaeaqtrvSQLGLQVEGLRRRLEELQQE 557
Cdd:TIGR04523 433 ------ETIIKNNSEiKDLTNQD--SVKELIIKNLDNTRES------LETQL--------KVLSRSINKIKQNLEQKQKE 490
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 21450705 558 LSLKDQErVAEVSRVRVELQEQNGRLQAElaaQEALREKAAALE 601
Cdd:TIGR04523 491 LKSKEKE-LKKLNEEKKELEEKVKDLTKK---ISSLKEKIEKLE 530
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
254-486 |
7.14e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 7.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 254 EKSKQFLDLMETIDKQREEMAKSSRAsaarvgQLQEALNERhsiiNALKAKLQMTEAALALSEQKAQDLG---------- 323
Cdd:PRK04863 424 ERAKQLCGLPDLTADNAEDWLEEFQA------KEQEATEEL----LSLEQKLSVAQAAHSQFEQAYQLVRkiagevsrse 493
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 324 ------ELLATAEQEQLSLSQRQAKELKL-------EQQEAAER-----ESKLLRDLSAANEKNLLLQNQVDELE----- 380
Cdd:PRK04863 494 awdvarELLRRLREQRHLAEQLQQLRMRLseleqrlRQQQRAERllaefCKRLGKNLDDEDELEQLQEELEARLEslses 573
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 381 -RKFRCQQEQLFQTRQEMTSMSAELKMRA---IQAEERLDMEKRRCRQSLEDSESLrikeVEHMTRHLEEsEKAMQERVQ 456
Cdd:PRK04863 574 vSEARERRMALRQQLEQLQARIQRLAARApawLAAQDALARLREQSGEEFEDSQDV----TEYMQQLLER-ERELTVERD 648
|
250 260 270
....*....|....*....|....*....|
gi 21450705 457 RLEAARLSLEEELSRvkaaaLSERGQAEEE 486
Cdd:PRK04863 649 ELAARKQALDEEIER-----LSQPGGSEDP 673
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
253-480 |
7.55e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 7.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 253 EEKSKQFLDLMETIDKQREEMAKSSRASAARVGQLQEALNERHSIINALKAKLQMTEAALALSEQKAQDLGELLATAEQE 332
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 333 QLSLSQRQAKELKLEQQEAAEreskLLRDLSAANEKNLLLQNQVDELERkfrcQQEQLFQTRQEMTSMSAELK-MRAIQA 411
Cdd:COG4942 113 LYRLGRQPPLALLLSPEDFLD----AVRRLQYLKYLAPARREQAEELRA----DLAELAALRAELEAERAELEaLLAELE 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 412 EERLDMEK-RRCRQSLEDSESLRIKEVEHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKAAALSER 480
Cdd:COG4942 185 EERAALEAlKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
264-559 |
8.31e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 8.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 264 ETIDKQREEMAKSSRASAARVGQLQEA-----LNERHSIINALKAKLQMTEAALalseqkaQDLGELLATAEQEQLSLSQ 338
Cdd:pfam12128 214 PKSRLNRQQVEHWIRDIQAIAGIMKIRpeftkLQQEFNTLESAELRLSHLHFGY-------KSDETLIASRQEERQETSA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 339 RQAKELKLEQQEAAERESKLLRDLSAANEKNLLLQNQVDELE-----------RKFRCQQEQLFQTRQEMTSMSAELKM- 406
Cdd:pfam12128 287 ELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEdqhgafldadiETAAADQEQLPSWQSELENLEERLKAl 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 407 ----RAIQA--EERLDMEKRRCRQSLEDSESLRIKEVEHMTRHLEESEKAMQERVQ----RLEAARLSLEEELSRVKAAA 476
Cdd:pfam12128 367 tgkhQDVTAkyNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESelreQLEAGKLEFNEEEYRLKSRL 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 477 LSERGQ-----AEEELIKAKSQarleEQQRLAHLEDKLRLLAQARDEAQGACLQQKQVVAEAQTRVSQLGLQVEGLRRRL 551
Cdd:pfam12128 447 GELKLRlnqatATPELLLQLEN----FDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSAL 522
|
....*...
