|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
3696-3777 |
2.35e-25 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 101.90 E-value: 2.35e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3696 KYLRAESFRKALIYQKKYLLLLLGGFQECEDATLALLARMGGQPAFTdleviTNRPKGFTRFRSAVRVSIAISRMKFLVR 3775
Cdd:pfam10495 1 KLLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDD-----RPSRKPRRKLKSAALAVIAIARMKRLAR 75
|
..
gi 22538393 3776 RW 3777
Cdd:pfam10495 76 EW 77
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
277-1006 |
8.80e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.19 E-value: 8.80e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 277 LEEQDHLLEDYQKKKEdftmQISFLQEKIKVYEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTAD 356
Cdd:TIGR02168 205 LERQAEKAERYKELKA----ELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 357 KLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNhkdsqfetdivqrmeQETQRKLEQLRAE 436
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL---------------DELAEELAELEEK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 437 LDEMygQQIVQMKQELIRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEEL 516
Cdd:TIGR02168 346 LEEL--KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 517 GLILE-----EKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEA 591
Cdd:TIGR02168 424 EELLKkleeaELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 592 EvTNYKIKLEMLEKEKNAVLDRMAESQEAElERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDN---------LGIH 662
Cdd:TIGR02168 504 F-SEGVKALLKNQSGLSGILGVLSELISVD-EGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNelgrvtflpLDSI 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 663 YKQQIDGLQNEMSQKIETMQFEKDNLITKQNQL-------------------ILEISKLKDLQQSLV------------- 710
Cdd:TIGR02168 582 KGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLrkalsyllggvlvvddldnALELAKKLRPGYRIVtldgdlvrpggvi 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 711 NSKSEEMTLQINELQKEIEILRQEEKEkgtLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDM 790
Cdd:TIGR02168 662 TGGSAKTNSSILERRREIEELEEKIEE---LEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 791 LKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEYAC 870
Cdd:TIGR02168 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 871 LLKVKDDLEDSKNKQELEYKSkLKALNEElhLQRINPTTVKMKSSVFDEDktfvaetlEMGEVVEKDTTELMEKLEVTKR 950
Cdd:TIGR02168 819 AANLRERLESLERRIAATERR-LEDLEEQ--IEELSEDIESLAAEIEELE--------ELIEELESELEALLNERASLEE 887
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 22538393 951 EKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRELEIIINHNRA 1006
Cdd:TIGR02168 888 ALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
207-900 |
1.11e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 87.80 E-value: 1.11e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 207 ITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLED 286
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 287 YQKKKEDFTMQISFLQEKIkvyemEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQI 366
Cdd:TIGR02168 314 LERQLEELEAQLEELESKL-----DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 367 VQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNH----KDSQFETDIVQRMEQETQRKLEQLRAELDEMYG 442
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEeaelKELQAELEELEEELEELQEELERLEEALEELRE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 443 ------QQIVQMKQEL--IRQHMAQMEEMKTRHKGE-------MENALRSYSNITVNEDQIK----------------LM 491
Cdd:TIGR02168 469 eleeaeQALDAAERELaqLQARLDSLERLQENLEGFsegvkalLKNQSGLSGILGVLSELISvdegyeaaieaalggrLQ 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 492 NVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQrqleDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLST---- 567
Cdd:TIGR02168 549 AVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGT----EIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYllgg 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 568 ---VEDLKAEIVSASESRKELEL-------------------KHEAEVTNYKIKLEMLEKEKNAVLDRMAEsQEAELERL 625
Cdd:TIGR02168 625 vlvVDDLDNALELAKKLRPGYRIvtldgdlvrpggvitggsaKTNSSILERRREIEELEEKIEELEEKIAE-LEKALAEL 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 626 RTQLLfSHEEELSKLKEDLEiEHRINIEKLKDNLGIHYK------QQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEI 699
Cdd:TIGR02168 704 RKELE-ELEEELEQLRKELE-ELSRQISALRKDLARLEAeveqleERIAQLSKELTELEAEIEELEERLEEAEEELAEAE 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 700 SKLKDLQQSlVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSI 779
Cdd:TIGR02168 782 AEIEELEAQ-IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE 860
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 780 LKDEKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEKNFEV 859
Cdd:TIGR02168 861 IEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 22538393 860 NYQELQEEYACLLKVKDDLEDSKNKQELEYKSKLKALNEEL 900
Cdd:TIGR02168 941 LQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2029-2424 |
7.89e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.03 E-value: 7.89e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2029 DVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQT 2108
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2109 REVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVEDRKHFgaveakpelSLEVQLQAERD 2188
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA---------NLRERLESLER 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2189 AIDRKEKEITNLEEQLEQFREELENKNEEV---QQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDamst 2265
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIeelEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE---- 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2266 qdqhvlfgkfaQIIQEKEVEIDQLNEQVTKLQ---QQLKITTDNKVIEEKNELIRDLETQIEClmsdqecvKRNREEEIE 2342
Cdd:TIGR02168 908 -----------SKRSELRRELEELREKLAQLElrlEGLEVRIDNLQERLSEEYSLTLEEAEAL--------ENKIEDDEE 968
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2343 QLNEVIEKLQQELANIGqKTSMNA----HSLSEEADSLKHQLDVVIAEKLALEQQVETANEEmtfMKNVLKETNFKMNQL 2418
Cdd:TIGR02168 969 EARRRLKRLENKIKELG-PVNLAAieeyEELKERYDFLTAQKEDLTEAKETLEEAIEEIDRE---ARERFKDTFDQVNEN 1044
|
....*.
gi 22538393 2419 TQELFS 2424
Cdd:TIGR02168 1045 FQRVFP 1050
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
160-884 |
2.30e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.49 E-value: 2.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 160 MESELAGKQHEIEELNRELEEMRvtygteglQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQ 239
Cdd:TIGR02168 279 LEEEIEELQKELYALANEISRLE--------QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 240 IQFQQLQASetlrnstHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDKKVENS 319
Cdd:TIGR02168 351 EELESLEAE-------LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 320 NKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQK----------ERQ 389
Cdd:TIGR02168 424 EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARldslerlqenLEG 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 390 SSEEIKQLM-------GTVEELQKRNHKDSQFETDI-----------------VQRMEQETQRKLEQLRA---ELDEMYG 442
Cdd:TIGR02168 504 FSEGVKALLknqsglsGILGVLSELISVDEGYEAAIeaalggrlqavvvenlnAAKKAIAFLKQNELGRVtflPLDSIKG 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 443 QQI------VQMKQELIRQHMAQMEEMKTRHKGEMENAL--------------------RSYSNITVNEDQIK---LMNV 493
Cdd:TIGR02168 584 TEIqgndreILKNIEGFLGVAKDLVKFDPKLRKALSYLLggvlvvddldnalelakklrPGYRIVTLDGDLVRpggVITG 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 494 AINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKA 573
Cdd:TIGR02168 664 GSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 574 EIVSASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAEsQEAELERLRTQlLFSHEEELSKLKEDLeiehrinie 653
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE-LEAQIEQLKEE-LKALREALDELRAEL--------- 812
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 654 klkDNLGIHYKQQIDGLQNEMSQKIETmqfekdnliTKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILrq 733
Cdd:TIGR02168 813 ---TLLNEEAANLRERLESLERRIAAT---------ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL-- 878
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 734 eEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMlkihtpvsQEERLIFLDSIKSKS 813
Cdd:TIGR02168 879 -LNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL--------EVRIDNLQERLSEEY 949
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22538393 814 KDS--VWEKEIEILIEENEDLKQQCIQLNEEIEkqrntfSFAEKNFEV--NYQELQEEYACLLKVKDDLEDSKNK 884
Cdd:TIGR02168 950 SLTleEAEALENKIEDDEEEARRRLKRLENKIK------ELGPVNLAAieEYEELKERYDFLTAQKEDLTEAKET 1018
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
173-790 |
7.42e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.44 E-value: 7.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 173 ELNRELEEMRVTYGtegLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQLQASETLR 252
Cdd:COG1196 217 ELKEELKELEAELL---LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 253 NSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDKKvensnKEEIQEKETIIE 332
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA-----EAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 333 ELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNHKDs 412
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA- 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 413 qfetdivQRMEQETQRKLEQLRAELDEMYGQQIVQMKQELIRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMN 492
Cdd:COG1196 448 -------AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 493 VAINELNIKLQDTNSQKEKLKEELGLILEEK-CALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDL 571
Cdd:COG1196 521 GLAGAVAVLIGVEAAYEAALEAALAAALQNIvVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAA 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 572 KAEIVSASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRIN 651
Cdd:COG1196 601 VDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 652 IEKLKDNLGIHYKQQIDGLQNEMSQKIEtmqfekdnlitkQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEIL 731
Cdd:COG1196 681 LEELAERLAEEELELEEALLAEEEEERE------------LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22538393 732 RQEEKEKGTLEQEVQELQLKTELLEKQMKEKE----------NDLQEKFAQLEAENSILKDEKKTLEDM 790
Cdd:COG1196 749 EEEALEELPEPPDLEELERELERLEREIEALGpvnllaieeyEELEERYDFLSEQREDLEEARETLEEA 817
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
157-968 |
1.18e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 78.19 E-value: 1.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 157 LEMMESELAGKQHEIEELNRELEEMRVtygteglqQLQEFEAAIKQRDGIITQLtanlqqARREKDETMREFLELTEQSQ 236
Cdd:TIGR02169 232 KEALERQKEAIERQLASLEEELEKLTE--------EISELEKRLEEIEQLLEEL------NKKIKDLGEEEQLRVKEKIG 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 237 KLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKI--KVYEMEQDK 314
Cdd:TIGR02169 298 ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELedLRAELEEVD 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 315 KVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEI 394
Cdd:TIGR02169 378 KEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 395 KQLMGTVEELQKRNHKDSQfETDIVQRMEQETQRKLEQLRAELD-----EMYGQQIVQMKQELIRQ---HMAQMEEMKTR 466
Cdd:TIGR02169 458 EQLAADLSKYEQELYDLKE-EYDRVEKELSKLQRELAEAEAQARaseerVRGGRAVEEVLKASIQGvhgTVAQLGSVGER 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 467 HKGEMENALRSYSNITVNED------------QIKLMNVAINELNiKLQDTNSQKEKLKEE------LGLILEEK---CA 525
Cdd:TIGR02169 537 YATAIEVAAGNRLNNVVVEDdavakeaiellkRRKAGRATFLPLN-KMRDERRDLSILSEDgvigfaVDLVEFDPkyePA 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 526 LQRQLED--LVEELSFSREQIQRARQTIAEQEskLNEAHKSLS--TVEDLKAEIVSASESRKELELKHEaevtnykikLE 601
Cdd:TIGR02169 616 FKYVFGDtlVVEDIEAARRLMGKYRMVTLEGE--LFEKSGAMTggSRAPRGGILFSRSEPAELQRLRER---------LE 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 602 MLEKEKNAVLDRMAEsQEAELERLRTQLLFSHEE--ELSKLKEDLEIEHRINIEKLKdnlgihykqQIDGLQNEMSQKIE 679
Cdd:TIGR02169 685 GLKRELSSLQSELRR-IENRLDELSQELSDASRKigEIEKEIEQLEQEEEKLKERLE---------ELEEDLSSLEQEIE 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 680 TMQFEKDNLITKQNQLILEISKLK----DLQQSLVNSKSEEMTLQINELQKEIeilRQEEKEKGTLEQEVQELQLKTELL 755
Cdd:TIGR02169 755 NVKSELKELEARIEELEEDLHKLEealnDLEARLSHSRIPEIQAELSKLEEEV---SRIEARLREIEQKLNRLTLEKEYL 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 756 EKQMKEKENDLQEkfaqleaensiLKDEKKTLEDmlkihtpvSQEERLIFLDSIKSKSKDsvwekeieiLIEENEDLKQQ 835
Cdd:TIGR02169 832 EKEIQELQEQRID-----------LKEQIKSIEK--------EIENLNGKKEELEEELEE---------LEAALRDLESR 883
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 836 CIQLNEEIEKQRNTFSFAEKnfevNYQELQEEYacllkvkddleDSKNKQELEYKSKLKALNEEL-HLQRINPTTVKMKS 914
Cdd:TIGR02169 884 LGDLKKERDELEAQLRELER----KIEELEAQI-----------EKKRKRLSELKAKLEALEEELsEIEDPKGEDEEIPE 948
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22538393 915 SVFDEDKtfVAETLE--------MGEV----------VEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQ 968
Cdd:TIGR02169 949 EELSLED--VQAELQrveeeiraLEPVnmlaiqeyeeVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
156-772 |
2.05e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 2.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 156 HLEMMESELAGKQHEIEELNRELEEMRvtygteglQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQS 235
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELE--------AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 236 QKLQIQFQQLQASETlrnsthsSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDKK 315
Cdd:COG1196 305 ARLEERRRELEERLE-------ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 316 VE--NSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEE 393
Cdd:COG1196 378 EEelEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 394 IKQLMGTVEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQQIVQMK-----QELIRQHMAQMEEMKTRHK 468
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAlllagLRGLAGAVAVLIGVEAAYE 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 469 GEMENALRSYSNITVNEDQIKLMNvAINELNIK-------LQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSR 541
Cdd:COG1196 538 AALEAALAAALQNIVVEDDEVAAA-AIEYLKAAkagratfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYY 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 542 EQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEvtnykIKLEMLEKEKNAVLDRMAESQEAE 621
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSR-----RELLAALLEAEAELEELAERLAEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 622 LERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISK 701
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22538393 702 LKDLQQSL--VNSKSEEmtlQINELQKEIEILrqeEKEKGTLEQEVQELQLKTELLEKQMKEKendLQEKFAQ 772
Cdd:COG1196 772 LEREIEALgpVNLLAIE---EYEELEERYDFL---SEQREDLEEARETLEEAIEEIDRETRER---FLETFDA 835
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
155-898 |
4.57e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 76.26 E-value: 4.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 155 THLEMMESELAGKQHEIEELNRELEEMRvtygteglQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQ 234
Cdd:TIGR02169 294 EKIGELEAEIASLERSIAEKERELEDAE--------ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 235 SQKLQIQFQQLQAsetlrnsTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDK 314
Cdd:TIGR02169 366 LEDLRAELEEVDK-------EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 315 --KVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSE 392
Cdd:TIGR02169 439 leEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKA 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 393 EIKQLMGTVEELqkrnhkdSQFETDIVQRMEQETQRKLEQLRAELDEMYGQQIVQMKQELI-RQHMAQMEEMKTRHKGEM 471
Cdd:TIGR02169 519 SIQGVHGTVAQL-------GSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAgRATFLPLNKMRDERRDLS 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 472 ENALRSYSNITVN----EDQIKLMNVAINELNIKLQDTNSQKE------------KLKEELGLI---------------- 519
Cdd:TIGR02169 592 ILSEDGVIGFAVDlvefDPKYEPAFKYVFGDTLVVEDIEAARRlmgkyrmvtlegELFEKSGAMtggsraprggilfsrs 671
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 520 -LEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTV----EDLKAEIVSASESRKELELKHEA--- 591
Cdd:TIGR02169 672 ePAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIekeiEQLEQEEEKLKERLEELEEDLSSleq 751
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 592 EVTNYKIKLEMLEKEKNAvLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDnlgihykqqIDGLQ 671
Cdd:TIGR02169 752 EIENVKSELKELEARIEE-LEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLRE---------IEQKL 821
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 672 NEMSQKIETMQFEKDNLITKQNQLILEISKLKDlQQSLVNSKSEEMTLQINELQKEieiLRQEEKEKGTLEQEVQELQLK 751
Cdd:TIGR02169 822 NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK-EIENLNGKKEELEEELEELEAA---LRDLESRLGDLKKERDELEAQ 897
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 752 TELLEK---QMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLKIHTPVSQEERLIfldsikskskdsvwekeieiliee 828
Cdd:TIGR02169 898 LRELERkieELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSL------------------------ 953
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 829 nEDLKQQCIQLNEEIEKQRntfsfaeknfEVNYQELQeEYACLLKVKDDLEDSKNKQELEYKSKLKALNE 898
Cdd:TIGR02169 954 -EDVQAELQRVEEEIRALE----------PVNMLAIQ-EYEEVLKRLDELKEKRAKLEEERKAILERIEE 1011
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2059-2745 |
8.14e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.09 E-value: 8.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2059 EKQLEKMRKFLDE-QAIDREHERDVfqqeiQKLEQQLKVVPRFQPISEhqtrEVEQLANHLkektdkcseLLLSKEQLQR 2137
Cdd:TIGR02168 178 ERKLERTRENLDRlEDILNELERQL-----KSLERQAEKAERYKELKA----ELRELELAL---------LVLRLEELRE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2138 DIQERNEEIEKLEFRVRELEQallvedrkhfgaveakpelslevQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEE 2217
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTA-----------------------ELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2218 VQQLHMQLEIQKKesttRLQELEQENklfkddmEKLGLAIKESDAMSTQDQhvlfgkfaQIIQEKEVEIDQLNEQVTKLQ 2297
Cdd:TIGR02168 297 ISRLEQQKQILRE----RLANLERQL-------EELEAQLEELESKLDELA--------EELAELEEKLEELKEELESLE 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2298 QQLKitTDNKVIEEKNELIRDLETQIECLMSD------QECVKRNR----EEEIEQLNEVIEKLQQELANIGQKTSMNA- 2366
Cdd:TIGR02168 358 AELE--ELEAELEELESRLEELEEQLETLRSKvaqlelQIASLNNEierlEARLERLEDRRERLQQEIEELLKKLEEAEl 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2367 HSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEKI----------Q 2436
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFsegvkallknQ 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2437 SIPENSVNVAIDHLS---KDKPELEVVLTE--DALKSLENQTYFKSFE-----ENGKGSIINLETRLLQLESTVSAKDLE 2506
Cdd:TIGR02168 516 SGLSGILGVLSELISvdeGYEAAIEAALGGrlQAVVVENLNAAKKAIAflkqnELGRVTFLPLDSIKGTEIQGNDREILK 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2507 LTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEkVAAALVSQIQLEAvqEYAKFCQDNQTISSE------PERTNIQN 2580
Cdd:TIGR02168 596 NIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDD-LDNALELAKKLRP--GYRIVTLDGDLVRPGgvitggSAKTNSSI 672
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2581 LNQLRE-DELGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEKKLLELQKLLEGNEKKQREKEKKRSPQ 2659
Cdd:TIGR02168 673 LERRREiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2660 DVEVLKTTtelfhsNEESGFFNELEALRAESVATKAELASYKEKAEKLQEELLVKETNMTSLQKDLSQVRDHLAEAKEKL 2739
Cdd:TIGR02168 753 SKELTELE------AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
....*.
gi 22538393 2740 SILEKE 2745
Cdd:TIGR02168 827 ESLERR 832
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
158-1010 |
3.23e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 73.23 E-value: 3.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 158 EMMESELAGKQHEIEELNRELEEmrvtygTEGLQQLQEFEAaikqRDGIItQLTANLQQARREKDeTMREFLELTEQSQ- 236
Cdd:pfam15921 74 EHIERVLEEYSHQVKDLQRRLNE------SNELHEKQKFYL----RQSVI-DLQTKLQEMQMERD-AMADIRRRESQSQe 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 237 ----KLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDftmqisflqekiKVYEMEQ 312
Cdd:pfam15921 142 dlrnQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGK------------KIYEHDS 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 313 DKKVENSNKEEIQEKetIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQE-----IKNMKLELTNSKQKE 387
Cdd:pfam15921 210 MSTMHFRSLGSAISK--ILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDrieqlISEHEVEITGLTEKA 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 388 RQSSEEIKQLMGTVEELQKRnhkdSQFETDIVQRMEQETQRKLEQLRAELDE---MYGQQIVQMKQELIRQHmAQMEEMK 464
Cdd:pfam15921 288 SSARSQANSIQSQLEIIQEQ----ARNQNSMYMRQLSDLESTVSQLRSELREakrMYEDKIEELEKQLVLAN-SELTEAR 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 465 T------RHKGEMENALRSY-SNITVNEDQIKLMNvainELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEEL 537
Cdd:pfam15921 363 TerdqfsQESGNLDDQLQKLlADLHKREKELSLEK----EQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAM 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 538 SfSREQIQRARQTIAEQESklneaHKSLSTVEDLKAEIvsasESRKELELKHEAEVTNYKIKLEMLEKeknAVLDRMAES 617
Cdd:pfam15921 439 K-SECQGQMERQMAAIQGK-----NESLEKVSSLTAQL----ESTKEMLRKVVEELTAKKMTLESSER---TVSDLTASL 505
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 618 QEAElerlrtQLLFSHEEELSKLKEDLEIEhrinIEKLKdnlgiHYKQQIDGLQNemsqkietmqfekdnlitkqnqlil 697
Cdd:pfam15921 506 QEKE------RAIEATNAEITKLRSRVDLK----LQELQ-----HLKNEGDHLRN------------------------- 545
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 698 eisklkdlqqslVNSKSEEMTLQINELQKEIEILRQEEKEK----GTLEQEVQELQLKTELLEKQMKEKENDLQEKfaql 773
Cdd:pfam15921 546 ------------VQTECEALKLQMAEKDKVIEILRQQIENMtqlvGQHGRTAGAMQVEKAQLEKEINDRRLELQEF---- 609
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 774 eaenSILKDEKKTleDMLKIHTPVSQEErlifLDSIKSKSKDSvwekeieILIEENEDLKQQCIQLNEEIEKQRNTFSFA 853
Cdd:pfam15921 610 ----KILKDKKDA--KIRELEARVSDLE----LEKVKLVNAGS-------ERLRAVKDIKQERDQLLNEVKTSRNELNSL 672
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 854 EKNFEVNYQELQEEyacllkvKDDLEDSKNKQELEYKSKLKALNEELH-LQRINPTTVKMKSSVFDEDKTFVAETLEMG- 931
Cdd:pfam15921 673 SEDYEVLKRNFRNK-------SEEMETTTNKLKMQLKSAQSELEQTRNtLKSMEGSDGHAMKVAMGMQKQITAKRGQIDa 745
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 932 -----EVVEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEK-------EQVSLRCRELEI 999
Cdd:pfam15921 746 lqskiQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVanmevalDKASLQFAECQD 825
|
890
....*....|.
gi 22538393 1000 IINHNRAENVQ 1010
Cdd:pfam15921 826 IIQRQEQESVR 836
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
161-792 |
7.58e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 71.59 E-value: 7.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 161 ESELAGKQHEIEELNRELEEMR--VTYGTEGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKL 238
Cdd:TIGR04523 151 EKELEKLNNKYNDLKKQKEELEneLNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 239 QIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDKKVEN 318
Cdd:TIGR04523 231 KDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNK 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 319 SNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLM 398
Cdd:TIGR04523 311 ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 399 GTVEELQKrnhkdsqfETDIVQRMEQETQRKLEQLRAELDEMyGQQIVQMKQELIRQH--MAQMEEMKTRHKGEMENALR 476
Cdd:TIGR04523 391 SQINDLES--------KIQNQEKLNQQKDEQIKKLQQEKELL-EKEIERLKETIIKNNseIKDLTNQDSVKELIIKNLDN 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 477 SysnITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQES 556
Cdd:TIGR04523 462 T---RESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKES 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 557 KLNeahkslstveDLKAEIVSASESRKELELKHEAEVTNYKIKLEMLEKE----KNAVLDRMAESQEAELERLRTQLLfS 632
Cdd:TIGR04523 539 KIS----------DLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKslkkKQEEKQELIDQKEKEKKDLIKEIE-E 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 633 HEEELSKLKEDLEIEHRINiEKLKDNlgihyKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLqqslvns 712
Cdd:TIGR04523 608 KEKKISSLEKELEKAKKEN-EKLSSI-----IKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTK------- 674
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 713 kseemtlqineLQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKqmkekendLQEKFAQLEAENSILKDEKKTLEDMLK 792
Cdd:TIGR04523 675 -----------IDDIIELMKDWLKELSLHYKKYITRMIRIKDLPK--------LEEKYKEIEKELKKLDEFSKELENIIK 735
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1849-2411 |
9.40e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 9.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1849 RLQAAVEKLLEAISETSSQLEHAKVTQTELMRESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVIDGYA 1928
Cdd:COG1196 257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1929 DEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQL--LQETEKLMKEKL 2006
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLeeLEEAEEALLERL 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2007 EVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDE--QAIDREHERDVFQ 2084
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEllEELAEAAARLLLL 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2085 QEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLK-----EKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRV--RELE 2157
Cdd:COG1196 497 LEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGveaayEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKagRATF 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2158 QALLVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREE--LENKNEEVQQLHMQLEIQKKESTTR 2235
Cdd:COG1196 577 LPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAarLEAALRRAVTLAGRLREVTLEGEGG 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2236 LQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNEL 2315
Cdd:COG1196 657 SAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE 736
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2316 IRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGqKTSMNA----HSLSEEADSLKHQLDVVIAEKLALE 2391
Cdd:COG1196 737 LLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALG-PVNLLAieeyEELEERYDFLSEQREDLEEARETLE 815
|
570 580
....*....|....*....|
gi 22538393 2392 QQVETANEEmtfMKNVLKET 2411
Cdd:COG1196 816 EAIEEIDRE---TRERFLET 832
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1996-2743 |
1.16e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 1.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1996 QETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEeQVSRFIEL-EQEKNTELMDLRQQNQALEKQLEKmrkfLDEQAI 2074
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLERQAE-KAERYKELkAELRELELALLVLRLEELREELEE----LQEELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2075 DREHERDVFQQEIQKLEQQLKVVprfqpisEHQTREVEQLANH----LKEKTDKCSELLLSKEQLQRDIQERNEEIEKLE 2150
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEEL-------RLEVSELEEEIEElqkeLYALANEISRLEQQKQILRERLANLERQLEELE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2151 FRVRELEQALLvEDRKHFGAVEAKPElSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKK 2230
Cdd:TIGR02168 323 AQLEELESKLD-ELAEELAELEEKLE-ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2231 EST---TRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQLKITTDNk 2307
Cdd:TIGR02168 401 EIErleARLERLEDRRERLQQEIEELLKKLEEAELKELQAE----------LEELEEELEELQEELERLEEALEELREE- 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2308 vIEEKNELIRDLETQIECLmsdqecvkRNREEEIEQLNEVIEKLQQELANIgqktSMNAHSLSEEADSLKHQLDVVIAEK 2387
Cdd:TIGR02168 470 -LEEAEQALDAAERELAQL--------QARLDSLERLQENLEGFSEGVKAL----LKNQSGLSGILGVLSELISVDEGYE 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2388 LALE-------QQVETANEEmTFMKNV--LKETNF-------------------KMNQLTQE---LFSLKRERESVEKIQ 2436
Cdd:TIGR02168 537 AAIEaalggrlQAVVVENLN-AAKKAIafLKQNELgrvtflpldsikgteiqgnDREILKNIegfLGVAKDLVKFDPKLR 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2437 ---------SIPENSVNVAIDHLSKDKPELEVVLTEDALKSLENQTYFKSFEENG-----KGSIINLETRLLQLESTVSA 2502
Cdd:TIGR02168 616 kalsyllggVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSsilerRREIEELEEKIEELEEKIAE 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2503 KDLELTQCYKQIKDMQEQG---QFETEMLQKKIVNLQKIVE------EKVAAALVS-QIQLEAVQEYAKFCQDNQTISSE 2572
Cdd:TIGR02168 696 LEKALAELRKELEELEEELeqlRKELEELSRQISALRKDLArleaevEQLEERIAQlSKELTELEAEIEELEERLEEAEE 775
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2573 PERTNIQNLNQLRE--DELGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEKKLLELQKLLEGNEKKQR 2650
Cdd:TIGR02168 776 ELAEAEAEIEELEAqiEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2651 EKEKKrspqdVEVLKTTTELFHSneesgffnELEALRAESVATKAELASYKEKAEKLQEELLVKETNMTSLQKDLSQVRD 2730
Cdd:TIGR02168 856 SLAAE-----IEELEELIEELES--------ELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE 922
|
810
....*....|...
gi 22538393 2731 HLAEAKEKLSILE 2743
Cdd:TIGR02168 923 KLAQLELRLEGLE 935
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
195-988 |
1.38e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 71.16 E-value: 1.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 195 EFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQLQASETLrnsthsSTAADLLQAKQQILTHQ 274
Cdd:pfam02463 159 EEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQL------KEKLELEEEYLLYLDYL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 275 QQLEEQDHLLEDYQKKKEDFTMQISFLQEKikvyEMEQDKKVENSNKEEIQEKETIIEELN--TKIIEEEKKTLELKDKL 352
Cdd:pfam02463 233 KLNEERIDLLQELLRDEQEEIESSKQEIEK----EEEKLAQVLKENKEEEKEKKLQEEELKllAKEEEELKSELLKLERR 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 353 TTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNHKDSQfETDIVQRMEQETQRKLEQ 432
Cdd:pfam02463 309 KVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLE-QLEEELLAKKKLESERLS 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 433 LRAELDEMYGQQIVQMKQEliRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEKL 512
Cdd:pfam02463 388 SAAKLKEEELELKSEEEKE--AQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDEL 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 513 KEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAE 592
Cdd:pfam02463 466 ELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAI 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 593 VTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEE----LSKLKEDLEIEHRINIEKLKDNLGIHYKQQID 668
Cdd:pfam02463 546 STAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLplksIAVLEIDPILNLAQLDKATLEADEDDKRAKVV 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 669 GLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQEL 748
Cdd:pfam02463 626 EGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 749 QLKTELLEKQMKEKENDLQEKFaQLEAENSILKDEKKTLEDMLKihtpvSQEERLIFLDSIKSKSKDSVWEKEIEILIEE 828
Cdd:pfam02463 706 QREKEELKKLKLEAEELLADRV-QEAQDKINEELKLLKQKIDEE-----EEEEEKSRLKKEEKEEEKSELSLKEKELAEE 779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 829 NEDLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEyacllKVKDDLEDSKNKQELEYKSKLKALNEELHLQRINPT 908
Cdd:pfam02463 780 REKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLE-----EEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEE 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 909 TVKMKSSVFDEDKTFVAETLEMGEVVEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKE 988
Cdd:pfam02463 855 ELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYE 934
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
321-884 |
2.87e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 2.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 321 KEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGT 400
Cdd:COG1196 245 EAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 401 VEELQKRNHKDSQfETDIVQRMEQETQRKLEQLRAELDEmygqqivqmKQELIRQHMAQMEEMKTRHKGEMENALRSYSN 480
Cdd:COG1196 325 LAELEEELEELEE-ELEELEEELEEAEEELEEAEAELAE---------AEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 481 ITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNE 560
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 561 AHKSLSTVEDLKAEIVSASESRKELELKHEAEVTNYKIKLEMLEKEKNA--------VLDRMAESQEAELERLRTQLLFS 632
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAgavavligVEAAYEAALEAALAAALQNIVVE 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 633 HEEELSKLKEDLEIE----------HRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKL 702
Cdd:COG1196 555 DDEVAAAAIEYLKAAkagratflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEA 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 703 KDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKD 782
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 783 EKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENED-LKQQCIQLNEEIEkqrntfsfaekNFE-VN 860
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEeLERELERLEREIE-----------ALGpVN 783
|
570 580 590
....*....|....*....|....*....|
gi 22538393 861 ------YQELQEEYACLLKVKDDLEDSKNK 884
Cdd:COG1196 784 llaieeYEELEERYDFLSEQREDLEEARET 813
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
309-792 |
1.15e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 67.74 E-value: 1.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 309 EMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKEr 388
Cdd:TIGR04523 132 QKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKI- 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 389 qssEEIKQLMGTVEELQKRNhkdSQFETDIvqrmeQETQRKLEQLRAELDEMYgQQIVQMKQElirqhmaqmeemKTRHK 468
Cdd:TIGR04523 211 ---QKNKSLESQISELKKQN---NQLKDNI-----EKKQQEINEKTTEISNTQ-TQLNQLKDE------------QNKIK 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 469 GEMENalrSYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEK-LKEELGLILEEKcalQRQLEDLVEELSFSREQIQRA 547
Cdd:TIGR04523 267 KQLSE---KQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQdWNKELKSELKNQ---EKKLEEIQNQISQNNKIISQL 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 548 RQTIAEQESKLNEahkslSTVEDlkaeivsaSESRKELELKHeaevtnykIKLEMLEKEKNAVLDRMaESQEAELERLRT 627
Cdd:TIGR04523 341 NEQISQLKKELTN-----SESEN--------SEKQRELEEKQ--------NEIEKLKKENQSYKQEI-KNLESQINDLES 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 628 QllFSHEEELSKLKEdleiehrINIEKLKDNlgihyKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQ 707
Cdd:TIGR04523 399 K--IQNQEKLNQQKD-------EQIKKLQQE-----KELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRE 464
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 708 SLvNSKSEEMTLQINELQKEIEILRQE----EKEKGTLEQEVQELQLKTELLEKQ---MKEKENDLQEKFAQLEAENSIL 780
Cdd:TIGR04523 465 SL-ETQLKVLSRSINKIKQNLEQKQKElkskEKELKKLNEEKKELEEKVKDLTKKissLKEKIEKLESEKKEKESKISDL 543
|
490
....*....|..
gi 22538393 781 KDEKKTLEDMLK 792
Cdd:TIGR04523 544 EDELNKDDFELK 555
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
166-565 |
4.16e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 4.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 166 GKQHEIEELNRELEEMrvtygtegLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQL 245
Cdd:TIGR02168 674 ERRREIEELEEKIEEL--------EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 246 QAsetlrnsTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDftmqisfLQEKIkvyemEQDKKVENSNKEEIQ 325
Cdd:TIGR02168 746 EE-------RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE-------LEAQI-----EQLKEELKALREALD 806
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 326 EKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQL----MGTV 401
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALlnerASLE 886
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 402 EELQKRNHKDSQFETDIvQRMEQEtQRKLEQLRAELDEMYGQqiVQMKQELIRQHMAQMEEMKT-RHKGEMENALRSYSN 480
Cdd:TIGR02168 887 EALALLRSELEELSEEL-RELESK-RSELRRELEELREKLAQ--LELRLEGLEVRIDNLQERLSeEYSLTLEEAEALENK 962
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 481 ITVN----EDQIKLMNVAINEL-NIKLqDTNSQKEKLKEELGLILEEKCALQR---QLEDLVEELsfSREQIQRARQTIA 552
Cdd:TIGR02168 963 IEDDeeeaRRRLKRLENKIKELgPVNL-AAIEEYEELKERYDFLTAQKEDLTEakeTLEEAIEEI--DREARERFKDTFD 1039
|
410
....*....|...
