NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|154937330|ref|NP_699200|]
View 

sodium-dependent glucose transporter 1 [Homo sapiens]

Protein Classification

sodium-dependent glucose transporter 1( domain architecture ID 13024592)

sodium-dependent glucose transporter 1 (NaGLT1) may function as a sodium-dependent glucose transporter, which is a potential channel for urea in the inner medulla of kidney

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
MFS_NaGLT1_MFSD4B cd17454
Sodium-dependent glucose transporter 1, also called Major facilitator superfamily ...
1-407 0e+00

Sodium-dependent glucose transporter 1, also called Major facilitator superfamily domain-containing protein 4B; Sodium-dependent glucose transporter 1 (NaGLT1) is also called major facilitator superfamily domain-containing protein 4B (MFSD4B). NaGLT1 is a primary fructose transporter in rat renal brush-border membranes. It also facilitates sodium-independent urea uptake in assays performed on Xenopus oocytes. NaGLT1/MFSD4B belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.


:

Pssm-ID: 341012  Cd Length: 369  Bit Score: 590.57  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330   1 MLCASFLGLGLSVAIVGPTFQDLATNVNRNISSLSFIFVGRALGYLSGSVIGGFLVDVMNYFLLLGISMSATTVGLYLVP 80
Cdd:cd17454    1 ALCASFLGLGMSIAVLGPTFQDLATNVNKNISNISYIFVGRSLGYLGGSVLGGILFDCMNHHLLLGFSMLITAAGLFAIP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330  81 FCKTAILLTVMMSIFGVSIGILDTGGNVLILAIWGDKGAPHMQALHFSFALGAFLApllaklalgptasaenhtesdfhP 160
Cdd:cd17454   81 WCKKALLLTALMSLIGVSMGVLDTGGNVLILNTWGDQAGPHMQALHFSFALGAFVA-----------------------P 137
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 161 ALNQSSdadsealfgvpndknLLWAYAVIGTYMFLVSVIFFCLFLKNSSKQEKARASAETFRRAKYHNALLCLLFLFFFF 240
Cdd:cd17454  138 ILAKLA---------------FLWAYIVIGTYVLLVSLFFFILYSKSSSNREKSKASAQKTRFAKYHNALIILLFLFFFF 202
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 241 YVGAEVTYGSYVFSFATTHAGMKESEAAGLNSIFWGTFAACRGLAIFFATCLQPGTMIVLSNIGSLTSSLFLVLFDKNPI 320
Cdd:cd17454  203 YVGAEVTYGSYIFTYAKTYVHMEESEAAGLNSLFWGTFAACRGLAIFFAACLYPGTMILLSLIGSTVSSLFLVLFSKNPI 282
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 321 CLWIATSVYGASMATTFPSGVSWIEQYTTIHGKSAAFFVIGASLGEMAIPAVIGILQGKYPDLPVVLYTSLGASIATGIL 400
Cdd:cd17454  283 SLWVGTAVYGASMATTFPSGISWIEQYTTITGKSAALFVVGAALGEMVIPAVVGYLQGHVPDYPVLMYTALGTSTMTAIL 362

                 ....*..
gi 154937330 401 FPVLYKL 407
Cdd:cd17454  363 FPVMYKL 369
 
Name Accession Description Interval E-value
MFS_NaGLT1_MFSD4B cd17454
Sodium-dependent glucose transporter 1, also called Major facilitator superfamily ...
1-407 0e+00

Sodium-dependent glucose transporter 1, also called Major facilitator superfamily domain-containing protein 4B; Sodium-dependent glucose transporter 1 (NaGLT1) is also called major facilitator superfamily domain-containing protein 4B (MFSD4B). NaGLT1 is a primary fructose transporter in rat renal brush-border membranes. It also facilitates sodium-independent urea uptake in assays performed on Xenopus oocytes. NaGLT1/MFSD4B belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.