gi 21450705 552 EELQQELS 559
Cdd:pfam12128 523 DELELQLF 530
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
338-646 |
9.27e-04 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 42.16 E-value: 9.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 338 QRQAKELKLEQQEAAERESkLLRDLSAANEKNLLLQNQVDELERKFRCQQEQLFQTRqemtsMSAELKMRAIQAEERLDM 417
Cdd:pfam02029 12 RRRAREERRRQKEEEEPSG-QVTESVEPNEHNSYEEDSELKPSGQGGLDEEEAFLDR-----TAKREERRQKRLQEALER 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 418 EKRRCRQSLEDSESLrikEVEHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKAAA-----LSERGQAEEELIKAKS 492
Cdd:pfam02029 86 QKEFDPTIADEKESV---AERKENNEEEENSSWEKEEKRDSRLGRYKEEETEIREKEYQenkwsTEVRQAEEEGEEEEDK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 493 QARLEEQQRLAHLEDKLRLLAQARDeaqgaclqqKQVVAEAQTRVSQLGLQVEGLRRRLEELQQELSLKDQERVAEVSRV 572
Cdd:pfam02029 163 SEEAEEVPTENFAKEEVKDEKIKKE---------KKVKYESKVFLDQKRGHPEVKSQNGEEEVTKLKVTTKRRQGGLSQS 233
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 21450705 573 RVELQEQNGRLQAELAAQEALREKAAALERQLKVMASDHREALLDRESENASLREKLRLREAEIARIRDEEAQR 646
Cdd:pfam02029 234 QEREEEAEVFLEAEQKLEELRRRRQEKESEEFEKLRQKQQEAELELEELKKKREERRKLLEEEEQRRKQEEAER 307
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
238-651 |
9.85e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.52 E-value: 9.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 238 QARTHVLSKEVQHLR-----EEKSKQFLDLMETIDKQREEMAKSSRASAARVGQLQEALNERHS--------IINALKAK 304
Cdd:pfam12128 319 KDRSELEALEDQHGAfldadIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSkikeqnnrDIAGIKDK 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 305 LQMTEAALALSEQKAQDLGELLATAEQEQLSLSQRQAKELKLEQQEAAERESKLLRDLSAANEKNLLLQNQVDELERKfR 384
Cdd:pfam12128 399 LAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIERA-R 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 385 CQQEQLFQTRQEMTSMSAELKMRAIQAEERLDMEKRRC--RQSLEDSESLRIKEVEHMTRHLEESEKAMQE--------- 453
Cdd:pfam12128 478 EEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLeeRQSALDELELQLFPQAGTLLHFLRKEAPDWEqsigkvisp 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 454 ----------------------------RVQRLEAARLSLEEELSRVKAAALSERGQAEEELIKAKSQ------ARLEEQ 499
Cdd:pfam12128 558 ellhrtdldpevwdgsvggelnlygvklDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEqlvqanGELEKA 637
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 500 QRlaHLEDKLRLLAQAR-------DEAQGACLQQKQVVAEAQTRVSQLGLQVEGLRRRLEELQQELSLKDQERVAEVSRV 572
Cdd:pfam12128 638 SR--EETFARTALKNARldlrrlfDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTE 715
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 573 RVE-LQEQNGRLQAELAA-QEALREKAAALERQLKVMASDHREALLDR---ESENASLREKLRLREAEIARIRDEEAQRA 647
Cdd:pfam12128 716 KQAyWQVVEGALDAQLALlKAAIAARRSGAKAELKALETWYKRDLASLgvdPDVIAKLKREIRTLERKIERIAVRRQEVL 795
|
....
gi 21450705 648 SFLQ 651
Cdd:pfam12128 796 RYFD 799
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
444-594 |
1.26e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.49 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 444 LEESEKA-MQERVQRLEAARLSLEEELSRVKAaalsergqaeeeLIKAKSQARLEEQQRLAhledklrLLAQARDEaqga 522
Cdd:PRK09039 71 LERQGNQdLQDSVANLRASLSAAEAERSRLQA------------LLAELAGAGAAAEGRAG-------ELAQELDS---- 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 523 clqQKQVVAEAQTRVSQLGLQVEGLRRRLEELQQELSL---KDQE------------------RVAEVSRVRVELqeqNG 581
Cdd:PRK09039 128 ---EKQVSARALAQVELLNQQIAALRRQLAALEAALDAsekRDREsqakiadlgrrlnvalaqRVQELNRYRSEF---FG 201
|
170
....*....|...