gi 22538393 553 EQESKLNEAHKSL 565
Cdd:TIGR02168 1040 QVNENFQRVFPKL 1052
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1614-2422 |
5.01e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 5.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1614 RQMERQREDQEQLQEEIKRLNRQLaqrSSIDNENLVSERERVLLEELEALKQLSLAGR-EKLCCELRNSSTQTqngNENQ 1692
Cdd:TIGR02168 179 RKLERTRENLDRLEDILNELERQL---KSLERQAEKAERYKELKAELRELELALLVLRlEELREELEELQEEL---KEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1693 GEVEEqtfKEKELDRKPEDVppEILSNERYALQKANNRLLKILLEVVKTTAAVEETIGRHVlgiLDRSSKSQSSASLIWR 1772
Cdd:TIGR02168 253 EELEE---LTAELQELEEKL--EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILR---ERLANLERQLEELEAQ 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1773 SEAEASVKSCVHEEHTRVTDEsipsysgSDMPRNDINMWSKVTEEGTELSQRLVRsgfagTEIDPENEelmlniSSRLQA 1852
Cdd:TIGR02168 325 LEELESKLDELAEELAELEEK-------LEELKEELESLEAELEELEAELEELES-----RLEELEEQ------LETLRS 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1853 AVEKLLEAISETSSQLEHAKVTQTELMRESFRQKQEATESLKcqEELRERLHEESRAREQLAVELSKAEGVIDGYADEKT 1932
Cdd:TIGR02168 387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK--KLEEAELKELQAELEELEEELEELQEELERLEEALE 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1933 LFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAG--PVEQQLLQETEKLMKEkLEVQC 2010
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGilGVLSELISVDEGYEAA-IEAAL 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2011 QAEK---VRDDLQKQVKALEIDVEEQVSR--FIELEQEKNTELmdlrqqNQALEKQLEKMRKFLDeQAIDREHERDVFQQ 2085
Cdd:TIGR02168 544 GGRLqavVVENLNAAKKAIAFLKQNELGRvtFLPLDSIKGTEI------QGNDREILKNIEGFLG-VAKDLVKFDPKLRK 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2086 EIQKLEQQLKVVPRFQPISE--HQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLvE 2163
Cdd:TIGR02168 617 ALSYLLGGVLVVDDLDNALElaKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIA-E 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2164 DRKHFGAVEAKPElSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQEN 2243
Cdd:TIGR02168 696 LEKALAELRKELE-ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2244 KLFKDDMEKLGLAIKESDAMSTQdqhvlFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNkvIEEKNELIRDLETQI 2323
Cdd:TIGR02168 775 EELAEAEAEIEELEAQIEQLKEE-----LKALREALDELRAELTLLNEEAANLRERLESLERR--IAATERRLEDLEEQI 847
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2324 ECLMSDQECVKRNREEEIEQLNEVIEKLQQELaNIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTF 2403
Cdd:TIGR02168 848 EELSEDIESLAAEIEELEELIEELESELEALL-NERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQ 926
|
810
....*....|....*....
gi 22538393 2404 MKNVLKETNFKMNQLTQEL 2422
Cdd:TIGR02168 927 LELRLEGLEVRIDNLQERL 945
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
260-645 |
8.66e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 8.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 260 AADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDKKVE--NSNKEEIQEKETIIEELNTK 337
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEEriAQLSKELTELEAEIEELEER 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 338 IIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNhkdsqfeTD 417
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL-------ED 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 418 IVQRMEQETQRkLEQLRAELDEMygqqivqmkQELIRQHmaqmeemktrhkgemenalrsysnitvnEDQIKLMNVAINE 497
Cdd:TIGR02168 843 LEEQIEELSED-IESLAAEIEEL---------EELIEEL----------------------------ESELEALLNERAS 884
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 498 LNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKslstvedLKAEIVs 577
Cdd:TIGR02168 885 LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS-------LTLEEA- 956
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22538393 578 asesrKELELKHEAEVTNYKIKLEMLEKEKNAV----LDRMAESQEAElERLRTqlLFSHEEELSKLKEDLE 645
Cdd:TIGR02168 957 -----EALENKIEDDEEEARRRLKRLENKIKELgpvnLAAIEEYEELK-ERYDF--LTAQKEDLTEAKETLE 1020
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
495-1000 |
1.09e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 64.70 E-value: 1.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 495 INELNIKLQDTNSQKEKL---KEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDL 571
Cdd:PRK03918 209 INEISSELPELREELEKLekeVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKEL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 572 KAEIVSASESRKELElKHEAEVTNYKIKLEMLEKEKNAVLDRM--AESQEAELERLRtQLLFSHEEELSKLKEDLEIEHR 649
Cdd:PRK03918 289 KEKAEEYIKLSEFYE-EYLDELREIEKRLSRLEEEINGIEERIkeLEEKEERLEELK-KKLKELEKRLEELEERHELYEE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 650 I-----NIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTL--QIN 722
Cdd:PRK03918 367 AkakkeELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCgrELT 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 723 ELQKEiEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLqEKFAQLEAENSILkDEKKTLEDMLKIHTPVSQEER 802
Cdd:PRK03918 447 EEHRK-ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVL-KKESELIKLKELA-EQLKELEEKLKKYNLEELEKK 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 803 LIFLDSIKSKSkdsvwekeieilieenEDLKQQCIQLNEEIEKQrNTFSFAEKNFEVNYQELQEEYACLLK------VKD 876
Cdd:PRK03918 524 AEEYEKLKEKL----------------IKLKGEIKSLKKELEKL-EELKKKLAELEKKLDELEEELAELLKeleelgFES 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 877 DLEDSKNKQELE--YKSKLKALNEELHLQRINPTTVKMKSSVfDEDKTFVAETLEMGEVVEKDTTELM-----EKLEVTK 949
Cdd:PRK03918 587 VEELEERLKELEpfYNEYLELKDAEKELEREEKELKKLEEEL-DKAFEELAETEKRLEELRKELEELEkkyseEEYEELR 665
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 22538393 950 REKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRELEII 1000
Cdd:PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKL 716
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
230-789 |
1.69e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 1.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 230 ELTEQSQKLQIQ------FQQLQASETLRnsthsstaaDLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQE 303
Cdd:COG1196 197 ELERQLEPLERQaekaerYRELKEELKEL---------EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 304 KIKVYEMEQDKKvensnKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNS 383
Cdd:COG1196 268 ELEELRLELEEL-----ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 384 KQKERQSSEEIKQLMGTVEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEmygqqivqmkqeliRQHMAQMEEM 463
Cdd:COG1196 343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL--------------AAQLEELEEA 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 464 KTRHKGEMENAlrsysnitvnEDQIKLMNVAINELNIKLQDTNSQKEKLKEELglilEEKCALQRQLEDLVEELSFSREQ 543
Cdd:COG1196 409 EEALLERLERL----------EEELEELEEALAELEEEEEEEEEALEEAAEEE----AELEEEEEALLELLAELLEEAAL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 544 IQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKEL----------------ELKHEAEVTNYKIKLEM----- 602
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLaglrglagavavligvEAAYEAALEAALAAALQnivve 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 603 ----------LEKEKNA------VLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRI-------NIEKLKDNL 659
Cdd:COG1196 555 ddevaaaaieYLKAAKAgratflPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLgdtllgrTLVAARLEA 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 660 GIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKG 739
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 22538393 740 TLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLED 789
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE 764
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2133-2437 |
2.65e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 2.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2133 EQLQRDIQERNEEIEKLEFRVRELE--QALLVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREE 2210
Cdd:TIGR02169 187 ERLDLIIDEKRQQLERLRREREKAEryQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2211 LENKNEEVQQLHMQLEIQKKES----TTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQhVLFGKFAQIIQEKEVEI 2286
Cdd:TIGR02169 267 LEEIEQLLEELNKKIKDLGEEEqlrvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE-AEIDKLLAEIEELEREI 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2287 DQLNEQVTKLQQQLKittdnKVIEEKNELIRDLETQIECLMSDQECVKrNREEEIEQLNEVIEKLQQELANIGQKtsmnA 2366
Cdd:TIGR02169 346 EEERKRRDKLTEEYA-----ELKEELEDLRAELEEVDKEFAETRDELK-DYREKLEKLKREINELKRELDRLQEE----L 415
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22538393 2367 HSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEKIQS 2437
Cdd:TIGR02169 416 QRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELS 486
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2030-2394 |
3.44e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 3.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2030 VEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLkvvprfqpisehqtr 2109
Cdd:TIGR02169 182 VEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQL--------------- 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2110 eveqlanhlkektdkcSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVEDRKHFGAVEAKPElSLEVQLQAERDA 2189
Cdd:TIGR02169 247 ----------------ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIG-ELEAEIASLERS 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2190 IDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKES---TTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQ 2266
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRdklTEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2267 DQHVLfGKFAQIIQEKEVEIDQLNEQVTKLQQQL-KITTDNKVIEEK-NELIRDLETQIECLmsdqecvkRNREEEIEQL 2344
Cdd:TIGR02169 390 YREKL-EKLKREINELKRELDRLQEELQRLSEELaDLNAAIAGIEAKiNELEEEKEDKALEI--------KKQEWKLEQL 460
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 22538393 2345 NEVIEKLQQELANIGQKTSmnahSLSEEADSLKHQLDVVIAEKLALEQQV 2394
Cdd:TIGR02169 461 AADLSKYEQELYDLKEEYD----RVEKELSKLQRELAEAEAQARASEERV 506
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2004-2301 |
4.86e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 4.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2004 EKLEVQC-QAEKVR------DDLQKQVKALEID-VEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAID 2075
Cdd:COG1196 203 EPLERQAeKAERYRelkeelKELEAELLLLKLReLEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2076 REHERDVFQQEIQKLEQQLKvvpRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQR---DIQERNEEIEKLEFR 2152
Cdd:COG1196 283 LEEAQAEEYELLAELARLEQ---DIARLEERRRELEERLEELEEELAELEEELEELEEELEEleeELEEAEEELEEAEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2153 VRELEQALLVEDRKHFGAVEAkpELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQL-EIQKKE 2231
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEE--LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALaELEEEE 437
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2232 STTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHvlfgkfAQIIQEKEVEIDQLNEQVTKLQQQLK 2301
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL------EAALAELLEELAEAAARLLLLLEAEA 501
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
3058-3357 |
5.91e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 5.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3058 QRIQEQGVEYQAAMECLQKADRRSLLSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQMLEMQVELSSMKD 3137
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3138 RATELQEQLSSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSREL----- 3212
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAeaela 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3213 -QWALEKEKAKLGRSEERDKEELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGRNLELQ 3291
Cdd:COG1196 376 eAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22538393 3292 VLLESEKVRIREMSSTLDRERELHAQLQSSDGTGQSRpplpsEDLLKELQKQLEEKHSRIVELLNE 3357
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAAR-----LLLLLEAEADYEGFLEGVKAALLL 516
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
170-884 |
6.27e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.47 E-value: 6.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 170 EIEELNRELEEMRVTYGTEGLQQLQEFEAAiKQRDGIITQLTANLQQARR----EKDETMREFLELTEQSQKLQIQFQQL 245
Cdd:PTZ00121 1231 KAEEAKKDAEEAKKAEEERNNEEIRKFEEA-RMAHFARRQAAIKAEEARKadelKKAEEKKKADEAKKAEEKKKADEAKK 1309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 246 QASETLRNSTHSSTAAdllQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEM--EQDKKVENSNKEE 323
Cdd:PTZ00121 1310 KAEEAKKADEAKKKAE---EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKkkEEAKKKADAAKKK 1386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 324 IQEKETIiEELNTKIIEEEKKTLELKdKLTTADKLLGELQEQI--VQKNQEIKNMKLELTNSKQKERQSSEEIK--QLMG 399
Cdd:PTZ00121 1387 AEEKKKA-DEAKKKAEEDKKKADELK-KAAAAKKKADEAKKKAeeKKKADEAKKKAEEAKKADEAKKKAEEAKKaeEAKK 1464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 400 TVEELQKRNHKDSQFETdivQRMEQETQRKLEQLRAELDEMYGQQIVQMKQELIRQhmaqMEEMKTRHKGEMENALRSYS 479
Cdd:PTZ00121 1465 KAEEAKKADEAKKKAEE---AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK----AEEAKKADEAKKAEEAKKAD 1537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 480 NITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEElglilEEKCALQRQLEDLveelsfsrEQIQRARqtiAEQESKLN 559
Cdd:PTZ00121 1538 EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE-----EDKNMALRKAEEA--------KKAEEAR---IEEVMKLY 1601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 560 EAHKSLSTVEDLKAE--IVSASESRKELELKHEAEVTNYKI-----KLEMLEKEKNAVLDRMAE-SQEAELERLRTQLLF 631
Cdd:PTZ00121 1602 EEEKKMKAEEAKKAEeaKIKAEELKKAEEEKKKVEQLKKKEaeekkKAEELKKAEEENKIKAAEeAKKAEEDKKKAEEAK 1681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 632 SHEEELSKLKEDL--EIEHRINIEKLKDNLGIHYK--QQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQ 707
Cdd:PTZ00121 1682 KAEEDEKKAAEALkkEAEEAKKAEELKKKEAEEKKkaEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 708 --SLVNSKSEEMTLQINELQKEiEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKE---NDLQEKFAQLEAENSILKD 782
Cdd:PTZ00121 1762 lkKEEEKKAEEIRKEKEAVIEE-ELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNlviNDSKEMEDSAIKEVADSKN 1840
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 783 EKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCiqlNEEIEKQRNTFSFAEKNFEVNYQ 862
Cdd:PTZ00121 1841 MQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKID---KDDIEREIPNNNMAGKNNDIIDD 1917
|
730 740
....*....|....*....|...
gi 22538393 863 EL-QEEYacllkVKDDLEDSKNK 884
Cdd:PTZ00121 1918 KLdKDEY-----IKRDAEETREE 1935
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1909-2435 |
7.11e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 7.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1909 AREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEag 1988
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE-- 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1989 pveqqlLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKF 2068
Cdd:COG1196 346 ------LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2069 LDEQAIDREHERDVFQQEIQKLEQQLKvvprfqpisehQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEK 2148
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEE-----------AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2149 LEFRVRELEQALLVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQ 2228
Cdd:COG1196 489 AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKA 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2229 KKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQ-------LNEQVTKLQQQLK 2301
Cdd:COG1196 569 AKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVaarleaaLRRAVTLAGRLRE 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2302 ITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLD 2381
Cdd:COG1196 649 VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEE 728
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 22538393 2382 VVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEKI 2435
Cdd:COG1196 729 QLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPV 782
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
425-775 |
7.33e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 7.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 425 ETQRKLEQLRAELDEMYGQ-QIVQMKQELIRQHMAQMEemKTRHKGEMENALRSysnitvnedqiKLMNVAINELNIKLQ 503
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENiERLDLIIDEKRQQLERLR--REREKAERYQALLK-----------EKREYEGYELLKEKE 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 504 DTNSQKEKLKEELGLILEEKCALQRQLEDLVEELsfsrEQIQRARQTIAEQESKL--NEAHKSLSTVEDLKAEIVSA--S 579
Cdd:TIGR02169 234 ALERQKEAIERQLASLEEELEKLTEEISELEKRL----EEIEQLLEELNKKIKDLgeEEQLRVKEKIGELEAEIASLerS 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 580 ESRKELELKH-EAEVTNYKIKLEMLEKEKNAvLDRMAESQEAELERLRTQLLfSHEEELSKLK---EDLEIEHRINIEKL 655
Cdd:TIGR02169 310 IAEKERELEDaEERLAKLEAEIDKLLAEIEE-LEREIEEERKRRDKLTEEYA-ELKEELEDLRaelEEVDKEFAETRDEL 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 656 KDnlgihYKQQIDGLQNEMsqkiETMQFEKDNLITKQNQLILEIS----KLKDLQQSLVNSKSEEMTLQInELQKEIEIL 731
Cdd:TIGR02169 388 KD-----YREKLEKLKREI----NELKRELDRLQEELQRLSEELAdlnaAIAGIEAKINELEEEKEDKAL-EIKKQEWKL 457
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 22538393 732 RQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEA 775
Cdd:TIGR02169 458 EQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
151-810 |
1.23e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 61.52 E-value: 1.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 151 QDSPTHLEMMESELAGKQHEIEELNRELEEMRVTYgtEGLQQLQEFEAAIKQRDGIITQLTANLQQAR---------REK 221
Cdd:TIGR00618 208 LCTPCMPDTYHERKQVLEKELKHLREALQQTQQSH--AYLTQKREAQEEQLKKQQLLKQLRARIEELRaqeavleetQER 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 222 DETMREFLELTEQS-------QKLQIQFQQLQASETLRNSTHSSTAAdlLQAKQQILTHQQQLEEQDHLLEDYQKKKEDf 294
Cdd:TIGR00618 286 INRARKAAPLAAHIkavtqieQQAQRIHTELQSKMRSRAKLLMKRAA--HVKQQSSIEEQRRLLQTLHSQEIHIRDAHE- 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 295 tMQISFLQEKIKVYEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTL-------ELKDKLTTADKLLGELQEQIV 367
Cdd:TIGR00618 363 -VATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDtrtsafrDLQGQLAHAKKQQELQQRYAE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 368 QKNQEIKNMKLELTNSK---QKERQSSEEIKQLMGTVEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEMY--- 441
Cdd:TIGR00618 442 LCAAAITCTAQCEKLEKihlQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQdid 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 442 --GQQIVQMKQELIRQHMAQMEEMKTRHKGEME-NALRSYSN-ITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELG 517
Cdd:TIGR00618 522 npGPLTRRMQRGEQTYAQLETSEEDVYHQLTSErKQRASLKEqMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTE 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 518 LILEEK----CALQRQLEDLVEELSfsrEQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEV 593
Cdd:TIGR00618 602 KLSEAEdmlaCEQHALLRKLQPEQD---LQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASR 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 594 TNYKIKLEMLEKEKNAVLDRMAESQEAelerlrTQLLFSHEEELSKLKEDLEIEHRINIEKLKDNLGIHyKQQIDGLQNE 673
Cdd:TIGR00618 679 QLALQKMQSEKEQLTYWKEMLAQCQTL------LRELETHIEEYDREFNEIENASSSLGSDLAAREDAL-NQSLKELMHQ 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 674 MSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTE 753
Cdd:TIGR00618 752 ARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEE 831
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 22538393 754 LLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLKIHTpvsQEERLIFLDSIK 810
Cdd:TIGR00618 832 QFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQ---LSDKLNGINQIK 885
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
267-1075 |
1.80e-08 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 61.22 E-value: 1.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 267 KQQILTHQQQLEEQDHLLEDYQKKKEDFtmqISFLQEKIKVYEMEQDKKVENSNKEEIQEK-ETIIEELNTK--IIEEEK 343
Cdd:TIGR01612 1117 KDDIKNLDQKIDHHIKALEEIKKKSENY---IDEIKAQINDLEDVADKAISNDDPEEIEKKiENIVTKIDKKknIYDEIK 1193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 344 KTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKerQSSEEIKQLMGTVEELQKRNHKDSQFETDIvqRME 423
Cdd:TIGR01612 1194 KLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKK--KSEHMIKAMEAYIEDLDEIKEKSPEIENEM--GIE 1269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 424 QETQRKLEQLRAELDEMYGQQIVQMKQEL----IRQHMAQMEEMKTRHK--GEMENALRSY--SNITVNEDQIKLMNVAI 495
Cdd:TIGR01612 1270 MDIKAEMETFNISHDDDKDHHIISKKHDEnisdIREKSLKIIEDFSEESdiNDIKKELQKNllDAQKHNSDINLYLNEIA 1349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 496 NELNI-KLQDTNSQKEKLKEELGLILEEKcalqrqlEDLVEELSFSREQIQRARQTIAEQESKlneaHKSLSTVE--DLK 572
Cdd:TIGR01612 1350 NIYNIlKLNKIKKIIDEVKEYTKEIEENN-------KNIKDELDKSEKLIKKIKDDINLEECK----SKIESTLDdkDID 1418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 573 AEIVSASESRKELeLKHEAEVTNYKIKLEmlEKEKNAVLD----RMAESQEAELERLRTQLLFS-HEEELSKLKEDLEIE 647
Cdd:TIGR01612 1419 ECIKKIKELKNHI-LSEESNIDTYFKNAD--ENNENVLLLfkniEMADNKSQHILKIKKDNATNdHDFNINELKEHIDKS 1495
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 648 HRINIEKLKDNLGI--------HYKQQIDGLQNEMSQKIETMQFEKDNliTKQNQLILEISKLKDlQQSLVNSKSEEmtl 719
Cdd:TIGR01612 1496 KGCKDEADKNAKAIeknkelfeQYKKDVTELLNKYSALAIKNKFAKTK--KDSEIIIKEIKDAHK-KFILEAEKSEQ--- 1569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 720 QINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQM------KEKENDLQEKFAQLEAENSILKDEKKTLEDMLKI 793
Cdd:TIGR01612 1570 KIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLENFENKFlkisdiKKKINDCLKETESIEKKISSFSIDSQDTELKENG 1649
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 794 HTPVSQEErliFLDSIKSKSKDsvwekeieilieeNEDLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEYAcllk 873
Cdd:TIGR01612 1650 DNLNSLQE---FLESLKDQKKN-------------IEDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIA---- 1709
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 874 vkddledSKNKQELEYKSKLkalneelhlqrINPTTVKMKSSVFDEDktfvAETLEMGEVVEKDTTELMEKLEvtkrEKL 953
Cdd:TIGR01612 1710 -------IANKEEIESIKEL-----------IEPTIENLISSFNTND----LEGIDPNEKLEEYNTEIGDIYE----EFI 1763
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 954 ELSQRLSDLSEQLKQ--------KHGEISFLNEEVKSLKQEKEQVS----LRCRELEIIINHnraenvqscdtqVSSLLD 1021
Cdd:TIGR01612 1764 ELYNIIAGCLETVSKepitydeiKNTRINAQNEFLKIIEIEKKSKSylddIEAKEFDRIINH------------FKKKLD 1831
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*
gi 22538393 1022 GV-VTMTSRgaegsVSKVNKSFGEESKimvedkvSFENMtvgEESKQEQLILDHL 1075
Cdd:TIGR01612 1832 HVnDKFTKE-----YSKINEGFDDISK-------SIENV---KNSTDENLLFDIL 1871
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1850-2433 |
2.39e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 2.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1850 LQAAVEKLLEAISETSSQLEHAkvtqtelmRESFRQKQEATESLKCQEELRERLHEESRAR-EQLAVELSKAEGVIDGYA 1928
Cdd:TIGR02168 286 LQKELYALANEISRLEQQKQIL--------RERLANLERQLEELEAQLEELESKLDELAEElAELEEKLEELKEELESLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1929 DEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMK-EKLE 2007
Cdd:TIGR02168 358 AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaELKE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2008 VQCQAEKVRDDLQKQVKALEiDVEEQVSRFIELEQEKNTELMDLRQQNQ-------ALEKQLEKMRKFlDEQAIDREHER 2080
Cdd:TIGR02168 438 LQAELEELEEELEELQEELE-RLEEALEELREELEEAEQALDAAERELAqlqarldSLERLQENLEGF-SEGVKALLKNQ 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2081 DVFQQEIQKLEQQLKVVPRFQ----------------PISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNE 2144
Cdd:TIGR02168 516 SGLSGILGVLSELISVDEGYEaaieaalggrlqavvvENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILK 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2145 EIEK-----------------------------------LEFRVRELEQALLV----------------EDRKHFGAVEA 2173
Cdd:TIGR02168 596 NIEGflgvakdlvkfdpklrkalsyllggvlvvddldnaLELAKKLRPGYRIVtldgdlvrpggvitggSAKTNSSILER 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2174 KPELS-LEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKEsttrLQELEQENKLFKDDMEK 2252
Cdd:TIGR02168 676 RREIEeLEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD----LARLEAEVEQLEERIAQ 751
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2253 LGLAIKESDAMSTQDQHVLfGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTD-----NKVIEEKNELIRDLETQIECL- 2326
Cdd:TIGR02168 752 LSKELTELEAEIEELEERL-EEAEEELAEAEAEIEELEAQIEQLKEELKALREaldelRAELTLLNEEAANLRERLESLe 830
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2327 --MSDQECVKRNREEEIEQLNEVIEKLQQELAnigqktsmnahSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFM 2404
Cdd:TIGR02168 831 rrIAATERRLEDLEEQIEELSEDIESLAAEIE-----------ELEELIEELESELEALLNERASLEEALALLRSELEEL 899
|
650 660
....*....|....*....|....*....
gi 22538393 2405 KNVLKETNFKMNQLTQELFSLKRERESVE 2433
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLE 928
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
553-886 |
3.65e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 3.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 553 EQESKLNEAHKSLSTVEDLKAEIvsasesRKELE-LKHEAEVTN-YKIKLEMLEKEKNAVLDRMAESQEAELERLRTQL- 629
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILNEL------ERQLKsLERQAEKAErYKELKAELRELELALLVLRLEELREELEELQEELk 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 630 -----LFSHEEELSKLKEDLEiEHRINIEKLKDNLGIHYK--QQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEI--- 699
Cdd:TIGR02168 250 eaeeeLEELTAELQELEEKLE-ELRLEVSELEEEIEELQKelYALANEISRLEQQKQILRERLANLERQLEELEAQLeel 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 700 -SKLKDLQQSLvnsksEEMTLQINELQKEIEILRQEEKEKgtlEQEVQELQLKTELLEKQM---KEKENDLQEKFAQLEA 775
Cdd:TIGR02168 329 eSKLDELAEEL-----AELEEKLEELKEELESLEAELEEL---EAELEELESRLEELEEQLetlRSKVAQLELQIASLNN 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 776 ENSILKDEKKTLEDMLKIhtpvSQEERLIFLDSIKSKSKDSVwEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEK 855
Cdd:TIGR02168 401 EIERLEARLERLEDRRER----LQQEIEELLKKLEEAELKEL-QAELEELEEELEELQEELERLEEALEELREELEEAEQ 475
|
330 340 350
....*....|....*....|....*....|.
gi 22538393 856 NFEVNYQELQEEYACLLKVKDDLEDSKNKQE 886
Cdd:TIGR02168 476 ALDAAERELAQLQARLDSLERLQENLEGFSE 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1849-2221 |
7.78e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 7.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1849 RLQAAVEKLLEAISETSSQLEHAKVTQTELmRESFRQKQEATESLKCQeelrerlheESRAREQLAVelskaegvidgya 1928
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEEL-EEELEQLRKELEELSRQ---------ISALRKDLAR------------- 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1929 dektlFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEV 2008
Cdd:TIGR02168 738 -----LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2009 QCQAEKVRdDLQKQVKALEIDVEEQVSRFIELEQEKNtelmDLRQQNQALEKQLEKMRKFLDEQAIDREH---ERDVFQQ 2085
Cdd:TIGR02168 813 TLLNEEAA-NLRERLESLERRIAATERRLEDLEEQIE----ELSEDIESLAAEIEELEELIEELESELEAllnERASLEE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2086 EIQKLEQQLkvvprfqpisEHQTREVEQLANHLKEKTDKCSELLLSKEQLQrdiqernEEIEKLEFRVRELEQALLVEDR 2165
Cdd:TIGR02168 888 ALALLRSEL----------EELSEELRELESKRSELRRELEELREKLAQLE-------LRLEGLEVRIDNLQERLSEEYS 950
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22538393 2166 KHFGAVEAKPELSLEVQLQAERDaIDRKEKEITNL-------EEQLEQFREELENKNEEVQQL 2221
Cdd:TIGR02168 951 LTLEEAEALENKIEDDEEEARRR-LKRLENKIKELgpvnlaaIEEYEELKERYDFLTAQKEDL 1012
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2012-2264 |
7.89e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.85 E-value: 7.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2012 AEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKfLDEQAIDREHERDVFQQEIQKLE 2091
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA-LEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2092 QQLKvvprfqpisEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIqerneeieklefRVRELEQALLVEDRKHFGAV 2171
Cdd:COG4942 97 AELE---------AQKEELAELLRALYRLGRQPPLALLLSPEDFLDAV------------RRLQYLKYLAPARREQAEEL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2172 EAKPElslevQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDME 2251
Cdd:COG4942 156 RADLA-----ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
250
....*....|...
gi 22538393 2252 KLGLAIKESDAMS 2264
Cdd:COG4942 231 RLEAEAAAAAERT 243
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
157-660 |
9.25e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.54 E-value: 9.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 157 LEMMESELAGKQHEIEELNRELEEMRVTYGT------------EGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDET 224
Cdd:PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEKlekevkeleelkEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 225 MREFLELTEQSQKLQIQFQQLQASETLRNSTH------SSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQI 298
Cdd:PRK03918 275 IEELEEKVKELKELKEKAEEYIKLSEFYEEYLdelreiEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 299 SFLQEKIKVYEMEQDKKVensNKEEIQEKETI--IEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNM 376
Cdd:PRK03918 355 EELEERHELYEEAKAKKE---ELERLKKRLTGltPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 377 K----------LELTNSKQKE--RQSSEEIKQLMGTVEELQKRNHKDSQFETDIvqRMEQETQRKLEQLRAELDemygqQ 444
Cdd:PRK03918 432 KkakgkcpvcgRELTEEHRKEllEEYTAELKRIEKELKEIEEKERKLRKELREL--EKVLKKESELIKLKELAE-----Q 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 445 IVQMKQELIRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKlmnvainelniKLQDTNSQKEKLKEELGLILEEKC 524
Cdd:PRK03918 505 LKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE-----------KLEELKKKLAELEKKLDELEEELA 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 525 ALQRQLedlvEELSFsrEQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELElKHEAEVTNYKIKLEMLE 604
Cdd:PRK03918 574 ELLKEL----EELGF--ESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELD-KAFEELAETEKRLEELR 646
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 22538393 605 KEKNAVLDRMAESQEAELERLRTQL---LFSHEEELSKLKEDLEiEHRINIEKLKDNLG 660
Cdd:PRK03918 647 KELEELEKKYSEEEYEELREEYLELsreLAGLRAELEELEKRRE-EIKKTLEKLKEELE 704
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
337-1164 |
1.11e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 58.44 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 337 KIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNHKDSQFet 416
Cdd:pfam02463 156 LEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLK-- 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 417 dIVQRMEQETQRKLEQLRAELDEMygQQIVQMKQELIRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAIN 496
Cdd:pfam02463 234 -LNEERIDLLQELLRDEQEEIESS--KQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKV 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 497 ELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIV 576
Cdd:pfam02463 311 DDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAA 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 577 SASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEE----------ELSKLKEDLEI 646
Cdd:pfam02463 391 KLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEkeelekqelkLLKDELELKKS 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 647 EHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLI-----TKQNQLILEISKLKDLQQSLVNSKSEEMTLQI 721
Cdd:pfam02463 471 EDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLalikdGVGGRIISAHGRLGDLGVAVENYKVAISTAVI 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 722 NELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDE---------KKTLEDMLK 792
Cdd:pfam02463 551 VEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATleadeddkrAKVVEGILK 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 793 IHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNE------EIEKQRNTFSFAEKNFEVNYQELQE 866
Cdd:pfam02463 631 DTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQelqekaESELAKEEILRRQLEIKKKEQREKE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 867 EYACLLKVKDDLEDSKnKQELEYKSKLKALNEELHLQRINPTTVKMKSSVFDEDKTFVAETLEMGEVVEKDTTELMEKLE 946
Cdd:pfam02463 711 ELKKLKLEAEELLADR-VQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVE 789
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 947 VTKREKLeLSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRELEIIINHNRAENVQSCDTQVSSLLDGVVTM 1026
Cdd:pfam02463 790 EEKEEKL-KAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEEL 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1027 TSRGAEGSV----------SKVNKSFGEESKIMVEDKVSFENMTVGEESKQEQLILDHLPSVTKESSLRATQPSENDKLQ 1096
Cdd:pfam02463 869 LQELLLKEEeleeqklkdeLESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEK 948
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22538393 1097 KELNVLKSEQNDLRLQMEAQRICLSLVYSTHVDQVREymENEKDKALCSLKEELIFAQEEKIKELQKI 1164
Cdd:pfam02463 949 EKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEE--KEERYNKDELEKERLEEEKKKLIRAIIEE 1014
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
270-1365 |
1.71e-07 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 57.75 E-value: 1.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 270 ILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQE---KIKVYemeqdKKVENSNKEE----------IQEKETIIEELNT 336
Cdd:TIGR01612 498 ILMRMKDFKDIIDFMELYKPDEVPSKNIIGFDIDqniKAKLY-----KEIEAGLKESyelaknwkklIHEIKKELEEENE 572
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 337 KIIEEEK-------KTLELKDKLTTADKLLGELQEQ---IVQKNQEIK---NMKLELTN--------SKQKERQSSEEIK 395
Cdd:TIGR01612 573 DSIHLEKeikdlfdKYLEIDDEIIYINKLKLELKEKiknISDKNEYIKkaiDLKKIIENnnayidelAKISPYQVPEHLK 652
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 396 ---QLMGTVE-ELQK---------RNHKDSQFETDIVQRMEQETqrKLEQLRAELDEMYgQQIVQMKQELIRQHMAQME- 461
Cdd:TIGR01612 653 nkdKIYSTIKsELSKiyeddidalYNELSSIVKENAIDNTEDKA--KLDDLKSKIDKEY-DKIQNMETATVELHLSNIEn 729
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 462 ----------EMKTRHKGEMENALrsysNITVNEDQIKLmnvaiNELNIKLQDTNSQKEKLKEELGLILEEKCALQRQ-- 529
Cdd:TIGR01612 730 kknelldiivEIKKHIHGEINKDL----NKILEDFKNKE-----KELSNKINDYAKEKDELNKYKSKISEIKNHYNDQin 800
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 530 LEDLVEELsfSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEVTNYKIKL-EMLEKEKN 608
Cdd:TIGR01612 801 IDNIKDED--AKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFaELTNKIKA 878
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 609 AVLDRMAESQEAEL---ERLRTQLLFSHEEELSKLKEDLEIEHRINI-EKLKDNL-GIHYKQQIdgLQNEMSQKIETMQf 683
Cdd:TIGR01612 879 EISDDKLNDYEKKFndsKSLINEINKSIEEEYQNINTLKKVDEYIKIcENTKESIeKFHNKQNI--LKEILNKNIDTIK- 955
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 684 eKDNLITK------QNQLILEISKL----KDLQQSLVNSKSEEMTLQINELQKEI-----EILRQEEKEKgtlEQEVQEL 748
Cdd:TIGR01612 956 -ESNLIEKsykdkfDNTLIDKINELdkafKDASLNDYEAKNNELIKYFNDLKANLgknkeNMLYHQFDEK---EKATNDI 1031
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 749 QLKTELLEKQMKEKENDLQEKFAQL--EAENSILKD-EKKTLEDMLKIHTPVSQeerlifLDSIKSKSK----DSVWEKE 821
Cdd:TIGR01612 1032 EQKIEDANKNIPNIEIAIHTSIYNIidEIEKEIGKNiELLNKEILEEAEINITN------FNEIKEKLKhynfDDFGKEE 1105
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 822 IEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEYACLLKVKDDLEDSKNKQELEYKsklkalneelh 901
Cdd:TIGR01612 1106 NIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADKAISNDDPEEIEKK----------- 1174
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 902 LQRInPTTVKMKSSVFDEDKTFVAETLEmgevVEKDTTElmekLEVTKREKLELSQRLSDL-----SEQLKQKHGEISFL 976
Cdd:TIGR01612 1175 IENI-VTKIDKKKNIYDEIKKLLNEIAE----IEKDKTS----LEEVKGINLSYGKNLGKLflekiDEEKKKSEHMIKAM 1245
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 977 NEEVKSLKQEKEQVSLRCRELEIIINHNRAENVqscdTQVSSLLDGVVTMTSRGAEGSVS-------KVNKSFGEESKIM 1049
Cdd:TIGR01612 1246 EAYIEDLDEIKEKSPEIENEMGIEMDIKAEMET----FNISHDDDKDHHIISKKHDENISdirekslKIIEDFSEESDIN 1321
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1050 VEDKVSFENMTVGEESKQE--------------------QLILDHLPSVTKEssLRATQPSENDKLQKELNVLKSEQNDL 1109
Cdd:TIGR01612 1322 DIKKELQKNLLDAQKHNSDinlylneianiynilklnkiKKIIDEVKEYTKE--IEENNKNIKDELDKSEKLIKKIKDDI 1399
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1110 RLQMeaqriCLSLVYSTHVDQ-VREYMENEKDKALCSLKEE------------------LIFAQEE----------KIKE 1160
Cdd:TIGR01612 1400 NLEE-----CKSKIESTLDDKdIDECIKKIKELKNHILSEEsnidtyfknadennenvlLLFKNIEmadnksqhilKIKK 1474
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1161 LQKIHQLELQTMKTQETGDEGKPLHLLIGKLQKAVSEECSYFLQ---TLCSVLGEYYTPALKCEVnAEDKENSGDYISEN 1237
Cdd:TIGR01612 1475 DNATNDHDFNINELKEHIDKSKGCKDEADKNAKAIEKNKELFEQykkDVTELLNKYSALAIKNKF-AKTKKDSEIIIKEI 1553
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1238 ED----------------PELQDYRYEVQDFQENMHTLLNKVTEEYNKLLVLQTRLSKIWGQQTDGMKLEFGEENLPKEE 1301
Cdd:TIGR01612 1554 KDahkkfileaekseqkiKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLENFENKFLKISDIKKKINDCLKETESIEKKI 1633
|
1210 1220 1230 1240 1250 1260
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22538393 1302 TEFlSIHSQMTNLEDIDVNHKSKLSSLQDL--EKTKLEEQVQELESL---ISSLQQQLKETEQNYEAEI 1365
Cdd:TIGR01612 1634 SSF-SIDSQDTELKENGDNLNSLQEFLESLkdQKKNIEDKKKELDELdseIEKIEIDVDQHKKNYEIGI 1701
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1908-2401 |
3.00e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.85 E-value: 3.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1908 RAREQLAVeLSKAEGVIDGYADEKTLFERQIQEKTDI-IDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAE 1986
Cdd:COG4913 246 DAREQIEL-LEPIRELAERYAAARERLAELEYLRAALrLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1987 AGPVEQQL-------LQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALE 2059
Cdd:COG4913 325 LDELEAQIrgnggdrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2060 KQLEKmrkfLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQpiseHQTRevEQLANHLKEKTDKC---SELLlskeqlq 2136
Cdd:COG4913 405 EALAE----AEAALRDLRRELRELEAEIASLERRKSNIPARL----LALR--DALAEALGLDEAELpfvGELI------- 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2137 rDIQERNEE----IEKLefrVRELEQALLVEDRkHFGAV-EAKPELSLEVQLQAERDAIDRKEKEITNLEEQ-----LE- 2205
Cdd:COG4913 468 -EVRPEEERwrgaIERV---LGGFALTLLVPPE-HYAAAlRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDslagkLDf 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2206 ---QFREELEN---------KNEEVQQLH-----MQLEIQKKESTTR----------------------LQELEQENKLF 2246
Cdd:COG4913 543 kphPFRAWLEAelgrrfdyvCVDSPEELRrhpraITRAGQVKGNGTRhekddrrrirsryvlgfdnrakLAALEAELAEL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2247 KDDMEKLGLAIKESDA--MSTQDQHVLFGKFAQiIQEKEVEIDQLNEQVTKLQQQL-KITTDNKVIEEKNELIRDLETQI 2323
Cdd:COG4913 623 EEELAEAEERLEALEAelDALQERREALQRLAE-YSWDEIDVASAEREIAELEAELeRLDASSDDLAALEEQLEELEAEL 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2324 ECLMSDQECVKRNR---EEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEE 2400
Cdd:COG4913 702 EELEEELDELKGEIgrlEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRAR 781
|
.