Pssm-ID: 341012  Cd Length: 369  Bit Score: 590.57  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330   1 MLCASFLGLGLSVAIVGPTFQDLATNVNRNISSLSFIFVGRALGYLSGSVIGGFLVDVMNYFLLLGISMSATTVGLYLVP 80
Cdd:cd17454    1 ALCASFLGLGMSIAVLGPTFQDLATNVNKNISNISYIFVGRSLGYLGGSVLGGILFDCMNHHLLLGFSMLITAAGLFAIP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330  81 FCKTAILLTVMMSIFGVSIGILDTGGNVLILAIWGDKGAPHMQALHFSFALGAFLApllaklalgptasaenhtesdfhP 160
Cdd:cd17454   81 WCKKALLLTALMSLIGVSMGVLDTGGNVLILNTWGDQAGPHMQALHFSFALGAFVA-----------------------P 137
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 161 ALNQSSdadsealfgvpndknLLWAYAVIGTYMFLVSVIFFCLFLKNSSKQEKARASAETFRRAKYHNALLCLLFLFFFF 240
Cdd:cd17454  138 ILAKLA---------------FLWAYIVIGTYVLLVSLFFFILYSKSSSNREKSKASAQKTRFAKYHNALIILLFLFFFF 202
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 241 YVGAEVTYGSYVFSFATTHAGMKESEAAGLNSIFWGTFAACRGLAIFFATCLQPGTMIVLSNIGSLTSSLFLVLFDKNPI 320
Cdd:cd17454  203 YVGAEVTYGSYIFTYAKTYVHMEESEAAGLNSLFWGTFAACRGLAIFFAACLYPGTMILLSLIGSTVSSLFLVLFSKNPI 282
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 321 CLWIATSVYGASMATTFPSGVSWIEQYTTIHGKSAAFFVIGASLGEMAIPAVIGILQGKYPDLPVVLYTSLGASIATGIL 400
Cdd:cd17454  283 SLWVGTAVYGASMATTFPSGISWIEQYTTITGKSAALFVVGAALGEMVIPAVVGYLQGHVPDYPVLMYTALGTSTMTAIL 362

                 ....*..
gi 154937330 401 FPVLYKL 407
Cdd:cd17454  363 FPVMYKL 369
FucP COG0738
Fucose permease [Carbohydrate transport and metabolism];
1-376 3.19e-29

Fucose permease [Carbohydrate transport and metabolism];


Pssm-ID: 440501 [Multi-domain]  Cd Length: 391  Bit Score: 118.80  E-value: 3.19e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330   1 MLCASFLGLGLSVAIVGPTFQDLATNVNRNISSLSFIFVGRALGYLSGSVIGGFLVDVMNYFLLLGISMSATTVGLYLVP 80
Cdd:COG0738   12 AIYLLFFLWGFATALWGPLIPALKDAFGLSDAQAGLLLFAFFLGYLLASLPAGRLIDRFGYKRGLLLGLLLMALGLLLFA 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330  81 FCKTAILLTVMMSIFGVSIGILDTGGNVLILAIWGDKGAPHMQALHFSFALGAFlapllaklaLGPTASAenhtesdfhp 160
Cdd:COG0738   92 LAPSYPLLLLALFLLGLGLGLLDVAANPYVAALGPETAASRLNLLHAFFSLGAL---------LGPLLGG---------- 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 161 alnqssdadseALFGVPNDKNLLWAYAVIGTYMFLVSVIFFCLFLKNSSKQEKARASAETFRRAKYHNALLCLLFLFFFF 240
Cdd:COG0738  153 -----------LLILLGLSLSWHLPYLILAVLLLLLALLFLRSKLPEIEEEEEEAAGSAASLKSLLKNPRLLLGGLAIFL 221
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 241 YVGAEVTYGSYVFSFATTHAGMKESEAAGLNSIFWGTFAACRGLAIFFATCLQPGTMIVLSNIGSLTSSLFLVLFDkNPI 320
Cdd:COG0738  222 YVGAEGAIGDWLPLYLKDVLGLSEATAALGLSLFWGGMTIGRFLGGFLLKRFGPVRLLRLSALLAAVGLLLALLAP-GPW 300
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 154937330 321 CLWIATSVYGASMATTFPSGVSW-IEQYTTIHGKSAAFFVIGASLGEMAIPAVIGIL 376
Cdd:COG0738  301 LALIGLALVGLGLSLMFPTIFSLaLDGLGKRTAAAVSAVLIMGIVGGAIGPPLIGFL 357
MFS_1 pfam07690
Major Facilitator Superfamily;
2-370 5.72e-06

Major Facilitator Superfamily;