gi 21450705 582 RLQAELAAQEALR 594
Cdd:PRK09039 202 RLREILGDREGIR 214
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
274-480 |
1.56e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 274 AKSSRASAARVGQLQEALNERHSIINALKAKLQMTEAALALSEQKAQDLGELLATAEQE------QLSLSQRQAKELKLE 347
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQElaaleaELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 348 QQEAAERESKLLRDLSAANEKN----LLLQNQVDELERKFRCQQEQLFQTRQEMTSMSAELK----MRAIQAEERLDMEK 419
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPplalLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAelaaLRAELEAERAELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 21450705 420 RRCRQSLEDSE-SLRIKEVEHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKAAALSER 480
Cdd:COG4942 179 LLAELEEERAAlEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
84-212 |
1.82e-03 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 41.07 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 84 ANTVLRFLDLKGNNLRAAGAEALGKLLQQNKSIQSLTLEWNSLGTWDDAFATFCGGLAANGALQRLDLRNNQIShkgaeE 163
Cdd:COG4886 53 LSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSGNQLT-----D 127
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 21450705 164 LALALKGNTTLQQLDLRWNNVgllggRALMNCLPSNRTLWRLDLAGNNI 212
Cdd:COG4886 128 LPEELANLTNLKELDLSNNQL-----TDLPEPLGNLTNLKSLDLSNNQL 171
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
361-661 |
2.05e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 361 DLSAANEKNLLLQNQVDELERKFRCQQEQLFQTRQEMTSMSAELKMRAIQAEERLDMEKRRCRQSLEDSESLRiKEVEHM 440
Cdd:PRK04863 838 ELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQLDEAEEAK-RFVQQH 916
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 441 TRHLEESEK------AMQERVQRLEAARLSLEEELSRVK--AAALSERGQAEEELIKAKSQARLEE--------QQRLAH 504
Cdd:PRK04863 917 GNALAQLEPivsvlqSDPEQFEQLKQDYQQAQQTQRDAKqqAFALTEVVQRRAHFSYEDAAEMLAKnsdlneklRQRLEQ 996
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 505 LEDKLRLLAQARDEAQGACLQQKQV--------------VAEAQTRVSQLGLQV-----EGLRRRLEELQQELSLKDQER 565
Cdd:PRK04863 997 AEQERTRAREQLRQAQAQLAQYNQVlaslkssydakrqmLQELKQELQDLGVPAdsgaeERARARRDELHARLSANRSRR 1076
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 566 VA---EVSRVRVELQEQNGRLQAElaaqealrEKAAALERQLKVMASDHREALLDRESENASLReklRLREAEIARIRDE 642
Cdd:PRK04863 1077 NQlekQLTFCEAEMDNLTKKLRKL--------ERDYHEMREQVVNAKAGWCAVLRLVKDNGVER---RLHRRELAYLSAD 1145
|
330
....*....|....*....
gi 21450705 643 EAQRASFLQNAVLAYVQAS 661
Cdd:PRK04863 1146 ELRSMSDKALGALRLAVAD 1164
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
445-648 |
2.13e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 445 EESEKAMQERVQRLEAARLSLEEELSRV---KAAALSERGQAEEELikAKSQARLEEQQRLAHLEDKLRllaqardEAQG 521
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYeeqREQARETRDEADEVL--EEHEERREELETLEAEIEDLR-------ETIA 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 522 ACLQQKQVVAEaqtRVSQLGLQVEGLRRRLEELQQELSLKDQERVAeVSRVRVELQEQngrlqaELAAQEALREKAAALE 601
Cdd:PRK02224 269 ETEREREELAE---EVRDLRERLEELEEERDDLLAEAGLDDADAEA-VEARREELEDR------DEELRDRLEECRVAAQ 338
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 21450705 602 RQLKvMASDHREALLDRESENASLREKLRLREAEIARIRDEEAQRAS 648
Cdd:PRK02224 339 AHNE-EAESLREDADDLEERAEELREEAAELESELEEAREAVEDRRE 384
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