gi 22538393 2401 M 2401
Cdd:COG4913 782 L 782
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
3066-3438 |
3.35e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 3.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3066 EYQAAMECLQKADRRSLLSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQMLEMQVElssMKDRATELQEQ 3145
Cdd:PTZ00121 1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE---EAKKADEAKKK 1452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3146 lSSEKMVVAELKSELAQTKLELETTLKAQH-KHLKELEAFRLEVKDKTDEVHllndTLASEQKKSRELQWALEKEKAKLG 3224
Cdd:PTZ00121 1453 -AEEAKKAEEAKKKAEEAKKADEAKKKAEEaKKADEAKKKAEEAKKKADEAK----KAAEAKKKADEAKKAEEAKKADEA 1527
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3225 RSEErDKEELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSE-----EQGRNLELQVLLESEKV 3299
Cdd:PTZ00121 1528 KKAE-EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEeakkaEEARIEEVMKLYEEEKK 1606
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3300 RIREMSSTLDRERELHAQLQSSDGTGQSrpplpsedlLKELQKQLEEKHSRIVELLNETEKYKLDSLQTRQQMEKDRQVH 3379
Cdd:PTZ00121 1607 MKAEEAKKAEEAKIKAEELKKAEEEKKK---------VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA 1677
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22538393 3380 RKTLQTEQEAN--TEGQKKMHELQSKVEDLQRQLEEKRQQVYKLDLEGQRLQGIMQEFQKQ 3438
Cdd:PTZ00121 1678 EEAKKAEEDEKkaAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
3101-3432 |
3.54e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 3.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3101 KREQESEKpSQELLEYNIQQKQSQMLEMQVELSSMKDRATELQEQLssekmvvAELKSELAQTKLELETTLKAQHKHLKE 3180
Cdd:TIGR02168 218 LKAELREL-ELALLVLRLEELREELEELQEELKEAEEELEELTAEL-------QELEEKLEELRLEVSELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3181 LEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLGRSEE---RDKEELEDLKFSLESQKQRNLQLNLLLEQ 3257
Cdd:TIGR02168 290 LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEelaELEEKLEELKEELESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3258 QKQLLNESQQKIESQRMLYdAQLSEEQGRNLELQVLLESEKVRIREMSSTLDRERELHAQlqssdgtgqsrppLPSEDLL 3337
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKV-AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK-------------KLEEAEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3338 KELQKQLEEKHSRIVELLNETEkykldslQTRQQMEKDRQVHRKTLQTEQEANTEGQKKMHELQSkVEDLQRQLEEKRQQ 3417
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELE-------RLEEALEELREELEEAEQALDAAERELAQLQARLDS-LERLQENLEGFSEG 507
|
330
....*....|....*
gi 22538393 3418 VYKLDLEGQRLQGIM 3432
Cdd:TIGR02168 508 VKALLKNQSGLSGIL 522
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2060-2583 |
3.95e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.18 E-value: 3.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2060 KQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKvvprfqpisehqtreveQLANHLKEKTDKCSELLLSKEQLQRDI 2139
Cdd:TIGR04523 50 KNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIK-----------------DLNDKLKKNKDKINKLNSDLSKINSEI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2140 QERNEEIEKLEFRVRELEQALLVEDRKHFgaVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQ 2219
Cdd:TIGR04523 113 KNDKEQKNKLEVELNKLEKQKKENKKNID--KFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNID 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2220 QLHMQLeIQKKESTTRLQELEQENKLFKDDMEKLGlAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQ 2299
Cdd:TIGR04523 191 KIKNKL-LKLELLLSNLKKKIQKNKSLESQISELK-KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQ 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2300 LK-----ITTDNKVIEEKNELIRDLETQIECL---------------MSDQECVKRNREEEIEQLNEVIEKLQQELANIg 2359
Cdd:TIGR04523 269 LSekqkeLEQNNKKIKELEKQLNQLKSEISDLnnqkeqdwnkelkseLKNQEKKLEEIQNQISQNNKIISQLNEQISQL- 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2360 QKTSMNAHS----LSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEKI 2435
Cdd:TIGR04523 348 KKELTNSESenseKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE 427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2436 QSIPENSVNVA---IDHLSKDKPELEVVLTEDALKSLENQTYFKSFEengkGSIINLETRLLQLESTVSAKDLELTQCYK 2512
Cdd:TIGR04523 428 IERLKETIIKNnseIKDLTNQDSVKELIIKNLDNTRESLETQLKVLS----RSINKIKQNLEQKQKELKSKEKELKKLNE 503
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22538393 2513 QIKDMQEQGQFETEMLQKKIVNLQKIVEEKvaaalvSQIQLEAVQEYAKFCQDNQTISSEPERTNIQNLNQ 2583
Cdd:TIGR04523 504 EKKELEEKVKDLTKKISSLKEKIEKLESEK------KEKESKISDLEDELNKDDFELKKENLEKEIDEKNK 568
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
2132-2472 |
3.97e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.67 E-value: 3.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2132 KEQLQRDIQERNEEIEKLEFRVRELEQallVEDRKHFGAVEAKPELSLEVQ-LQAERDAI----DRKEKEITNLEEQLEQ 2206
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNE---LHEKQKFYLRQSVIDLQTKLQeMQMERDAMadirRRESQSQEDLRNQLQN 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2207 FREELEN----KNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEK 2282
Cdd:pfam15921 150 TVHELEAakclKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILREL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2283 EVEIDQLNEQVTKLQQQ---LKITTDNKVieekNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIG 2359
Cdd:pfam15921 230 DTEISYLKGRIFPVEDQleaLKSESQNKI----ELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQ 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2360 Q----KTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSL---------- 2425
Cdd:pfam15921 306 EqarnQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLddqlqkllad 385
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 22538393 2426 --KRERE-SVEKIQSI----PENSVNVAIDHLSK--DKPELEVVLTEDALKSLENQ 2472
Cdd:pfam15921 386 lhKREKElSLEKEQNKrlwdRDTGNSITIDHLRRelDDRNMEVQRLEALLKAMKSE 441
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
373-900 |
5.01e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.23 E-value: 5.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 373 IKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRnhkdsqfetdiVQRMEqETQRKLEQLRAELDEMYGQqiVQMKQEL 452
Cdd:PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEKLEKE-----------VKELE-ELKEEIEELEKELESLEGS--KRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 453 IRQHMAQMEEMKTRHKGEMENALRSysnitvneDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLED 532
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKVKEL--------KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 533 LvEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELEL-KHEAEVTNYKIKLEMLEKEKNAVL 611
Cdd:PRK03918 333 L-EEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPeKLEKELEELEKAKEEIEEEISKIT 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 612 DRMAEsQEAELERLRTQLlfsheEELSKLKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITK 691
Cdd:PRK03918 412 ARIGE-LKKEIKELKKAI-----EELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELREL 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 692 QNQLILE--ISKLKDLQQSLVNSKS-----------------EEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKT 752
Cdd:PRK03918 486 EKVLKKEseLIKLKELAEQLKELEEklkkynleelekkaeeyEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 753 ELLEKQMKEKENDLQEK-FAQLEAENSILKDEKKTLEDMLKIHTPVSQ-EERLIFLDSIKSKSKDSvwekeieilIEENE 830
Cdd:PRK03918 566 DELEEELAELLKELEELgFESVEELEERLKELEPFYNEYLELKDAEKElEREEKELKKLEEELDKA---------FEELA 636
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22538393 831 DLKQQCIQLNEEIEKQRNTFSFAE-KNFEVNYQELQEEYACLLKVKDDLEDSKNkqelEYKSKLKALNEEL 900
Cdd:PRK03918 637 ETEKRLEELRKELEELEKKYSEEEyEELREEYLELSRELAGLRAELEELEKRRE----EIKKTLEKLKEEL 703
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
161-949 |
5.18e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 5.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 161 ESELAGKQHEIEELNRELEEMRVTYGTEGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQI 240
Cdd:PTZ00121 1089 ADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEE 1168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 241 --QFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDftmqisflqekikvYEMEQDKKVEN 318
Cdd:PTZ00121 1169 arKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDA--------------KKAEAVKKAEE 1234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 319 SNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKnmkleltnsKQKERQSSEEIKQlm 398
Cdd:PTZ00121 1235 AKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKK---------KADEAKKAEEKKK-- 1303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 399 gtVEELQKRnhKDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQ-QIVQMKQELIRQHMAQMEEMKTRHKGEMENALRS 477
Cdd:PTZ00121 1304 --ADEAKKK--AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAaEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 478 YSNITVNEDQIKlmnvAINELNIKLQDTNSQKEKLKEELGlilEEKCAlqrqledlvEELSFSREQIQRARQTI--AEQE 555
Cdd:PTZ00121 1380 ADAAKKKAEEKK----KADEAKKKAEEDKKKADELKKAAA---AKKKA---------DEAKKKAEEKKKADEAKkkAEEA 1443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 556 SKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEvtnykiklemlEKEKNAVLDRMAESQEAELERLRTQllfshEE 635
Cdd:PTZ00121 1444 KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE-----------EAKKADEAKKKAEEAKKKADEAKKA-----AE 1507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 636 ELSKLKEDLEIEHRINIEKLKdnlgihykqqidglQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSE 715
Cdd:PTZ00121 1508 AKKKADEAKKAEEAKKADEAK--------------KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE 1573
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 716 EmtlQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLKIHT 795
Cdd:PTZ00121 1574 E---DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE 1650
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 796 PVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEYACLLKvK 875
Cdd:PTZ00121 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEEN-K 1729
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22538393 876 DDLEDSKNKQELEYKSKLKALNEELHLQRInpTTVKMKSSVFDEDKTFVAETLEMGEVVEKDTTELMEKLEVTK 949
Cdd:PTZ00121 1730 IKAEEAKKEAEEDKKKAEEAKKDEEEKKKI--AHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
3147-3438 |
5.78e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 5.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3147 SSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLGRS 3226
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3227 EER------DKEELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGR----NLELQVLLES 3296
Cdd:TIGR02168 746 EERiaqlskELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEltllNEEAANLRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3297 EKVRIREMSSTLDRERELHAQLQSSDGTGQSrpplpSEDLLKELQKQLEEKHSRIVELLNEtekykldslqtRQQMEKDR 3376
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIES-----LAAEIEELEELIEELESELEALLNE-----------RASLEEAL 889
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22538393 3377 QVHRKTLQTEQEantegqkKMHELQSKVEDLQRQLEEKRQQVYKLDLEGQRLQGIMQEFQKQ 3438
Cdd:TIGR02168 890 ALLRSELEELSE-------ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
311-793 |
5.83e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 5.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 311 EQDKKVENSNKEEIQEKETiiEELNTKIiEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLElTNSKQKERQS 390
Cdd:PTZ00121 1454 EEAKKAEEAKKKAEEAKKA--DEAKKKA-EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE-EAKKADEAKK 1529
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 391 SEEIKQlmgtVEELQKRNHKDSQFETDIVQRMEQ-ETQRKLEQLRAELDEMYG--------QQIVQMKQELIRQHMAQME 461
Cdd:PTZ00121 1530 AEEAKK----ADEAKKAEEKKKADELKKAEELKKaEEKKKAEEAKKAEEDKNMalrkaeeaKKAEEARIEEVMKLYEEEK 1605
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 462 EMKTRHKGEMENALRSYSNITVNEDQIKlmnvAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLED---LVEELS 538
Cdd:PTZ00121 1606 KMKAEEAKKAEEAKIKAEELKKAEEEKK----KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEdkkKAEEAK 1681
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 539 FSREQIQRARQTIA--EQESKLNEAHKSLSTVEDLKAEIVSASESRKEL---ELKHEAEVTNYKIKLEMLEKEKNAVLDR 613
Cdd:PTZ00121 1682 KAEEDEKKAAEALKkeAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIkaeEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 614 MAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQN 693
Cdd:PTZ00121 1762 LKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNM 1841
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 694 QliLEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILR--QEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLqeKFA 771
Cdd:PTZ00121 1842 Q--LEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEddEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDI--IDD 1917
|
490 500
....*....|....*....|..
gi 22538393 772 QLEAENSILKDEKKTLEDMLKI 793
Cdd:PTZ00121 1918 KLDKDEYIKRDAEETREEIIKI 1939
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
156-593 |
6.58e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.89 E-value: 6.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 156 HLEMMESELAGKQHEIEELNRELEEMRVTYGT--EGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREfleLTE 233
Cdd:pfam15921 445 QMERQMAAIQGKNESLEKVSSLTAQLESTKEMlrKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAE---ITK 521
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 234 QSQKLQIQFQQLQasetlrnstHSSTAADLLQ-AKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEME- 311
Cdd:pfam15921 522 LRSRVDLKLQELQ---------HLKNEGDHLRnVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEk 592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 312 -QDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLEL---KDKLTTADKLLGELQEQIVQKNQEIKNmklELTNSKQKE 387
Cdd:pfam15921 593 aQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLeleKVKLVNAGSERLRAVKDIKQERDQLLN---EVKTSRNEL 669
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 388 RQSSEEIkqlmgtveELQKRNHKDSQFEtdivqrMEQETQRKLEQLRAELDEMygqqivqmkqeliRQHMAQMEEMKTRH 467
Cdd:pfam15921 670 NSLSEDY--------EVLKRNFRNKSEE------METTTNKLKMQLKSAQSEL-------------EQTRNTLKSMEGSD 722
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 468 KGEMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRA 547
Cdd:pfam15921 723 GHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRL 802
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 22538393 548 RQTIAEQESKLNEAHKSLSTVEDLkaeIVSASESRKELELKHEAEV 593
Cdd:pfam15921 803 KEKVANMEVALDKASLQFAECQDI---IQRQEQESVRLKLQHTLDV 845
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2058-2626 |
9.53e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.07 E-value: 9.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2058 LEKQLEKMRKFL------DEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLS 2131
Cdd:PRK03918 174 IKRRIERLEKFIkrteniEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGS 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2132 KEQLQRDIQERNEEIEKLEFRVRELEqallvEDRKHFGAVEAKPE--LSLEVQLQAERDAIDRKEKEITNLEEQLEQFRE 2209
Cdd:PRK03918 254 KRKLEEKIRELEERIEELKKEIEELE-----EKVKELKELKEKAEeyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2210 ---ELENKNEEVQqlhmQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDqhvlfgkfaqiIQEKEVEI 2286
Cdd:PRK03918 329 rikELEEKEERLE----ELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLT-----------PEKLEKEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2287 DQLNEQVTKLQQQLKittdnKVIEEKNEL---IRDLETQIECLMSDQ-ECVKRNREEEIEQLNEVIEKLQQELANIgQKT 2362
Cdd:PRK03918 394 EELEKAKEEIEEEIS-----KITARIGELkkeIKELKKAIEELKKAKgKCPVCGRELTEEHRKELLEEYTAELKRI-EKE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2363 SMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETAnEEMTFMKNVLKETNF-KMNQLTQELFSLKRERESVEKIQSIPEN 2441
Cdd:PRK03918 468 LKEIEEKERKLRKELRELEKVLKKESELIKLKELA-EQLKELEEKLKKYNLeELEKKAEEYEKLKEKLIKLKGEIKSLKK 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2442 SVNvAIDHLSKDKPELEVVL--TEDALKSLENQtyfksFEENGKGSIINLETRLLQLEStVSAKDLELTQCYKQIKDMQE 2519
Cdd:PRK03918 547 ELE-KLEELKKKLAELEKKLdeLEEELAELLKE-----LEELGFESVEELEERLKELEP-FYNEYLELKDAEKELEREEK 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2520 QGQFETEMLQKKIVNLQKIveEKVAAALVSQIQlEAVQEYakfcqdnqtisSEPERTNIQNlnqlREDELGSDISALTLR 2599
Cdd:PRK03918 620 ELKKLEEELDKAFEELAET--EKRLEELRKELE-ELEKKY-----------SEEEYEELRE----EYLELSRELAGLRAE 681
|
570 580
....*....|....*....|....*..
gi 22538393 2600 ISELESQVVEMHTSLILEKEQVEIAEK 2626
Cdd:PRK03918 682 LEELEKRREEIKKTLEKLKEELEEREK 708
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
272-776 |
1.01e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.05 E-value: 1.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 272 THQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQdkkvensnkEEIQEKETIIEELNTKIIEEEKKTLELKDK 351
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERR---------EELETLEAEIEDLRETIAETEREREELAEE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 352 LTTADKLLGEL-----------------QEQIVQKNQEIKNMKLELTNSKQKERQS----SEEIKQLMGTVEELQKRNHK 410
Cdd:PRK02224 281 VRDLRERLEELeeerddllaeaglddadAEAVEARREELEDRDEELRDRLEECRVAaqahNEEAESLREDADDLEERAEE 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 411 --------DSQFETDIVQRMEQETQrkLEQLRAELDEM---YGQQIVQMKQELIRQHMAQMEEMKTRHK-GEMENALRSY 478
Cdd:PRK02224 361 lreeaaelESELEEAREAVEDRREE--IEELEEEIEELrerFGDAPVDLGNAEDFLEELREERDELREReAELEATLRTA 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 479 SNiTVNEDQIKL---------MNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQR---QLEDLVE---ELSFSREQ 543
Cdd:PRK02224 439 RE-RVEEAEALLeagkcpecgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEErleRAEDLVEaedRIERLEER 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 544 IQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMaesqeAELE 623
Cdd:PRK02224 518 REDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERI-----ESLE 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 624 RLRTQL--LFSHEEELSKLKEDLEIEHRINIEKlKDNLGiHYKQQIDGLQNEMSQ-KIETMQFEKDNLITKQNQlileis 700
Cdd:PRK02224 593 RIRTLLaaIADAEDEIERLREKREALAELNDER-RERLA-EKRERKRELEAEFDEaRIEEAREDKERAEEYLEQ------ 664
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22538393 701 klkdlqqslVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKEnDLQEKFAQLEAE 776
Cdd:PRK02224 665 ---------VEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALEALYDEAE-ELESMYGDLRAE 730
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1981-2379 |
1.20e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.12 E-value: 1.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1981 EAMKAEA-GPVEQQL--LQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEI------DVEEQVSRFIELEQEKNTELMDL 2051
Cdd:pfam15921 436 KAMKSECqGQMERQMaaIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAkkmtleSSERTVSDLTASLQEKERAIEAT 515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2052 RQQNQALEKQLEKMRKFLDEQAIDREHERDVfQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANhlkEKTDKCSELLLS 2131
Cdd:pfam15921 516 NAEITKLRSRVDLKLQELQHLKNEGDHLRNV-QTECEALKLQMAEKDKVIEILRQQIENMTQLVG---QHGRTAGAMQVE 591
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2132 KEQLQRDIQERNEEIEKLEF-------RVRELEQALLVEDRKHFGAVEAKPELSLEVQ-LQAERDAIDRKEK----EITN 2199
Cdd:pfam15921 592 KAQLEKEINDRRLELQEFKIlkdkkdaKIRELEARVSDLELEKVKLVNAGSERLRAVKdIKQERDQLLNEVKtsrnELNS 671
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2200 LEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTrlqELEQENKLFKDDMEKLGLAIKESDAMSTQdqhvlfgkfaqiI 2279
Cdd:pfam15921 672 LSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQS---ELEQTRNTLKSMEGSDGHAMKVAMGMQKQ------------I 736
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2280 QEKEVEIDQLNEQVTKLQQQLKITTDNK--VIEEKNELIRDLETqieclmsdQECVKRNREEEIEQLNEVIEKLQQELAN 2357
Cdd:pfam15921 737 TAKRGQIDALQSKIQFLEEAMTNANKEKhfLKEEKNKLSQELST--------VATEKNKMAGELEVLRSQERRLKEKVAN 808
|
410 420
....*....|....*....|..
gi 22538393 2358 IGQKTSMNAHSLSEEADSLKHQ 2379
Cdd:pfam15921 809 MEVALDKASLQFAECQDIIQRQ 830
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1976-2300 |
1.65e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 1.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1976 LSRQKeAMKAEAGPVEQQLlqetekLMKEKLEVQCQAEKVRDDLQkqvkaleiDVEEQVSRFIELEQEKNTELMDLRQQN 2055
Cdd:TIGR02169 210 AERYQ-ALLKEKREYEGYE------LLKEKEALERQKEAIERQLA--------SLEEELEKLTEEISELEKRLEEIEQLL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2056 QALEKQLEKMrkfldeqaidREHERDVFQQEIQKLEQQLKVVPRFQPISEhqtREVEQLANHLKEKTDKCSELLLSKEQL 2135
Cdd:TIGR02169 275 EELNKKIKDL----------GEEEQLRVKEKIGELEAEIASLERSIAEKE---RELEDAEERLAKLEAEIDKLLAEIEEL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2136 QRDIQERNEEIEKLEFRVRELEQallvEDRKHFGAVEakpelSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKN 2215
Cdd:TIGR02169 342 EREIEEERKRRDKLTEEYAELKE----ELEDLRAELE-----EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQ 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2216 EEVQQLHMQLEIQKKEsttrLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLfGKFAQIIQEKEVEIDQLNEQVTK 2295
Cdd:TIGR02169 413 EELQRLSEELADLNAA----IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL-SKYEQELYDLKEEYDRVEKELSK 487
|
....*
gi 22538393 2296 LQQQL 2300
Cdd:TIGR02169 488 LQREL 492
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
501-1163 |
1.72e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 1.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 501 KLQDTnsqKEKLkEELGLILEEkcaLQRQLEDLveelsfsREQIQRAR--QTIAEQESKLnEAHKSLSTVEDLKAEIVSA 578
Cdd:COG1196 180 KLEAT---EENL-ERLEDILGE---LERQLEPL-------ERQAEKAEryRELKEELKEL-EAELLLLKLRELEAELEEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 579 SESRKELELKHEAEVTnykiKLEMLEKEKnavldrmaESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDn 658
Cdd:COG1196 245 EAELEELEAELEELEA----ELAELEAEL--------EELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR- 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 659 lgIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEmtlqINELQKEIEILRQEEKEK 738
Cdd:COG1196 312 --RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL----LEAEAELAEAEEELEELA 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 739 GTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLKIHTPVSQEERLIfldsikskskdsvw 818
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE-------------- 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 819 ekeieilieenEDLKQQCIQLNEEIEKQRNTFSFAEKNfevnYQELQEEYACLLKVKDDLEDSKNKQELEYKSKLKALNE 898
Cdd:COG1196 452 -----------AELEEEEEALLELLAELLEEAALLEAA----LAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLL 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 899 ELhlQRINPTTVKMKSSVFDEDKTFVAETLE--MGEVVEKDTTELMEKLEVTKREK------LELSQRLSDLSEQLKQKH 970
Cdd:COG1196 517 AG--LRGLAGAVAVLIGVEAAYEAALEAALAaaLQNIVVEDDEVAAAAIEYLKAAKagratfLPLDKIRARAALAAALAR 594
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 971 GEISFLNEEVKSLKQEKEQVSLRCRE--LEIIINHNRAENVQscdtQVSSLLDGVVTMTSRGAEGsvskvnksfGEESKI 1048
Cdd:COG1196 595 GAIGAAVDLVASDLREADARYYVLGDtlLGRTLVAARLEAAL----RRAVTLAGRLREVTLEGEG---------GSAGGS 661
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1049 MVEDKVSFENMTVGEESKQEQLILDHLPSVTKESSLRATQPSENDKLQKELNVLKSEQNDLRLQMEAQRicLSLVYSTHV 1128
Cdd:COG1196 662 LTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL--EAEREELLE 739
|
650 660 670
....*....|....*....|....*....|....*
gi 22538393 1129 DQVREYMENEKDKALCSLKEELIFAQEEKIKELQK 1163
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELERELERLER 774
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
157-440 |
1.82e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 1.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 157 LEMMESELAGKQHEIEELNRELEEMRVtYGTEGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQ 236
Cdd:TIGR02168 735 LARLEAEVEQLEERIAQLSKELTELEA-EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 237 KLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQIsflqekikvyemeqdkkv 316
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL------------------ 875
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 317 eNSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQkerQSSEEIKQ 396
Cdd:TIGR02168 876 -EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE---RLSEEYSL 951
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 22538393 397 LMGTVEELQKRNHKDsqfetdivqrmEQETQRKLEQLRAELDEM 440
Cdd:TIGR02168 952 TLEEAEALENKIEDD-----------EEEARRRLKRLENKIKEL 984
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
2012-2395 |
2.24e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.89 E-value: 2.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2012 AEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKmRKFLD--EQAIDR--------EHERD 2081
Cdd:PRK02224 197 EEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEER-REELEtlEAEIEDlretiaetERERE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2082 VFQQEIQKLEQQLKVVPR----FQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELE 2157
Cdd:PRK02224 276 ELAEEVRDLRERLEELEEerddLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2158 QAllvedrkhfgAVEAKPELS-LEVQLQAERDAIDRKEKEITNLEEQLEQFREELEN---KNEEVQQLHMQLEIQKKEST 2233
Cdd:PRK02224 356 ER----------AEELREEAAeLESELEEAREAVEDRREEIEELEEEIEELRERFGDapvDLGNAEDFLEELREERDELR 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2234 TRLQELEQENKLFKDDMEKlGLAIKESDAMSTQDQHVLFGKFAQIIQEKEV-------EIDQLNEQVTKLQQQLKITTDN 2306
Cdd:PRK02224 426 EREAELEATLRTARERVEE-AEALLEAGKCPECGQPVEGSPHVETIEEDRErveeleaELEDLEEEVEEVEERLERAEDL 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2307 KVIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQElaniGQKTSMNAHSLSEEADSLKHQLDVVIAE 2386
Cdd:PRK02224 505 VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAE----AEEKREAAAEAEEEAEEAREEVAELNSK 580
|
....*....