Pssm-ID: 429598 [Multi-domain]  Cd Length: 344  Bit Score: 48.57  E-value: 5.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330    2 LCASFLGLGLSVAIVGPTF-QDLATNVNRNISSLSFIFVGRALGYLSGSVIGGFLVDVMNYFLLLGISMSATTVGLYLVP 80
Cdd:pfam07690   1 LFLAAFLAALGRSLLGPALpLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330   81 FCKTAILLTVMMSIFGVSIGILDTGGNVLILAIWGDKgaphmqalHFSFALGAFLAPLLAKLALGPTASAENHTESDFHp 160
Cdd:pfam07690  81 FASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPE--------ERGRALGLVSAGFGLGAALGPLLGGLLASLFGWR- 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330  161 alnqssdadsealfgvpndknllWAYAVIGTYMFLVSVIFFCLFLKNSSKQEKARASAETFRRAKYHNALLCLLFLFFFF 240
Cdd:pfam07690 152 -----------------------AAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLA 208
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330  241 YVGAEVTYGSYVFSFAT--THAGMKESEAAGLNSIFWGTFAACRGLAIFFATCLQPGTMIVLSNIGSLTSSLFLVL--FD 316
Cdd:pfam07690 209 LLLFGFAFFGLLTYLPLyqEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLlsLT 288
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 154937330  317 KNPICLWIATSVYGASMATTFPSGVSWIEQYTTIH--GKSAAFFVIGASLGEMAIP 370
Cdd:pfam07690 289 LSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEerGTASGLYNTAGSLGGALGP 344
 
Name Accession Description Interval E-value
MFS_NaGLT1_MFSD4B cd17454
Sodium-dependent glucose transporter 1, also called Major facilitator superfamily ...
1-407 0e+00

Sodium-dependent glucose transporter 1, also called Major facilitator superfamily domain-containing protein 4B; Sodium-dependent glucose transporter 1 (NaGLT1) is also called major facilitator superfamily domain-containing protein 4B (MFSD4B). NaGLT1 is a primary fructose transporter in rat renal brush-border membranes. It also facilitates sodium-independent urea uptake in assays performed on Xenopus oocytes. NaGLT1/MFSD4B belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.


Pssm-ID: 341012  Cd Length: 369  Bit Score: 590.57  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330   1 MLCASFLGLGLSVAIVGPTFQDLATNVNRNISSLSFIFVGRALGYLSGSVIGGFLVDVMNYFLLLGISMSATTVGLYLVP 80
Cdd:cd17454    1 ALCASFLGLGMSIAVLGPTFQDLATNVNKNISNISYIFVGRSLGYLGGSVLGGILFDCMNHHLLLGFSMLITAAGLFAIP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330  81 FCKTAILLTVMMSIFGVSIGILDTGGNVLILAIWGDKGAPHMQALHFSFALGAFLApllaklalgptasaenhtesdfhP 160
Cdd:cd17454   81 WCKKALLLTALMSLIGVSMGVLDTGGNVLILNTWGDQAGPHMQALHFSFALGAFVA-----------------------P 137
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 161 ALNQSSdadsealfgvpndknLLWAYAVIGTYMFLVSVIFFCLFLKNSSKQEKARASAETFRRAKYHNALLCLLFLFFFF 240
Cdd:cd17454  138 ILAKLA---------------FLWAYIVIGTYVLLVSLFFFILYSKSSSNREKSKASAQKTRFAKYHNALIILLFLFFFF 202
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 241 YVGAEVTYGSYVFSFATTHAGMKESEAAGLNSIFWGTFAACRGLAIFFATCLQPGTMIVLSNIGSLTSSLFLVLFDKNPI 320
Cdd:cd17454  203 YVGAEVTYGSYIFTYAKTYVHMEESEAAGLNSLFWGTFAACRGLAIFFAACLYPGTMILLSLIGSTVSSLFLVLFSKNPI 282
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 321 CLWIATSVYGASMATTFPSGVSWIEQYTTIHGKSAAFFVIGASLGEMAIPAVIGILQGKYPDLPVVLYTSLGASIATGIL 400
Cdd:cd17454  283 SLWVGTAVYGASMATTFPSGISWIEQYTTITGKSAALFVVGAALGEMVIPAVVGYLQGHVPDYPVLMYTALGTSTMTAIL 362

                 ....*..
gi 154937330 401 FPVLYKL 407
Cdd:cd17454  363 FPVMYKL 369
MFS_MFSD4 cd17395
Major facilitator superfamily domain-containing protein 4; The Major facilitator superfamily ...
4-407 1.59e-124

Major facilitator superfamily domain-containing protein 4; The Major facilitator superfamily domain-containing protein 4 (MFSD4) subfamily consists of two vertebrate members: MFSD4A and MFSD4B. The function of MFSD4A is unknown. MFSD4B is more commonly know as sodium-dependent glucose transporter 1 (NaGLT1), a primary fructose transporter in rat renal brush-border membranes that also facilitates sodium-independent urea uptake. The MFSD4 subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.