302-479 |
2.63e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 302 KAKLQMTEAALALSEQKAQDLGELLATAEQEQLSLSQRQAKELKLEQQ-------EAAERE----SKLLRDLSAANEKNL 370
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYswdeidvASAEREiaelEAELERLDASSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 371 LLQNQVDELERKFRCQQEQLFQTRQEMTSMSAELKmraiQAEERLDMEKRRCRQSLEDSESLRIKEVEHM------TRHL 444
Cdd:COG4913 689 ALEEQLEELEAELEELEEELDELKGEIGRLEKELE----QAEEELDELQDRLEAAEDLARLELRALLEERfaaalgDAVE 764
|
170 180 190
....*....|....*....|....*....|....*
gi 21450705 445 EESEKAMQERVQRLEAARLSLEEELSRVKAAALSE 479
Cdd:COG4913 765 RELRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
339-557 |
2.77e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 339 RQAKELKLEQQEAAEREskllrdLSAANEKNLLLQNQVDELErkfrcQQEQLFQTRQEMTSmsAELKMRAIQAE-ERLDM 417
Cdd:COG4913 609 RAKLAALEAELAELEEE------LAEAEERLEALEAELDALQ-----ERREALQRLAEYSW--DEIDVASAEREiAELEA 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 418 EKRRCRQSLEDSeslrikevehmtRHLEESEKAMQERVQRLEAARLSLEEELSRVKaaalSERGQAEEELikAKSQARLE 497
Cdd:COG4913 676 ELERLDASSDDL------------AALEEQLEELEAELEELEEELDELKGEIGRLE----KELEQAEEEL--DELQDRLE 737
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 498 EQQRLAHLEDKLRLLAQARDEAQGAclQQKQVVAEAQTRVSQLGLQVEGLRRRLEELQQE 557
Cdd:COG4913 738 AAEDLARLELRALLEERFAAALGDA--VERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
218-485 |
3.31e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 3.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 218 RAVEQAMGHSQDRLTTFQEnqarthvlSKEVQHLREEKSKQFLDLMETIDKQREEMAKSSRASAARVGQLQEALNERHSI 297
Cdd:PTZ00121 1564 KKAEEAKKAEEDKNMALRK--------AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKV 1635
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 298 INALKAKLQMTEAALALseQKAQDLGELLATAEQEQLSLSQRQAKELKLEQQEAAERESKLLRDL-----------SAAN 366
Cdd:PTZ00121 1636 EQLKKKEAEEKKKAEEL--KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAeeakkaeelkkKEAE 1713
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 367 EKNLLLQNQVDELERKFRCQQ------------EQLFQTRQEMTSMSAELKMRAIQAEERLDMEKRRCRQSLEDSESLRI 434
Cdd:PTZ00121 1714 EKKKAEELKKAEEENKIKAEEakkeaeedkkkaEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRR 1793
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 21450705 435 KEVEHMTRHLEESEKAMQERVQR-LEAARLSLEEELSRVKAAALSERGQAEE 485
Cdd:PTZ00121 1794 MEVDKKIKDIFDNFANIIEGGKEgNLVINDSKEMEDSAIKEVADSKNMQLEE 1845
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
247-515 |
3.39e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 247 EVQHLREEKSKQFLDLMETIDKQREEMAKSSRASAARVGQLQEALNERHSIINALKAKLQMTEAALALSEQKAQDLGELL 326
Cdd:COG3096 406 DVQQTRAIQYQQAVQALEKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIA 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 327 ATAEQEQLSLSQRQAKELKLEQQEAAERESKLLRDLSAAnEKNLLLQNQVDELERKFRCQQEQLFQTRQEMTSMSAELKM 406
Cdd:COG3096 486 GEVERSQAWQTARELLRRYRSQQALAQRLQQLRAQLAEL-EQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEA 564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 407 RAIQAEERLdmekrrcRQSLEDSESLRIKEVEHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKAAALSERGQAEEE 486
Cdd:COG3096 565 QLEELEEQA-------AEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLE 637
|
250 260
....*....|....*....|....*....