gi 22538393 2387 KLALEQQVE 2395
Cdd:PRK02224 581 LAELKERIE 589
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2206-2434 |
2.25e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 2.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2206 QFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQhvlfgKFAQIIQEKEVE 2285
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE-----KLKERLEELEED 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2286 IDQLNEQVTKLQQQLKitTDNKVIEEKNELIRDLETQIECL--MSDQECVkRNREEEIEQLNEVIEKLQQELANIGQKTS 2363
Cdd:TIGR02169 746 LSSLEQEIENVKSELK--ELEARIEELEEDLHKLEEALNDLeaRLSHSRI-PEIQAELSKLEEEVSRIEARLREIEQKLN 822
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22538393 2364 ---MNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEK 2434
Cdd:TIGR02169 823 rltLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2038-2437 |
2.72e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.49 E-value: 2.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2038 IELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQaidreherdvfQQEIQKLEQQLKVvprfqpISEHQTREVEQLANH 2117
Cdd:TIGR04523 210 IQKNKSLESQISELKKQNNQLKDNIEKKQQEINEK-----------TTEISNTQTQLNQ------LKDEQNKIKKQLSEK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2118 LKEkTDKCSELLlskEQLQRDIQERNEEIEKLEfrvRELEQALLVEDRKHFGAVEAKPElSLEVQLQAERDAIDRKEKEI 2197
Cdd:TIGR04523 273 QKE-LEQNNKKI---KELEKQLNQLKSEISDLN---NQKEQDWNKELKSELKNQEKKLE-EIQNQISQNNKIISQLNEQI 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2198 TNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQenklFKDDMEKLGLAIKESDAMSTQDQHVLfGKFAQ 2277
Cdd:TIGR04523 345 SQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKN----LESQINDLESKIQNQEKLNQQKDEQI-KKLQQ 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2278 IIQEKEVEIDQLNEQVTKLQQQLK-----ITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNREE---EIEQLNEVIE 2349
Cdd:TIGR04523 420 EKELLEKEIERLKETIIKNNSEIKdltnqDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQkqkELKSKEKELK 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2350 KLQQELANIGQKTSmnahSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFK--MNQLTQELFSLKR 2427
Cdd:TIGR04523 500 KLNEEKKELEEKVK----DLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEkeIDEKNKEIEELKQ 575
|
410
....*....|
gi 22538393 2428 ERESVEKIQS 2437
Cdd:TIGR04523 576 TQKSLKKKQE 585
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
317-998 |
2.76e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 2.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 317 ENSNKEEIQEKETIIEELNTKIIEEEKKTLE-----LKDKLTTADKLLGELQEQIVQKNQEIKNMKLEL-TNSKQKERQS 390
Cdd:TIGR02169 206 EREKAERYQALLKEKREYEGYELLKEKEALErqkeaIERQLASLEEELEKLTEEISELEKRLEEIEQLLeELNKKIKDLG 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 391 SEEIKQLMGTVEELQ------KRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQqiVQMKQELIRQHMAQMEEMK 464
Cdd:TIGR02169 286 EEEQLRVKEKIGELEaeiaslERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE--IEEERKRRDKLTEEYAELK 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 465 TRhkgemENALRSysnitvnedQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQI 544
Cdd:TIGR02169 364 EE-----LEDLRA---------ELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAI 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 545 QRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAELER 624
Cdd:TIGR02169 430 AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 625 LRTQLLFSHE--------EELSKLKED--LEIE----HRIN-------------IEKLKD-NLG---------------- 660
Cdd:TIGR02169 510 RAVEEVLKASiqgvhgtvAQLGSVGERyaTAIEvaagNRLNnvvveddavakeaIELLKRrKAGratflplnkmrderrd 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 661 ---IHYKQQIDGLQN--EMSQKIE-----------------------------TMQ---FEKDNLIT----KQNQLILEI 699
Cdd:TIGR02169 590 lsiLSEDGVIGFAVDlvEFDPKYEpafkyvfgdtlvvedieaarrlmgkyrmvTLEgelFEKSGAMTggsrAPRGGILFS 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 700 SKLKDlqqslvnsKSEEMTLQINELQKEIEILRQE----EKEKGTLEQEVQELQLKTELLEK---QMKEKENDLQEKFAQ 772
Cdd:TIGR02169 670 RSEPA--------ELQRLRERLEGLKRELSSLQSElrriENRLDELSQELSDASRKIGEIEKeieQLEQEEEKLKERLEE 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 773 LEAENSILKDEKKTLEDMLKihtpvSQEERLIFLDSIKSKSKDSVwekeieilieenedlkqqciqlnEEIEKQRNTFSF 852
Cdd:TIGR02169 742 LEEDLSSLEQEIENVKSELK-----ELEARIEELEEDLHKLEEAL-----------------------NDLEARLSHSRI 793
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 853 AEKNFEvnYQELQEEYACLLKVKDDLEDSKNKQELEYKSKLKALNEELHLQRINPTTVKMKSSVFDEDKTFVAETLEMGE 932
Cdd:TIGR02169 794 PEIQAE--LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELE 871
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22538393 933 VVEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRELE 998
Cdd:TIGR02169 872 ELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIE 937
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
424-791 |
3.53e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 3.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 424 QETQRKLEQLRAELDemygqQIVQMKQELIRQ--HMAQMEEMKTRHKgEMENALRsysnitvnEDQIKLMNVAINELNIK 501
Cdd:TIGR02168 175 KETERKLERTRENLD-----RLEDILNELERQlkSLERQAEKAERYK-ELKAELR--------ELELALLVLRLEELREE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 502 LQDTNSQKEKLKEELGlileekcALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAhksLSTVEDLKAEIVSASES 581
Cdd:TIGR02168 241 LEELQEELKEAEEELE-------ELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL---ANEISRLEQQKQILRER 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 582 RKELELKHEAevtnYKIKLEMLEKEKNAVLDRMAEsQEAELERLRTQLLfSHEEELSKLKEDLEIEHRINIEKlkdnlgi 661
Cdd:TIGR02168 311 LANLERQLEE----LEAQLEELESKLDELAEELAE-LEEKLEELKEELE-SLEAELEELEAELEELESRLEEL------- 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 662 hyKQQIDGLQNEMSQKIETMQfekdnliTKQNQLILEISKLKDLQQSLVNSKSE----EMTLQINELQKEIEILRQEEKE 737
Cdd:TIGR02168 378 --EEQLETLRSKVAQLELQIA-------SLNNEIERLEARLERLEDRRERLQQEieelLKKLEEAELKELQAELEELEEE 448
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 22538393 738 KGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAensiLKDEKKTLEDML 791
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQ----LQARLDSLERLQ 498
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
489-1168 |
3.68e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.44 E-value: 3.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 489 KLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELsfsreqIQRARQTIAEQESKLNEAHKSLSTV 568
Cdd:pfam02463 218 KLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEK------LAQVLKENKEEEKEKKLQEEELKLL 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 569 EDLKAEIVSASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEH 648
Cdd:pfam02463 292 AKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQL 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 649 RINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLIL--EISKLKDLQQSLVNSKSEEMTLQINELQK 726
Cdd:pfam02463 372 EEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLlkEEKKEELEILEEEEESIELKQGKLTEEKE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 727 EIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLKIH-----TPVSQEE 801
Cdd:pfam02463 452 ELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGvggriISAHGRL 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 802 RLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFS-FAEKNFEVNYQELQEEYACLLKVKDDLED 880
Cdd:pfam02463 532 GDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRlLIPKLKLPLKSIAVLEIDPILNLAQLDKA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 881 SKNKQELEYKSKLKALNEELHLQRINPTTVKMKSSVFDEDKTFVAETLEMGEV---VEKDTTELMEKLEVTKREKLELsQ 957
Cdd:pfam02463 612 TLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVkasLSELTKELLEIQELQEKAESEL-A 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 958 RLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRELEIIINHNRAENVQSCDTQVSSLLdgvvtmtsRGAEGSVSK 1037
Cdd:pfam02463 691 KEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEE--------KSRLKKEEK 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1038 VNKSFGEESKIMVEDKVSFENMTVGEESKQEQLILDHLPSVTKESSLRATQPSENDKLQKELNVLKSEQNdLRLQMEAQR 1117
Cdd:pfam02463 763 EEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKE-EELEELALE 841
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 22538393 1118 ICLSLVYSTHVDQVREYMENEKDKALCSLKEELIFAQEEKIKELQKIHQLE 1168
Cdd:pfam02463 842 LKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKE 892
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
322-547 |
3.99e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 3.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 322 EEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTV 401
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 402 EELQKRNHKdsqfETDIVQRMEQETQRKL-----EQLRAELDEMYGQQIVQMKQELIRQHMAQMEEMKTRHKGEMENALR 476
Cdd:COG4942 100 EAQKEELAE----LLRALYRLGRQPPLALllspeDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22538393 477 SYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRA 547
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
161-366 |
4.51e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 4.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 161 ESELAGKQHEIEELNRELEEMRVTYgTEGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQI 240
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEE-KALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 241 QFQQlQASETLRNSTHSS-----TAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDKK 315
Cdd:COG4942 105 ELAE-LLRALYRLGRQPPlalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 22538393 316 VENSNK--EEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQI 366
Cdd:COG4942 184 EEERAAleALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
2133-2349 |
4.55e-06 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 52.94 E-value: 4.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2133 EQLQRDIQERNEEIEKLEFRVRELEQALLVEDRKhfgAVEAKPELSLevqLQAERDAIDRKEKEITNLEEQLEQFREELE 2212
Cdd:COG2433 409 TEEEEEIRRLEEQVERLEAEVEELEAELEEKDER---IERLERELSE---ARSEERREIRKDREISRLDREIERLERELE 482
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2213 NKNEEVQQLHMQLEIQKkesttRLQELEQENKLF---------KDDMEKL--GLAIKESDAMSTQDQHVLFGKFAQIIQE 2281
Cdd:COG2433 483 EERERIEELKRKLERLK-----ELWKLEHSGELVpvkvvekftKEAIRRLeeEYGLKEGDVVYLRDASGAGRSTAELLAE 557
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22538393 2282 KEVEI----DQLNEQVTKLQQQLKI---TTDNKVIEEKNEL----IRDLETQIECLMSDQEcvKRNREEEIEQLNEVIE 2349
Cdd:COG2433 558 AGPRAvivpGELSEAADEVLFEEGIpvlPAEDVTIQEVDDLavvdEEELEAAIEDWEERAE--ERRREKKAEMLERLIS 634
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
140-645 |
4.59e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 4.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 140 GVDDSYSEQGAQDSPTHLEMMESELAGKQHEIEELNRELEEMRVTygtegLQQLQEFEAAIKQRDGIITQLTANLQQARR 219
Cdd:PRK02224 191 QLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARET-----RDEADEVLEEHEERREELETLEAEIEDLRE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 220 EKDETMREFLELTEQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQIS 299
Cdd:PRK02224 266 TIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 300 FLQEKIKVYEMEQDKKVE---------NSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKN 370
Cdd:PRK02224 346 SLREDADDLEERAEELREeaaeleselEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELR 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 371 QEIKnmklELTNSKQKERQSSEEIKQLM---------------GTVEELQKRNHKDSQFETDIVQRMEQETQR------- 428
Cdd:PRK02224 426 EREA----ELEATLRTARERVEEAEALLeagkcpecgqpvegsPHVETIEEDRERVEELEAELEDLEEEVEEVeerlera 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 429 -KLEQLRAELDEMygQQIVQMKQELIRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNS 507
Cdd:PRK02224 502 eDLVEAEDRIERL--EERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNS 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 508 QKEKLKEELGLI--LEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLStvEDLKAEIVSASESRKEL 585
Cdd:PRK02224 580 KLAELKERIESLerIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELE--AEFDEARIEEAREDKER 657
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22538393 586 ELKHEAEVTNykiKLEMLEKEKNAVLDR--MAESQEAELERLRTQLlfsheEELSKLKEDLE 645
Cdd:PRK02224 658 AEEYLEQVEE---KLDELREERDDLQAEigAVENELEELEELRERR-----EALENRVEALE 711
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
2063-2253 |
5.23e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 50.69 E-value: 5.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2063 EKMRKFLDEQAIDreherdvfqQEIQKLEQQLKVVPRfqpisehqtrEVEQLANHLKEKTDKCSELLLSKEQLQRDIQER 2142
Cdd:COG1579 4 EDLRALLDLQELD---------SELDRLEHRLKELPA----------ELAELEDELAALEARLEAAKTELEDLEKEIKRL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2143 NEEIEKLEFRVRELEQALL-VEDRKHFGAveakpelsLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQL 2221
Cdd:COG1579 65 ELEIEEVEARIKKYEEQLGnVRNNKEYEA--------LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAEL 136
|
170 180 190
....*....|....*....|....*....|..
gi 22538393 2222 HMQLEIQKKESTTRLQELEQENKLFKDDMEKL 2253
Cdd:COG1579 137 EAELEEKKAELDEELAELEAELEELEAEREEL 168
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1796-2434 |
5.76e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 5.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1796 PSYSGSDMPRNDINMWSKVTEEGTELSQRLVRSGFAGTEIDPENEELMlnissRLQAAVEKLLEA-ISETSSQLEHAKVT 1874
Cdd:PTZ00121 1074 PSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAK-----KKAEDARKAEEArKAEDARKAEEARKA 1148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1875 QTELMRESFRQKQEATESLKCQEELRERLHEESRAREQL--AVELSKAEGVIDGYADEKTLFERQIQEktdiIDRLEQEL 1952
Cdd:PTZ00121 1149 EDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVrkAEELRKAEDARKAEAARKAEEERKAEE----ARKAEDAK 1224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1953 LCASNRLQELEAEQQQIQEERELLSRQKEAMKAEagpvEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQvKALEIDVEE 2032
Cdd:PTZ00121 1225 KAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFE----EARMAHFARRQAAIKAEEARKADELKKAEEKK-KADEAKKAE 1299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2033 QVSRFIELEQ--EKNTELMDLRQQNQALEKQLEKMRKfldeQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTRE 2110
Cdd:PTZ00121 1300 EKKKADEAKKkaEEAKKADEAKKKAEEAKKKADAAKK----KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE 1375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2111 VEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVEDRKHFGAVEAKPELSLEVQlQAERDAI 2190
Cdd:PTZ00121 1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKAD-EAKKKAE 1454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2191 DRKEKEitNLEEQLEQFR--EELENKNEE---VQQLHMQLEIQKKEStTRLQELEQENKlfKDDMEKLGLAIKESDAMST 2265
Cdd:PTZ00121 1455 EAKKAE--EAKKKAEEAKkaDEAKKKAEEakkADEAKKKAEEAKKKA-DEAKKAAEAKK--KADEAKKAEEAKKADEAKK 1529
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2266 QDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIEclmsdqecVKRNREEEIEQLN 2345
Cdd:PTZ00121 1530 AEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK--------AEEARIEEVMKLY 1601
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2346 EVIEKLQQELANIGQKTSMNAHSL--SEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELF 2423
Cdd:PTZ00121 1602 EEEKKMKAEEAKKAEEAKIKAEELkkAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
|
650
....*....|.
gi 22538393 2424 SLKRERESVEK 2434
Cdd:PTZ00121 1682 KAEEDEKKAAE 1692
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2133-2300 |
6.45e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 6.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2133 EQLQRDIQERNEEIEKLEFRVRELEQAL--LVEDRKHFGAVEAKPELSLEV--------QLQAERDAIDRKEKEITNLEE 2202
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELdaLQERREALQRLAEYSWDEIDVasaereiaELEAELERLDASSDDLAALEE 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2203 QLEQFREELENKNEEVQQLhmQLEIQKKEST-TRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQE 2281
Cdd:COG4913 693 QLEELEAELEELEEELDEL--KGEIGRLEKElEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELREN 770
|
170
....*....|....*....
gi 22538393 2282 KEVEIDQLNEQVTKLQQQL 2300
Cdd:COG4913 771 LEERIDALRARLNRAEEEL 789
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1978-2755 |
6.80e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 52.67 E-value: 6.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1978 RQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQA 2057
Cdd:pfam02463 205 QAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQ 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2058 LEKQLEKMRKFLdeqaidreherdvfQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKcSELLLSKEQLQR 2137
Cdd:pfam02463 285 EEELKLLAKEEE--------------ELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEI-EELEKELKELEI 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2138 DIQERNEEIEKLEFRVRELEQALLVEDRKHfgaveakpelSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEE 2217
Cdd:pfam02463 350 KREAEEEEEEELEKLQEKLEQLEEELLAKK----------KLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLED 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2218 VQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDamstqdqhvlfgkfaqIIQEKEVEIDQLNEQVTKLQ 2297
Cdd:pfam02463 420 LLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKD----------------ELELKKSEDLLKETQLVKLQ 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2298 QQLKittdnkvieekneliRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSlk 2377
Cdd:pfam02463 484 EQLE---------------LLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIS-- 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2378 hqlDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEKIQSIPENSVNVAIDHLSKDKPEL 2457
Cdd:pfam02463 547 ---TAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAK 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2458 EVVLTEDALKSLENQTYFKSFEenGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQK 2537
Cdd:pfam02463 624 VVEGILKDTELTKLKESAKAKE--SGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEI 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2538 IVEEKVAAALVSQIQLEAVQEYAKFCQDNQTISSEPERTNIQNLNQLREDELGSDISALTLRISELESQVVEMHTSLILE 2617
Cdd:pfam02463 702 KKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEERE 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2618 KEQVEIAEKNVLEKE-KKLLELQKLLEGNEKKQREKEKKRSPQDVEVLKTTTELFHSNEESGFFNELEALRAESVATK-- 2694
Cdd:pfam02463 782 KTEKLKVEEEKEEKLkAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLee 861
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22538393 2695 --AELASYKEKAEKLQEELLVKETNMTSLQKDLSQVRDHLAEAKEKLSILEKEDETEVQESKK 2755
Cdd:pfam02463 862 eiTKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIK 924
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
510-1023 |
8.50e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 8.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 510 EKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLstvEDLKAEIVSASESRKELElKH 589
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSEL---PELREELEKLEKEVKELE-EL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 590 EAEVTNYKIKLEMLEKEKNAV------LDRMAESQEAELERLRTQLLFSHE--------EELSKLKEDLEIEHRiNIEKL 655
Cdd:PRK03918 237 KEEIEELEKELESLEGSKRKLeekireLEERIEELKKEIEELEEKVKELKElkekaeeyIKLSEFYEEYLDELR-EIEKR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 656 KDNlgihYKQQIDGLQNEMSqKIETMQFEKDNLITKQNQLILEISKLKdlqqslvnsKSEEMTLQINELQKEIEILRQEE 735
Cdd:PRK03918 316 LSR----LEEEINGIEERIK-ELEEKEERLEELKKKLKELEKRLEELE---------ERHELYEEAKAKKEELERLKKRL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 736 KEKgtleqEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLKIHT-------PVSQEERLIFLDS 808
Cdd:PRK03918 382 TGL-----TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGkcpvcgrELTEEHRKELLEE 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 809 IKSKSKDSvwEKEIEILIEENEDLKQQCIQLNEEIEKQRNTF----------SFAEKNFEVNYQELQEEYACLLKVKDDL 878
Cdd:PRK03918 457 YTAELKRI--EKELKEIEEKERKLRKELRELEKVLKKESELIklkelaeqlkELEEKLKKYNLEELEKKAEEYEKLKEKL 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 879 edskNKQELEYKSKLKALNEELHLQRINPTTVKMKSSVFDEDKTFVAETLEMGEVVEKDTTELMEKLEVTKREKLELS-- 956
Cdd:PRK03918 535 ----IKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKda 610
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22538393 957 -QRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRELEIIINHNRAENVQSCDTQVSSLLDGV 1023
Cdd:PRK03918 611 eKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGL 678
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2190-2542 |
8.84e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.94 E-value: 8.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2190 IDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQL---EIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQ 2266
Cdd:TIGR04523 28 ANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLnkdEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2267 DQHVLFGKFAQIIQeKEVEIDQLNEQVTKLQQQLK-----ITTDNKVIEEKNELIRDLETQIECLmsdqECVKRNREEEI 2341
Cdd:TIGR04523 108 INSEIKNDKEQKNK-LEVELNKLEKQKKENKKNIDkflteIKKKEKELEKLNNKYNDLKKQKEEL----ENELNLLEKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2342 EQLNEVIEKLQQELANIGQKTSmNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQE 2421
Cdd:TIGR04523 183 LNIQKNIDKIKNKLLKLELLLS-NLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDE 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2422 LFSLKREREsvEKIQSIPENsvNVAIDHLSKDKPELEVVLTEdaLKSLENQTY---FKSFEENGKGSIINLETRLLQLES 2498
Cdd:TIGR04523 262 QNKIKKQLS--EKQKELEQN--NKKIKELEKQLNQLKSEISD--LNNQKEQDWnkeLKSELKNQEKKLEEIQNQISQNNK 335
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 22538393 2499 TVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEK 2542
Cdd:TIGR04523 336 IISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKEN 379
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
330-987 |
1.16e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.56 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 330 IIEELNTKIIEEEKKTLELK-------DKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVE 402
Cdd:TIGR04523 27 IANKQDTEEKQLEKKLKTIKnelknkeKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLS 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 403 ELqkrnhkDSQFETDIVQRMEQETQ-RKLEQLRAELDEmygqQIVQMKQELIRQHmAQMEEMKTRHKgEMENALRSYsni 481
Cdd:TIGR04523 107 KI------NSEIKNDKEQKNKLEVElNKLEKQKKENKK----NIDKFLTEIKKKE-KELEKLNNKYN-DLKKQKEEL--- 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 482 tvnEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLI---LEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKL 558
Cdd:TIGR04523 172 ---ENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLkkkIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEI 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 559 NEAHKSLSTVEDLKAEIVSaSESRKELELKH--------EAEVTNYKIKLEMLEKEKNAVLDRMA----ESQEAELERLR 626
Cdd:TIGR04523 249 SNTQTQLNQLKDEQNKIKK-QLSEKQKELEQnnkkikelEKQLNQLKSEISDLNNQKEQDWNKELkselKNQEKKLEEIQ 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 627 TQLLFShEEELSKLKEDLEiehriNIEKLKDNLGIHyKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLkdlq 706
Cdd:TIGR04523 328 NQISQN-NKIISQLNEQIS-----QLKKELTNSESE-NSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDL---- 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 707 qslvNSKSEEMTLQINELQKEIEILrqeEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKT 786
Cdd:TIGR04523 397 ----ESKIQNQEKLNQQKDEQIKKL---QQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQ 469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 787 LEDmlkihtpvsqeerliFLDSIKSkskdsvwekeieilieENEDLKQQCIQLNEEiEKQRNTFSFAEKNFEVNYQELQE 866
Cdd:TIGR04523 470 LKV---------------LSRSINK----------------IKQNLEQKQKELKSK-EKELKKLNEEKKELEEKVKDLTK 517
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 867 EYACLLKVKDDLEDSKNKQEleykSKLKALNEELHLQRINPTTVKMKSSVFDEDKTFVaETLEMGEVVEKDTTELMEKLE 946
Cdd:TIGR04523 518 KISSLKEKIEKLESEKKEKE----SKISDLEDELNKDDFELKKENLEKEIDEKNKEIE-ELKQTQKSLKKKQEEKQELID 592
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 22538393 947 VTKREKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEK 987
Cdd:TIGR04523 593 QKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSII 633
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
191-407 |
1.28e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 191 QQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQI 270
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 271 LTHQQQLEEQdhlLEDYQKKKEDFTMQISFLQEKIK--VYEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLEL 348
Cdd:COG4942 100 EAQKEELAEL---LRALYRLGRQPPLALLLSPEDFLdaVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 22538393 349 KDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKR 407
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2039-2424 |
1.29e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2039 ELEQEKNTELMDLRQQNQALEKQLEKMRKfLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQ----L 2114
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENRLDELSQELSD-ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSelkeL 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2115 ANHLKEKTDKCSELLLSKEQLQRD-----IQERNEEIEKLEFRVRELEQALLVEDRKHFGAVEAKPELSLEVQ-LQAERD 2188
Cdd:TIGR02169 764 EARIEELEEDLHKLEEALNDLEARlshsrIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQeLQEQRI 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2189 AIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEiqkkestTRLQELEQEnklfKDDMEKLGLAIKESdamstqdq 2268
Cdd:TIGR02169 844 DLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE-------SRLGDLKKE----RDELEAQLRELERK-------- 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2269 hvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQLKITTDNkvIEEKNELIRDLETQIECLMSdqecvkrnreeeIEQLNEVI 2348
Cdd:TIGR02169 905 ----------IEELEAQIEKKRKRLSELKAKLEALEEE--LSEIEDPKGEDEEIPEEELS------------LEDVQAEL 960
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2349 EKLQQELANIGQkTSMNAHSLSEEA----DSLKHQLDVVIAEKLALEQQVETANEEmtfMKNVLKETNFKMNQLTQELFS 2424
Cdd:TIGR02169 961 QRVEEEIRALEP-VNMLAIQEYEEVlkrlDELKEKRAKLEEERKAILERIEEYEKK---KREVFMEAFEAINENFNEIFA 1036
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1991-2393 |
1.40e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1991 EQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKN-----TELMDLRQQNQALEKQLEKM 2065
Cdd:COG4717 72 ELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQllplyQELEALEAELAELPERLEEL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2066 RKFLDEQAiDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQtrEVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEE 2145
Cdd:COG4717 152 EERLEELR-ELEEELEELEAELAELQEELEELLEQLSLATEE--ELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2146 IEKLEFRVRELEQ------------------ALLVEDRKHFGAVEAKPELSLEVQ--LQAERDAIDRKEKEITNLEEQLE 2205
Cdd:COG4717 229 LEQLENELEAAALeerlkearlllliaaallALLGLGGSLLSLILTIAGVLFLVLglLALLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2206 QFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESdamstqDQHVLFGKFAQIIQEKEVE 2285
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL------QLEELEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2286 -IDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLMSDQECVKR--NREEEIEQLNEVIEKLQQELANIGQKt 2362
Cdd:COG4717 383 dEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEEleELEEELEELEEELEELREELAELEAE- 461
|
410 420 430
....*....|....*....|....*....|.
gi 22538393 2363 sMNAHSLSEEADSLKHQLDVVIAEKLALEQQ 2393
Cdd:COG4717 462 -LEQLEEDGELAELLQELEELKAELRELAEE 491
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
214-629 |
1.50e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 214 LQQARREKDETMREFLELTEQSQKLQIQFQQLQASEtlrnsTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKED 293
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEELEAEL-----EELREELEKLEKLLQLLPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 294 FTMQISFLQEKIKvyEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLE-LKDKLTTADKLLGELQEQIVQKNQE 372
Cdd:COG4717 151 LEERLEELRELEE--ELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEeLQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 373 IKNMKLELTNSKQKERQSSEEIKQL-MGTVEELQKRNHKDSQFETDI----------VQRMEQETQRKLEQLRAELDEmy 441
Cdd:COG4717 229 LEQLENELEAAALEERLKEARLLLLiAAALLALLGLGGSLLSLILTIagvlflvlglLALLFLLLAREKASLGKEAEE-- 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 442 gqqiVQMKQELIRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAINELN--IKLQDTNSQKEKLKEELGL- 518
Cdd:COG4717 307 ----LQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEeeLQLEELEQEIAALLAEAGVe 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 519 ---ILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEahkslstvEDLKAEIVSASESRKELELKHE---AE 592
Cdd:COG4717 383 deeELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE--------EELEEELEELEEELEELEEELEelrEE 454
|
410 420 430
....*....|....*....|....*....|....*..
gi 22538393 593 VTNYKIKLEMLEKeknavlDRMAESQEAELERLRTQL 629
Cdd:COG4717 455 LAELEAELEQLEE------DGELAELLQELEELKAEL 485
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
505-792 |
1.51e-05 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 51.01 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 505 TNSQKEKLKEELGLILEE---KCALQRQLEDLVEELSFSREQIQRARQTIAEQESKL-NEAHKSLSTV---EDLKAEI-- 575
Cdd:PLN03229 460 LNEMIEKLKKEIDLEYTEaviAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLkDEFNKRLSRApnyLSLKYKLdm 539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 576 -VSASESRKELELKHEAEvtnyKIKLEMLEKEKnAVLDRmaESQEAELERLRTQLlfsHEEELSKLkEDLEIEHRINIEK 654
Cdd:PLN03229 540 lNEFSRAKALSEKKSKAE----KLKAEINKKFK-EVMDR--PEIKEKMEALKAEV---ASSGASSG-DELDDDLKEKVEK 608
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 655 LKDNLgihykqqidglQNEMSQKIETMQFEKDNLITKQNQLILEI------SKLKDLQQSlVNSKSEEMtLQINELQKEI 728
Cdd:PLN03229 609 MKKEI-----------ELELAGVLKSMGLEVIGVTKKNKDTAEQTpppnlqEKIESLNEE-INKKIERV-IRSSDLKSKI 675
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 729 EILRQEeKEKGTLEQEVQELQlKTELLEKQMKEK------ENDLQEKFAQLEAENSILKDEKKTLEDMLK 792
Cdd:PLN03229 676 ELLKLE-VAKASKTPDVTEKE-KIEALEQQIKQKiaealnSSELKEKFEELEAELAAARETAAESNGSLK 743
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1929-2436 |
1.60e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1929 DEKTLFERQIQEKTDIIDRLEQELLCASNRLQeleaEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEV 2008
Cdd:PRK03918 200 KELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2009 QCQAEKVRDDLQKQVKALE-IDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKfLDEQAIDREHERDVFQQEI 2087
Cdd:PRK03918 276 EELEEKVKELKELKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEE-KEERLEELKKKLKELEKRL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2088 QKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELL-LSKEQLQRDIQERNEEIEKLEFRVRELEQAllVEDRK 2166
Cdd:PRK03918 355 EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELeKAKEEIEEEISKITARIGELKKEIKELKKA--IEELK 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2167 hfGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTR--LQELEQ-EN 2243
Cdd:PRK03918 433 --KAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKelAEQLKElEE 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2244 KLFKDDMEKLGLAIKE-----SDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKiTTDNKVIEEKNELIRD 2318
Cdd:PRK03918 511 KLKKYNLEELEKKAEEyeklkEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELA-ELLKELEELGFESVEE 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2319 LETQIECL---------MSDQECVKRNREEEIEQLNEVIEKLQQELAnigqKTSMNAHSLSEEADSLKHQLDV-----VI 2384
Cdd:PRK03918 590 LEERLKELepfyneyleLKDAEKELEREEKELKKLEEELDKAFEELA----ETEKRLEELRKELEELEKKYSEeeyeeLR 665
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 22538393 2385 AEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEKIQ 2436
Cdd:PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLE 717
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
2011-2300 |
1.61e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.49 E-value: 1.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2011 QAEKVrDDLQKQVKALEIDVEEQVsrfiELEQEKNTELMDLRQQNQALEKQLEKMRKFLD--EQAIDREHERDV-FQQEI 2087
Cdd:COG3096 345 QQEKI-ERYQEDLEELTERLEEQE----EVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAdyQQALDVQQTRAIqYQQAV 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2088 QKLE--QQLKVVP------------RFQPISEHQTREVEQLANHL------KEKTDKCSELLLS--------------KE 2133
Cdd:COG3096 420 QALEkaRALCGLPdltpenaedylaAFRAKEQQATEEVLELEQKLsvadaaRRQFEKAYELVCKiageversqawqtaRE 499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2134 QLQ--RDIQERNEEIEKLEFRVRELEQALlvedRKHFGAVEAKPELSleVQLQAERDAIDrkekEITNLEEQLEQFREEL 2211
Cdd:COG3096 500 LLRryRSQQALAQRLQQLRAQLAELEQRL----RQQQNAERLLEEFC--QRIGQQLDAAE----ELEELLAELEAQLEEL 569
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2212 ENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKL-------GLAIKESDAMSTQDQHVLfgkfaqiIQEKEV 2284
Cdd:COG3096 570 EEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALerlreqsGEALADSQEVTAAMQQLL-------EREREA 642
|
330
....*....|....*...
gi 22538393 2285 EI--DQLNEQVTKLQQQL 2300
Cdd:COG3096 643 TVerDELAARKQALESQI 660
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2011-2242 |
1.80e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.79 E-value: 1.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2011 QAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNteLMDLRQQNQALEKQLEKmrkfLDEQAIDREHERDVFQQEIQKL 2090
Cdd:COG3206 172 EARKALEFLEEQLPELRKELEEAEAALEEFRQKNG--LVDLSEEAKLLLQQLSE----LESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2091 EQQLKVVPRFQPiSEHQTREVEQLANHLkektdkcSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVEDRKhfga 2170
Cdd:COG3206 246 RAQLGSGPDALP-ELLQSPVIQQLRAQL-------AELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQR---- 313
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22538393 2171 veakpelsLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTT---RLQELEQE 2242
Cdd:COG3206 314 --------ILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESllqRLEEARLA 380
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
267-971 |
2.06e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.82 E-value: 2.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 267 KQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQD-KKVENSNKEEIQEKETIIEELNTKIIEEEKKT 345
Cdd:TIGR00606 192 RQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREiVKSYENELDPLKNRLKEIEHNLSKIMKLDNEI 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 346 LELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEE-----IKQLMGTVEELQKRNHKDSQFETDI-- 418
Cdd:TIGR00606 272 KALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERelvdcQRELEKLNKERRLLNQEKTELLVEQgr 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 419 ---------VQRMEQETQRKLEQLRAELDEM----YGQQIVQMKQELIRQHMAQMEEMKTRHKGEMENALR-SYSNITVN 484
Cdd:TIGR00606 352 lqlqadrhqEHIRARDSLIQSLATRLELDGFergpFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERlKQEQADEI 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 485 EDQIKLMNVAINELNIKLQDTNSQKEKLKEEL-------GLILEEKCALQRQLEDL-------------VEELSFSREQ- 543
Cdd:TIGR00606 432 RDEKKGLGRTIELKKEILEKKQEELKFVIKELqqlegssDRILELDQELRKAERELskaeknsltetlkKEVKSLQNEKa 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 544 -IQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEVT-------NYKI---KLEMLEKEKNAVLD 612
Cdd:TIGR00606 512 dLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTsllgyfpNKKQledWLHSKSKEINQTRD 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 613 RMAESQE--AELERLRTQL---LFSHEEELSKLKEDL-----EIEHRINIEKLKDNLGIHYKQQ--IDGLQNEMSQKIET 680
Cdd:TIGR00606 592 RLAKLNKelASLEQNKNHInneLESKEEQLSSYEDKLfdvcgSQDEESDLERLKEEIEKSSKQRamLAGATAVYSQFITQ 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 681 MQFEKDNL------ITKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEIL----RQEEKEKGTLEQEVQELQL 750
Cdd:TIGR00606 672 LTDENQSCcpvcqrVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMlglaPGRQSIIDLKEKEIPELRN 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 751 KTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDmlkihtpvsqeerLIFLDSIKSKSKDSVWEKEIEILIEENE 830
Cdd:TIGR00606 752 KLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTD-------------VTIMERFQMELKDVERKIAQQAAKLQGS 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 831 DLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEYacllKVKDDLEDSKNKQELEYKSKLKALNEELHLQRINPTTV 910
Cdd:TIGR00606 819 DLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQ----EQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELS 894
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22538393 911 KMKSSVFDEDKTFVAETLEMGEVVEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQKHG 971
Cdd:TIGR00606 895 TEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHG 955
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1997-2260 |
2.26e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 50.31 E-value: 2.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1997 ETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLrqqnqalEKQLEKMrkfldeqaidr 2076
Cdd:PRK05771 44 RLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKI-------EKEIKEL----------- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2077 EHERDVFQQEIQKLEQQLKVVPRFQPISEhqtreveQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVREL 2156
Cdd:PRK05771 106 EEEISELENEIKELEQEIERLEPWGNFDL-------DLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGY 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2157 EQALLVEDRKHFGAVE---AKPELSlEVQLQAER---DAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQ----LE 2226
Cdd:PRK05771 179 VYVVVVVLKELSDEVEeelKKLGFE-RLELEEEGtpsELIREIKEELEEIEKERESLLEELKELAKKYLEELLAlyeyLE 257
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 22538393 2227 IQKKESTTRLQELEqENKLF-------KDDMEKLGLAIKES 2260
Cdd:PRK05771 258 IELERAEALSKFLK-TDKTFaiegwvpEDRVKKLKELIDKA 297
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
143-782 |
2.34e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 2.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 143 DSYSEQGAQDSPTHLEMMESELAGKQHEIEELNRELEEMRvtygteglQQLQEFEAAIKQRDGIITQLTA--------NL 214
Cdd:COG4913 269 ERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLE--------AELERLEARLDALREELDELEAqirgnggdRL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 215 QQARREKDETMREFLELTEQSQKLQIQFQQLQASETLrnsthssTAADLLQAKQQILTHQQQLEEQDHLLEDYQ----KK 290
Cdd:COG4913 341 EQLEREIERLERELEERERRRARLEALLAALGLPLPA-------SAEEFAALRAEAAALLEALEEELEALEEALaeaeAA 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 291 KEDFTMQISFLQEKIKVYEmeqdKKVENSNKEEIQEKETIIEELNtkIIEEEKK----TLELKDK----LTTADKLLGEL 362
Cdd:COG4913 414 LRDLRRELRELEAEIASLE----RRKSNIPARLLALRDALAEALG--LDEAELPfvgeLIEVRPEeerwRGAIERVLGGF 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 363 -------QEQIVQKNQEIKNMKLeltnskqKERQSSEEIKQlmGTVEELQKRNHKDSqfetdIVQRMEQETQRKLEQLRA 435
Cdd:COG4913 488 altllvpPEHYAAALRWVNRLHL-------RGRLVYERVRT--GLPDPERPRLDPDS-----LAGKLDFKPHPFRAWLEA 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 436 ELDEMYGQQIVQMKQELIRQHMA-----QMEEMKTRHKGEMENALRSYSNI-TVNEDQIKLMNVAINELNIKLQDTNSQK 509
Cdd:COG4913 554 ELGRRFDYVCVDSPEELRRHPRAitragQVKGNGTRHEKDDRRRIRSRYVLgFDNRAKLAALEAELAELEEELAEAEERL 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 510 EKLKEELGLILEEKCALQRqledlVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIvsasesrKELELKH 589
Cdd:COG4913 634 EALEAELDALQERREALQR-----LAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALEEQL-------EELEAEL 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 590 EAevtnykiklemLEKEKNAVLDRMAEsQEAELERLRTQLLfSHEEELSKLKEDLEIEHRINIEKLKDNLGI--HYKQQI 667
Cdd:COG4913 702 EE-----------LEEELDELKGEIGR-LEKELEQAEEELD-ELQDRLEAAEDLARLELRALLEERFAAALGdaVERELR 768
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 668 DGLQNEMSQKIETMQFEKDNLITKQNQLILE-ISKLKDLQQSLvnsKSEEMTLQINELQKEIEILRQEEKEKGTLEQevQ 746
Cdd:COG4913 769 ENLEERIDALRARLNRAEEELERAMRAFNREwPAETADLDADL---ESLPEYLALLDRLEEDGLPEYEERFKELLNE--N 843
|
650 660 670
....*....|....*....|....*....|....*.