Pssm-ID: 340953 [Multi-domain]  Cd Length: 367  Bit Score: 368.78  E-value: 1.59e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330   4 ASFLGLGLSVAIVGPTFQDLATNVNRNISSLSFIFVGRALGYLSGSVIGGFLVDVMNYFLLLGISMSATTVGLYLVPFCK 83
Cdd:cd17395    4 SVFFSFGLSIAFLGPTLLDLACNTNSSLPQISWVFFSRQLGYLLGSALGGVFKRTLNSLWALFTSSLLIALVLAVIPFCK 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330  84 TAILLTVMMSIFGVSIGILDTGGNVLILAIWGDKGAPHMQALHFSFALGAFlapllaklalgptasaenhtesdfhpaln 163
Cdd:cd17395   84 DVKVLASVMAIAGLAMGCLDTGANMQIVRMWQKDSAPFLQVLHFSFGFGAF----------------------------- 134
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 164 qssdadseaLFGVPNDKNLLWAYAVIGTYMFLVSVIFFCLFLKNSSKQEK-ARASAETFRRAKYHNALLCLLFLFFFFYV 242
Cdd:cd17395  135 ---------LAPLIADPFLSYAYWIMALINLPVPMAVLMLLSKERLLTCCsQRRRKNLRRAPYSFFAIHITGALFLFMYV 205
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 243 GAEVTYGSYVFSFATTHAGMKESEAAGLNSIFWGTFAACRGLAIFFATCLQPGTMIVLSNIGSLTSSLFLVLFDKNPICL 322
Cdd:cd17395  206 GLEGAYGAFVYSYAVEKPGVGHKVAAYLPSLFWGTFTLGRLLSIPISSRMKPATMVVLNVVGVVVTSLVLLLFSKSVVFL 285
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 323 WIATSVYGASMATTFPSGVSWIEQYTTIHGKSAAFFVIGASLGEMAIPAVIGILQgkyPDLPVVLYTSLGASIATGILFP 402
Cdd:cd17395  286 WIGTASLGLFLASTFPSMLSYTEDSLQYTGCSTTVLVTGAGLGEMVLPMLVGSIQ---PFQAQGSYSFLVCGVLFGCLAF 362

                 ....*
gi 154937330 403 VLYKL 407
Cdd:cd17395  363 TFYIL 367
MFS_FucP_MFSD4_like cd17333
Bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein ...
2-397 3.63e-36

Bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4, and similar proteins; This family is composed of bacterial L-fucose permease (FucP), eukaryotic Major facilitator superfamily domain-containing protein 4 (MFSD4) proteins, and similar proteins. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. The MFSD4 subfamily consists of two vertebrate members: MFSD4A and MFSD4B. The function of MFSD4A is unknown. MFSD4B is more commonly know as Sodium-dependent glucose transporter 1 (NaGLT1), a primary fructose transporter in rat renal brush-border membranes that also facilitates sodium-independent urea uptake. The FucP/MFSD4 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.