gi 21450705 487 LIKAKSQARLEEQQRLAHLEDKLRLLAQA 515
Cdd:COG3096 638 REREATVERDELAARKQALESQIERLSQP 666
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
278-652 |
3.44e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.79 E-value: 3.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 278 RASAARVGqLQEALNERHSIINALKAKLQmteaalalsEQKAQDLGELLATAEQEqLSLSQRQAKELKLEQQEAAERESK 357
Cdd:PRK02224 170 RASDARLG-VERVLSDQRGSLDQLKAQIE---------EKEEKDLHERLNGLESE-LAELDEEIERYEEQREQARETRDE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 358 LLRDLSAANEKnlllQNQVDELERKFRCQQEQLFQTRQEMTSMSAELKmraiqaeerldmEKRRCRQSLEDSESLRIKEV 437
Cdd:PRK02224 239 ADEVLEEHEER----REELETLEAEIEDLRETIAETEREREELAEEVR------------DLRERLEELEEERDDLLAEA 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 438 EhmtrhLEE-SEKAMQERVQRLEAARLSLEEELSRVKAAALSERGQAE---EELIKAKSQARlEEQQRLAHLEDKLRLLA 513
Cdd:PRK02224 303 G-----LDDaDAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAEslrEDADDLEERAE-ELREEAAELESELEEAR 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 514 QARDEAQGACLQQKQVVAEAQTRVSQLGLQVEGLRRRLEELQQELSlkdqERVAEVSRVRVELQEQNGRLqaelAAQEAL 593
Cdd:PRK02224 377 EAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERD----ELREREAELEATLRTARERV----EEAEAL 448
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 21450705 594 REKAAALERQLKVMASDHREALLDR-------ESENASLREKLRLREAEIARIRD--EEAQRASFLQN 652
Cdd:PRK02224 449 LEAGKCPECGQPVEGSPHVETIEEDrerveelEAELEDLEEEVEEVEERLERAEDlvEAEDRIERLEE 516
|
|
| PTZ00491 |
PTZ00491 |
major vault protein; Provisional |
396-534 |
3.62e-03 |
|
major vault protein; Provisional
Pssm-ID: 240439 [Multi-domain] Cd Length: 850 Bit Score: 40.77 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 396 EMTSMSAElkMRAIQAEERLDMEKRRC--RQSLED---SESLRIK--EVEHMTRHLEESEKAMQERVQRLEAARLSLEEE 468
Cdd:PTZ00491 658 EITTKSQE--AAARHQAELLEQEARGRleRQKMHDkakAEEQRTKllELQAESAAVESSGQSRAEALAEAEARLIEAEAE 735
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 21450705 469 L--SRVKAAALSERGQAEEELIKAKSQARLEEQQRLAHLE-DKLRLLAQARD---EAQGACLQQKQVVAEAQ 534
Cdd:PTZ00491 736 VeqAELRAKALRIEAEAELEKLRKRQELELEYEQAQNELEiAKAKELADIEAtkfERIVEALGRETLIAIAR 807
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
247-638 |
3.91e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 40.49 E-value: 3.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 247 EVQHLREEKSKQFLDLMETIDKQREEMAKSSRASAARVGQLQ------EALNERHSI-------INALKAKLQMTEAALA 313
Cdd:pfam05557 87 ALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQstnselEELQERLDLlkakaseAEQLRQNLEKQQSSLA 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 314 LSEQKAQDLGELLATAEQEQLSLSQRQAkelKLEQQEAAERESKLLRD----LSAANEKNLLLQNQVDELERKFrcqqEQ 389
Cdd:pfam05557 167 EAEQRIKELEFEIQSQEQDSEIVKNSKS---ELARIPELEKELERLREhnkhLNENIENKLLLKEEVEDLKRKL----ER 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 390 LFQTRQEMTSMSAELK--MRAIQAEERLDMEKRRCRQSLEDSeSLRIKEVEHMTRHLEESEKAMQERVQRLEAARLSLEE 467
Cdd:pfam05557 240 EEKYREEAATLELEKEklEQELQSWVKLAQDTGLNLRSPEDL-SRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQ 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 468 ELSRVkaaalseRGQAEEELIKAKSQARLEEQqrlahLEDKLRLLAQARDeaqgaCLQQKQVVAEAQTRVSQLGLQVEGL 547
Cdd:pfam05557 319 ELAQY-------LKKIEDLNKKLKRHKALVRR-----LQRRVLLLTKERD-----GYRAILESYDKELTMSNYSPQLLER 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 548 RRRLEELQQELSLKDQERVAEVSRVRVELQEQNGRLQAELAAQEALREKAAALERQL-KVMASDHREALLDRESENASLR 626
Cdd:pfam05557 382 IEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYsKEEVDSLRRKLETLELERQRLR 461
|
410
....*....|..