gi 22538393 747 ELQLKTELLEKqMKEKENDLQEKFAQLeaeNSILKD 782
Cdd:COG4913 844 SIEFVADLLSK-LRRAIREIKERIDPL---NDSLKR 875
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
355-581 |
2.48e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 355 ADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRnHKDSQFETDIVQRMEQETQRKLEQLR 434
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR-IRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 435 AELDEmygqqivqmKQELIRQHMAQMEEMKTRHKGEM----ENALRSYSNITV-------NEDQIKLMNVAINELNIKLQ 503
Cdd:COG4942 97 AELEA---------QKEELAELLRALYRLGRQPPLALllspEDFLDAVRRLQYlkylapaRREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22538393 504 DTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASES 581
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
541-900 |
2.64e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 2.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 541 REQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELElkhEAEVTNYKIKLEMLEKEKNAVLDRMAEsQEA 620
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKR---EYEGYELLKEKEALERQKEAIERQLAS-LEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 621 ELERLrTQLLFSHEEELSKLKEDLEIEHRiNIEKLKDNLGIHYKQQIDGLQNEMSQ---KIETMQFEKDNLITKQNQLIL 697
Cdd:TIGR02169 252 ELEKL-TEEISELEKRLEEIEQLLEELNK-KIKDLGEEEQLRVKEKIGELEAEIASlerSIAEKERELEDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 698 EISKLKdlqqslvnskseemtLQINELQKEIEilrQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLeaen 777
Cdd:TIGR02169 330 EIDKLL---------------AEIEELEREIE---EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL---- 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 778 silKDEKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRntfsfaeknf 857
Cdd:TIGR02169 388 ---KDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE---------- 454
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 22538393 858 evnyQELQEEYACLLKVKDDLEDSKNKQElEYKSKLKALNEEL 900
Cdd:TIGR02169 455 ----WKLEQLAADLSKYEQELYDLKEEYD-RVEKELSKLQREL 492
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1576-2095 |
2.90e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 2.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1576 ASRQLMLNEEQLEDMRQELVRQYQEHQQATELLRQAHMR------QMERQREDQEQLQEEIKRLNRQLAQRSSiDNENLV 1649
Cdd:COG1196 258 LEAELAELEAELEELRLELEELELELEEAQAEEYELLAElarleqDIARLEERRRELEERLEELEEELAELEE-ELEELE 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1650 SERERVLLEELEALKQLSLAgREKLCCELRNSSTQTQNGNENQGEVEEQTFKEKELDRKPEDvppeiLSNERYALQKANN 1729
Cdd:COG1196 337 EELEELEEELEEAEEELEEA-EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE-----LAAQLEELEEAEE 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1730 RLLKILLEVVKTTAAVEETIGRHVLGILDRSSKSQSSASLIWRSEAEASVKSCVHEEHTRVTDESIPSYSGSDMPRNDin 1809
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE-- 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1810 mwsKVTEEGTELSQRLVRSGFAGTEIDPENEELMLNISSRLQ------AAVEKLLEAISETSSQLEHAKVTQTELMRESF 1883
Cdd:COG1196 489 ---AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAvligveAAYEAALEAALAAALQNIVVEDDEVAAAAIEY 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1884 RQKQEATESLKCQEELRERLHEESRAREQLAVELskAEGVIDGYADEKTLFERQIQEkTDIIDRLEQELLCASNRLQELE 1963
Cdd:COG1196 566 LKAAKAGRATFLPLDKIRARAALAAALARGAIGA--AVDLVASDLREADARYYVLGD-TLLGRTLVAARLEAALRRAVTL 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1964 AEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQE 2043
Cdd:COG1196 643 AGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 22538393 2044 KNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHE---RDVFQQEIQKLEQQLK 2095
Cdd:COG1196 723 EEALEEQLEAEREELLEELLEEEELLEEEALEELPEppdLEELERELERLEREIE 777
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
309-1007 |
3.03e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 3.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 309 EMEQDKKVENSNKEEIQEKETIIEE---LNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKnmKLELTNSKQ 385
Cdd:PTZ00121 1078 DFDFDAKEDNRADEATEEAFGKAEEakkTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEAR--KAEDAKRVE 1155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 386 KERQSSEEIKQLMGTVEELQKRNHKDSQFETdiVQRMEQ----ETQRKLEQLRAELDEMYGQQIVQMKQELIRQHMAQME 461
Cdd:PTZ00121 1156 IARKAEDARKAEEARKAEDAKKAEAARKAEE--VRKAEElrkaEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAE 1233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 462 EMKTRhkgemENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQ-RQLEDL--VEELS 538
Cdd:PTZ00121 1234 EAKKD-----AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEaKKAEEKkkADEAK 1308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 539 FSREQIQRARQTI--AEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKH-EAEVTNYKIKLEMLEKEKNAVLDRMA 615
Cdd:PTZ00121 1309 KKAEEAKKADEAKkkAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAaEEKAEAAEKKKEEAKKKADAAKKKAE 1388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 616 ESQEAELERLRTQLLFSHEEELSKLKEDLEI--EHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQfEKDNLITKQN 693
Cdd:PTZ00121 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKKadEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK-KAEEAKKKAE 1467
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 694 qlilEISKLKDLQQSLVNS-KSEEMTLQINELQKEIEILRQ--EEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKF 770
Cdd:PTZ00121 1468 ----EAKKADEAKKKAEEAkKADEAKKKAEEAKKKADEAKKaaEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAE 1543
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 771 AQLEAENSILKDEKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQrntf 850
Cdd:PTZ00121 1544 EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAK---- 1619
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 851 sfaEKNFEVNYQELQEEYACLLKVKDDLEDSKNKQELEYKSKLKALNEELHLQRINPTTVKMKSSVFDEDKTFVAETLEM 930
Cdd:PTZ00121 1620 ---IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK 1696
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 931 GEVVEKDTTELMEKL--EVTKREKLELSQRLSDL-SEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRELEIIINHNRAE 1007
Cdd:PTZ00121 1697 EAEEAKKAEELKKKEaeEKKKAEELKKAEEENKIkAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
512-803 |
3.14e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 49.93 E-value: 3.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 512 LKEELGLILEekcALQR----QLEDLVEELSfsREQIQRARqtiaeqeSKLNEAHKSLSTVEDLKAEIVSASESRKELEL 587
Cdd:PRK05771 14 LKSYKDEVLE---ALHElgvvHIEDLKEELS--NERLRKLR-------SLLTKLSEALDKLRSYLPKLNPLREEKKKVSV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 588 KHEAEVtnykikLEMLEKEKNAVLDRMaESQEAELERLRTQLlfsheEELSKLKEDLEIEHRINIEkLKDNLGIHYKQQI 667
Cdd:PRK05771 82 KSLEEL------IKDVEEELEKIEKEI-KELEEEISELENEI-----KELEQEIERLEPWGNFDLD-LSLLLGFKYVSVF 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 668 DGlqnemsqKIETMQFEKDNLITKQNQLIlEISKLKDLQQSLVNSKSEEMTLQINELqKEIEILRQEEKEKGTLEQEVQE 747
Cdd:PRK05771 149 VG-------TVPEDKLEELKLESDVENVE-YISTDKGYVYVVVVVLKELSDEVEEEL-KKLGFERLELEEEGTPSELIRE 219
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22538393 748 L-----QLKTEL--LEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLK------IH--TPVSQEERL 803
Cdd:PRK05771 220 IkeeleEIEKEResLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKtdktfaIEgwVPEDRVKKL 290
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
173-429 |
3.42e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 50.12 E-value: 3.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 173 ELNRELEEMRVTYGTEGLQQLQEFEAAIKQRDgiiTQLTANLQQARREKDETMREFLElteQSQKLQIQFQQLQASETLR 252
Cdd:pfam17380 345 ERERELERIRQEERKRELERIRQEEIAMEISR---MRELERLQMERQQKNERVRQELE---AARKVKILEEERQRKIQQQ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 253 NSTHSSTAADLLQAKQQILthQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKikvyemEQDKKVENSNKEEIQEKETIIE 332
Cdd:pfam17380 419 KVEMEQIRAEQEEARQREV--RRLEEERAREMERVRLEEQERQQQVERLRQQ------EEERKRKKLELEKEKRDRKRAE 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 333 ELNTKIIEEE-----KKTLELKDKLTTADKLLGELQEQIVQKNQEiknMKLELTNSKQKERQSSEEIKQLMGTVEELQKR 407
Cdd:pfam17380 491 EQRRKILEKEleerkQAMIEEERKRKLLEKEMEERQKAIYEEERR---REAEEERRKQQEMEERRRIQEQMRKATEERSR 567
|
250 260
....*....|....*....|..
gi 22538393 408 NHKDSQFETDIVQRMEQETQRK 429
Cdd:pfam17380 568 LEAMEREREMMRQIVESEKARA 589
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
209-807 |
3.73e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 50.08 E-value: 3.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 209 QLTANLQQARREKDETMREFLELTEQSQKlqiQFQQLQASETLRNSthsstAADLLQAKQQILTHQQQLEEQDHL-LEDY 287
Cdd:COG5022 831 KLRETEEVEFSLKAEVLIQKFGRSLKAKK---RFSLLKKETIYLQS-----AQRVELAERQLQELKIDVKSISSLkLVNL 902
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 288 QKKKE--DFTMQIS---FLQEKIKVYEMEQDKKV-ENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGE 361
Cdd:COG5022 903 ELESEiiELKKSLSsdlIENLEFKTELIARLKKLlNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTI 982
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 362 LQEQIVQKNQEIKNMKLELTN-SKQKER--QSSEEIKQLMGTVEELQKRNHKDSQfETDIVQRMeqetqRKLEQLRAELD 438
Cdd:COG5022 983 LVREGNKANSELKNFKKELAElSKQYGAlqESTKQLKELPVEVAELQSASKIISS-ESTELSIL-----KPLQKLKGLLL 1056
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 439 EMYgqqivqmkqeliRQHMAQMEEMKTRHkgemENALRSYSNITVNEDQIKLMNvAINELNIKLQDTNSQKEKLKEE--- 515
Cdd:COG5022 1057 LEN------------NQLQARYKALKLRR----ENSLLDDKQLYQLESTENLLK-TINVKDLEVTNRNLVKPANVLQfiv 1119
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 516 -----LGLILEEK-----------------CALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHK-----SLSTV 568
Cdd:COG5022 1120 aqmikLNLLQEISkflsqlvntlepvfqklSVLQLELDGLFWEANLEALPSPPPFAALSEKRLYQSALYDeksklSSSEV 1199
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 569 EDLKAEIVS-ASESRKELELKHE-----AEVTNYKIKLEMLeKEKNAVLDRMAESQEAELERLRTQLLfSHEEELSKLKE 642
Cdd:COG5022 1200 NDLKNELIAlFSKIFSGWPRGDKlkkliSEGWVPTEYSTSL-KGFNNLNKKFDTPASMSNEKLLSLLN-SIDNLLSSYKL 1277
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 643 DLEIEHRInieklkdnlgihykqqidglQNEMSQKIETMQFekDNLITKQNQLILEISKLKDLQQSLVNSKSEEMtlQIN 722
Cdd:COG5022 1278 EEEVLPAT--------------------INSLLQYINVGLF--NALRTKASSLRWKSATEVNYNSEELDDWCREF--EIS 1333
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 723 ELQKEIEILRQEEKEKGTLE-------------QEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLED 789
Cdd:COG5022 1334 DVDEELEELIQAVKVLQLLKddlnkldelldacYSLNPAEIQNLKSRYDPADKENNLPKEILKKIEALLIKQELQLSLEG 1413
|
650 660
....*....|....*....|..
gi 22538393 790 MLKIHTPVSQ----EERLIFLD 807
Cdd:COG5022 1414 KDETEVHLSEifseEKSLISLD 1435
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
2132-2245 |
4.19e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 49.39 E-value: 4.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2132 KEQLQRDIQERNEEIEKLEFRVRELEQALlvedRKHFGAVEAKpelslEVQLQAERDAIDRKEKEITNLEEQLEQFREEL 2211
Cdd:PRK12704 70 RNEFEKELRERRNELQKLEKRLLQKEENL----DRKLELLEKR-----EEELEKKEKELEQKQQELEKKEEELEELIEEQ 140
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 22538393 2212 ENKNEEVQQL------HMQLEIQKKESTT----RLQELEQENKL 2245
Cdd:PRK12704 141 LQELERISGLtaeeakEILLEKVEEEARHeaavLIKEIEEEAKE 184
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
3119-3436 |
4.53e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 4.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3119 QQKQSQMLEMQVELSSMKDRATELQEQLSSekmvvAELKSELAQTKLELETTLKAQHKHL---------KELEAFRLEVK 3189
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKS-----LERQAEKAERYKELKAELRELELALlvlrleelrEELEELQEELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3190 DKTDEVHLLNDTLASEQKKSRELqwalEKEKAKLGRSEERDKEELEDLKF---SLESQKQRNLQLNLLLEQQKQLLNESQ 3266
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEEL----RLEVSELEEEIEELQKELYALANeisRLEQQKQILRERLANLERQLEELEAQL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3267 QKIESQRMLYDAQLSEEQGRNLELQVLLESEKVRIREMSSTL----DRERELHAQLQSSdgtgqsrpplpsEDLLKELQK 3342
Cdd:TIGR02168 326 EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELeeleSRLEELEEQLETL------------RSKVAQLEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3343 QLEEKHSRIVELlnETEKYKLDSLQTRQQMEK---DRQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEEKRQQVY 3419
Cdd:TIGR02168 394 QIASLNNEIERL--EARLERLEDRRERLQQEIeelLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471
|
330
....*....|....*..
gi 22538393 3420 KLDLEGQRLQGIMQEFQ 3436
Cdd:TIGR02168 472 EAEQALDAAERELAQLQ 488
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
505-769 |
5.22e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.35 E-value: 5.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 505 TNSQKEKLKEELGLILEEKCALQRQLEDlveelSFSREQIQRARQtiaEQESKLNEAHKSLSTVEdlkaeivsaSESRKE 584
Cdd:pfam17380 264 TMTENEFLNQLLHIVQHQKAVSERQQQE-----KFEKMEQERLRQ---EKEEKAREVERRRKLEE---------AEKARQ 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 585 LELKHEAEVTNYKIKLEMlekEKNAVLDRM-AESQEAELERLRTQLLFSHEEELSKLkEDLEIEHRINIEKLKDNLGIHY 663
Cdd:pfam17380 327 AEMDRQAAIYAEQERMAM---ERERELERIrQEERKRELERIRQEEIAMEISRMREL-ERLQMERQQKNERVRQELEAAR 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 664 KQQIdgLQNEMSQKIETMQFEKDNLITKQ-NQLILEISKLKDLQQSlvnsKSEEMTLQINELQKEIEILRQEEKE----K 738
Cdd:pfam17380 403 KVKI--LEEERQRKIQQQKVEMEQIRAEQeEARQREVRRLEEERAR----EMERVRLEEQERQQQVERLRQQEEErkrkK 476
|
250 260 270
....*....|....*....|....*....|....*
gi 22538393 739 GTLEQEVQELQLKTEL----LEKQMKEKENDLQEK 769
Cdd:pfam17380 477 LELEKEKRDRKRAEEQrrkiLEKELEERKQAMIEE 511
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2017-2212 |
6.01e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 6.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2017 DDLQKQVKALE------IDVEEQVSRFIELEqEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDR-EHERDVFQQEIQK 2089
Cdd:COG4913 228 DALVEHFDDLErahealEDAREQIELLEPIR-ELAERYAAARERLAELEYLRAALRLWFAQRRLELlEAELEELRAELAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2090 LEQQLkvvprfqpisehqtREVEQLANHLKEKTDKCSELLLS-----KEQLQRDIQERNEEIEKLEFRVRELEQAL---- 2160
Cdd:COG4913 307 LEAEL--------------ERLEARLDALREELDELEAQIRGnggdrLEQLEREIERLERELEERERRRARLEALLaalg 372
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22538393 2161 --LVEDRKHFGA--------VEAKPELS---------LEVQLQAERDAIDRKEKEITNLE-------EQLEQFREELE 2212
Cdd:COG4913 373 lpLPASAEEFAAlraeaaalLEALEEELealeealaeAEAALRDLRRELRELEAEIASLErrksnipARLLALRDALA 450
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
356-788 |
7.00e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 49.31 E-value: 7.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 356 DKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKR--NHKDSQFETDIVQRMEQeTQRKLEQL 433
Cdd:COG5022 809 RKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRfsLLKKETIYLQSAQRVEL-AERQLQEL 887
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 434 RAELDEM-----YGQQIVQMKQELIRQHMAQME---EMKTRHKGEMENALRsysNITVNEDQIKlmNVAINELNIKLQDT 505
Cdd:COG5022 888 KIDVKSIsslklVNLELESEIIELKKSLSSDLIenlEFKTELIARLKKLLN---NIDLEEGPSI--EYVKLPELNKLHEV 962
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 506 NSQKEKLKEELGLILEekcalqrQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVS-ASESRKE 584
Cdd:COG5022 963 ESKLKETSEEYEDLLK-------KSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAElQSASKII 1035
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 585 LElkheaEVTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDNlgihyk 664
Cdd:COG5022 1036 SS-----ESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVT------ 1104
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 665 qQIDGLQNEMSQKIETMQFEKDNLITKQNQLILeiSKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQE 744
Cdd:COG5022 1105 -NRNLVKPANVLQFIVAQMIKLNLLQEISKFLS--QLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEKR 1181
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 22538393 745 ---VQELQLKTELLEKQMKEKENDLQEKFaQLEAENSILKDEKKTLE 788
Cdd:COG5022 1182 lyqSALYDEKSKLSSSEVNDLKNELIALF-SKIFSGWPRGDKLKKLI 1227
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
233-628 |
7.15e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 48.97 E-value: 7.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 233 EQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEME- 311
Cdd:pfam05557 48 DRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELEl 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 312 --QDKKVENSNkEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQiVQKNQEIKNMKLELTNSKQKER- 388
Cdd:pfam05557 128 qsTNSELEELQ-ERLDLLKAKASEAEQLRQNLEKQQSSLAEAEQRIKELEFEIQSQ-EQDSEIVKNSKSELARIPELEKe 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 389 --QSSEEIKQLMGTVE--ELQKRNHKDSQFETDIVQRMEQET---QRKLEQLRAELDEMygQQIVQMKQELIRQHMAQME 461
Cdd:pfam05557 206 leRLREHNKHLNENIEnkLLLKEEVEDLKRKLEREEKYREEAatlELEKEKLEQELQSW--VKLAQDTGLNLRSPEDLSR 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 462 EMKTRHKGEMENALRSYS----------NITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLE 531
Cdd:pfam05557 284 RIEQLQQREIVLKEENSSltssarqlekARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILE 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 532 DLVEELSFSR-------------EQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEA-----EV 593
Cdd:pfam05557 364 SYDKELTMSNyspqllerieeaeDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPsyskeEV 443
|
410 420 430
....*....|....*....|....*....|....*
gi 22538393 594 TNYKIKLEMLEKEkNAVLDRMAESQEAELERLRTQ 628
Cdd:pfam05557 444 DSLRRKLETLELE-RQRLREQKNELEMELERRCLQ 477
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1583-2354 |
7.26e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 7.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1583 NEEQLEDMRQELVRQyqehqqatellrqahMRQMERQREDQEQ---LQEEIKRLNRQLAQRssidnenlvseRERVLLEE 1659
Cdd:COG1196 187 NLERLEDILGELERQ---------------LEPLERQAEKAERyreLKEELKELEAELLLL-----------KLRELEAE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1660 LEALKQlslagreklccelrnssTQTQNGNENQGEVEEQTFKEKELDRkpedvppeilsnERYALQKANNRLLKILLEVV 1739
Cdd:COG1196 241 LEELEA-----------------ELEELEAELEELEAELAELEAELEE------------LRLELEELELELEEAQAEEY 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1740 KTTAAVEETIGRHVLGILDRSSKSQSSASLIWRSEAEAsvkscvheehtrvtdesipsysgsdmprndinmwskvtEEGT 1819
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELE--------------------------------------EELE 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1820 ELSQRLVRSGFAGTEIDPENEElmlnissrLQAAVEKLLEAISETSSQLEHAKVTQTELMRESFRQKQEATESLKCQEEL 1899
Cdd:COG1196 334 ELEEELEELEEELEEAEEELEE--------AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1900 RERLHEESRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLcasnRLQELEAEQQQIQEERELLSRQ 1979
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE----ALLELLAELLEEAALLEAALAE 481
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1980 KEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEqekntELMDLRQQNQALE 2059
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAA-----LAAALQNIVVEDD 556
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2060 KQLEKMRKFLDEQAIdrehERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDI 2139
Cdd:COG1196 557 EVAAAAIEYLKAAKA----GRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL 632
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2140 QERNEEIEKLEFRVRE--LEQALLVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEE 2217
Cdd:COG1196 633 EAALRRAVTLAGRLREvtLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEA 712
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2218 VQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDamstqdqhvlfgkfaqiiqEKEVEIDQLNEQVTKLQ 2297
Cdd:COG1196 713 EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEEL-------------------PEPPDLEELERELERLE 773
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22538393 2298 QQLK----IttDNKVIEEKNEL---IRDLETQIECLmsdqecvkrnrEEEIEQLNEVIEKLQQE 2354
Cdd:COG1196 774 REIEalgpV--NLLAIEEYEELeerYDFLSEQREDL-----------EEARETLEEAIEEIDRE 824
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
148-563 |
9.10e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 9.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 148 QGAQDSPTHLEMMESELAGKQHEIEELNRELEEMRVTYGT-EGLQQLQEFEAAIKQRDGIITQLTANLQQARREkdetMR 226
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKlEKLLQLLPLYQELEALEAELAELPERLEELEER----LE 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 227 EFLELTEQSQKLQIQFQQLQAS-ETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKI 305
Cdd:COG4717 157 ELRELEEELEELEAELAELQEElEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 306 KVYEMEQdkkvENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQ 385
Cdd:COG4717 237 EAAALEE----RLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPA 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 386 KERQSSEEIKQLMG--------TVEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQQIVQMKQELIRQHM 457
Cdd:COG4717 313 LEELEEEELEELLAalglppdlSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALE 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 458 AQMEEMKTRHK-GEMENALRSYSNitvnEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEE 536
Cdd:COG4717 393 QAEEYQELKEElEELEEQLEELLG----ELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
410 420
....*....|....*....|....*..
gi 22538393 537 lsfsrEQIQRARQTIAEQESKLNEAHK 563
Cdd:COG4717 469 -----GELAELLQELEELKAELRELAE 490
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
2025-2302 |
9.18e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.80 E-value: 9.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2025 ALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLD--EQAIDREH--ERDVFQQEIQKLEQQLK---VV 2097
Cdd:PRK04863 830 AFEADPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSalNRLLPRLNllADETLADRVEEIREQLDeaeEA 909
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2098 PRFqpISEHQTR--EVEQLANHLKEKTDKCselllskEQLQRDIQERNEEIEKLEFRVRELEQalLVEDRKHFGAVEAKP 2175
Cdd:PRK04863 910 KRF--VQQHGNAlaQLEPIVSVLQSDPEQF-------EQLKQDYQQAQQTQRDAKQQAFALTE--VVQRRAHFSYEDAAE 978
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2176 ELSLEVQLQaerDAIDRKEKEitnLEEQLEQFREELENKNEEVQQLHmQLEIQKKESTTRLQELEQEnklFKDDMEKLGL 2255
Cdd:PRK04863 979 MLAKNSDLN---EKLRQRLEQ---AEQERTRAREQLRQAQAQLAQYN-QVLASLKSSYDAKRQMLQE---LKQELQDLGV 1048
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 22538393 2256 AI---KESDAMSTQDQ-----HVLFGKFAQI---IQEKEVEIDQLNEQVTKLQQQLKI 2302
Cdd:PRK04863 1049 PAdsgAEERARARRDElharlSANRSRRNQLekqLTFCEAEMDNLTKKLRKLERDYHE 1106
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
454-1198 |
9.26e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 9.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 454 RQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEKLK--EELGLILEEKCA------ 525
Cdd:PTZ00121 1063 KAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKkaEDARKAEEARKAedarka 1142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 526 --LQRQLEDLVEELSFSREQIQRARQT-IAEQESKLNEAHKSLstvedlkaEIVSASESRKELELKHEAEVTNYkiklem 602
Cdd:PTZ00121 1143 eeARKAEDAKRVEIARKAEDARKAEEArKAEDAKKAEAARKAE--------EVRKAEELRKAEDARKAEAARKA------ 1208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 603 lEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEhriNIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQ 682
Cdd:PTZ00121 1209 -EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNE---EIRKFEEARMAHFARRQAAIKAEEARKADELK 1284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 683 FEKdnlitkqnqlilEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKgtleQEVQELQLKTEllEKQMKEK 762
Cdd:PTZ00121 1285 KAE------------EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK----KKADAAKKKAE--EAKKAAE 1346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 763 ENDLQEKFAQLEAENSILK---DEKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSvweKEIEILIEENEDLKQQCIQL 839
Cdd:PTZ00121 1347 AAKAEAEAAADEAEAAEEKaeaAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED---KKKADELKKAAAAKKKADEA 1423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 840 NEEIEKQRNTFSFAEKNFEVNYQElqeeyacllKVKDDLEDSKNKQELEYKSKLKALNEELhlqrinpttvKMKSsvfdE 919
Cdd:PTZ00121 1424 KKKAEEKKKADEAKKKAEEAKKAD---------EAKKKAEEAKKAEEAKKKAEEAKKADEA----------KKKA----E 1480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 920 DKTFVAETLEMGEVVEKDTTELMEKLEVTKR----EKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLR-C 994
Cdd:PTZ00121 1481 EAKKADEAKKKAEEAKKKADEAKKAAEAKKKadeaKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKkA 1560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 995 RELEIIINHNRAENVQSCDTQVSSLLDGVVTMTSRGAEGSVSKVNKSFGEESKIMVEDKVSFENMTVGEESKQEQLILDH 1074
Cdd:PTZ00121 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1075 LPSVTKESSLRATQPSENDKLQKELNVLKSEQN-----DLRLQMEAQRICLSLVY-----STHVDQVREYMENEKDKALC 1144
Cdd:PTZ00121 1641 KEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDkkkaeEAKKAEEDEKKAAEALKkeaeeAKKAEELKKKEAEEKKKAEE 1720
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22538393 1145 SLK---------EELIFAQEEKIKELQKIHQLELQTMKTQETGDEGKPLHLLIGKLQKAVSEE 1198
Cdd:PTZ00121 1721 LKKaeeenkikaEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2200-2435 |
9.41e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 9.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2200 LEEQLEQFREELENK----NEEVQQLHMQLEiqkkESTTRLQELEQENKLFkDDMEKLGLAIKESDAMSTQdqhvlfgkf 2275
Cdd:COG3206 162 LEQNLELRREEARKAleflEEQLPELRKELE----EAEAALEEFRQKNGLV-DLSEEAKLLLQQLSELESQ--------- 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2276 aqiIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLMSD-QECVKRNREE--EIEQLNEVIEKLQ 2352
Cdd:COG3206 228 ---LAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAElAELSARYTPNhpDVIALRAQIAALR 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2353 QELANIGQKTsmnahslseeADSLKHQLDVVIAEKLALEQQVETANEEMTfmknvlketnfKMNQLTQELFSLKRERESV 2432
Cdd:COG3206 305 AQLQQEAQRI----------LASLEAELEALQAREASLQAQLAQLEARLA-----------ELPELEAELRRLEREVEVA 363
|
...
gi 22538393 2433 EKI 2435
Cdd:COG3206 364 REL 366
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
577-792 |
1.07e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 577 SASESRKELElKHEAEVTNYKIKLEMLEKEKNAVLDRMAEsQEAELERLrTQLLFSHEEELSKLKEDLEiEHRINIEKLK 656
Cdd:COG4942 21 AAAEAEAELE-QLQQEIAELEKELAALKKEEKALLKQLAA-LERRIAAL-ARRIRALEQELAALEAELA-ELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 657 dnlgihykQQIDGLQNEMSQKIETMQ----FEKDNLITKQNQLILEISKLKDLQQslVNSKSEEMTLQINELQKEIEILR 732
Cdd:COG4942 97 --------AELEAQKEELAELLRALYrlgrQPPLALLLSPEDFLDAVRRLQYLKY--LAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22538393 733 QE-EKEKGTLEQEVQELQLKTELLEKQMKEKE---NDLQEKFAQLEAENSILKDEKKTLEDMLK 792
Cdd:COG4942 167 AElEAERAELEALLAELEEERAALEALKAERQkllARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
3075-3354 |
1.14e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3075 QKADRRSLLSEIQALHAQMNGRKITLKR-EQESEKPSQEL--LEYNIQQKQSQMLEMQVELSSMKDRATELQEQLSSEKM 3151
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSELRRiENRLDELSQELsdASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3152 VVAELKSELAQTKLELETTLKAQHKHLKELEAF-----RLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLgRS 3226
Cdd:TIGR02169 752 EIENVKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK-EY 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3227 EERDKEELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGRNLELQVLLESEKVRIREMSS 3306
Cdd:TIGR02169 831 LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3307 TLDRERELHAQLQSSDGTGQSR------------PPLPSEDLLKELQKQLEEKHSRIVEL 3354
Cdd:TIGR02169 911 QIEKKRKRLSELKAKLEALEEElseiedpkgedeEIPEEELSLEDVQAELQRVEEEIRAL 970
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1911-2438 |
1.31e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.09 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1911 EQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQEleaeqqqiqeerellsrqkeaMKAEAGPV 1990
Cdd:TIGR04523 242 NEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQ---------------------LKSEISDL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1991 EQQLLQETEKLMKEKLEVQcqaEKVRDDLQKQVKaleiDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKfld 2070
Cdd:TIGR04523 301 NNQKEQDWNKELKSELKNQ---EKKLEEIQNQIS----QNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQN--- 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2071 eQAIDREHERDVFQQEIQKLEQQLKVVprfqpisEHQTREVEQLAnhlKEKTDKCSELLLSKEQLQRDIQERNEEIEKLE 2150
Cdd:TIGR04523 371 -EIEKLKKENQSYKQEIKNLESQINDL-------ESKIQNQEKLN---QQKDEQIKKLQQEKELLEKEIERLKETIIKNN 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2151 FRVRELEQALLVEDRKHfgaveakpeLSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEvqqlHMQLEIQKK 2230
Cdd:TIGR04523 440 SEIKDLTNQDSVKELII---------KNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE----LKKLNEEKK 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2231 ESTTRLQELEQENKLFKDDMEKLGLAIKesdamstqdqhvlfgkfaqiiqEKEVEIDQLNEQVTKLQQQLKITTDNKVIE 2310
Cdd:TIGR04523 507 ELEEKVKDLTKKISSLKEKIEKLESEKK----------------------EKESKISDLEDELNKDDFELKKENLEKEID 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2311 EKNELIRDLETQIECLMSDQEcvkrNREEEIEQLNEVIEKLQQELANIGQKTSmnahSLSEEADSLKHQLDVVIAEKLAL 2390
Cdd:TIGR04523 565 EKNKEIEELKQTQKSLKKKQE----EKQELIDQKEKEKKDLIKEIEEKEKKIS----SLEKELEKAKKENEKLSSIIKNI 636
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 22538393 2391 EQQVETANEEMTFMKNVLKETNFKMNQLtqelfsLKRERESVEKIQSI 2438
Cdd:TIGR04523 637 KSKKNKLKQEVKQIKETIKEIRNKWPEI------IKKIKESKTKIDDI 678
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
2180-2402 |
1.54e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2180 EVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAI-- 2257
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAra 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2258 --KESDAMSTQDQHVLFGKFAQIIQEKEVeIDQLNEQVTKLQQQLKitTDNKVIEEKNELIRDLETQIECLMSDQECVKR 2335
Cdd:COG3883 95 lyRSGGSVSYLDVLLGSESFSDFLDRLSA-LSKIADADADLLEELK--ADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22538393 2336 NREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMT 2402
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1907-2244 |
1.70e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1907 SRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQqqiqeerELLSRQKEAMKAE 1986
Cdd:TIGR02169 708 SQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARI-------EELEEDLHKLEEA 780
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1987 AGPVEQQLLQEteklmkeklevqcQAEKVRDDLQKqvkaLEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMR 2066
Cdd:TIGR02169 781 LNDLEARLSHS-------------RIPEIQAELSK----LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRI 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2067 KfLDEQAIDREHERDVFQQEIQKLEQQLKvvprfqpisEHQTrEVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEI 2146
Cdd:TIGR02169 844 D-LKEQIKSIEKEIENLNGKKEELEEELE---------ELEA-ALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2147 EKLEFRVRELEQALLV--------EDRKHFGAVEAKPELSLEvQLQAERdaiDRKEKEITNLEE----QLEQFREELENK 2214
Cdd:TIGR02169 913 EKKRKRLSELKAKLEAleeelseiEDPKGEDEEIPEEELSLE-DVQAEL---QRVEEEIRALEPvnmlAIQEYEEVLKRL 988
|
330 340 350
....*....|....*....|....*....|
gi 22538393 2215 NeEVQQLHMQLEIQKKESTTRLQELEQENK 2244
Cdd:TIGR02169 989 D-ELKEKRAKLEEERKAILERIEEYEKKKR 1017
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
503-782 |
1.76e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.86 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 503 QDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESR 582
Cdd:pfam01576 204 QELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESE 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 583 KELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEaelerLRTQllfsHEEELSKLKEDLEIEHRInieklkdnlgih 662
Cdd:pfam01576 284 RAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQE-----LRSK----REQEVTELKKALEEETRS------------ 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 663 YKQQIDGLQNEMSQKIETMQFEKDNliTKQNQLILEISKlkdlqQSLVNskseemtlQINELQKEIEILRQ----EEKEK 738
Cdd:pfam01576 343 HEAQLQEMRQKHTQALEELTEQLEQ--AKRNKANLEKAK-----QALES--------ENAELQAELRTLQQakqdSEHKR 407
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 22538393 739 GTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKD 782
Cdd:pfam01576 408 KKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNE 451
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2110-2363 |
1.78e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2110 EVEQLANHLKEKTDKCSELLLSKEQLQ--RDIQERNEEIEKLEFRVRELEQalLVEDRKHFGAVEAkpelslevqLQAER 2187
Cdd:COG4913 226 AADALVEHFDDLERAHEALEDAREQIEllEPIRELAERYAAARERLAELEY--LRAALRLWFAQRR---------LELLE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2188 DAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEiqkKESTTRLQELEQEnklfkddmeklglaikesdamstqd 2267
Cdd:COG4913 295 AELEELRAELARLEAELERLEARLDALREELDELEAQIR---GNGGDRLEQLERE------------------------- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2268 qhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQLK-----ITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNREEEIE 2342
Cdd:COG4913 347 -----------IERLERELEERERRRARLEALLAalglpLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALR 415
|
250 260
....*....|....*....|.
