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retrotransposon Gag-like protein 3 [Homo sapiens]
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
Retrotrans_gag super family | cl46289 | Retrotransposon gag protein; Gag or Capsid-like proteins from LTR retrotransposons. There is a ... |
237-316 | 3.33e-10 | |||
Retrotransposon gag protein; Gag or Capsid-like proteins from LTR retrotransposons. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved. The actual alignment was detected with superfamily member pfam16297: Pssm-ID: 480629 Cd Length: 112 Bit Score: 57.23 E-value: 3.33e-10
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PRK10263 super family | cl35903 | DNA translocase FtsK; Provisional |
70-179 | 4.15e-05 | |||
DNA translocase FtsK; Provisional The actual alignment was detected with superfamily member PRK10263: Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 46.23 E-value: 4.15e-05
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PTZ00368 super family | cl31762 | universal minicircle sequence binding protein (UMSBP); Provisional |
419-461 | 5.35e-04 | |||
universal minicircle sequence binding protein (UMSBP); Provisional The actual alignment was detected with superfamily member PTZ00368: Pssm-ID: 173561 [Multi-domain] Cd Length: 148 Bit Score: 40.18 E-value: 5.35e-04
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Name | Accession | Description | Interval | E-value | |||
DUF4939 | pfam16297 | Domain of unknown function (DUF4939); This family consists of uncharacterized proteins around ... |
237-316 | 3.33e-10 | |||
Domain of unknown function (DUF4939); This family consists of uncharacterized proteins around 110 residues in length and is mainly found in various mammalia species. LDOC1, a member of this family and a novel MZF-1-interacting protein, inhibits NF-kappaB activation and relates with cancer and some other diseases. But the specific function of this family is still unknown. Pssm-ID: 465086 Cd Length: 112 Bit Score: 57.23 E-value: 3.33e-10
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PRK10263 | PRK10263 | DNA translocase FtsK; Provisional |
70-179 | 4.15e-05 | |||
DNA translocase FtsK; Provisional Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 46.23 E-value: 4.15e-05
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PTZ00368 | PTZ00368 | universal minicircle sequence binding protein (UMSBP); Provisional |
419-461 | 5.35e-04 | |||
universal minicircle sequence binding protein (UMSBP); Provisional Pssm-ID: 173561 [Multi-domain] Cd Length: 148 Bit Score: 40.18 E-value: 5.35e-04
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ZnF_C2HC | smart00343 | zinc finger; |
445-459 | 4.64e-03 | |||
zinc finger; Pssm-ID: 197667 [Multi-domain] Cd Length: 17 Bit Score: 34.34 E-value: 4.64e-03
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zf-CCHC | pfam00098 | Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ... |
443-459 | 5.52e-03 | |||
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger. Pssm-ID: 395050 [Multi-domain] Cd Length: 18 Bit Score: 34.43 E-value: 5.52e-03
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Name | Accession | Description | Interval | E-value | |||
DUF4939 | pfam16297 | Domain of unknown function (DUF4939); This family consists of uncharacterized proteins around ... |
237-316 | 3.33e-10 | |||
Domain of unknown function (DUF4939); This family consists of uncharacterized proteins around 110 residues in length and is mainly found in various mammalia species. LDOC1, a member of this family and a novel MZF-1-interacting protein, inhibits NF-kappaB activation and relates with cancer and some other diseases. But the specific function of this family is still unknown. Pssm-ID: 465086 Cd Length: 112 Bit Score: 57.23 E-value: 3.33e-10
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Ty3_capsid | pfam19259 | Ty3 transposon capsid-like protein; This entry corresponds to the capsid protein found in the ... |
234-380 | 1.69e-08 | |||
Ty3 transposon capsid-like protein; This entry corresponds to the capsid protein found in the Ty3 transposons of yeast as well as other transposable elements. Pssm-ID: 437091 [Multi-domain] Cd Length: 197 Bit Score: 54.40 E-value: 1.69e-08
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PRK10263 | PRK10263 | DNA translocase FtsK; Provisional |
70-179 | 4.15e-05 | |||
DNA translocase FtsK; Provisional Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 46.23 E-value: 4.15e-05
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PTZ00368 | PTZ00368 | universal minicircle sequence binding protein (UMSBP); Provisional |
419-461 | 5.35e-04 | |||
universal minicircle sequence binding protein (UMSBP); Provisional Pssm-ID: 173561 [Multi-domain] Cd Length: 148 Bit Score: 40.18 E-value: 5.35e-04
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PTZ00368 | PTZ00368 | universal minicircle sequence binding protein (UMSBP); Provisional |
420-462 | 1.00e-03 | |||
universal minicircle sequence binding protein (UMSBP); Provisional Pssm-ID: 173561 [Multi-domain] Cd Length: 148 Bit Score: 39.40 E-value: 1.00e-03
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PHA03160 | PHA03160 | hypothetical protein; Provisional |
31-161 | 1.26e-03 | |||
hypothetical protein; Provisional Pssm-ID: 165431 Cd Length: 499 Bit Score: 41.23 E-value: 1.26e-03
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ZnF_C2HC | smart00343 | zinc finger; |
445-459 | 4.64e-03 | |||
zinc finger; Pssm-ID: 197667 [Multi-domain] Cd Length: 17 Bit Score: 34.34 E-value: 4.64e-03
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zf-CCHC | pfam00098 | Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ... |
443-459 | 5.52e-03 | |||
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger. Pssm-ID: 395050 [Multi-domain] Cd Length: 18 Bit Score: 34.43 E-value: 5.52e-03
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Blast search parameters | ||||
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