Pssm-ID: 340891 [Multi-domain]  Cd Length: 372  Bit Score: 138.22  E-value: 3.63e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330   2 LCASFLGLGLSVAIVGPTFQDLATNVNRNISSLSFIFVGRALGYLSGSVIGGFLVDVMNYFLLLGISMSATTVGLYLVPF 81
Cdd:cd17333    1 LYISFFSNGLTDALLGILGPSLEEAFNLNVADVSVIFSSQNAGYLIGSLLAGFLMKRLGRRRTLILGLLLISLALALIFA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330  82 CKTAILLTVMMSIFGVSIGILDTGGNVLILAIWGDKGAPHMQALHFSFALGAFlapllaklalgptasaenhtesdFHPA 161
Cdd:cd17333   81 TPSIYLFVVLMFLAGLGAGILDTGANTFVGALFEESSATRLNVLHGFFGLGAL-----------------------IGPL 137
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 162 LnqssdadseALFGVPNDKNLLWAYAVIGTYMFLVSV-IFFCLFLKNSSKQEKARASAETFRRA--KYHNALLCLLFLFF 238
Cdd:cd17333  138 I---------ATSLLTSELSWSWAYLIIGLIYLLLAIlILLTLFPELPSARNPQQSVGAFSASAsrLLRNPSIILGALAL 208
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 239 FFYVGAEVTYGSYVFSFATTHAGMKESEAAGLNSIFWGTFAACRGLAIFFATCLQPGTMIVLSNIGSLTsSLFLVLFDKN 318
Cdd:cd17333  209 FLYVGAETAFSSWVPSYLVEKKHVSDGLAGYLLSGFWVGITIGRLLGGPISRRIKPHTLLVLSGSGALL-GLLILLLAPT 287
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 319 PICLWIATSVYGASMATTFPSGVSW-IEQYTTIHGKSAAFFVIGASLGEMAIPAVIG-ILQGKYPDLPVVLYTSLGASIA 396
Cdd:cd17333  288 LVVGLVATALLGLFMAALFPTILSLgISNLPYAKGKGTSVLLAAGSIGGAIIPFIMGfIAEAVGIQTAMLLITILYAIIF 367

                 .
gi 154937330 397 T 397
Cdd:cd17333  368 V 368
FucP COG0738
Fucose permease [Carbohydrate transport and metabolism];
1-376 3.19e-29

Fucose permease [Carbohydrate transport and metabolism];


Pssm-ID: 440501 [Multi-domain]  Cd Length: 391  Bit Score: 118.80  E-value: 3.19e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330   1 MLCASFLGLGLSVAIVGPTFQDLATNVNRNISSLSFIFVGRALGYLSGSVIGGFLVDVMNYFLLLGISMSATTVGLYLVP 80
Cdd:COG0738   12 AIYLLFFLWGFATALWGPLIPALKDAFGLSDAQAGLLLFAFFLGYLLASLPAGRLIDRFGYKRGLLLGLLLMALGLLLFA 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330  81 FCKTAILLTVMMSIFGVSIGILDTGGNVLILAIWGDKGAPHMQALHFSFALGAFlapllaklaLGPTASAenhtesdfhp 160
Cdd:COG0738   92 LAPSYPLLLLALFLLGLGLGLLDVAANPYVAALGPETAASRLNLLHAFFSLGAL---------LGPLLGG---------- 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 161 alnqssdadseALFGVPNDKNLLWAYAVIGTYMFLVSVIFFCLFLKNSSKQEKARASAETFRRAKYHNALLCLLFLFFFF 240
Cdd:COG0738  153 -----------LLILLGLSLSWHLPYLILAVLLLLLALLFLRSKLPEIEEEEEEAAGSAASLKSLLKNPRLLLGGLAIFL 221
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 241 YVGAEVTYGSYVFSFATTHAGMKESEAAGLNSIFWGTFAACRGLAIFFATCLQPGTMIVLSNIGSLTSSLFLVLFDkNPI 320
Cdd:COG0738  222 YVGAEGAIGDWLPLYLKDVLGLSEATAALGLSLFWGGMTIGRFLGGFLLKRFGPVRLLRLSALLAAVGLLLALLAP-GPW 300
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 154937330 321 CLWIATSVYGASMATTFPSGVSW-IEQYTTIHGKSAAFFVIGASLGEMAIPAVIGIL 376
Cdd:COG0738  301 LALIGLALVGLGLSLMFPTIFSLaLDGLGKRTAAAVSAVLIMGIVGGAIGPPLIGFL 357
MFS_MFSD4A cd17453
Major facilitator superfamily domain-containing protein 4A; Major facilitator superfamily ...
6-380 1.94e-20

Major facilitator superfamily domain-containing protein 4A; Major facilitator superfamily domain-containing protein 4A (MFSD4A) belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.