gi 22538393 2343 QLNEVIEKLQQELANIGQKTS 2363
Cdd:COG4913 416 DLRRELRELEAEIASLERRKS 436
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1783-2157 |
2.36e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.43 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1783 VHEEHTRVTDESIPSYSGSDMPRND-INMWSKVTEEGTELSQRLVRSGFAGTE---IDPENEELMLNISSRlqaavEKLL 1858
Cdd:pfam17380 245 LAEDVTTMTPEYTVRYNGQTMTENEfLNQLLHIVQHQKAVSERQQQEKFEKMEqerLRQEKEEKAREVERR-----RKLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1859 EAisETSSQLEHAKvtQTELMRESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVidgyadEKTLFERQI 1938
Cdd:pfam17380 320 EA--EKARQAEMDR--QAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMREL------ERLQMERQQ 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1939 QEktdiiDRLEQELLCAsnrlqeleaeqqqiqeerellsRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQcqaekvrdd 2018
Cdd:pfam17380 390 KN-----ERVRQELEAA----------------------RKVKILEEERQRKIQQQKVEMEQIRAEQEEAR--------- 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2019 lQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQK-----LEQQ 2093
Cdd:pfam17380 434 -QREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEErkqamIEEE 512
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22538393 2094 LKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELE 2157
Cdd:pfam17380 513 RKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMERERE 576
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1978-2372 |
2.45e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 2.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1978 RQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIEL----EQEKNTELMDLRQ 2053
Cdd:PTZ00121 1465 KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAkkaeEAKKADEAKKAEE 1544
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2054 QNQALE-KQLEKMRKFLD----EQAIDREHERDVFQQEIQKLEQQlkvvprfqpiseHQTREVEQLANHLKEKTDKCSEL 2128
Cdd:PTZ00121 1545 KKKADElKKAEELKKAEEkkkaEEAKKAEEDKNMALRKAEEAKKA------------EEARIEEVMKLYEEEKKMKAEEA 1612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2129 LLSKEQLQRDIQERNEEIEKLefRVRELEQALLVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFR 2208
Cdd:PTZ00121 1613 KKAEEAKIKAEELKKAEEEKK--KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2209 EELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAiKESDAMSTQDQHVLFG---KFAQIIQEKEVE 2285
Cdd:PTZ00121 1691 AEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE-AEEDKKKAEEAKKDEEekkKIAHLKKEEEKK 1769
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2286 IDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLMSDQE----CVKRNREEEIEQLNEVI--EKLQQELANIG 2359
Cdd:PTZ00121 1770 AEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKegnlVINDSKEMEDSAIKEVAdsKNMQLEEADAF 1849
|
410
....*....|...
gi 22538393 2360 QKTSMNAHSLSEE 2372
Cdd:PTZ00121 1850 EKHKFNKNNENGE 1862
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
484-738 |
2.54e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 484 NEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHK 563
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 564 SLSTVedLKAEIVSASESRKELELKHEAEVTNYKiklemlekeKNAVLDRMAESQEAELERLRTQLlfsheEELSKLKED 643
Cdd:COG4942 105 ELAEL--LRALYRLGRQPPLALLLSPEDFLDAVR---------RLQYLKYLAPARREQAEELRADL-----AELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 644 LEIEhrinieklkdnlgihyKQQIDGLQNEMSQKIETMQfekdNLITKQNQLILEISKLKDLQQslvnSKSEEMTLQINE 723
Cdd:COG4942 169 LEAE----------------RAELEALLAELEEERAALE----ALKAERQKLLARLEKELAELA----AELAELQQEAEE 224
|
250
....*....|....*
gi 22538393 724 LQKEIEILRQEEKEK 738
Cdd:COG4942 225 LEALIARLEAEAAAA 239
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
525-764 |
2.74e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 2.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 525 ALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLstvEDLKAEIVSASESRKELElkheAEVTNYKIKLEMLE 604
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL---AALERRIAALARRIRALE----QELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 605 KEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQnemsQKIETMQFE 684
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELR----ADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 685 KDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLqINELQKEIEILRQEEKEkgtLEQEVQELQLKTELLEKQMKEKEN 764
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALKAERQKL-LARLEKELAELAAELAE---LQQEAEELEALIARLEAEAAAAAE 241
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
526-733 |
2.83e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.93 E-value: 2.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 526 LQRQLEDLVEELSFSREQIQRARQTIAEQESKLN---EAHKSLSTVEDLKAEIVSASESRKELElKHEAEVTNYKIKLEM 602
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEefrQKNGLVDLSEEAKLLLQQLSELESQLA-EARAELAEAEARLAA 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 603 LEKEKNAVLDRMAE-SQEAELERLRTQLLfSHEEELSKLKEDLEIEH--RINIEKLKDNLGIHYKQQIDGLQNEMSQKIE 679
Cdd:COG3206 245 LRAQLGSGPDALPElLQSPVIQQLRAQLA-ELEAELAELSARYTPNHpdVIALRAQIAALRAQLQQEAQRILASLEAELE 323
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 22538393 680 TMQFEKDNLITKQNQLILEISKLKDLQQslvnskseemtlQINELQKEIEILRQ 733
Cdd:COG3206 324 ALQAREASLQAQLAQLEARLAELPELEA------------ELRRLEREVEVARE 365
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1855-2755 |
2.84e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.27 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1855 EKLLEAISETSSQLEHakvtQTELMRESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVIDGYADEKTLF 1934
Cdd:pfam02463 173 EALKKLIEETENLAEL----IIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1935 ERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELlsrQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEK 2014
Cdd:pfam02463 249 EQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELK---LLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKK 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2015 VRDDLQKQvkaleidvEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQL 2094
Cdd:pfam02463 326 AEKELKKE--------KEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEEL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2095 KVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVEDRKHFGAVEAK 2174
Cdd:pfam02463 398 ELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKET 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2175 PELSLEVQLQAERDAIDRKEkeitnlEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLG 2254
Cdd:pfam02463 478 QLVKLQEQLELLLSRQKLEE------RSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIV 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2255 LAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKI-TTDNKVIEEKNELIRDLETQIECLMSDQE-C 2332
Cdd:pfam02463 552 EVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIdPILNLAQLDKATLEADEDDKRAKVVEGILkD 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2333 VKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETN 2412
Cdd:pfam02463 632 TELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2413 FKMNQLTQELFSLKRERESVEKIQSIPENsvnvaidhLSKDKPELEVVLTEDALKSLENQTYFKSFEENGKGSIINLEtr 2492
Cdd:pfam02463 712 LKKLKLEAEELLADRVQEAQDKINEELKL--------LKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEERE-- 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2493 llqlestvsaKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEKVAAALVSQIQLEAVQEYAKFCQdNQTISSE 2572
Cdd:pfam02463 782 ----------KTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELK-EEQKLEK 850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2573 PERTNIQNLNQLREDELGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEKKLLELQKLLEGNEKKQREK 2652
Cdd:pfam02463 851 LAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEIL 930
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2653 EKKRSPQDVEVL--KTTTELFHSNEESGFFNELEALRAESVATKAELASYKEKAEKLQEELLVKETNMTSLQKDLSQVRd 2730
Cdd:pfam02463 931 LKYEEEPEELLLeeADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIR- 1009
|
890 900
....*....|....*....|....*
gi 22538393 2731 hlAEAKEKLSILEKEDETEVQESKK 2755
Cdd:pfam02463 1010 --AIIEETCQRLKEFLELFVSINKG 1032
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
700-899 |
3.07e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 3.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 700 SKLKDLQQSLvnsksEEMTLQINELQKEIEILRQEEKEkgtLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSI 779
Cdd:COG4942 27 AELEQLQQEI-----AELEKELAALKKEEKALLKQLAA---LERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 780 LKDEKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEKNFEV 859
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 22538393 860 NYQELQEEYACLLKVKDD---LEDSKNKQELEYKSKLKALNEE 899
Cdd:COG4942 179 LLAELEEERAALEALKAErqkLLARLEKELAELAAELAELQQE 221
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
2181-2358 |
3.22e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.30 E-value: 3.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2181 VQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAI--K 2258
Cdd:COG1579 10 LDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRnnK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2259 ESDAMSTQdqhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQlkittdnkvIEEKNELIRDLETQIECLMSDQECVKRNRE 2338
Cdd:COG1579 90 EYEALQKE------------IESLKRRISDLEDEILELMER---------IEELEEELAELEAELAELEAELEEKKAELD 148
|
170 180
....*....|....*....|
gi 22538393 2339 EEIEQLNEVIEKLQQELANI 2358
Cdd:COG1579 149 EELAELEAELEELEAEREEL 168
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1852-2449 |
3.73e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 3.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1852 AAVEKLLEAISETSSQLEHAKVTQTELMRE---SFRQKQEATE-SLKCQEELRERLHEESRAREQLAVELSKA--EGVID 1925
Cdd:pfam12128 318 AKDRSELEALEDQHGAFLDADIETAAADQEqlpSWQSELENLEeRLKALTGKHQDVTAKYNRRRSKIKEQNNRdiAGIKD 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1926 GYADEKTLFERQIQEKTDIIDRLEQEL---LCASNRLQELEAEQQQIQEERELLsRQKEAMKAEAGPVEQQLLQETEKLM 2002
Cdd:pfam12128 398 KLAKIREARDRQLAVAEDDLQALESELreqLEAGKLEFNEEEYRLKSRLGELKL-RLNQATATPELLLQLENFDERIERA 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2003 KEKLEvqcQAEKVRDDLQKQVKALEIDVEEQVSRFieleQEKNTELMDLRQQNQALEKQLE----KMRKFLDEQAID-RE 2077
Cdd:pfam12128 477 REEQE---AANAEVERLQSELRQARKRRDQASEAL----RQASRRLEERQSALDELELQLFpqagTLLHFLRKEAPDwEQ 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2078 HERDVFQQEiqkLEQQLKVVPRFQPISEHQTREVEQLANHLKektdkcselllskeqlQRDIQERNEEIEKLEFRVRELE 2157
Cdd:pfam12128 550 SIGKVISPE---LLHRTDLDPEVWDGSVGGELNLYGVKLDLK----------------RIDVPEWAASEEELRERLDKAE 610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2158 QALLVEDRKHfgaveakpeLSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQ----KKEST 2233
Cdd:pfam12128 611 EALQSAREKQ---------AAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKAlaerKDSAN 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2234 TRLQELEQENKLFKDDMEKLGLAIKE-----SDAMSTQDQHV---LFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTD 2305
Cdd:pfam12128 682 ERLNSLEAQLKQLDKKHQAWLEEQKEqkreaRTEKQAYWQVVegaLDAQLALLKAAIAARRSGAKAELKALETWYKRDLA 761
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2306 NKVIEEKNEL-----IRDLETQIECLMSDQECVKR--------------NREEEIEQLNEVIEKLQQELANIGQKTSMNA 2366
Cdd:pfam12128 762 SLGVDPDVIAklkreIRTLERKIERIAVRRQEVLRyfdwyqetwlqrrpRLATQLSNIERAISELQQQLARLIADTKLRR 841
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2367 HSLSEEADSLKHQLDVVIAE------------KLALEQQVETANEEMTFMKNVLKEtnfkmnqltqelFSLKRERESvEK 2434
Cdd:pfam12128 842 AKLEMERKASEKQQVRLSENlrglrcemsklaTLKEDANSEQAQGSIGERLAQLED------------LKLKRDYLS-ES 908
|
650
....*....|....*
gi 22538393 2435 IQSIPENSVNVAIDH 2449
Cdd:pfam12128 909 VKKYVEHFKNVIADH 923
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
3058-3238 |
3.84e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 3.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3058 QRIQEQGVEYQAAMECLQKADRrsllsEIQALHAQMNGRKITLKREQesekpsQELLEYNIQQKQSQMLEMQVELSSMKD 3137
Cdd:COG4913 255 EPIRELAERYAAARERLAELEY-----LRAALRLWFAQRRLELLEAE------LEELRAELARLEAELERLEARLDALRE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3138 RATELQEQLSSEKMV-VAELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWAL 3216
Cdd:COG4913 324 ELDELEAQIRGNGGDrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEAL 403
|
170 180
....*....|....*....|..
gi 22538393 3217 EKEKAKLGRSEERDKEELEDLK 3238
Cdd:COG4913 404 EEALAEAEAALRDLRRELRELE 425
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
489-776 |
3.91e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 3.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 489 KLMNVAINELNikLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSF---SREQIQRARQTIAEQ------ESKLN 559
Cdd:COG3206 94 PVLERVVDKLN--LDEDPLGEEASREAAIERLRKNLTVEPVKGSNVIEISYtspDPELAAAVANALAEAyleqnlELRRE 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 560 EAHKSLSTVEDLKAEIvsasesRKELELKhEAEVTNYKIK--LEMLEKEKNAVLDRMAESqEAELERLRTQLLfSHEEEL 637
Cdd:COG3206 172 EARKALEFLEEQLPEL------RKELEEA-EAALEEFRQKngLVDLSEEAKLLLQQLSEL-ESQLAEARAELA-EAEARL 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 638 SKLKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQL-ILEISKLKDLQQSLVNSKSEE 716
Cdd:COG3206 243 AALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIaALRAQLQQEAQRILASLEAEL 322
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22538393 717 MTL--QINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMkekeNDLQEKFAQLEAE 776
Cdd:COG3206 323 EALqaREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELY----ESLLQRLEEARLA 380
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
2133-2301 |
3.96e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.87 E-value: 3.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2133 EQLQRDIQERNEEIEKLEFRVRELEQalLVEDRKHFGAVEAKPELSL--EVQLQAERDAIDRKEKEITNLEEQLEQFREE 2210
Cdd:PRK04863 789 EQLRAEREELAERYATLSFDVQKLQR--LHQAFSRFIGSHLAVAFEAdpEAELRQLNRRRVELERALADHESQEQQQRSQ 866
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2211 LENKNEEVQQLHM---QLEIQKKES-TTRLQELEQEnklfkddmeklgLAIKESDAMSTQDQHVLFGKFAQI---IQEKE 2283
Cdd:PRK04863 867 LEQAKEGLSALNRllpRLNLLADETlADRVEEIREQ------------LDEAEEAKRFVQQHGNALAQLEPIvsvLQSDP 934
|
170
....*....|....*...
gi 22538393 2284 VEIDQLNEQVTKLQQQLK 2301
Cdd:PRK04863 935 EQFEQLKQDYQQAQQTQR 952
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2168-2398 |
4.23e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 4.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2168 FGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQL---EIQKKESTTRLQELEQE-- 2242
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIralEQELAALEAELAELEKEia 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2243 --NKLFKDDMEKLGLAIKESDAMSTQDQHVLF---GKFAQIIQEKEVeIDQLNEQVTKLQQQLKITTDNkvIEEKNELIR 2317
Cdd:COG4942 94 elRAELEAQKEELAELLRALYRLGRQPPLALLlspEDFLDAVRRLQY-LKYLAPARREQAEELRADLAE--LAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2318 DLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSmnahSLSEEADSLKHQLDVVIAEKLALEQQVETA 2397
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELA----ELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
.
gi 22538393 2398 N 2398
Cdd:COG4942 247 G 247
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
160-406 |
4.85e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.17 E-value: 4.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 160 MESELAGKQHEIEELNRELEEMRVTYGTEGLQ-------------QLQEFEAAIKQRDGIITQLTANLQQARREKDETMR 226
Cdd:TIGR04523 347 LKKELTNSESENSEKQRELEEKQNEIEKLKKEnqsykqeiknlesQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEK 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 227 EFLELTEQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIK 306
Cdd:TIGR04523 427 EIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKK 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 307 vyEMEQDKKVENSNKEEIQEKetiIEELNTKIIEEEKKTLELKDKLTTADKLL--GELQEQIVQKNQEIKNMKLELTNSK 384
Cdd:TIGR04523 507 --ELEEKVKDLTKKISSLKEK---IEKLESEKKEKESKISDLEDELNKDDFELkkENLEKEIDEKNKEIEELKQTQKSLK 581
|
250 260
....*....|....*....|..
gi 22538393 385 QKERQSSEEIKQLMGTVEELQK 406
Cdd:TIGR04523 582 KKQEEKQELIDQKEKEKKDLIK 603
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
265-785 |
4.99e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 46.25 E-value: 4.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 265 QAKQQILTHQQQLEEQDHLLEDYQKKKedFTMQISFLQEKikvyEMEQDKKVENSNKEEI-QEKETIIEELNTKIIEEEK 343
Cdd:pfam05483 276 KTKLQDENLKELIEKKDHLTKELEDIK--MSLQRSMSTQK----ALEEDLQIATKTICQLtEEKEAQMEELNKAKAAHSF 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 344 KTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSE-------EIKQLMGTVEELQKRNHKDSQFE- 415
Cdd:pfam05483 350 VVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKfknnkevELEELKKILAEDEKLLDEKKQFEk 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 416 -TDIVQRMEQETQRKLEQLRAELDEMYGQQIVQMKQEliRQHMAQMEEMKTrhkgEMENALRSYSNITVNEDQIKLMNva 494
Cdd:pfam05483 430 iAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSE--EHYLKEVEDLKT----ELEKEKLKNIELTAHCDKLLLEN-- 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 495 iNELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLN-EAHKSLSTVEDLKA 573
Cdd:pfam05483 502 -KELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKcKLDKSEENARSIEY 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 574 EIVSASESRKELELK---HEAEVTNYKIKLEMLEKEKNAVLDR-MAESQEAELERLRTQLLfshEEELSKLKEDLEiEHR 649
Cdd:pfam05483 581 EVLKKEKQMKILENKcnnLKKQIENKNKNIEELHQENKALKKKgSAENKQLNAYEIKVNKL---ELELASAKQKFE-EII 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 650 INIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQN---QLILEISKLKDLQQSLVNSKSEEMTLQINELQk 726
Cdd:pfam05483 657 DNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHkiaEMVALMEKHKHQYDKIIEERDSELGLYKNKEQ- 735
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 22538393 727 eieilrQEEKEKGTLEQEVQELQLKTELLEKQMkEKENDLQEKFAQLEAENSILKDEKK 785
Cdd:pfam05483 736 ------EQSSAKAALEIELSNIKAELLSLKKQL-EIEKEEKEKLKMEAKENTAILKDKK 787
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
252-474 |
5.22e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 252 RNSTHSSTAADLLQakQQILTHQQQLEEQDHLLEDYQKKKE--DFTMQISFLQEKIKVYEMEQdkkveNSNKEEIQEKET 329
Cdd:COG3206 168 LRREEARKALEFLE--EQLPELRKELEEAEAALEEFRQKNGlvDLSEEAKLLLQQLSELESQL-----AEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 330 IIEELNTKIIEEEKKTLELkdkltTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNH 409
Cdd:COG3206 241 RLAALRAQLGSGPDALPEL-----LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22538393 410 KDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQQI--------VQMKQELIRQHMAQMEEMKTRHKGEMENA 474
Cdd:COG3206 316 ASLEAELEALQAREASLQAQLAQLEARLAELPELEAelrrlereVEVARELYESLLQRLEEARLAEALTVGNV 388
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
634-996 |
5.37e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 5.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 634 EEELSKLKEDLEiEHRINIEKlkdnlgihykqqIDGLQNEMSQKIETMQFEKDNLItkqnqlileisKLKDLQQSLVNSK 713
Cdd:TIGR02169 169 DRKKEKALEELE-EVEENIER------------LDLIIDEKRQQLERLRREREKAE-----------RYQALLKEKREYE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 714 SEEMTLQINELQKEIEilrQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSilkDEKKTL-EDMLK 792
Cdd:TIGR02169 225 GYELLKEKEALERQKE---AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE---EEQLRVkEKIGE 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 793 IHTPVSQEERLIflDSIKSKSKDSvwEKEIEILIEENEDLKQQCIQLNEEIEKQR-------NTFSFAEKNFEVNYQELQ 865
Cdd:TIGR02169 299 LEAEIASLERSI--AEKERELEDA--EERLAKLEAEIDKLLAEIEELEREIEEERkrrdkltEEYAELKEELEDLRAELE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 866 EE-------YACLLKVKDDLEDSKNKQElEYKSKLKALNEELHLQRINPTTVKMKSSVFDEDKT-FVAETLEMGEVVEKD 937
Cdd:TIGR02169 375 EVdkefaetRDELKDYREKLEKLKREIN-ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINeLEEEKEDKALEIKKQ 453
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 22538393 938 TTELMEklevTKREKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRE 996
Cdd:TIGR02169 454 EWKLEQ----LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRG 508
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
506-760 |
5.63e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 5.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 506 NSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLstvEDLKAEIVSASESRKEL 585
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQEL---AALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 586 ELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHeeelsklkedLEIEHRINIEKLKDNLgihykQ 665
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKY----------LAPARREQAEELRADL-----A 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 666 QIDGLQnemsQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEemtlQINELQKEIEILRQEEKEkgtLEQEV 745
Cdd:COG4942 161 ELAALR----AELEAERAELEALLAELEEERAALEALKAERQKLLARLEK----ELAELAAELAELQQEAEE---LEALI 229
|
250
....*....|....*
gi 22538393 746 QELQLKTELLEKQMK 760
Cdd:COG4942 230 ARLEAEAAAAAERTP 244
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
3066-3421 |
5.63e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 5.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3066 EYQAAMECLQKADRRSLLSEIQALHAQMNGRKITLKREQESEKPSQElleynIQQKQSQMLEMQVELSSMKDRATELQEQ 3145
Cdd:PTZ00121 1300 EKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE-----AAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3146 LSSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAfRLEVKDKTDEVhllnDTLASEQKKSREL-QWALEKEKAKLG 3224
Cdd:PTZ00121 1375 EAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKK-AAAAKKKADEA----KKKAEEKKKADEAkKKAEEAKKADEA 1449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3225 RSEERDKEELEDLKFSLESQKQRNL-----QLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGRNLELQvlLESEKV 3299
Cdd:PTZ00121 1450 KKKAEEAKKAEEAKKKAEEAKKADEakkkaEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEA--KKADEA 1527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3300 RIREMSSTLDRERELHaQLQSSDGTGQSRPPLPSEDLLKELQKQLEEKHS----RIVELLNETEKYKLDSLQTRQQMEKD 3375
Cdd:PTZ00121 1528 KKAEEAKKADEAKKAE-EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKnmalRKAEEAKKAEEARIEEVMKLYEEEKK 1606
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 22538393 3376 RQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEEKRQQVYKL 3421
Cdd:PTZ00121 1607 MKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
148-768 |
5.63e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.32 E-value: 5.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 148 QGAQDSPTHLEMMESELAGKQHEIE--------------ELNRELEEMRVTYGTEGlqqlQEFEAAIKQRDGIITQLTAN 213
Cdd:pfam01576 15 QKVKERQQKAESELKELEKKHQQLCeeknalqeqlqaetELCAEAEEMRARLAARK----QELEEILHELESRLEEEEER 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 214 LQQARREKDETMREFLELTEQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQilthQQQLEEQDHLLEDyqkKKED 293
Cdd:pfam01576 91 SQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQ----NSKLSKERKLLEE---RISE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 294 FTMQISFLQEKIKVYEMEQDKkvensnkeeiqeKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEI 373
Cdd:pfam01576 164 FTSNLAEEEEKAKSLSKLKNK------------HEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQI 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 374 KNMKLELTnSKQKERQSS---------------EEIKQLMGTVEELQKrnhkdsQFETDIVQRMEQETQRK-----LEQL 433
Cdd:pfam01576 232 AELRAQLA-KKEEELQAAlarleeetaqknnalKKIRELEAQISELQE------DLESERAARNKAEKQRRdlgeeLEAL 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 434 RAEL----DEMYGQQIVQMKQEL------------IRQHMAQMEEMKTRHKG-------EMENALRSYSNITVN----ED 486
Cdd:pfam01576 305 KTELedtlDTTAAQQELRSKREQevtelkkaleeeTRSHEAQLQEMRQKHTQaleelteQLEQAKRNKANLEKAkqalES 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 487 QIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLS 566
Cdd:pfam01576 385 ENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVS 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 567 TVEdlkaeivSASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAelERLRTQLLFSHEEELSKLKEDLEi 646
Cdd:pfam01576 465 SLE-------SQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEA--KRNVERQLSTLQAQLSDMKKKLE- 534
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 647 EHRINIEKLKDNLGiHYKQQIDGLQNEMSQKIET----------MQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEE 716
Cdd:pfam01576 535 EDAGTLEALEEGKK-RLQRELEALTQQLEEKAAAydklektknrLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEE 613
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 22538393 717 MTLQiNELQKEIEILRQEEKEKGT----LEQEVQELQLKTELLEKQMKEKENDLQE 768
Cdd:pfam01576 614 KAIS-ARYAEERDRAEAEAREKETralsLARALEEALEAKEELERTNKQLRAEMED 668
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
3205-3437 |
5.99e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 5.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3205 EQKKSRELQWALEKEKAKLGRSEERDKE-----ELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQ 3279
Cdd:pfam17380 305 KEEKAREVERRRKLEEAEKARQAEMDRQaaiyaEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQ 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3280 LSEEQGRNLELQVLLESEKVRIREMsstlDRERELHAQLQSSDGTGQSRpplpsEDLLKELQKQLEEKHSRivellnETE 3359
Cdd:pfam17380 385 MERQQKNERVRQELEAARKVKILEE----ERQRKIQQQKVEMEQIRAEQ-----EEARQREVRRLEEERAR------EME 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3360 KYKLDSLQTRQQMEKDRQ--VHRKTLQTEQEANTEGQKKMHELQSKVedLQRQLEEKRQQVYKLDLEGQRLQGIMQEFQK 3437
Cdd:pfam17380 450 RVRLEEQERQQQVERLRQqeEERKRKKLELEKEKRDRKRAEEQRRKI--LEKELEERKQAMIEEERKRKLLEKEMEERQK 527
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
309-770 |
6.86e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 6.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 309 EMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLG--ELQEQIVQKNQEIKNMKLELTNSKQK 386
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQllPLYQELEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 387 ErqssEEIKQLMGTVEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEmygqqiVQMKQELIRQHMAQMEEMKTR 466
Cdd:COG4717 155 L----EELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEE------LQQRLAELEEELEEAQEELEE 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 467 HKGEMENALRSYSNITVNE--DQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQI 544
Cdd:COG4717 225 LEEELEQLENELEAAALEErlKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 545 QRARQTIAE---QESKLNEAHKSLSTVEDLKAEIVSASESRKE--LELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQE 619
Cdd:COG4717 305 EELQALPALeelEEEELEELLAALGLPPDLSPEELLELLDRIEelQELLREAEELEEELQLEELEQEIAALLAEAGVEDE 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 620 AELERLRTQL--LFSHEEELSKLKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQnemsQKIETMQFEKDNLITKQNQLIL 697
Cdd:COG4717 385 EELRAALEQAeeYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELE----EELEELEEELEELREELAELEA 460
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22538393 698 EISKLKDLQqslvnskseemtlQINELQKEIEILRQEEKEkgtLEQEVQELQLKTELLEKQMKEKENDLQEKF 770
Cdd:COG4717 461 ELEQLEEDG-------------ELAELLQELEELKAELRE---LAEEWAALKLALELLEEAREEYREERLPPV 517
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
3137-3417 |
7.23e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 7.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3137 DRATELQEQLSsekmvvaELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQwal 3216
Cdd:COG4942 20 DAAAEAEAELE-------QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE--- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3217 eKEKAKLGRSEERDKEELedlkfslesqkqrnlqlnllleqqkqllnesqqkiesQRMLYDAQLSeeqGRNLELQVLLES 3296
Cdd:COG4942 90 -KEIAELRAELEAQKEEL-------------------------------------AELLRALYRL---GRQPPLALLLSP 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3297 EK----VRIREMSSTLDRERELHAQLQSSDgtgqsrpplpsEDLLKELQKQLEEKHSRIVELLNETEkykldslQTRQQM 3372
Cdd:COG4942 129 EDfldaVRRLQYLKYLAPARREQAEELRAD-----------LAELAALRAELEAERAELEALLAELE-------EERAAL 190
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 22538393 3373 EKDRQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEEKRQQ 3417
Cdd:COG4942 191 EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
2028-2323 |
7.46e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 7.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2028 IDVEEQVSRFIELEQEKntelmdLRQQNQALEKQLEKMRKF----------LDEQA----------IDREHERDVFQQEI 2087
Cdd:pfam17380 284 VSERQQQEKFEKMEQER------LRQEKEEKAREVERRRKLeeaekarqaeMDRQAaiyaeqermaMERERELERIRQEE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2088 QKLEQQlKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELL-------LSKEQLQRDIQERNEEIEKLEfrvRELEQAL 2160
Cdd:pfam17380 358 RKRELE-RIRQEEIAMEISRMRELERLQMERQQKNERVRQELeaarkvkILEEERQRKIQQQKVEMEQIR---AEQEEAR 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2161 LVEDRKhfgaveakpelsLEVQLQAERDAIDRKEKEitnLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELE 2240
Cdd:pfam17380 434 QREVRR------------LEEERAREMERVRLEEQE---RQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILE 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2241 QENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLE 2320
Cdd:pfam17380 499 KELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMM 578
|
...
gi 22538393 2321 TQI 2323
Cdd:pfam17380 579 RQI 581
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
2029-2301 |
7.85e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.71 E-value: 7.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2029 DVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDReheRDVFQQEIQKLEQQLKVVPRFQpiseHQT 2108
Cdd:COG3096 847 ELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQANLLADETLADR---LEELREELDAAQEAQAFIQQHG----KAL 919
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2109 REVEQLANHLKEKTdkcsellLSKEQLQRDIQERNEEIEKLEFRVRELEQalLVEDRKHFGAVEAkpelslEVQLQAERD 2188
Cdd:COG3096 920 AQLEPLVAVLQSDP-------EQFEQLQADYLQAKEQQRRLKQQIFALSE--VVQRRPHFSYEDA------VGLLGENSD 984
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2189 AIDRKEKEITNLEEQLEQFREELENKNEEVQQLHmQLEIQKKES----TTRLQELEQEnklfkddMEKLGLAIK---ESD 2261
Cdd:COG3096 985 LNEKLRARLEQAEEARREAREQLRQAQAQYSQYN-QVLASLKSSrdakQQTLQELEQE-------LEELGVQADaeaEER 1056
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 22538393 2262 AMSTQDQ-----HVLFGKFAQI---IQEKEVEIDQLNEQVTKLQQQLK 2301
Cdd:COG3096 1057 ARIRRDElheelSQNRSRRSQLekqLTRCEAEMDSLQKRLRKAERDYK 1104
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2080-2317 |
8.41e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 8.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2080 RDVFQQEIQK-LEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQ 2158
Cdd:COG4717 44 RAMLLERLEKeADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2159 ALlvedrkhfgavEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQE 2238
Cdd:COG4717 124 LL-----------QLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEE 192
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22538393 2239 LEQEnklFKDDMEKLGLAIKESDamstqdqhvlfgkfaQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIR 2317
Cdd:COG4717 193 ELQD---LAEELEELQQRLAELE---------------EELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLL 253
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
301-586 |
8.54e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 8.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 301 LQEKIKVYEMEQDKKVENSNKEEI-QEKETIIEELNT--KIIEEEKKTLELKDKLTTadkLLGELQEQIVQKNQEIKNMK 377
Cdd:pfam17380 278 VQHQKAVSERQQQEKFEKMEQERLrQEKEEKAREVERrrKLEEAEKARQAEMDRQAA---IYAEQERMAMERERELERIR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 378 LElTNSKQKERQSSEEIKQLMGTVEELQK----RNHKDSQFETDI-----VQRMEQETQRK-------LEQLRAELDEMY 441
Cdd:pfam17380 355 QE-ERKRELERIRQEEIAMEISRMRELERlqmeRQQKNERVRQELeaarkVKILEEERQRKiqqqkveMEQIRAEQEEAR 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 442 GQQIVQMK------------QELIRQH----MAQMEEMKTRHKGEMENALRSYSNItvNEDQIKLMNVAINELNIKLQDT 505
Cdd:pfam17380 434 QREVRRLEeeraremervrlEEQERQQqverLRQQEEERKRKKLELEKEKRDRKRA--EEQRRKILEKELEERKQAMIEE 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 506 NSQKEKLKEELGlilEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVE---DLKAEIVSASESR 582
Cdd:pfam17380 512 ERKRKLLEKEME---ERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMErerEMMRQIVESEKAR 588
|
....
gi 22538393 583 KELE 586
Cdd:pfam17380 589 AEYE 592
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
684-1008 |
8.91e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.30 E-value: 8.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 684 EKDNLITK-QNQLILEIsklKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQ-LKTELLEKQMKE 761
Cdd:PRK05771 17 YKDEVLEAlHELGVVHI---EDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSvKSLEELIKDVEE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 762 KENDLQEKFAQLEAENSILKDEKKTLEdmlkihtpvSQEERLIFLDSikskskdsvwekeieilieenedlkqqciqLNE 841
Cdd:PRK05771 94 ELEKIEKEIKELEEEISELENEIKELE---------QEIERLEPWGN------------------------------FDL 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 842 EIEKQRNTfsfaeKNFEVNYQELQEEYACLLKvkddLEDSKNKQELEYKSKLKALneelhlqrINPTTVKmkssvfdEDK 921
Cdd:PRK05771 135 DLSLLLGF-----KYVSVFVGTVPEDKLEELK----LESDVENVEYISTDKGYVY--------VVVVVLK-------ELS 190
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 922 TFVAETLEMGEVVEKDTtelmeklevtkREKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRE-LEII 1000
Cdd:PRK05771 191 DEVEEELKKLGFERLEL-----------EEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEyLEIE 259
|
....*...