gi 21450705 627 EKLRLREAEIAR 638
Cdd:pfam05557 462 EQKNELEMELER 473
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
432-661 |
4.25e-03 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 40.32 E-value: 4.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 432 LRIKEVEHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKaaalsergqaeeELIKAKSQARLEEQQRLAHLEDKLRL 511
Cdd:pfam15709 345 MRRLEVERKRREQEEQRRLQQEQLERAEKMREELELEQQRRF------------EEIRLRKQRLEEERQRQEEEERKQRL 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 512 LAQArdeaqgaclqqkqvvaeAQTRVSQlglQVEGLRRRLEELQQELSLKDQERVAEVSRVRVELQEQngrlqaelaaqe 591
Cdd:pfam15709 413 QLQA-----------------AQERARQ---QQEEFRRKLQELQRKKQQEEAERAEAEKQRQKELEMQ------------ 460
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 592 alrekAAALERQLKVMASDHREALLDRESEnaslREKLRLREAEIARIRDEEAQRASFLQNAVLAYVQAS 661
Cdd:pfam15709 461 -----LAEEQKRLMEMAEEERLEYQRQKQE----AEEKARLEAEERRQKEEEAARLALEEAMKQAQEQAR 521
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
460-570 |
4.70e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.06 E-value: 4.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 460 AARLSLE-----EELSRVKAaalsERGQAEEELIKAKSQARLEEQQRLAHLEDKLRLLAQARDEAQGACLQQKQVVAEAQ 534
Cdd:COG0542 399 AARVRMEidskpEELDELER----RLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQ 474
|
90 100 110
....*....|....*....|....*....|....*....
gi 21450705 535 TRVSQLGLQ---VEGLRRRLEELQQELSLKDQERVAEVS 570
Cdd:COG0542 475 ELKEELEQRygkIPELEKELAELEEELAELAPLLREEVT 513
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
253-490 |
5.15e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.05 E-value: 5.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 253 EEKSKQFLDLMETIDKQREEMAKSSRASAARVGQLQEALNERHSIINALKAKLQMTEAALALSEQKAQDLgellataeQE 332
Cdd:TIGR02169 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDY--------RE 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 333 QLSLSQRQAKELKLEQQEAAERESKLLRDLSAANEKNLLLQNQVDELERKFRCQQEQLFQTRQEMTSMSAELkmraiqae 412
Cdd:TIGR02169 393 KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL-------- 464
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 21450705 413 ERLDMEKRRCRQSLEDSESlRIKEVEHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVkAAALSERGQAEEELIKA 490
Cdd:TIGR02169 465 SKYEQELYDLKEEYDRVEK-ELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGV-HGTVAQLGSVGERYATA 540
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
525-646 |
5.91e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 39.69 E-value: 5.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 525 QQKQVVAEAQTRVSQLGLQVEGLRRRLEELQQELSLKDQERVAEVSRVRV-ELQEQNGRLQAELAAQEALREKAAALERQ 603
Cdd:PRK12705 27 KRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREReELQREEERLVQKEEQLDARAEKLDNLENQ 106
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 21450705 604 LkvmaSDHREALLDRESENASLREKLRLREAEIARIRDEEAQR 646
Cdd:PRK12705 107 L----EEREKALSARELELEELEKQLDNELYRVAGLTPEQARK 145
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
330-588 |
6.73e-03 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 39.47 E-value: 6.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 330 EQEQLSLSQRQAKELKLEQQEAAERESKLLRDLSAANEKNLLLQNQVDELERKFRCQQEQLFQTRQEMTSMSAELKMRAI 409
Cdd:pfam02029 61 EEAFLDRTAKREERRQKRLQEALERQKEFDPTIADEKESVAERKENNEEEENSSWEKEEKRDSRLGRYKEEETEIREKEY 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 410 Q----------AEERLDMEKRRCRQSLEDSESLRIKEVEHMTRHLEESEKAM-------QERVQRLEAARLSLEEELSRV 472
Cdd:pfam02029 141 QenkwstevrqAEEEGEEEEDKSEEAEEVPTENFAKEEVKDEKIKKEKKVKYeskvfldQKRGHPEVKSQNGEEEVTKLK 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 473 KAAALSERGQAEEELIKAKSQARLEEQQRLahleDKLRLLAQARDEAQGACLQQKQvvAEAQTRVSQLGLQVEGLRRRLE 552
Cdd:pfam02029 221 VTTKRRQGGLSQSQEREEEAEVFLEAEQKL----EELRRRRQEKESEEFEKLRQKQ--QEAELELEELKKKREERRKLLE 294
|
250 260 270
....*....|....*....|....*....|....*.