Pssm-ID: 341011  Cd Length: 415  Bit Score: 93.71  E-value: 1.94e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330   6 FLGLGLSVAIVGPTFQDLATNVNRNISSLSFIFVGRALGYLSGSVIGG-FLVDVMNYFLLLGISMSATTVGLYLVPFCKT 84
Cdd:cd17453    8 FFSFGLCIAFLGPTLLDLRCQTQSSLQQITWVFFSQQFCLLLGSTLGGvFKRTLAQSLFALFVSSLAISVVFAIIPFCRN 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330  85 AILLTVMMSIFGVSIGILDTGGNVLILAIWGDKGAPHMQALHFSFALGaflaPLLAKLALGPTASAENHTESDFH----- 159
Cdd:cd17453   88 VGVLAFVMAVAGLAMGCIDTISNMQLVKIYQKDSAVFLQALHFFVGFG----ALLSPLIADPFLSDTNCVSYAFWimaii 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 160 ------------------PALNQSS----DADSEALFGVPNDKNllwayavigtymflvsviffclfLKNSSKQEKARAS 217
Cdd:cd17453  164 nlpvpiavfvllykermvPCCSDPSrpllSADELAMEARPEEKL-----------------------DESTGKAHTSNGH 220
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 218 AETFRRAKYHNALLCLLFLFFFFYVGAEV---------TYGSYVFSFATTHAGMKESEAAG-LNSIFWGTFAACRGLAIF 287
Cdd:cd17453  221 ADLFSCCQSKNFRGAPFSFFAIHVTGALVlfmtdgivgEYSGFVYSYAVEPPLNLPHKVAGyLPSLFWGFITLGRLISIP 300
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 288 FATCLQPGTMIVLSNIGSLTSSLFLVLFDKNPICLWIATSVYGASMATTFPSGVSWIEQYTTIHGKSAAFFVIGASLGEM 367
Cdd:cd17453  301 ISYRMKPATMVFINLVGVIVTFLLLLIFSNSTVFLFVGTASLGLFLSSTFPSMLAYTEDILQYKGCATTVLVTGAGMGEM 380
                        410
                 ....*....|....*.
gi 154937330 368 AIPAVIGIL---QGKY 380
Cdd:cd17453  381 VLQMLVGSImhsQGSY 396
MFS cd06174
Major Facilitator Superfamily; The Major Facilitator Superfamily (MFS) is a large and diverse ...
2-401 2.26e-11

Major Facilitator Superfamily; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.


Pssm-ID: 349949 [Multi-domain]  Cd Length: 378  Bit Score: 65.53  E-value: 2.26e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330   2 LCASFLGLGLSVAIVGPTFQDLATNVNRNISSLSFIFVGRALGYLSGSVIGGFLVDVMNYFLLLGISMSATTVGLYLVPF 81
Cdd:cd06174    1 LLLGFFLTGLARGLISPLLPALLQSFGLSASQLGLLFALFSLGYALLQPLAGLLADRFGRRPVLLLGLLLFALGALLFAF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330  82 CKTAILLTVMMSIFGVSIGILDTGGNVLILAIWGDKGAPHMQALHFSFAlgaflaplLAKLALGPTASAENhtesdfhpa 161
Cdd:cd06174   81 APSFWLLLLGRFLLGLGSGLIDPAVLALIADLFPERERGRALGLLQAFG--------SVGGILGPLLGGIL--------- 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 162 lnqssdadseALFGVPNDKNLLWAYAVIGTYMFLVSVIFFCLFLKNSSKQEKARASAETFRRAK--YHNALLCLLFLFFF 239
Cdd:cd06174  144 ----------ASSLGFGWRAVFLIAAALALLAAILLLLVVPDPPESARAKNEEASSKSVLKLLKrvLKNPGLWLLLLAIF 213
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 240 FYVGAEVTYGSYVFSFATTHAGMKESEAAGLNSIFWGTFAACRGLAIFFATCLQPGTMIVLSNIGSLTSSLFLVLFDKNP 319
Cdd:cd06174  214 LVNLAYYSFSTLLPLFLLDLGGLSVAVAGLLLSLFGLAGALGSLLLGLLSDRLIGRKPLLLIGLLLMALGLALLLLAPSL 293
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 320 ICLWIATSVYGASMATTFPSGVSWIEQYTTIHGKSAA--FFVIGASLGEMAIPAVIGILQGKYPDLPVVLYTSLGASIAT 397
Cdd:cd06174  294 LLLLLLLLLLGFGLGGLLPLSFALIAELFPPEIRGTAfgLLNTFGFLGGAIGPLLAGFLLAATFGLTGAFLVLAVLLLLA 373

                 ....
gi 154937330 398 GILF 401
Cdd:cd06174  374 AILL 377
MFS_FucP_like cd17394
Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters; ...
156-376 4.97e-08

Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters; This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.