gi 22538393 1001 INHNRAEN 1008
Cdd:PRK05771 260 LERAEALS 267
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
219-882 |
9.02e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.45 E-value: 9.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 219 REKDETMREFLELTEQSQKLQIQFQQLQASETLRNSTHsstAADLLQAKQQILTHQQQ--LEEQDHLLEDYQKKKEDFTM 296
Cdd:COG5022 806 LGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLK---AEVLIQKFGRSLKAKKRfsLLKKETIYLQSAQRVELAER 882
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 297 QISFLQEKIK----VYEM-EQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTL------ELKDKLTTADKLLGELQEQ 365
Cdd:COG5022 883 QLQELKIDVKsissLKLVnLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLnnidleEGPSIEYVKLPELNKLHEV 962
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 366 IVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQK--RNHKDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQ 443
Cdd:COG5022 963 ESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAElsKQYGALQESTKQLKELPVEVAELQSASKIISSESTEL 1042
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 444 QIVQMKQELIRQHMaqmeEMKTRHKGEMENALRSYSNITVNEDQIKLMNV------AINELNIKLQDTNSQKEKLKEE-- 515
Cdd:COG5022 1043 SILKPLQKLKGLLL----LENNQLQARYKALKLRRENSLLDDKQLYQLEStenllkTINVKDLEVTNRNLVKPANVLQfi 1118
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 516 ------LGLILEEK-----------------CALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHK-----SLST 567
Cdd:COG5022 1119 vaqmikLNLLQEISkflsqlvntlepvfqklSVLQLELDGLFWEANLEALPSPPPFAALSEKRLYQSALYDeksklSSSE 1198
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 568 VEDLKAEIVS-ASESRKELELKHE-----AEVTNYKIKLEMLeKEKNAVLDRMAESQEAELERLRTQLLfSHEEELSKLK 641
Cdd:COG5022 1199 VNDLKNELIAlFSKIFSGWPRGDKlkkliSEGWVPTEYSTSL-KGFNNLNKKFDTPASMSNEKLLSLLN-SIDNLLSSYK 1276
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 642 EDLEIEHRInieklkdnlgihykqqidglQNEMSQKIETMQFekDNLITKQNQLILEISKLKDLQQSLVNSKSEEMtlQI 721
Cdd:COG5022 1277 LEEEVLPAT--------------------INSLLQYINVGLF--NALRTKASSLRWKSATEVNYNSEELDDWCREF--EI 1332
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 722 NELQKEIEilrqeekekgTLEQEVQELQLKtellekqmKEKENDLQEKFAQLEAENSILKDEKKTLEDMLKIHTPVSQEe 801
Cdd:COG5022 1333 SDVDEELE----------ELIQAVKVLQLL--------KDDLNKLDELLDACYSLNPAEIQNLKSRYDPADKENNLPKE- 1393
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 802 rliFLDSIKSKSKDSvwekeieiLIEENEDLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEYACLLKVKDDLEDS 881
Cdd:COG5022 1394 ---ILKKIEALLIKQ--------ELQLSLEGKDETEVHLSEIFSEEKSLISLDRNSIYKEEVLSSLSALLTKEKIALLDR 1462
|
.
gi 22538393 882 K 882
Cdd:COG5022 1463 K 1463
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
154-498 |
9.32e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 9.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 154 PTHLEMMESELAGKQHEIEELnRELEEMRVTYGTEGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREfLELTE 233
Cdd:TIGR00606 708 PDKLKSTESELKKKEKRRDEM-LGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPE-EESAK 785
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 234 QSQKLQIQFQQLQaSETLRNSTHSSTAADLLQAKQQILTHQQ---QLEEQDHLL-------EDYQKKKEDFTMQISFLQE 303
Cdd:TIGR00606 786 VCLTDVTIMERFQ-MELKDVERKIAQQAAKLQGSDLDRTVQQvnqEKQEKQHELdtvvskiELNRKLIQDQQEQIQHLKS 864
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 304 KIKVYEMEQDKKVENSNK-----EEIQEKETIIEELNTKIIEEEKKTLELKdklTTADKLLGELQEQIVQKNQEIKNMKL 378
Cdd:TIGR00606 865 KTNELKSEKLQIGTNLQRrqqfeEQLVELSTEVQSLIREIKDAKEQDSPLE---TFLEKDQQEKEELISSKETSNKKAQD 941
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 379 ELTNSKQKERQSSEEIKQLMGTVEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQQIVQMKQELIRQHma 458
Cdd:TIGR00606 942 KVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQD-- 1019
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 22538393 459 QMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAINEL 498
Cdd:TIGR00606 1020 NLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKL 1059
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
170-587 |
9.72e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 9.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 170 EIEELNRELEEMRVTYGTEglqqLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQLQaSE 249
Cdd:TIGR00606 692 ELQEFISDLQSKLRLAPDK----LKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLK-ND 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 250 TLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDKKVENSN----KEEIQ 325
Cdd:TIGR00606 767 IEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHEldtvVSKIE 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 326 EKETIIEELNTKIIEEEKKTLELKD---KLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVE 402
Cdd:TIGR00606 847 LNRKLIQDQQEQIQHLKSKTNELKSeklQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 403 ELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQQIVQMKQEL--IRQHMAQMEEMKTRHKGEMENALRSYSN 480
Cdd:TIGR00606 927 ELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKEteLNTVNAQLEECEKHQEKINEDMRLMRQD 1006
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 481 ITVNEDQIKLM--NVAINELNIKLQDTNSQKEKLKEELG--LILEEKCALQRQLEDL-----VEELSFSREQIQRARQTI 551
Cdd:TIGR00606 1007 IDTQKIQERWLqdNLTLRKRENELKEVEEELKQHLKEMGqmQVLQMKQEHQKLEENIdlikrNHVLALGRQKGYEKEIKH 1086
|
410 420 430
....*....|....*....|....*....|....*.
gi 22538393 552 AEQESKLNEAHKSLSTVEDLKAEIVSASESRKELEL 587
Cdd:TIGR00606 1087 FKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDI 1122
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
541-738 |
1.09e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.77 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 541 REQIQRARQTIAEQESKlneahkslSTVEDLKAEivsASESRKELELKHEAEVTNYKIKLEMLEKEKNavldrmaesqeA 620
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAK--------RILEEAKKE---AEAIKKEALLEAKEEIHKLRNEFEKELRERR-----------N 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 621 ELERLRTQLLfSHEEELSKLKEDLEIEHRInIEKLKDNLgihykqqidglqNEMSQKIETMQFEKDNLITKQNQLILEIS 700
Cdd:PRK12704 83 ELQKLEKRLL-QKEENLDRKLELLEKREEE-LEKKEKEL------------EQKQQELEKKEEELEELIEEQLQELERIS 148
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 22538393 701 KL--KDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEK 738
Cdd:PRK12704 149 GLtaEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADK 188
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1908-2500 |
1.15e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1908 RAREQLAVELSKAEGVIDGYADEKTlfERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLsrqKEAMKAEA 1987
Cdd:COG4913 262 ERYAAARERLAELEYLRAALRLWFA--QRRLELLEAELEELRAELARLEAELERLEARLDALREELDEL---EAQIRGNG 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1988 GPVEQQLLQETEKLMKEKLEVqcqaEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKmrk 2067
Cdd:COG4913 337 GDRLEQLEREIERLERELEER----ERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAE--- 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2068 fLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQpiseHQTREveQLANHLKEKTDKC---SELLlskeqlqrDIQERNE 2144
Cdd:COG4913 410 -AEAALRDLRRELRELEAEIASLERRKSNIPARL----LALRD--ALAEALGLDEAELpfvGELI--------EVRPEEE 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2145 E----IEKLefrVRELEQALLVEDRkHFGAV-EAKPELSLEVQLQAERDAIDRKEKEITNLEEQleQFREELENKNEEVQ 2219
Cdd:COG4913 475 RwrgaIERV---LGGFALTLLVPPE-HYAAAlRWVNRLHLRGRLVYERVRTGLPDPERPRLDPD--SLAGKLDFKPHPFR 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2220 Q-LHMQLE----IQKKESTtrlQELEQENK-LFKDDMEKLGLAIKESDAMSTQDQHVLFGKFA-QIIQEKEVEIDQLNEQ 2292
Cdd:COG4913 549 AwLEAELGrrfdYVCVDSP---EELRRHPRaITRAGQVKGNGTRHEKDDRRRIRSRYVLGFDNrAKLAALEAELAELEEE 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2293 VTKLQQQL-KITTDNKVIEEKNELIRDLETQIEclmsdqecvkrnREEEIEQLNEVIEKLQQELAnigqktsmnahSLSE 2371
Cdd:COG4913 626 LAEAEERLeALEAELDALQERREALQRLAEYSW------------DEIDVASAEREIAELEAELE-----------RLDA 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2372 EADSLKhqldvviaeklALEQQVETANEEmtfmknvLKETNFKMNQLTQELFSLKRERESVEKIQsipeNSVNVAIDHLS 2451
Cdd:COG4913 683 SSDDLA-----------ALEEQLEELEAE-------LEELEEELDELKGEIGRLEKELEQAEEEL----DELQDRLEAAE 740
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 22538393 2452 KDKPELEVVLTEDALKSLENQTYFKSFEENGKGSIINLETRLLQLESTV 2500
Cdd:COG4913 741 DLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1930-2241 |
1.24e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1930 EKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAeqqqiqeerellsrqkeamkaEAGPVEQQLLQETEKLMKEKLEVQ 2009
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEK---------------------RLEEIEQLLEELNKKIKDLGEEEQ 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2010 CQaekvrddLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKfLDEQAIDREHERDVFQQEIQK 2089
Cdd:TIGR02169 290 LR-------VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEE-LEREIEEERKRRDKLTEEYAE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2090 LEQQLKVVprfqpisehqTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVEDRKHFG 2169
Cdd:TIGR02169 362 LKEELEDL----------RAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG 431
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22538393 2170 AVEAKPElsLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLH-----MQLEIQKKESTTRLQELEQ 2241
Cdd:TIGR02169 432 IEAKINE--LEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEkelskLQRELAEAEAQARASEERV 506
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
266-439 |
1.29e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.62 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 266 AKQQILTHQQQLEEQDHL----LEDYQKK-------KEDFTMQISFLQEKIKVYEMEQDK-----------------KVE 317
Cdd:PHA02562 193 IQQQIKTYNKNIEEQRKKngenIARKQNKydelveeAKTIKAEIEELTDELLNLVMDIEDpsaalnklntaaakiksKIE 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 318 NSNKEE-IQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIvQKNQEIKNMKLELTNSKQKERQSSEEIKQ 396
Cdd:PHA02562 273 QFQKVIkMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAI-DELEEIMDEFNEQSKKLLELKNKISTNKQ 351
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 22538393 397 LMGTVEELQKRNHKD-SQFETDIVQRMEQetqrkLEQLRAELDE 439
Cdd:PHA02562 352 SLITLVDKAKKVKAAiEELQAEFVDNAEE-----LAKLQDELDK 390
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
3100-3332 |
1.31e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3100 LKREQESEKPSQELLEYNIQQKQSQMLEMQVELSSMKDRATELQEQLSSEKMVVAELKSELAQTKLE---LETTLKAQHK 3176
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEiaeLRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3177 HLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLGRSEERDKEELEDLKFSLESQKQRNLQLNLLLE 3256
Cdd:COG4942 105 ELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22538393 3257 QQKQLLNESQQKIESQRMLYDAQLSEEQGRNLELQvlleSEKVRIREMSSTLDRERELHAQLQSSDGTGQSRPPLP 3332
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAELAELQ----QEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
231-814 |
1.45e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.96 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 231 LTEQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQE---KIKV 307
Cdd:TIGR00618 199 LTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEElraQEAV 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 308 YEMEQD---------------KKVENSNKE------EIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQI 366
Cdd:TIGR00618 279 LEETQErinrarkaaplaahiKAVTQIEQQaqrihtELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIR 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 367 VQKNQE----------------IKNMKLELTNSKQKERQSSEEIKQLMgtvEELQKRNHKDSQFETDIVQRMEQETQRKL 430
Cdd:TIGR00618 359 DAHEVAtsireiscqqhtltqhIHTLQQQKTTLTQKLQSLCKELDILQ---REQATIDTRTSAFRDLQGQLAHAKKQQEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 431 EQLRAELDEMYGQQIVQMKQELIR--QHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIK--------LMNVAINELNI 500
Cdd:TIGR00618 436 QQRYAELCAAAITCTAQCEKLEKIhlQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLlelqeepcPLCGSCIHPNP 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 501 KLQD------TNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAE 574
Cdd:TIGR00618 516 ARQDidnpgpLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVR 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 575 IVSASESRKELELKHEAEVTNYKIKLEmlekEKNAVLDRMAESQEAElERLRTQLLFSHEEELSKLKEDLEiEHRINIEK 654
Cdd:TIGR00618 596 LQDLTEKLSEAEDMLACEQHALLRKLQ----PEQDLQDVRLHLQQCS-QELALKLTALHALQLTLTQERVR-EHALSIRV 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 655 LKDNLGIHYKQQIDGLQNEMSQ--KIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLQ---INELQKEIE 729
Cdd:TIGR00618 670 LPKELLASRQLALQKMQSEKEQltYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAARedaLNQSLKELM 749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 730 ILRQEEKEKGTLEQEVQELQLKTEL--------LEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLKIHTPVSQEE 801
Cdd:TIGR00618 750 HQARTVLKARTEAHFNNNEEVTAALqtgaelshLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQE 829
|
650
....*....|...
gi 22538393 802 RLIFLDSIKSKSK 814
Cdd:TIGR00618 830 EEQFLSRLEEKSA 842
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2110-2755 |
1.55e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2110 EVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEfRVRELEQALLVEDRKHfgAVEAKPELSLEVQLQAERDA 2189
Cdd:PTZ00121 1091 EATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAE-EARKAEDARKAEEARK--AEDAKRVEIARKAEDARKAE 1167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2190 IDRKEKEITNLEEQLeqfREELENKNEEVQQLHmqlEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQh 2269
Cdd:PTZ00121 1168 EARKAEDAKKAEAAR---KAEEVRKAEELRKAE---DARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAE- 1240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2270 vlfgkfaqiiQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLET--QIECLMSDQECVKRNREEEIEQLNEV 2347
Cdd:PTZ00121 1241 ----------EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADElkKAEEKKKADEAKKAEEKKKADEAKKK 1310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2348 IE--KLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSL 2425
Cdd:PTZ00121 1311 AEeaKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK 1390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2426 KRERESVEKIQSIPENSVNVAIDHLSKDKPEL------EVVLTEDALKSLENQtyfKSFEENGKGSIINLETRLLQLEST 2499
Cdd:PTZ00121 1391 KKADEAKKKAEEDKKKADELKKAAAAKKKADEakkkaeEKKKADEAKKKAEEA---KKADEAKKKAEEAKKAEEAKKKAE 1467
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2500 VSAKDLELTQCYKQIKDMQEQGQfETEMLQKKIVNLQKIVEEKVAAALVSQIQLEAVQEYAKFCQDNQTISSEPERTNIQ 2579
Cdd:PTZ00121 1468 EAKKADEAKKKAEEAKKADEAKK-KAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK 1546
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2580 NLNQLREDE---------------LGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEKKLLELQKLLEG 2644
Cdd:PTZ00121 1547 KADELKKAEelkkaeekkkaeeakKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK 1626
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2645 NEKKQREKEKKRSPQDVEVLKTTTELFHSNEESGFFNELEALRAESVATKAELASYKEKAEKLQEELLVKETNMtslQKD 2724
Cdd:PTZ00121 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE---AKK 1703
|
650 660 670
....*....|....*....|....*....|....
gi 22538393 2725 LSQVRDHLAEAKEKLSILEKEDE---TEVQESKK 2755
Cdd:PTZ00121 1704 AEELKKKEAEEKKKAEELKKAEEenkIKAEEAKK 1737
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
2192-2866 |
1.59e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2192 RKEKEITNLEE------QLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMST 2265
Cdd:pfam02463 150 MKPERRLEIEEeaagsrLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2266 QDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLN 2345
Cdd:pfam02463 230 DYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2346 EVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSL 2425
Cdd:pfam02463 310 VDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSA 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2426 KRERESVEKIQSIPENSVNVAIDHLSKDKPELEVVLTEDALKSLENQtyfkSFEENGKGSIINLETRLLQLESTVSAKDL 2505
Cdd:pfam02463 390 AKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEE----ESIELKQGKLTEEKEELEKQELKLLKDEL 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2506 ELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKI-----------------VEEKVAAALVSQIQLEAVQEYAKFCQDNQT 2568
Cdd:pfam02463 466 ELKKSEDLLKETQLVKLQEQLELLLSRQKLEERsqkeskarsglkvllalIKDGVGGRIISAHGRLGDLGVAVENYKVAI 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2569 ISSEPERTN--IQNLNQLREDELGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEKKLLELQKLLEGNE 2646
Cdd:pfam02463 546 STAVIVEVSatADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVV 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2647 KKQREKEKKRSPQDVEVLKTTTELFHSNEESGFFNELEALRAESVATKAELASYKEKAEKLQEELLVKET----NMTSLQ 2722
Cdd:pfam02463 626 EGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILrrqlEIKKKE 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2723 KDLSQVRDHLAEAKEKLSILEKEDETEVQESKKACMFEPLPIKLSKSIASQTDGTLKISSSNQTPQILVKNAGIQINLQS 2802
Cdd:pfam02463 706 QREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEK 785
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22538393 2803 ECSSEEVTEIISQFTEKIEKMQELHAAEILDMESRHISETETLKREHYVAVQLLKEECGTLKAV 2866
Cdd:pfam02463 786 LKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLE 849
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
677-783 |
1.61e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 44.69 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 677 KIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLE 756
Cdd:COG0542 405 EIDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRY 484
|
90 100
....*....|....*....|....*..
gi 22538393 757 KQMKEKENDLQEKFAQLEAENSILKDE 783
Cdd:COG0542 485 GKIPELEKELAELEEELAELAPLLREE 511
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
3179-3438 |
1.63e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3179 KELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELqwalEKEKAKLGRSEERDKEELEDLKfslesqkqrnlqlnllleqq 3258
Cdd:TIGR02169 688 RELSSLQSELRRIENRLDELSQELSDASRKIGEI----EKEIEQLEQEEEKLKERLEELE-------------------- 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3259 kqllnESQQKIESQRMLYDAQLSEEQGRNLELQVLLESEKVRIREMSSTLDRERelhaqlqssdgtgqsrpplpSEDLLK 3338
Cdd:TIGR02169 744 -----EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR--------------------IPEIQA 798
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3339 ELQKqLEEKHSRIVELLNETEKYKLDSLQTRQQMEKDRQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEEKRQQV 3418
Cdd:TIGR02169 799 ELSK-LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL 877
|
250 260
....*....|....*....|
gi 22538393 3419 YKLDLEGQRLQGIMQEFQKQ 3438
Cdd:TIGR02169 878 RDLESRLGDLKKERDELEAQ 897
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
145-352 |
1.66e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 145 YSEQGAQDSPTHLEMMESELAGKQHEIEELNRELEEMRVTYgTEGLQQLQEFEAAIKQRDGIITQLTANLQQARRekdet 224
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEY-NELQAELEALQAEIDKLQAEIAEAEAEIEERRE----- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 225 mreflELTEQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQleeqdhLLEDYQKKKEDFTMQISFLQEK 304
Cdd:COG3883 87 -----ELGERARALYRSGGSVSYLDVLLGSESFSDFLDRLSALSKIADADAD------LLEELKADKAELEAKKAELEAK 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 22538393 305 IKvyEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKL 352
Cdd:COG3883 156 LA--ELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAEL 201
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2182-2427 |
1.70e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2182 QLQAERDAIDRKEKEITNLEEQLEQFrEELENKNEEVQQLHMQLEIQKKE-STTRLQELEQENKLFKDDMEKLglaikES 2260
Cdd:COG4913 229 ALVEHFDDLERAHEALEDAREQIELL-EPIRELAERYAAARERLAELEYLrAALRLWFAQRRLELLEAELEEL-----RA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2261 DAMSTQDQhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQLKittdnkviEEKNELIRDLETQIEclmsdqecvkrNREEE 2340
Cdd:COG4913 303 ELARLEAE----------LERLEARLDALREELDELEAQIR--------GNGGDRLEQLEREIE-----------RLERE 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2341 IEQLNEVIEKLQQELANIGqktsmnaHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQ 2420
Cdd:COG4913 354 LEERERRRARLEALLAALG-------LPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEA 426
|
....*..
gi 22538393 2421 ELFSLKR 2427
Cdd:COG4913 427 EIASLER 433
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1935-2324 |
1.82e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1935 ERQIQEKTDIIDRLEQEL--LCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQL------LQETEKLMKEKL 2006
Cdd:COG4717 87 EEEYAELQEELEELEEELeeLEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLeeleerLEELRELEEELE 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2007 EVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKflDEQAIDREHERDVFQQE 2086
Cdd:COG4717 167 ELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEE--ELEQLENELEAAALEER 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2087 IQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEF--RVRELEQALLVED 2164
Cdd:COG4717 245 LKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQAlpALEELEEEELEEL 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2165 RKHFGAVEAKPELSLEVQLQAERDaIDRKEKEITNLEEQLEQFREELENKN----------EEVQQLHMQLEiqkkestt 2234
Cdd:COG4717 325 LAALGLPPDLSPEELLELLDRIEE-LQELLREAEELEEELQLEELEQEIAAllaeagvedeEELRAALEQAE-------- 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2235 RLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQ-HVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKN 2313
Cdd:COG4717 396 EYQELKEELEELEEQLEELLGELEELLEALDEEElEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELL 475
|
410
....*....|.
gi 22538393 2314 ELIRDLETQIE 2324
Cdd:COG4717 476 QELEELKAELR 486
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
482-645 |
1.95e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 482 TVNEDQIKLMNVAinELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEA 561
Cdd:COG1579 1 AMPEDLRALLDLQ--ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 562 HKSLSTV------EDLKAEIVSASESRKELElKHEAEVTNykiKLEMLEKEKNAVLDRMAEsQEAELERLRTQLlfshEE 635
Cdd:COG1579 79 EEQLGNVrnnkeyEALQKEIESLKRRISDLE-DEILELME---RIEELEEELAELEAELAE-LEAELEEKKAEL----DE 149
|
170
....*....|
gi 22538393 636 ELSKLKEDLE 645
Cdd:COG1579 150 ELAELEAELE 159
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
444-683 |
2.05e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 444 QIVQMKQ-----ELIRQHM---AQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVaINELNIKLQDTNSQKEKLkEE 515
Cdd:COG4913 199 KTQSFKPigdldDFVREYMleePDTFEAADALVEHFDDLERAHEALEDAREQIELLEP-IRELAERYAAARERLAEL-EY 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 516 LGLILEEKCAlQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSL------------STVEDLKAEIVSASESRK 583
Cdd:COG4913 277 LRAALRLWFA-QRRLELLEAELEELRAELARLEAELERLEARLDALREELdeleaqirgnggDRLEQLEREIERLERELE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 584 ELELKHEaevtNYKIKLEMLE----------KEKNAVLDRMAESQEAELERLRTQlLFSHEEELSKLKEDL-EIEHRIN- 651
Cdd:COG4913 356 ERERRRA----RLEALLAALGlplpasaeefAALRAEAAALLEALEEELEALEEA-LAEAEAALRDLRRELrELEAEIAs 430
|
250 260 270
....*....|....*....|....*....|..
gi 22538393 652 IEKLKDNLGIHYKQQIDGLQNEMSQKIETMQF 683
Cdd:COG4913 431 LERRKSNIPARLLALRDALAEALGLDEAELPF 462
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
3278-3417 |
2.07e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3278 AQLSEEQGRNLELQVLLESEKVRIREmsstldRERELHAQLQSSDGtgqsrpplpseDLLKELQKQLEEKHSRIVELLNE 3357
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALRE------ELDELEAQIRGNGG-----------DRLEQLEREIERLERELEERERR 360
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22538393 3358 TEKY-------KLDSLQTRQQMEKDRQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEEKRQQ 3417
Cdd:COG4913 361 RARLeallaalGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAE 427
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
503-783 |
2.17e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.13 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 503 QDTNSQKEKLKEELGLILEEKcALQRQLEDLVEELsfsrEQIQRARQTIAEQESKLNEAHKSLSTV----EDLKAEIVSA 578
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDK-LVQQDLEQTLALL----DKIDRQKEETEQLKQQLAQAPAKLRQAqaelEALKDDNDEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 579 SESRKElelkheaevtnyKIKLEMLEKEKNAVLDRMAESQEA------ELERLRTQLLFSHEEELSKLKEDLEIEHRINi 652
Cdd:PRK11281 114 TRETLS------------TLSLRQLESRLAQTLDQLQNAQNDlaeynsQLVSLQTQPERAQAALYANSQRLQQIRNLLK- 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 653 eKLKDNLGIHYKQQIDGLQNEMSQKietmqfekdNLITKQNQLILEISklkDLQQSLVNSKSEEMTLQINELQKEIEILR 732
Cdd:PRK11281 181 -GGKVGGKALRPSQRVLLQAEQALL---------NAQNDLQRKSLEGN---TQLQDLLQKQRDYLTARIQRLEHQLQLLQ 247
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 22538393 733 QEEKEKgtleqevqelqlKTELLEKQMKEKENdlQEKFAQLEaENSILKDE 783
Cdd:PRK11281 248 EAINSK------------RLTLSEKTVQEAQS--QDEAARIQ-ANPLVAQE 283
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2179-2417 |
2.26e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2179 LEVQLQAERDAIdrkEKEITNLEEQLEQFREELENKNEEVQQLH-----MQLEIQKKESTTRLQELEQ---ENKLFKDDM 2250
Cdd:COG3206 162 LEQNLELRREEA---RKALEFLEEQLPELRKELEEAEAALEEFRqknglVDLSEEAKLLLQQLSELESqlaEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2251 EKLGLAIKESDAMSTQDQHVLFGkfAQIIQEKEVEIDQLNEQVTKLQQQLkiTTDNKVIEEKNELIRDLETQIEclmSDQ 2330
Cdd:COG3206 239 EARLAALRAQLGSGPDALPELLQ--SPVIQQLRAQLAELEAELAELSARY--TPNHPDVIALRAQIAALRAQLQ---QEA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2331 ECVKRNREEEIEQLNEVIEKLQQELANIGQKTSmnahslseeadslkhQLDVVIAEKLALEQQVETANEEMTFMKNVLKE 2410
Cdd:COG3206 312 QRILASLEAELEALQAREASLQAQLAQLEARLA---------------ELPELEAELRRLEREVEVARELYESLLQRLEE 376
|
....*..
gi 22538393 2411 TNFKMNQ 2417
Cdd:COG3206 377 ARLAEAL 383
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1849-2398 |
2.35e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1849 RLQAAVEKLLEAISETSSQLEHAKVTQTELMRESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVIDGYA 1928
Cdd:TIGR00618 358 RDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQ 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1929 DEKTLFERQIQEKTDIIDRLEQELlcasNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVeQQLLQETEKLMKEKlEV 2008
Cdd:TIGR00618 438 RYAELCAAAITCTAQCEKLEKIHL----QESAQSLKEREQQLQTKEQIHLQETRKKAVVLAR-LLELQEEPCPLCGS-CI 511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2009 QCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDReherdvfQQEIQ 2088
Cdd:TIGR00618 512 HPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCD-------NRSKE 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2089 KLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVEDRKHF 2168
Cdd:TIGR00618 585 DIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHA 664
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2169 GAVEAKPELSLEvQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKD 2248
Cdd:TIGR00618 665 LSIRVLPKELLA-SRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQ 743
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2249 DMEKLGLAIKESDAMSTQDQHVLFgkfaqiiqEKEVEIDQLNEQVTKLQQQLKitTDNKVIEEKNELIRDLETQIECLMS 2328
Cdd:TIGR00618 744 SLKELMHQARTVLKARTEAHFNNN--------EEVTAALQTGAELSHLAAEIQ--FFNRLREEDTHLLKTLEAEIGQEIP 813
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2329 DQECVkrnREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKhQLDVVIAEKLALEQQVETAN 2398
Cdd:TIGR00618 814 SDEDI---LNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSK-QLAQLTQEQAKIIQLSDKLN 879
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
2134-2430 |
3.27e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.67 E-value: 3.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2134 QLQRDIQERNEEIEKLEFRVRELEQALLVEDRKHFGAVEAkpELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELen 2213
Cdd:pfam12128 231 QAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSD--ETLIASRQEERQETSAELNQLLRTLDDQWKEKRDEL-- 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2214 kNEEVQQLhmQLEIQKKESttRLQELEQENKLF-KDDMEKLGLAIKESDAMSTQdqhvlfgkfaqiIQEKEVEIDQLNEQ 2292
Cdd:pfam12128 307 -NGELSAA--DAAVAKDRS--ELEALEDQHGAFlDADIETAAADQEQLPSWQSE------------LENLEERLKALTGK 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2293 VTKLQQQLKiTTDNKVIEEKNELIRDLEtqieclmSDQECVKRNREEEIEQLNEVIEKLQQELANI--GQKTSMN--AHS 2368
Cdd:pfam12128 370 HQDVTAKYN-RRRSKIKEQNNRDIAGIK-------DKLAKIREARDRQLAVAEDDLQALESELREQleAGKLEFNeeEYR 441
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22538393 2369 LSEEADSLKHQLDVVIAEKLALEQQvETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERE 2430
Cdd:pfam12128 442 LKSRLGELKLRLNQATATPELLLQL-ENFDERIERAREEQEAANAEVERLQSELRQARKRRD 502
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1849-2441 |
3.60e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 3.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1849 RLQAAVEKLLEAISETSSQLEHAKVTQTELMRESfRQKQEATESLKCQEELRERLHEESRAR-EQLAVELSKAEGVIDGY 1927
Cdd:TIGR02169 382 ETRDELKDYREKLEKLKREINELKRELDRLQEEL-QRLSEELADLNAAIAGIEAKINELEEEkEDKALEIKKQEWKLEQL 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1928 ADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQ--ETEKLMKEK 2005
Cdd:TIGR02169 461 AADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQlgSVGERYATA 540
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2006 LEV----QCQAEKVRDDLQKQvKALEIDVEEQVSRFieleqeknTELMDLRQQNQALEKQLEKMRKFLDeQAIDREHERD 2081
Cdd:TIGR02169 541 IEVaagnRLNNVVVEDDAVAK-EAIELLKRRKAGRA--------TFLPLNKMRDERRDLSILSEDGVIG-FAVDLVEFDP 610
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2082 VFQQEIQKLEQQLKVVPRFQPISEH--QTREVeQLANHLKEKT-------DKCSELLLSKEQLQRDIQERNEEIEKLEfr 2152
Cdd:TIGR02169 611 KYEPAFKYVFGDTLVVEDIEAARRLmgKYRMV-TLEGELFEKSgamtggsRAPRGGILFSRSEPAELQRLRERLEGLK-- 687
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2153 vRELEqALLVEDRKHFGAVEakpelSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKEs 2232
Cdd:TIGR02169 688 -RELS-SLQSELRRIENRLD-----ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE- 759
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2233 ttrLQELEQENKLFKDDMEKLGLAIKESDAMSTQdqhvlfgkfaQIIQEKEVEIDQLNEQVTKLQQQLK-ITTDNKVIEE 2311
Cdd:TIGR02169 760 ---LKELEARIEELEEDLHKLEEALNDLEARLSH----------SRIPEIQAELSKLEEEVSRIEARLReIEQKLNRLTL 826
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2312 KNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTsmnaHSLSEEADSLKHQLDVVIAEKLALE 2391
Cdd:TIGR02169 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL----RDLESRLGDLKKERDELEAQLRELE 902
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 22538393 2392 QQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKREresVEKIQSIPEN 2441
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDP---KGEDEEIPEE 949
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1551-1710 |
3.63e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1551 EMFSKDKTFIVRQSIHDEISVSSMDASRQLMLnEEQLEDMRQELVRQYQEHQQATELLRQAHMRQMERQREDQEQLQEEI 1630
Cdd:pfam17380 384 QMERQQKNERVRQELEAARKVKILEEERQRKI-QQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQV 462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1631 KRLNRQLAQRSSIDNENLVSERERVLLEEL--EALKQLSLAGREKLCCELRNSSTQTQNGNENQGEV-EEQTFKEKELDR 1707
Cdd:pfam17380 463 ERLRQQEEERKRKKLELEKEKRDRKRAEEQrrKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIyEEERRREAEEER 542
|
...
gi 22538393 1708 KPE 1710
Cdd:pfam17380 543 RKQ 545
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
596-776 |
3.89e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 596 YKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDnlgihykqqidgLQNEMS 675
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQK------------LEKRLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 676 QKIETMQFEKDNLITKQNQLILEISKLKDLQQSLvNSKSEEMTLQINELQKEIEI---LRQEEKEKGTLEQEVQELQLKT 752
Cdd:PRK12704 93 QKEENLDRKLELLEKREEELEKKEKELEQKQQEL-EKKEEELEELIEEQLQELERisgLTAEEAKEILLEKVEEEARHEA 171
|
170 180
....*....|....*....|....
gi 22538393 753 ELLEKQMKEKendlqekfAQLEAE 776
Cdd:PRK12704 172 AVLIKEIEEE--------AKEEAD 187
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
2171-2241 |
3.96e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 3.96e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22538393 2171 VEAKPELsLEVQLQAERDaIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQ 2241
Cdd:PRK12704 60 LEAKEEI-HKLRNEFEKE-LRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEK 128
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
323-568 |
3.98e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 3.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 323 EIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGtve 402
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR--- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 403 ELQKRNHKDSQFE--------TDIVQRMEqetqrkleqlraeldemYGQQIVQMKQELIRQHMAQMEEMKTRHKGemena 474
Cdd:COG3883 94 ALYRSGGSVSYLDvllgsesfSDFLDRLS-----------------ALSKIADADADLLEELKADKAELEAKKAE----- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 475 lrsysnitvNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQ 554
Cdd:COG3883 152 ---------LEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAA 222
|
250
....*....|....