gi 21450705 553 ELQQELSLKDQERVAEVSRVRVELQEQNGRLQAELA 588
Cdd:pfam02029 295 EEEQRRKQEEAERKLREEEEKRRMKEEIERRRAEAA 330
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
289-650 |
7.01e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 39.64 E-value: 7.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 289 EALNERHSIINALKAKLQMTEAALALSEQKAQDLGELL--ATAEQEQLSLSQRQAKELKLEQQEAAERESKLLRDLSAAN 366
Cdd:TIGR00606 186 KALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRdqITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIM 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 367 EKNLLL------QNQVDELERKFRCQQEQLFQTRQEMTSMSAELKMRAIQAEERldmEKRRCRQSLE----DSESLRIKE 436
Cdd:TIGR00606 266 KLDNEIkalksrKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKER---ELVDCQRELEklnkERRLLNQEK 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 437 VEHMTRHLEESEKA----MQERVQRLEAARLSLEEELSRVKAAALSER--GQAEEELIKAKSQARLEEQQRLAHLEDKLR 510
Cdd:TIGR00606 343 TELLVEQGRLQLQAdrhqEHIRARDSLIQSLATRLELDGFERGPFSERqiKNFHTLVIERQEDEAKTAAQLCADLQSKER 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 511 LLAQARDEAQ------GACLQQKQVVAEAQTR----VSQLGLQVEGLRRRLEELQQELSLKDQErvaevsrvrVELQEQN 580
Cdd:TIGR00606 423 LKQEQADEIRdekkglGRTIELKKEILEKKQEelkfVIKELQQLEGSSDRILELDQELRKAERE---------LSKAEKN 493
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 21450705 581 GRLQAELAAQEALREKAAALERQLKvmASDHREALLDRESENASLREKL-RLREAEIARIRDEEAQRASFL 650
Cdd:TIGR00606 494 SLTETLKKEVKSLQNEKADLDRKLR--KLDQEMEQLNHHTTTRTQMEMLtKDKMDKDEQIRKIKSRHSDEL 562
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
413-653 |
7.29e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 39.64 E-value: 7.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 413 ERLDMEKRRCRQSLEDSESLrikevehMTRHLEEsekamQERVQRLEAARlsleEELSRVKAAALSERGQAEEElIKAKS 492
Cdd:PRK02224 223 ERYEEQREQARETRDEADEV-------LEEHEER-----REELETLEAEI----EDLRETIAETEREREELAEE-VRDLR 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 493 QARLEEQQRLAHLEDKLRL-------LAQARDEAQGACLQQKQVVAEAQTRVSQLGLQVEGLRRRLEELQQELSlkdqer 565
Cdd:PRK02224 286 ERLEELEEERDDLLAEAGLddadaeaVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAE------ 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 566 vaevsrvrvELQEQNGRLQAEL-AAQEALREKAAALErQLKVMASDHREALLDRESENASLREKLRLREAEIARIRDEEA 644
Cdd:PRK02224 360 ---------ELREEAAELESELeEAREAVEDRREEIE-ELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREA 429
|
....*....
gi 21450705 645 QRASFLQNA 653
Cdd:PRK02224 430 ELEATLRTA 438
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
261-548 |
9.25e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 39.18 E-value: 9.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 261 DLMETIDKQREEMAKSSRASAARVGQLQEALNERHsiinaLKAKLQMTEAALALSEQKAQDLGELLATAEQEQLSLSQRQ 340
Cdd:TIGR00618 595 RLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQD-----VRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRV 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 341 AKELKLEQQEAAERE-----SKLLRDLSAANEKNLLLQNQVDELE--RKFRCQQEQLFQTRQEMTSMSAELKMRAIQAEE 413
Cdd:TIGR00618 670 LPKELLASRQLALQKmqsekEQLTYWKEMLAQCQTLLRELETHIEeyDREFNEIENASSSLGSDLAAREDALNQSLKELM 749
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21450705 414 RLDMEKRRCRQSLEDSESLRIKEVEHMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKaaalSERGQAEEELIKAKSQ 493
Cdd:TIGR00618 750 HQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIG----QEIPSDEDILNLQCET 825
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 21450705 494 ARLEEQQRLAHLEDKLRLLAQARDEAQ--GACLQQKQVVAEAQTRVSQLGLQVEGLR 548
Cdd:TIGR00618 826 LVQEEEQFLSRLEEKSATLGEITHQLLkyEECSKQLAQLTQEQAKIIQLSDKLNGIN 882
|
|
| |