Pssm-ID: 340952 [Multi-domain]  Cd Length: 401  Bit Score: 55.31  E-value: 4.97e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 156 SDFHPALNQSSDADSEALFgvpNDKNLLWAyAVIGTYMFLVSVIF----FCLFLKNSSKQEKARASAETFRRAKY--HNA 229
Cdd:cd17394  152 SGIPSTATALAAMSAAELQ---AYKTAELA-SVQLPYLGIALVLLllavLILLSKLPEIEAAEAEALGSKGTLLRllKNP 227
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 230 LLCLLFLFFFFYVGAEVTYGSYVFSFAT-THAGMKESEAAGLNSIFWGTFAACRGLAIFFATCLQPGTMIVLSNIGSLTs 308
Cdd:cd17394  228 HLRLGVLAIFFYVGAEVAIWSFLINYLMeYIAGLTETSAATFVSYYWGGFMVGRFLGTALLKKISPKKLLAVFALLGLL- 306
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 154937330 309 SLFLVLFDKNPICLWIATSVyGASMATTFPSGVSWIEQYTTIHGKSAAFFVIGASLGEMAIPAVIGIL 376
Cdd:cd17394  307 LLLGAIFTGGMVALYALVLV-GFFNSIMFPTIFSLALKGLGKHTKTGSGLLVMAIVGGAVVPLIQGAV 373
AraJ COG2814
Predicted arabinose efflux permease AraJ, MFS family [Carbohydrate transport and metabolism];
1-357 1.96e-06

Predicted arabinose efflux permease AraJ, MFS family [Carbohydrate transport and metabolism];


Pssm-ID: 442063 [Multi-domain]  Cd Length: 348  Bit Score: 49.97  E-value: 1.96e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330   1 MLCASFLGLGLSVAIVGPTFQDLATNVNRNISSLSFIFVGRALGYLSGSVIGGFLVDVMNYFLLLGISMSATTVGLYLVP 80
Cdd:COG2814   14 ALALGAFLSGLGIGIVLPALPLIAADLGASPAQAGLVVTAYLLGAALGAPLAGRLADRFGRRRVLLLGLLLFALGSLLCA 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330  81 FCKTAILLTVMMSIFGVSIGILDTGGNVLILAIWGDKGAPHMQALHFS-FALGaflapllakLALGPTASAenhtesdfh 159
Cdd:COG2814   94 LAPSLWLLLAARFLQGLGAGALFPAALALIADLVPPERRGRALGLLGAgLGLG---------PALGPLLGG--------- 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 160 palnqssdadseALFGVPNDKNLLWAYAVIGtymfLVSVIFFCLFLKNSSKQEKARASAETFRRAKyhNALLCLLFLFFF 239
Cdd:COG2814  156 ------------LLADLFGWRWVFLVNAVLA----LLALLLLLRLLPESRPAARARLRGSLRELLR--RPRLLLLLLLAF 217
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330 240 FYVGAEVTYGSYVFSFATTHAGMKESEAAGLNSIFWGTFAACRGLAIFFATCLQPGTMIVLSNIGSLTsSLFLVLFDKNP 319
Cdd:COG2814  218 LLGFGFFALFTYLPLYLQEVLGLSASAAGLLLALFGLGGVLGALLAGRLADRFGRRRLLLIGLLLLAL-GLLLLALAGSL 296
                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 154937330 320 ICLWIATSVYGASMATTFPSGVSWIEQYTTIHGKSAAF 357
Cdd:COG2814  297 WLLLLALFLLGFGFGLLFPLLQALVAELAPPEARGRAS 334
MFS_1 pfam07690
Major Facilitator Superfamily;
2-370 5.72e-06

Major Facilitator Superfamily;