gi 22538393 555 ESKLNEAHKSLSTV 568
Cdd:COG3883 223 AAAAAAAAAAAAAA 236
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
313-521 |
4.06e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 43.21 E-value: 4.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 313 DKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTT----ADKLLGELQEQIV-QKNQEIKNMKLELTNSKQKE 387
Cdd:pfam09731 246 DQYKELVASERIVFQQELVSIFPDIIPVLKEDNLLSNDDLNSliahAHREIDQLSKKLAeLKKREEKHIERALEKQKEEL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 388 RQSSEEIKQLMGTVEELQKRNHKDSQFE--TDIVQRMEQETQRKLEQLRAELDEMYGQQIVQMKQELIRQHM-------- 457
Cdd:pfam09731 326 DKLAEELSARLEEVRAADEAQLRLEFERerEEIRESYEEKLRTELERQAEAHEEHLKDVLVEQEIELQREFLqdikekve 405
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22538393 458 -------AQMEEMKTRHKGeMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTN--SQKEKLKEELGLILE 521
Cdd:pfam09731 406 eeragrlLKLNELLANLKG-LEKATSSHSEVEDENRKAQQLWLAVEALRSTLEDGSadSRPRPLVRELKALKE 477
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
197-594 |
4.12e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.96 E-value: 4.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 197 EAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQLQasETLRNSTHSSTAADLLQAKQQILtHQQQ 276
Cdd:pfam07888 37 EECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELK--EELRQSREKHEELEEKYKELSAS-SEEL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 277 LEEQDHLL---EDYQKKKEDFTMQISFLQEKIKVYEMEQDKKVENSNKEEIQ--EKETIIEELNTKIIEEEKKTLELKDK 351
Cdd:pfam07888 114 SEEKDALLaqrAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQrkEEEAERKQLQAKLQQTEEELRSLSKE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 352 LTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNHKDSQFETDIVQRMEQE--TQRK 429
Cdd:pfam07888 194 FQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRdrTQAE 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 430 LEQLRAELDEMYGQqivqmkqelIRQHMAQMEEMKTRHKGEMENALRsysNITVNEDQIKLMNVAINELNIKLQDTNSQK 509
Cdd:pfam07888 274 LHQARLQAAQLTLQ---------LADASLALREGRARWAQERETLQQ---SAEADKDRIEKLSAELQRLEERLQEERMER 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 510 EKLKEELGlileekcalqrqledlvEELSFSREQIQRARQTIAEQESKLNEAHKSlstVEDLKAEIVSASESRKELELKH 589
Cdd:pfam07888 342 EKLEVELG-----------------REKDCNRVQLSESRRELQELKASLRVAQKE---KEQLQAEKQELLEYIRQLEQRL 401
|
....*
gi 22538393 590 EAEVT 594
Cdd:pfam07888 402 ETVAD 406
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1992-2587 |
4.16e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 4.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1992 QQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFL-- 2069
Cdd:pfam15921 116 QTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILvd 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2070 -DEQAIDREHERDV-----FQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLskeqlqrdiQERN 2143
Cdd:pfam15921 196 fEEASGKKIYEHDSmstmhFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLL---------QQHQ 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2144 EEIEKLeFRVRELEQALLVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREEL-------ENKNE 2216
Cdd:pfam15921 267 DRIEQL-ISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELreakrmyEDKIE 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2217 EVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKL--GLAIKESDAMSTQDQHVLFGKF----AQIIQEKEVEIDQLN 2290
Cdd:pfam15921 346 ELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLlaDLHKREKELSLEKEQNKRLWDRdtgnSITIDHLRRELDDRN 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2291 EQVTKLQQQLKITtdnkvieeKNELIRDLETQIECLMSDQECVKR--NREEEIEQLNEVIEKLQQELANIGQKTSMNAHS 2368
Cdd:pfam15921 426 MEVQRLEALLKAM--------KSECQGQMERQMAAIQGKNESLEKvsSLTAQLESTKEMLRKVVEELTAKKMTLESSERT 497
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2369 LSEEADSLKHQldvviaeklalEQQVETANEEMTFMKNvlketnfKMNQLTQELFSLKRERESVEKIQSIPEnsvNVAID 2448
Cdd:pfam15921 498 VSDLTASLQEK-----------ERAIEATNAEITKLRS-------RVDLKLQELQHLKNEGDHLRNVQTECE---ALKLQ 556
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2449 HLSKDKpelevvLTEDALKSLENQTYFKSFEENGKGSIinlETRLLQLESTVSAKDLELtqcyKQIKDMQEQGQFETEML 2528
Cdd:pfam15921 557 MAEKDK------VIEILRQQIENMTQLVGQHGRTAGAM---QVEKAQLEKEINDRRLEL----QEFKILKDKKDAKIREL 623
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 22538393 2529 QKKIVNLQKiveEKVAAALVSQIQLEAVQEYAkfcQDNQTISSEPeRTNIQNLNQLRED 2587
Cdd:pfam15921 624 EARVSDLEL---EKVKLVNAGSERLRAVKDIK---QERDQLLNEV-KTSRNELNSLSED 675
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
2118-2361 |
4.32e-03 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 42.49 E-value: 4.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2118 LKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVEDRKHFGAVEAKPELSLEVQ-LQAERDAIDR---- 2192
Cdd:pfam15905 61 LKKKSQKNLKESKDQKELEKEIRALVQERGEQDKRLQALEEELEKVEAKLNAAVREKTSLSASVAsLEKQLLELTRvnel 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2193 ---------KEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQE--------------LEQENKLFKDD 2249
Cdd:pfam15905 141 lkakfsedgTQKKMSSLSMELMKLRNKLEAKMKEVMAKQEGMEGKLQVTQKNLEHskgkvaqleeklvsTEKEKIEEKSE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2250 MEKLGLAIKESDAMSTQdqhvlFGKFAQIIQEKEVEIDQLNEQVTKLQQQL--KITTDNKVIEEKNELIRDLETQIECLM 2327
Cdd:pfam15905 221 TEKLLEYITELSCVSEQ-----VEKYKLDIAQLEELLKEKNDEIESLKQSLeeKEQELSKQIKDLNEKCKLLESEKEELL 295
|
250 260 270
....*....|....*....|....*....|....
gi 22538393 2328 SDQECVKRNREEEIEQLNEVIEKLQQELANIGQK 2361
Cdd:pfam15905 296 REYEEKEQTLNAELEELKEKLTLEEQEHQKLQQK 329
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
311-432 |
4.67e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.89 E-value: 4.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 311 EQDKKVENSNKEEIqekETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELtnskqkERQS 390
Cdd:PRK00409 505 EEAKKLIGEDKEKL---NELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA------EKEA 575
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 22538393 391 SEEIKQLMGTVEELQKRNHKDSQFETDIVQRME-QETQRKLEQ 432
Cdd:PRK00409 576 QQAIKEAKKEADEIIKELRQLQKGGYASVKAHElIEARKRLNK 618
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
401-656 |
4.84e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 4.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 401 VEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELdemygqqivqmkqelirqhmaqmEEMKTRHkgemeNALRSYSN 480
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAAL-----------------------EEFRQKN-----GLVDLSEE 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 481 ITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQledlvEELSFSREQIQRARQTIAEQESKLNE 560
Cdd:COG3206 214 AKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQS-----PVIQQLRAQLAELEAELAELSARYTP 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 561 AHkslSTVEDLKAEIVSA----SESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAE--SQEAELERLRTQLLFSHE 634
Cdd:COG3206 289 NH---PDVIALRAQIAALraqlQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAElpELEAELRRLEREVEVARE 365
|
250 260
....*....|....*....|....
gi 22538393 635 --EELSKLKEDLEIEHRINIEKLK 656
Cdd:COG3206 366 lyESLLQRLEEARLAEALTVGNVR 389
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
214-548 |
4.85e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 4.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 214 LQQARREKDETMREFLELTEQSQKLQIQFQQLqaSETLRNSTHSSTAADLLQAKQQIlthQQQLEEQDHLLEDYQKKKED 293
Cdd:PRK04863 788 IEQLRAEREELAERYATLSFDVQKLQRLHQAF--SRFIGSHLAVAFEADPEAELRQL---NRRRVELERALADHESQEQQ 862
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 294 FTMQISFLQEKIK-VYEMEQDKKV--ENSNKEEIQEKETIIEEL--NTKIIEEEKKTLELKDKLTTAdklLGELQEQIVQ 368
Cdd:PRK04863 863 QRSQLEQAKEGLSaLNRLLPRLNLlaDETLADRVEEIREQLDEAeeAKRFVQQHGNALAQLEPIVSV---LQSDPEQFEQ 939
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 369 KNQEIKNMKLELTNSKQKERQSSEEIkqlmgtveelQKRNHkdsqFETDIVQRMEQETQRKLEQLRAELDEMYgQQIVQM 448
Cdd:PRK04863 940 LKQDYQQAQQTQRDAKQQAFALTEVV----------QRRAH----FSYEDAAEMLAKNSDLNEKLRQRLEQAE-QERTRA 1004
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 449 KQELiRQHMAQMEEMKTRH---------KGEMENAL-RSYSNITVNEDQIKLMNVAI--NELNIKLQDTNSQKEKLKEEL 516
Cdd:PRK04863 1005 REQL-RQAQAQLAQYNQVLaslkssydaKRQMLQELkQELQDLGVPADSGAEERARArrDELHARLSANRSRRNQLEKQL 1083
|
330 340 350
....*....|....*....|....*....|..
gi 22538393 517 GLILEEKCALQRQLEDLVEELSFSREQIQRAR 548
Cdd:PRK04863 1084 TFCEAEMDNLTKKLRKLERDYHEMREQVVNAK 1115
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1938-2710 |
5.00e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 5.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1938 IQEKTDIIDRLEQELLCASN----RLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQcQAE 2013
Cdd:TIGR02169 193 IDEKRQQLERLRREREKAERyqalLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLE-EIE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2014 KVRDDLQKQVKALEID-----------VEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMR---KFLDEQAIDREHE 2079
Cdd:TIGR02169 272 QLLEELNKKIKDLGEEeqlrvkekigeLEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLaeiEELEREIEEERKR 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2080 RDVFQQEIQKLEQQLKVVprfqpisehqTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQA 2159
Cdd:TIGR02169 352 RDKLTEEYAELKEELEDL----------RAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2160 LLVEDRKHFGAVEAKPELslEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKE---STTRL 2236
Cdd:TIGR02169 422 LADLNAAIAGIEAKINEL--EEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRElaeAEAQA 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2237 QELEQENKLFKDDMEKLGLAIKEsdamstqdqhvLFGKFAQIIQEKE------------------VEIDQLNEQVTKLQQ 2298
Cdd:TIGR02169 500 RASEERVRGGRAVEEVLKASIQG-----------VHGTVAQLGSVGEryataievaagnrlnnvvVEDDAVAKEAIELLK 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2299 QLK----------------------------------ITTDNK------------VIEEKNELIRDLETQIECLMSDQE- 2331
Cdd:TIGR02169 569 RRKagratflplnkmrderrdlsilsedgvigfavdlVEFDPKyepafkyvfgdtLVVEDIEAARRLMGKYRMVTLEGEl 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2332 ------------------CVKRNREEEIEQLNEVIEKLQQELANIGQKTSmnahSLSEEADSLKHQLDVVIAEKLALEQQ 2393
Cdd:TIGR02169 649 feksgamtggsraprggiLFSRSEPAELQRLRERLEGLKRELSSLQSELR----RIENRLDELSQELSDASRKIGEIEKE 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2394 VETANEEMTFMKNVLKETNFKMNQLTQELFSLKREresvekiqsipensvnvaIDHLSKDKPELEVVLT--EDALKSLEn 2471
Cdd:TIGR02169 725 IEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE------------------LKELEARIEELEEDLHklEEALNDLE- 785
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2472 QTYFKSFEENGKGSIINLETRLLQLESTVSAKDLELtqcykqikdmqEQGQFETEMLQKKIVNLQKIVEEkvaaalvSQI 2551
Cdd:TIGR02169 786 ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKL-----------NRLTLEKEYLEKEIQELQEQRID-------LKE 847
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2552 QLEAVQEYakfcQDNQTISSEPERTNIQNLnQLREDELGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEKNVLEK 2631
Cdd:TIGR02169 848 QIKSIEKE----IENLNGKKEELEEELEEL-EAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL 922
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2632 EKKLLELQKLLEgnEKKQREKEKKRSPQDVEVLKTTTELFHSNEEsgffnELEALraESVATKAE---------LASYKE 2702
Cdd:TIGR02169 923 KAKLEALEEELS--EIEDPKGEDEEIPEEELSLEDVQAELQRVEE-----EIRAL--EPVNMLAIqeyeevlkrLDELKE 993
|
....*...
gi 22538393 2703 KAEKLQEE 2710
Cdd:TIGR02169 994 KRAKLEEE 1001
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
2140-2404 |
5.29e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.61 E-value: 5.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2140 QERNEEIEKLEFRVRELEQALlVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEqleqfreELENKNEEVQ 2219
Cdd:PRK05771 39 ELSNERLRKLRSLLTKLSEAL-DKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEK-------EIKELEEEIS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2220 QLhmqleiqkkesTTRLQELEQEnklfKDDMEKLG-LAIKESDAMSTQDQHVLFGK-FAQIIQEKEVEIDQLNEQVTKLQ 2297
Cdd:PRK05771 111 EL-----------ENEIKELEQE----IERLEPWGnFDLDLSLLLGFKYVSVFVGTvPEDKLEELKLESDVENVEYISTD 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2298 QQLK---ITTDNKVIEEKNELIRDLETQI----ECLMSDQecVKRNREEEIEQLNEVIEKLQQELANIGQKtsmnahsls 2370
Cdd:PRK05771 176 KGYVyvvVVVLKELSDEVEEELKKLGFERleleEEGTPSE--LIREIKEELEEIEKERESLLEELKELAKK--------- 244
|
250 260 270
....*....|....*....|....*....|....
gi 22538393 2371 eEADSLKHQLDVVIAEKLALEQQVETANEEMTFM 2404
Cdd:PRK05771 245 -YLEELLALYEYLEIELERAEALSKFLKTDKTFA 277
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
3269-3436 |
5.45e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 5.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3269 IESQRMLYDAQLSEEQGRNLELQVLLESEKVRIREMSSTLDRERELHAQLQSSDGTGQSRPPL-PSEDLLKELQKQLEEK 3347
Cdd:COG3206 210 LSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLaELEAELAELSARYTPN 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3348 HSRIVELLNEtekykLDSLqtRQQMEKDRQVHRKTLQTEQEAntegqkkmheLQSKVEDLQRQLEEKRQQVYKLDLEGQR 3427
Cdd:COG3206 290 HPDVIALRAQ-----IAAL--RAQLQQEAQRILASLEAELEA----------LQAREASLQAQLAQLEARLAELPELEAE 352
|
....*....
gi 22538393 3428 LQGIMQEFQ 3436
Cdd:COG3206 353 LRRLEREVE 361
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
155-769 |
5.58e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.97 E-value: 5.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 155 THLEMMESELAGKQHEIEELNRELEEMrvtygtEGLQQLQEFEaaikqrdgiITQLTANLQQARREK---DETMREFLEL 231
Cdd:PRK01156 183 SNIDYLEEKLKSSNLELENIKKQIADD------EKSHSITLKE---------IERLSIEYNNAMDDYnnlKSALNELSSL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 232 TEQSQKLQIQFQQLQASetlrnsthsstaadlLQAKQQILTHQQQLEEQDHLLEDYQ--KKKEDFTMQISFLQEKIKVYE 309
Cdd:PRK01156 248 EDMKNRYESEIKTAESD---------------LSMELEKNNYYKELEERHMKIINDPvyKNRNYINDYFKYKNDIENKKQ 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 310 MEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELkdklttaDKLLGELQEQIVQKNQEIKNMKleltNSKQKERQ 389
Cdd:PRK01156 313 ILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDL-------NNQILELEGYEMDYNSYLKSIE----SLKKKIEE 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 390 SSEEIKQLMGTVEELQKRNHKDSqfetDIVQRMEQETQRKLEQLRAELDEMygqqivQMKQELIRQHMAQMEEMKTRHKG 469
Cdd:PRK01156 382 YSKNIERMSAFISEILKIQEIDP----DAIKKELNEINVKLQDISSKVSSL------NQRIRALRENLDELSRNMEMLNG 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 470 EmenALRSYSNITVNEDQIklmNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDL----VEELSFSREQIQ 545
Cdd:PRK01156 452 Q---SVCPVCGTTLGEEKS---NHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLeseeINKSINEYNKIE 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 546 RARQTIAEQESKLNEAhkslstvedlkaeivsasesrKELELKHEAEVTNYK-IKLEMLEKEKNAVLDRMAESQEAELER 624
Cdd:PRK01156 526 SARADLEDIKIKINEL---------------------KDKHDKYEEIKNRYKsLKLEDLDSKRTSWLNALAVISLIDIET 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 625 LRTQllfsHEEELSKLKEDLEIEHRINIEKLKDNLGI-HYKQQIDGLQNEMSQKIETMQFEK---DNLITKQNQLILEIS 700
Cdd:PRK01156 585 NRSR----SNEIKKQLNDLESRLQEIEIGFPDDKSYIdKSIREIENEANNLNNKYNEIQENKiliEKLRGKIDNYKKQIA 660
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22538393 701 KLKDLQQSL--VNSKSEEMTLQINELQKEIEILRQEEKEKgtlEQEVQELQLKTELLEKQMKEKENDLQEK 769
Cdd:PRK01156 661 EIDSIIPDLkeITSRINDIEDNLKKSRKALDDAKANRARL---ESTIEILRTRINELSDRINDINETLESM 728
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1976-2298 |
5.84e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 5.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1976 LSRQKEAMKAEAGPVEQQLLQETEKL--MKEKLEVQCQAEKVRDDLQKqvkaLEIDVEEQVsrfiELEQEKNTELMDLRQ 2053
Cdd:PRK04863 312 MARELAELNEAESDLEQDYQAASDHLnlVQTALRQQEKIERYQADLEE----LEERLEEQN----EVVEEADEQQEENEA 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2054 QNQALEKQLEKMRKFLD--EQAIDREHERDV-FQQEIQKLE--QQLKVVP------------RFQPISEHQTREVEQLAN 2116
Cdd:PRK04863 384 RAEAAEEEVDELKSQLAdyQQALDVQQTRAIqYQQAVQALEraKQLCGLPdltadnaedwleEFQAKEQEATEELLSLEQ 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2117 HL------KEKTDKCSELLLS--------------KEQLQRDIQERN--EEIEKLEFRVRELEQALLVEDRKHFGAVEAK 2174
Cdd:PRK04863 464 KLsvaqaaHSQFEQAYQLVRKiagevsrseawdvaRELLRRLREQRHlaEQLQQLRMRLSELEQRLRQQQRAERLLAEFC 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2175 PELSLEVQLQAERDAidrkekeitnLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQ---ENKLFKDDME 2251
Cdd:PRK04863 544 KRLGKNLDDEDELEQ----------LQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAArapAWLAAQDALA 613
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 22538393 2252 KL----GLAIKESDAMSTQDQHVLFGKFAQIIQEKEVE--IDQLNEQVTKLQQ 2298
Cdd:PRK04863 614 RLreqsGEEFEDSQDVTEYMQQLLERERELTVERDELAarKQALDEEIERLSQ 666
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
147-475 |
5.88e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 5.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 147 EQGAQDSPTHLEMMESELAGKQHEIEELNRELEEMRVTYGTEGLQQLQEFEAAIKQrdgiitqltaNLQQARREKDETMR 226
Cdd:TIGR00618 624 EQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQ----------LALQKMQSEKEQLT 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 227 EFLELTEQSQ-KLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLlEDYQKKKEDFTMQISFLQEKI 305
Cdd:TIGR00618 694 YWKEMLAQCQtLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQ-ARTVLKARTEAHFNNNEEVTA 772
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 306 KVYEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQ-------EIKNMKL 378
Cdd:TIGR00618 773 ALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEeksatlgEITHQLL 852
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 379 ELTNSKQKERQSSEEIKQLMGTVEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAeldemygqqivqmKQELIRQHMA 458
Cdd:TIGR00618 853 KYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQFDGDALIKFLHEITLYANVRLA-------------NQSEGRFHGR 919
|
330
....*....|....*..
gi 22538393 459 QMEEMKTRHKGEMENAL 475
Cdd:TIGR00618 920 YADSHVNARKYQGLALL 936
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
347-804 |
6.07e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.50 E-value: 6.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 347 ELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELtNSKQKERQSSEEIKQLMGTVEElqkrnhKDSQFETdiVQRMEQET 426
Cdd:pfam10174 182 ERTRRIAEAEMQLGHLEVLLDQKEKENIHLREEL-HRRNQLQPDPAKTKALQTVIEM------KDTKISS--LERNIRDL 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 427 QRKLEQLRAELDEMYGQQIVQMKQ-ELIRQH-------MAQMEEMKTRHKGEM---ENALRSYSNitVNEDQIKLMNVAI 495
Cdd:pfam10174 253 EDEVQMLKTNGLLHTEDREEEIKQmEVYKSHskfmknkIDQLKQELSKKESELlalQTKLETLTN--QNSDCKQHIEVLK 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 496 NELNIKLQDTNSQKEKLkEELGLILEEKCAL----QRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDL 571
Cdd:pfam10174 331 ESLTAKEQRAAILQTEV-DALRLRLEEKESFlnkkTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQ 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 572 KAEIVSASESRKELELKHEAEVTNYKIKLEMLEK---EKNAVLDRMAESQEAElERLRTQLLFSHEEELSKLKEDLEIEH 648
Cdd:pfam10174 410 LRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEalsEKERIIERLKEQRERE-DRERLEELESLKKENKDLKEKVSALQ 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 649 RINIEK------LKDNL------GIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILE------ISKLKDLQQSlV 710
Cdd:pfam10174 489 PELTEKesslidLKEHAsslassGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVrtnpeiNDRIRLLEQE-V 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 711 NSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDM 790
Cdd:pfam10174 568 ARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDN 647
|
490
....*....|....
gi 22538393 791 LKIHTPVSQEERLI 804
Cdd:pfam10174 648 LADNSQQLQLEELM 661
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
2113-2339 |
6.36e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.19 E-value: 6.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2113 QLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALlvedrkhfgaVEAKPELSlevQLQAERDAIDR 2192
Cdd:pfam07888 35 RLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRV----------AELKEELR---QSREKHEELEE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2193 KEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVL- 2271
Cdd:pfam07888 102 KYKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLq 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2272 ------------FGKFAQIIQEKEVEIDQLNEQVTKLQQqlKITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNREE 2339
Cdd:pfam07888 182 qteeelrslskeFQELRNSLAQRDTQVLQLQDTITTLTQ--KLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEE 259
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
190-400 |
6.77e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.59 E-value: 6.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 190 LQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQ--------------------KLQIQFQQLQA-- 247
Cdd:PRK11281 65 LEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDeetretlstlslrqlesrlaQTLDQLQNAQNdl 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 248 ---------------------------SETLRNSTHSSTAA---------DLLQAKQ-----QILTHQQQLEEQDHLLED 286
Cdd:PRK11281 145 aeynsqlvslqtqperaqaalyansqrLQQIRNLLKGGKVGgkalrpsqrVLLQAEQallnaQNDLQRKSLEGNTQLQDL 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 287 YQKKKEDFTMQISFLQEKIKVY-EMEQDKKVENSNK-----EEIQEKETIIEelNTKIIEEEKKTLELKDKLTTADKLLG 360
Cdd:PRK11281 225 LQKQRDYLTARIQRLEHQLQLLqEAINSKRLTLSEKtvqeaQSQDEAARIQA--NPLVAQELEINLQLSQRLLKATEKLN 302
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 22538393 361 ELqeqiVQKNQEIKNMkleLTNSKQKERQSSEEIKQLMGT 400
Cdd:PRK11281 303 TL----TQQNLRVKNW---LDRLTQSERNIKEQISVLKGS 335
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1955-2218 |
7.14e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 7.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1955 ASNRLQELEAEQQQIqeerellsrqkeamkaeagpveQQLLQETEKLMKeklevqcQAEKVRDDLQKQVKALEIDVEEQV 2034
Cdd:COG4942 18 QADAAAEAEAELEQL----------------------QQEIAELEKELA-------ALKKEEKALLKQLAALERRIAALA 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2035 SRFIELEQE---KNTELMDLRQQNQALEKQLEKMRKFLDEQ--AIDREHERD-----VFQQEIQKLEQQLKVvprFQPIS 2104
Cdd:COG4942 69 RRIRALEQElaaLEAELAELEKEIAELRAELEAQKEELAELlrALYRLGRQPplallLSPEDFLDAVRRLQY---LKYLA 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2105 EHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALlvedrkhfgaveakpeLSLEVQLQ 2184
Cdd:COG4942 146 PARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLL----------------ARLEKELA 209
|
250 260 270
....*....|....*....|....*....|....
gi 22538393 2185 AERDAIDRKEKEITNLEEQLEQFREELENKNEEV 2218
Cdd:COG4942 210 ELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
503-646 |
7.72e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 42.35 E-value: 7.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 503 QDTNSQKeKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDlkaEIVSASESR 582
Cdd:pfam05911 678 LKTEENK-RLKEEFEQLKSEKENLEVELASCTENLESTKSQLQESEQLIAELRSELASLKESNSLAET---QLKCMAESY 753
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22538393 583 KELELKH---EAEVTNYKIKLEMLEKE----KNAVLDRMAESQEAE--LERLRTQ--LLFSHEEELSKLKEDLEI 646
Cdd:pfam05911 754 EDLETRLtelEAELNELRQKFEALEVEleeeKNCHEELEAKCLELQeqLERNEKKesSNCDADQEDKKLQQEKEI 828
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
3100-3435 |
8.50e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 8.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3100 LKREQESEKPSQELLEYNIQQKQSQMLEMQVELSSMKDRATELQE---------QLSSEKMVVAELKSELAQTKLELETT 3170
Cdd:PRK03918 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElkekaeeyiKLSEFYEEYLDELREIEKRLSRLEEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3171 LKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLGRSEERDKEELEDLKFSLESQKQRNLQ 3250
Cdd:PRK03918 323 INGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEE 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3251 LNLLLEQQKQLLNESQQKIESQRM-------------LYDAQLSEEQGRNLELQVLLESEKVRiREMSSTLDRERELHAQ 3317
Cdd:PRK03918 403 IEEEISKITARIGELKKEIKELKKaieelkkakgkcpVCGRELTEEHRKELLEEYTAELKRIE-KELKEIEEKERKLRKE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 3318 LQSSDGTGQSRPPLPSEDLLKELQKQLEEKHSRIV--ELLNETEKY-----KLDSLQTRQQMEKDRQVHRKTLQTEQEan 3390
Cdd:PRK03918 482 LRELEKVLKKESELIKLKELAEQLKELEEKLKKYNleELEKKAEEYeklkeKLIKLKGEIKSLKKELEKLEELKKKLA-- 559
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 22538393 3391 tEGQKKMHELQSKVEDLQRQLEEKR-QQVYKLDLEGQRLQGIMQEF 3435
Cdd:PRK03918 560 -ELEKKLDELEEELAELLKELEELGfESVEELEERLKELEPFYNEY 604
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
164-973 |
8.66e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 8.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 164 LAGKQHEIEELNRELEEMRVT--YGT-EGLQQLQEF-EAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQ 239
Cdd:TIGR00606 274 LKSRKKQMEKDNSELELKMEKvfQGTdEQLNDLYHNhQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQ 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 240 IQFQQLQASETLRNSthsstaadllqakqqilthqQQLEEQDHLLEDYQKKKEDFTMQISFLQEkIKVYEMEQDKKVENS 319
Cdd:TIGR00606 354 LQADRHQEHIRARDS--------------------LIQSLATRLELDGFERGPFSERQIKNFHT-LVIERQEDEAKTAAQ 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 320 NKEEIQEKETIIEELNTKIieeekktlelKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMG 399
Cdd:TIGR00606 413 LCADLQSKERLKQEQADEI----------RDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRK 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 400 TVEELQKRNhKDSQFETDI-----VQRMEQETQRKLEQLRAELDEMYGQQIVQMKQELIRQHMA----QMEEMKTRHKGE 470
Cdd:TIGR00606 483 AERELSKAE-KNSLTETLKkevksLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMdkdeQIRKIKSRHSDE 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 471 MENALRSYSNITVNED-------QIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQL------EDLVEEL 537
Cdd:TIGR00606 562 LTSLLGYFPNKKQLEDwlhskskEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLfdvcgsQDEESDL 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 538 SFSREQIQRARQTIAEQESKLNEAHKSLSTVED--------------LKAEIVSASESRKELELKHEAEVTNYKIKLEML 603
Cdd:TIGR00606 642 ERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDenqsccpvcqrvfqTEAELQEFISDLQSKLRLAPDKLKSTESELKKK 721
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 604 EKEKNAVLDrMAESQEAELERLRTQL------LFSHEEELSKLKEDLEIEHRI---------NIEKLKDNLGIHYKQQID 668
Cdd:TIGR00606 722 EKRRDEMLG-LAPGRQSIIDLKEKEIpelrnkLQKVNRDIQRLKNDIEEQETLlgtimpeeeSAKVCLTDVTIMERFQME 800
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 669 GLQNEMSQKIETMQFEKDNLITKQNQLILEISKlKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQEL 748
Cdd:TIGR00606 801 LKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQE-KQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTN 879
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 749 QLKTELLEKQMKEKENDLQEKFAQL-EAENSILKDEKKTLEDMLKIHTPVSQEErlifldSIKSKSKDSVwekeieilie 827
Cdd:TIGR00606 880 LQRRQQFEEQLVELSTEVQSLIREIkDAKEQDSPLETFLEKDQQEKEELISSKE------TSNKKAQDKV---------- 943
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 828 enedlkqqciqlnEEIEKQRNTFSFAEKNFEVNYQELQEEYaclLKVKDDLEDSKNKQELEYKSKLKALNEELHLQRINP 907
Cdd:TIGR00606 944 -------------NDIKEKVKNIHGYMKDIENKIQDGKDDY---LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDI 1007
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22538393 908 TTVKMKSSVFDEDKTFVAETLEMGEVVEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQKHGEI 973
Cdd:TIGR00606 1008 DTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLA 1073
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
2279-2431 |
9.13e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 9.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2279 IQEKEVEIDQLNEQVTKLQQQLK-----ITTDNKVIEEKNELIRDLETQIeclmsdqecvkRNREEEIEQLNEVIEKLQQ 2353
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAeledeLAALEARLEAAKTELEDLEKEI-----------KRLELEIEEVEARIKKYEE 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22538393 2354 ELANIgqktsmnahSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERES 2431
Cdd:COG1579 81 QLGNV---------RNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE 149
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
666-1241 |
9.38e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 9.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 666 QIDGLQNEMSQkIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEekeKGTLEQEV 745
Cdd:pfam12128 242 EFTKLQQEFNT-LESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGE---LSAADAAV 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 746 QELQLKTELLEKQMKEKENDLQEKFAQ-LEAENSI---LKDEKKTLEDMLKIHTPVSQE-ERLIFLDSIKSKSK------ 814
Cdd:pfam12128 318 AKDRSELEALEDQHGAFLDADIETAAAdQEQLPSWqseLENLEERLKALTGKHQDVTAKyNRRRSKIKEQNNRDiagikd 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 815 --DSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEYACLLKVKDDLEDSKNKQELeyksk 892
Cdd:pfam12128 398 klAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDER----- 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 893 LKALNEELHLQRINPTTVKMKSSVFDedktfvaetlemgevveKDTTELMEKLEVTKREKLELSQRLSDLSEQL-KQKHG 971
Cdd:pfam12128 473 IERAREEQEAANAEVERLQSELRQAR-----------------KRRDQASEALRQASRRLEERQSALDELELQLfPQAGT 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 972 EISFLNEEVKSLKQEKEQVSLRcreleiiinhnraENVQSCDtqvsslLDGVVTMTSRGAEGSVSKVNKSFgeeSKIMVE 1051
Cdd:pfam12128 536 LLHFLRKEAPDWEQSIGKVISP-------------ELLHRTD------LDPEVWDGSVGGELNLYGVKLDL---KRIDVP 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1052 DKVSFENMTVGEESKQEQLILDHLPSVTKESSLRATQPSENDKLQKELNVLKS--EQNDLRLQmeaqriclslvysthvd 1129
Cdd:pfam12128 594 EWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTalKNARLDLR----------------- 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 1130 QVREYMENEKDKALCSLKEELIFAQEE--KIKELQKIHQLELQTMKtQETGDEGKPLHLLIGKLQKAVSEECSYFLQTLC 1207
Cdd:pfam12128 657 RLFDEKQSEKDKKNKALAERKDSANERlnSLEAQLKQLDKKHQAWL-EEQKEQKREARTEKQAYWQVVEGALDAQLALLK 735
|
570 580 590
....*....|....*....|....*....|....
gi 22538393 1208 SVLGEYYTpALKCEVNAEDKENSGDYISENEDPE 1241
Cdd:pfam12128 736 AAIAARRS-GAKAELKALETWYKRDLASLGVDPD 768
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
2139-2361 |
9.50e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.92 E-value: 9.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2139 IQERNEEIEKLEFRVRELEQALLVEDRkhfgaveakpelSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEV 2218
Cdd:PHA02562 176 IRELNQQIQTLDMKIDHIQQQIKTYNK------------NIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDEL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2219 QQLHMQLEiqkkESTTRLQELEQENKLFKDDMEKLGLAIK-----------------ESDAMS--TQDQHVLFGKFAQI- 2278
Cdd:PHA02562 244 LNLVMDIE----DPSAALNKLNTAAAKIKSKIEQFQKVIKmyekggvcptctqqiseGPDRITkiKDKLKELQHSLEKLd 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 2279 --IQEKEVEIDQLNEQVTKLQQ-QLKITTDNKVIEEKNELIRDLETQIECLMSDqecvKRNREEEIEQLNEVIEKLQQEL 2355
Cdd:PHA02562 320 taIDELEEIMDEFNEQSKKLLElKNKISTNKQSLITLVDKAKKVKAAIEELQAE----FVDNAEELAKLQDELDKIVKTK 395
|
....*.
gi 22538393 2356 ANIGQK 2361
Cdd:PHA02562 396 SELVKE 401
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
273-847 |
9.50e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.20 E-value: 9.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 273 HQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMeqdKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKL 352
Cdd:PRK01156 213 HSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDM---KNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDP 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 353 TTADKllGELQEQIVQKNQeIKNMKLELTNSKQKERQSSEEIKQLmgtvEELQKRNhkdSQFEtdivqrmeqETQRKLEQ 432
Cdd:PRK01156 290 VYKNR--NYINDYFKYKND-IENKKQILSNIDAEINKYHAIIKKL----SVLQKDY---NDYI---------KKKSRYDD 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 433 LRAELDEMYGQQI-VQMKQELIRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIklmNVAINELNIKLQDTNSQKEK 511
Cdd:PRK01156 351 LNNQILELEGYEMdYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAI---KKELNEINVKLQDISSKVSS 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 512 LKEELGLILEEKCALQRQLEDL-------VEELSFSREQIQRARQTIAEQESKLNEAHKSLST-VEDLKAEIVSASESRK 583
Cdd:PRK01156 428 LNQRIRALRENLDELSRNMEMLngqsvcpVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIeVKDIDEKIVDLKKRKE 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 584 ELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAEL--ERLRTQLLFSHEEELSKLKEDLeiehrINIEKLKDNLGI 661
Cdd:PRK01156 508 YLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDkyEEIKNRYKSLKLEDLDSKRTSW-----LNALAVISLIDI 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 662 hykQQIDGLQNEMSQKIetmqfekDNLITKQNQLILEISKLKDLQQSlvnskseemtlQINELQKEIEILRQEEKEKGTL 741
Cdd:PRK01156 583 ---ETNRSRSNEIKKQL-------NDLESRLQEIEIGFPDDKSYIDK-----------SIREIENEANNLNNKYNEIQEN 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538393 742 EQEVQELQLKTELLEKQ---MKEKENDLQEKFAQLEAENSILKDEKKTLEDmlkihtpvsqeerlifldsikSKSKDSVW 818
Cdd:PRK01156 642 KILIEKLRGKIDNYKKQiaeIDSIIPDLKEITSRINDIEDNLKKSRKALDD---------------------AKANRARL 700
|
570 580
....*....|....*....|....*....
gi 22538393 819 EKEIEILIEENEDLKQQCIQLNEEIEKQR 847
Cdd:PRK01156 701 ESTIEILRTRINELSDRINDINETLESMK 729
|
|
| |