Pssm-ID: 429598 [Multi-domain]  Cd Length: 344  Bit Score: 48.57  E-value: 5.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330    2 LCASFLGLGLSVAIVGPTF-QDLATNVNRNISSLSFIFVGRALGYLSGSVIGGFLVDVMNYFLLLGISMSATTVGLYLVP 80
Cdd:pfam07690   1 LFLAAFLAALGRSLLGPALpLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330   81 FCKTAILLTVMMSIFGVSIGILDTGGNVLILAIWGDKgaphmqalHFSFALGAFLAPLLAKLALGPTASAENHTESDFHp 160
Cdd:pfam07690  81 FASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPE--------ERGRALGLVSAGFGLGAALGPLLGGLLASLFGWR- 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330  161 alnqssdadsealfgvpndknllWAYAVIGTYMFLVSVIFFCLFLKNSSKQEKARASAETFRRAKYHNALLCLLFLFFFF 240
Cdd:pfam07690 152 -----------------------AAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLA 208
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330  241 YVGAEVTYGSYVFSFAT--THAGMKESEAAGLNSIFWGTFAACRGLAIFFATCLQPGTMIVLSNIGSLTSSLFLVL--FD 316
Cdd:pfam07690 209 LLLFGFAFFGLLTYLPLyqEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLlsLT 288
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 154937330  317 KNPICLWIATSVYGASMATTFPSGVSWIEQYTTIH--GKSAAFFVIGASLGEMAIP 370
Cdd:pfam07690 289 LSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEerGTASGLYNTAGSLGGALGP 344
MFS_MdtG_SLC18_like cd17325
bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator ...
1-110 6.69e-05

bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters; This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.


Pssm-ID: 340883 [Multi-domain]  Cd Length: 375  Bit Score: 45.26  E-value: 6.69e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330   1 MLCASFLGLGLSVAIVGPTFQDLATNV-NRNISSLSFIFVGRALGYLSGSVIGGFLVDVMNYFLLLGISMSATTVGLYLV 79
Cdd:cd17325  203 ALFLAIFVLAFAFGALEPFLPLYAAELgGLSPAQIGLLFGAQGLASALSQPPAGKLSDRIGRKPLILIGLLLSAVALLLL 282
                         90       100       110
                 ....*....|....*....|....*....|.
gi 154937330  80 PFCKTAILLTVMMSIFGVSIGILDTGGNVLI 110
Cdd:cd17325  283 PLATSFWLLLLLLALLGLGLGLVFPATLALL 313
AraJ COG2814
Predicted arabinose efflux permease AraJ, MFS family [Carbohydrate transport and metabolism];
1-129 2.77e-04

Predicted arabinose efflux permease AraJ, MFS family [Carbohydrate transport and metabolism];


Pssm-ID: 442063 [Multi-domain]  Cd Length: 348  Bit Score: 43.04  E-value: 2.77e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330   1 MLCASFLGLGLSVAIVGPTFQdLATNVNRNISSLSFIFVGRALGYLSGSVIGGFLVDVMNYFLLLGISMSATTVGLYLVP 80
Cdd:COG2814  213 LLLAFLLGFGFFALFTYLPLY-LQEVLGLSASAAGLLLALFGLGGVLGALLAGRLADRFGRRRLLLIGLLLLALGLLLLA 291
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 154937330  81 FCKTAILLTVMMSIFGVSIGILDTGGNVLILAIWGDKGAPHMQALHFSF 129
Cdd:COG2814  292 LAGSLWLLLLALFLLGFGFGLLFPLLQALVAELAPPEARGRASGLYNSA 340
MFS_MosC_like cd17393
Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of ...
6-132 1.74e-03

Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters; The gene encoding Sinorhizobium meliloti membrane protein MosC is part of the mos locus, which encodes the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine. MosC belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.


Pssm-ID: 340951 [Multi-domain]  Cd Length: 373  Bit Score: 40.70  E-value: 1.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154937330   6 FLGLGLSVAIVGPTFQDLATNVNRNISSLSFIFVGRALGYLSGSVIGGFLVDVMNYFLLLGISMSATTVGLYLVPFCKTA 85
Cdd:cd17393    8 FFINGILMASWATRIPAIKDRLGLSDAALGLLLLALGVGALVAMPLAGRLVARFGSRRVTRLGALLLLLALLLLGLAPSV 87
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 154937330  86 ILLTVMMSIFGVSIGILDTGGNVLILAIWGDKGAPHMQALHFSFALG 132
Cdd:cd17393   88 PALALALFLFGAANGALDVAMNAQGVAVERAYGRPIMSSLHAMWSLG 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH