|
Name |
Accession |
Description |
Interval |
E-value |
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
213-590 |
3.03e-09 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 62.88 E-value: 3.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 213 PSVEPGATNIQQPSSPAPSTKQSSSPyeDKDKKEKSAVRPSPSPERSSTGPELPAPTPLLVEQHVDSPRPLAAIPSSQEP 292
Cdd:PHA03307 75 PGTEAPANESRSTPTWSLSTLAPASP--AREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASP 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 293 VNPSSEASPTRGCSPPKSPEKPPQSTSSES--CPPSPQPTKGSRHASSSPESLKPTPAPGSRREISSSPTSKNRSHGRAK 370
Cdd:PHA03307 153 PAAGASPAAVASDAASSRQAALPLSSPEETarAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDA 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 371 RDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGwSRSRNTQ 450
Cdd:PHA03307 233 GASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPG-SGPAPSS 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 451 RRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPARRRSRTRS 530
Cdd:PHA03307 312 PRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRAR 391
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 531 pvrrrsrsrsqarrsgrsrsrtPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTPAR 590
Cdd:PHA03307 392 ----------------------AAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYAR 429
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1886-2370 |
5.09e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 62.26 E-value: 5.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 1886 SRSRTPLLPRKRSRSRSPLAIRRRSRSRTPraargkrsltrsPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVAL 1965
Cdd:PHA03247 2596 ARPRAPVDDRGDPRGPAPPSPLPPDTHAPD------------PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSR 2663
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 1966 sSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGSArtpmsvlqqtgGSMMDGPGPRIPDHPRSsvpenhaqsrialalTAIS 2045
Cdd:PHA03247 2664 -PRRARRLGRAAQASSPPQRPRRRAARPTVGSL-----------TSLADPPPPPPTPEPAP---------------HALV 2716
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2046 LGTARPPPSMSAAGLAARMSQVPAPVPLMslrTAPAANLASRIPAASAAAMNLASARTSAIPASvnladsrTPAAAAAMN 2125
Cdd:PHA03247 2717 SATPLPPGPAAARQASPALPAAPAPPAVP---AGPATPGGPARPARPPTTAGPPAPAPPAAPAA-------GPPRRLTRP 2786
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2126 LASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAAlsltgSGTPPTAANYPSSSRTPQAPTPANLVVGprsaHGTA 2205
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA-----GPLPPPTSAQPTAPPPPPGPPPPSLPLG----GSVA 2857
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2206 PVNIAGSRTPAGLAPTNLSSSRMAPALSganLTSPRVPLSAydrvsgRTSPLMLDRARSRTPPSAPSQSRMTSERERAPS 2285
Cdd:PHA03247 2858 PGGDVRRRPPSRSPAAKPAAPARPPVRR---LARPAVSRST------ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ 2928
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2286 PASRM-VQASSQSLLPPAQDRPRSPVPS-AFSDQSRSVVQTTPVAGSQSLSSGTVAKSTSSASDHNGMLSGPAPGIS--- 2360
Cdd:PHA03247 2929 PQPPPpPPPRPQPPLAPTTDPAGAGEPSgAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSswa 3008
|
490
....*....|....*
gi 126157504 2361 -----HAEGGEPPAS 2370
Cdd:PHA03247 3009 sslalHEETDPPPVS 3023
|
|
| U2AF_lg |
TIGR01642 |
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ... |
403-507 |
2.18e-05 |
|
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.
Pssm-ID: 273727 [Multi-domain] Cd Length: 509 Bit Score: 49.89 E-value: 2.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 403 KRGHSRSRSPQWRRSRSAQRWgKSRSPQRRGRSRSpqRPGWSRSRNtqrrgrSRSARRGRSHSRSPATRGRSRSRTPARR 482
Cdd:TIGR01642 12 SRGRDRDRSSERPRRRSRDRS-RFRDRHRRSRERS--YREDSRPRD------RRRYDSRSPRSLRYSSVRRSRDRPRRRS 82
|
90 100
....*....|....*....|....*
gi 126157504 483 GRSRSRTPARRRSRSRTPARRRSRS 507
Cdd:TIGR01642 83 RSVRSIEQHRRRLRDRSPSNQWRKD 107
|
|
| RSRP |
pfam17069 |
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown. |
340-508 |
5.76e-03 |
|
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.
Pssm-ID: 293674 [Multi-domain] Cd Length: 299 Bit Score: 41.30 E-value: 5.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 340 PESLKPTPAPGSRREISSS-PTSKNRSHGRAKRDKSHSHTPSHRAGRSRS-PATKRGRSRSRTPTKR---GHSRSRSPQW 414
Cdd:pfam17069 10 PGSPQEKKSPSTSSSGSSSrLSSRSRSRSSSRSSRSHSRSSSRFSSRSRSrPRRSRSRSRSRRRHQRkyrRYSRSYSRSR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 415 RRSRSAQRWGKSRSPQRRGRSRSPQRpgwSRSRNTQRRGRSRSARRGRSHSRSpatrGRSRSRTPARRGRSRSRTpaRRR 494
Cdd:pfam17069 90 SRSRRRRYYRRSRYRYSRRYYRSPSR---SRSRSRSRSRGRSYYAIWRGSRYY----GFGRTVYPERSPRWRSRS--RTR 160
|
170
....*....|....
gi 126157504 495 SRSRTPARRRSRSR 508
Cdd:pfam17069 161 SRSRTPFRLSEKER 174
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
2184-2594 |
7.87e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 41.70 E-value: 7.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2184 RTPQAPTPANLVVGPRSAHGTAPVNIAGSRTPAGLAPTNLSSSRMAPALSGANLTSPRVPLSAYDRVSGRTSPLMLDRAR 2263
Cdd:PHA03307 25 PATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREG 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2264 SRTPPSAPSqsrmTSERERAPSPASRmvqassqsllPPAQDRPRSPVPSAFSDQSRSVVQTTPVAGSQSLSSGTVAKSTS 2343
Cdd:PHA03307 105 SPTPPGPSS----PDPPPPTPPPASP----------PPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSR 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2344 SASDHNGMLSGPAPGIShaeggEPPASTGAQQPSTLAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEG 2423
Cdd:PHA03307 171 QAALPLSSPEETARAPS-----SPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESS 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2424 SSLPAQPEVALKRVPSPTPVPKEAIREGRPQEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2503
Cdd:PHA03307 246 GCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESS 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2504 SSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRQPSPQPSPRDLQSSERVSWRGQRGDS 2583
Cdd:PHA03307 326 SSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATG 405
|
410
....*....|.
gi 126157504 2584 HSPGHKRKETP 2594
Cdd:PHA03307 406 RFPAGRPRPSP 416
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
213-590 |
3.03e-09 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 62.88 E-value: 3.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 213 PSVEPGATNIQQPSSPAPSTKQSSSPyeDKDKKEKSAVRPSPSPERSSTGPELPAPTPLLVEQHVDSPRPLAAIPSSQEP 292
Cdd:PHA03307 75 PGTEAPANESRSTPTWSLSTLAPASP--AREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASP 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 293 VNPSSEASPTRGCSPPKSPEKPPQSTSSES--CPPSPQPTKGSRHASSSPESLKPTPAPGSRREISSSPTSKNRSHGRAK 370
Cdd:PHA03307 153 PAAGASPAAVASDAASSRQAALPLSSPEETarAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDA 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 371 RDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGwSRSRNTQ 450
Cdd:PHA03307 233 GASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPG-SGPAPSS 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 451 RRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPARRRSRTRS 530
Cdd:PHA03307 312 PRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRAR 391
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 531 pvrrrsrsrsqarrsgrsrsrtPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTPAR 590
Cdd:PHA03307 392 ----------------------AAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYAR 429
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1886-2370 |
5.09e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 62.26 E-value: 5.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 1886 SRSRTPLLPRKRSRSRSPLAIRRRSRSRTPraargkrsltrsPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVAL 1965
Cdd:PHA03247 2596 ARPRAPVDDRGDPRGPAPPSPLPPDTHAPD------------PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSR 2663
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 1966 sSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGSArtpmsvlqqtgGSMMDGPGPRIPDHPRSsvpenhaqsrialalTAIS 2045
Cdd:PHA03247 2664 -PRRARRLGRAAQASSPPQRPRRRAARPTVGSL-----------TSLADPPPPPPTPEPAP---------------HALV 2716
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2046 LGTARPPPSMSAAGLAARMSQVPAPVPLMslrTAPAANLASRIPAASAAAMNLASARTSAIPASvnladsrTPAAAAAMN 2125
Cdd:PHA03247 2717 SATPLPPGPAAARQASPALPAAPAPPAVP---AGPATPGGPARPARPPTTAGPPAPAPPAAPAA-------GPPRRLTRP 2786
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2126 LASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAAlsltgSGTPPTAANYPSSSRTPQAPTPANLVVGprsaHGTA 2205
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA-----GPLPPPTSAQPTAPPPPPGPPPPSLPLG----GSVA 2857
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2206 PVNIAGSRTPAGLAPTNLSSSRMAPALSganLTSPRVPLSAydrvsgRTSPLMLDRARSRTPPSAPSQSRMTSERERAPS 2285
Cdd:PHA03247 2858 PGGDVRRRPPSRSPAAKPAAPARPPVRR---LARPAVSRST------ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ 2928
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2286 PASRM-VQASSQSLLPPAQDRPRSPVPS-AFSDQSRSVVQTTPVAGSQSLSSGTVAKSTSSASDHNGMLSGPAPGIS--- 2360
Cdd:PHA03247 2929 PQPPPpPPPRPQPPLAPTTDPAGAGEPSgAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSswa 3008
|
490
....*....|....*
gi 126157504 2361 -----HAEGGEPPAS 2370
Cdd:PHA03247 3009 sslalHEETDPPPVS 3023
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
2051-2309 |
5.66e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 52.16 E-value: 5.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2051 PPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTSAI---PASVNLADSRTPAAAAAMNLA 2127
Cdd:PRK07003 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAaaaAATRAEAPPAAPAPPATADRG 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2128 SPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAALSLTGSGTPPTAANYPSSSRTPQAPTPANLVVGPR-SAHGTAP 2206
Cdd:PRK07003 440 DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARaPAAASRE 519
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2207 VNIAGSRTPAGLAPTNLSSSRMAPALSGANLTSPRVPLSAYDRVSGRTSPLMLDRARS-----RTPPSAPSQSRMTSERE 2281
Cdd:PRK07003 520 DAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPaaapaAAPKPAAPRVAVQVPTP 599
|
250 260
....*....|....*....|....*...
gi 126157504 2282 RAPSPASRMVQASSQSLLPPAQDRPRSP 2309
Cdd:PRK07003 600 RARAATGDAPPNGAARAEQAAESRGAPP 627
|
|
| U2AF_lg |
TIGR01642 |
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ... |
403-507 |
2.18e-05 |
|
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.
Pssm-ID: 273727 [Multi-domain] Cd Length: 509 Bit Score: 49.89 E-value: 2.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 403 KRGHSRSRSPQWRRSRSAQRWgKSRSPQRRGRSRSpqRPGWSRSRNtqrrgrSRSARRGRSHSRSPATRGRSRSRTPARR 482
Cdd:TIGR01642 12 SRGRDRDRSSERPRRRSRDRS-RFRDRHRRSRERS--YREDSRPRD------RRRYDSRSPRSLRYSSVRRSRDRPRRRS 82
|
90 100
....*....|....*....|....*
gi 126157504 483 GRSRSRTPARRRSRSRTPARRRSRS 507
Cdd:TIGR01642 83 RSVRSIEQHRRRLRDRSPSNQWRKD 107
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
304-514 |
5.21e-05 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 48.75 E-value: 5.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 304 GCSPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPESLKPTPAPGSRREISSSPTSKNRSHGRAKRDKSHSHTPSHRA 383
Cdd:PRK12678 62 GAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGA 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 384 GRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRS 463
Cdd:PRK12678 142 ARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRR 221
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 126157504 464 HSRSPATRGRSRSRTPARRGRSRSRTPARRR-----SRSRTPARRRSRSRTPARRG 514
Cdd:PRK12678 222 DGGDRRGRRRRRDRRDARGDDNREDRGDRDGddgegRGGRRGRRFRDRDRRGRRGG 277
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
198-504 |
5.81e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 49.01 E-value: 5.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 198 QSPPLASGHQGEGDAPSVEPGATNIQQPSSPAPSTKQSSSPYEDKDKKEKSAVRPSPSPERSSTGPELPAPTPLLVEQHV 277
Cdd:PHA03307 150 ASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 278 DSPRPLAAIPSSQEPvnPSSEASPTRGCSPPKSPEKPPQSTSSESCPP-SPQPTKGSRHASSSPESLKPTPAPGSRREIS 356
Cdd:PHA03307 230 DDAGASSSDSSSSES--SGCGWGPENECPLPRPAPITLPTRIWEASGWnGPSSRPGPASSSSSPRERSPSPSPSSPGSGP 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 357 SSPTSKNRSHGRAKRDkSHSHTPSHRAGRSRSPATKRGRSRSRTPtkrghSRSRSPQWRRSrsaqrwgkSRSPQRRGRSR 436
Cdd:PHA03307 308 APSSPRASSSSSSSRE-SSSSSTSSSSESSRGAAVSPGPSPSRSP-----SPSRPPPPADP--------SSPRKRPRPSR 373
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 126157504 437 SPQRPGWSRSRNTqrrgrsrsarrGRSHSRSPATRGRSRSRTPAR-RGRSRSRTPARRRSRSRTPARRR 504
Cdd:PHA03307 374 APSSPAASAGRPT-----------RRRARAAVAGRARRRDATGRFpAGRPRPSPLDAGAASGAFYARYP 431
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
2104-2329 |
3.78e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 46.02 E-value: 3.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2104 SAIPASVNLADSRTPAAAAAMNLASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAAL------SLTGSGTPPTAA 2177
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALaaarqaSARGPGGAPAPA 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2178 NYPSSSRTPQAPTPANLVVGPRSAHGTAPVNIAGSRTPAGLAPTNLSSSRMAPALSGAnltSPRVPLSAYDRVSGRTSPl 2257
Cdd:PRK12323 452 PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASP---APAQPDAAPAGWVAESIP- 527
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 126157504 2258 mldrarsRTPPSAPSQSRMTSERERAPSPASRMVQASSQSLLPPAQDRPRSPVPSAFSDQSRSVVQTTPVAG 2329
Cdd:PRK12323 528 -------DPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLPVRG 592
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
284-496 |
5.20e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 45.28 E-value: 5.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 284 AAIPSSQEPVNPSSEASPTRGCSPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPESLKPTPAPGSRREiSSSPTSKN 363
Cdd:PRK12678 65 AAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE-AARRGAAR 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 364 RSHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWG-KSRSPQRRGRSRSPQRPG 442
Cdd:PRK12678 144 KAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDrRDRREQGDRREERGRRDG 223
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 126157504 443 WSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSR 496
Cdd:PRK12678 224 GDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGG 277
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
283-508 |
5.42e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 45.28 E-value: 5.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 283 LAAIPSSQEP-VNPSSEASPTRGCSPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPESLKPTPAPGSRREISSSPTS 361
Cdd:PRK12678 52 IAAIKEARGGgAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 362 KNRSHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRP 441
Cdd:PRK12678 132 ERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQ 211
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 126157504 442 GWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTpARRRSRSRTPARRRSRSR 508
Cdd:PRK12678 212 GDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRG-GRRGRRFRDRDRRGRRGG 277
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
2047-2256 |
8.25e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 44.87 E-value: 8.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2047 GTARPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTSAIPASVNLADSRTPAAAAAMNL 2126
Cdd:PRK12323 370 GGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPA 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2127 ASPRTAVAPSAVN---LADPRTPAASAVNLAGARTPAALAALSltGSGTPP---TAANYPSSSRTPQAPTPANLVVGPRS 2200
Cdd:PRK12323 450 PAPAPAAAPAAAArpaAAGPRPVAAAAAAAPARAAPAAAPAPA--DDDPPPweeLPPEFASPAPAQPDAAPAGWVAESIP 527
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 126157504 2201 AHGTAPvniagsrtPAGLAPTNLSSSRMAPALSGANLTSPRVPLSAYDRVSGRTSP 2256
Cdd:PRK12323 528 DPATAD--------PDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPD 575
|
|
| SF-CC1 |
TIGR01622 |
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ... |
415-512 |
1.48e-03 |
|
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.
Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 43.75 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 415 RRSRSAQRWGKSRSPQRRGRSRSPQRPGwSRSRNTQRRGRSRSARRgrshsrspatRGRSRSRTPARRGRSRSRTPaRRR 494
Cdd:TIGR01622 2 YRDRERERLRDSSSAGDRDRRRDKGRER-SRDRSRDRERSRSRRRD----------RHRDRDYYRGRERRSRSRRP-NRR 69
|
90
....*....|....*...
gi 126157504 495 SRSRTPARRRSRSRTPAR 512
Cdd:TIGR01622 70 YRPREKRRRRGDSYRRRR 87
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
2127-2335 |
1.64e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 43.71 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2127 ASPRTAVAPSAVNLADPRTPAASAVnlAGARTPAALAALSLTGSGTPPTAANYPSSSRTPQAPTPANLVVGPRSAHGTAP 2206
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAAPAAAA--PAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPA 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2207 VNIAGSRTPAGLAPTNLSSSRMAPALSgANLTSPRVPLSAYDRVSGRTSPLM-LDRARSRTPPSAPSQSRMTSERERAPS 2285
Cdd:PRK12323 450 PAPAPAAAPAAAARPAAAGPRPVAAAA-AAAPARAAPAAAPAPADDDPPPWEeLPPEFASPAPAQPDAAPAGWVAESIPD 528
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 126157504 2286 PASRMVQASSQSLLPPAqdrPRSPVPSAFSDQSRSVVQTTPVAGSQSLSS 2335
Cdd:PRK12323 529 PATADPDDAFETLAPAP---AAAPAPRAAAATEPVVAPRPPRASASGLPD 575
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
69-366 |
1.78e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.16 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 69 PEPPKPYSLVRETSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKK 148
Cdd:PHA03247 2702 PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR 2781
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 149 RKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKI------HTTALTGQSPPLASGHQGEGDAP--SVEPGAT 220
Cdd:PHA03247 2782 RLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASpagplpPPTSAQPTAPPPPPGPPPPSLPLggSVAPGGD 2861
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 221 NIQQPSSPAPSTKQSSSPYEDKDKKEKSAVRPSPSPERSSTGPELPAPTPllveqhvDSPRPLAAIPSSQEPVNPSSeAS 300
Cdd:PHA03247 2862 VRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQP-------QAPPPPQPQPQPPPPPQPQP-PP 2933
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 126157504 301 PTRGCSPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPESLKPTPAPGSRREISSSPTSKNRSH 366
Cdd:PHA03247 2934 PPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGH 2999
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
66-514 |
2.35e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.77 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 66 QIAPEPPKPYSLVRETsssRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSK 145
Cdd:PHA03247 2572 RPAPRPSEPAVTSRAR---RPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP 2648
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 146 DKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKIHTTALTGQSPPlasghqgeGDAPSVEPGATNIQQP 225
Cdd:PHA03247 2649 PERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPP--------PPTPEPAPHALVSATP 2720
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 226 SSPAPSTKQSSSPyedkdkkeksAVRPSPSPERSSTGPELPAPtpllvEQHVDSPRPLAAIPSSQEPVNPSSEASPTrgc 305
Cdd:PHA03247 2721 LPPGPAAARQASP----------ALPAAPAPPAVPAGPATPGG-----PARPARPPTTAGPPAPAPPAAPAAGPPRR--- 2782
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 306 SPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPESLKPTPAPGSRREISSSPTSKNRSHGRAKRDKSHSHT-----PS 380
Cdd:PHA03247 2783 LTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSvapggDV 2862
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 381 HRAGRSRSPATK---RGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRS 457
Cdd:PHA03247 2863 RRRPPSRSPAAKpaaPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPP 2942
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 126157504 458 ARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPaRRRSRSRTPARRRSRSRTPARRG 514
Cdd:PHA03247 2943 LAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVP-RFRVPQPAPSREAPASSTPPLTG 2998
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
2008-2286 |
2.72e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 43.30 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2008 TGGSmmdGPGPRIPDHPRSSVPENHAQSRIALALTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASR 2087
Cdd:PRK07003 363 TGGG---APGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRG 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2088 IPAASAAAMNLASARTSAIPASVNLADSRTPAAAAAMNlASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAALSL 2167
Cdd:PRK07003 440 DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSA-SAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASR 518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2168 TGSGTPPTAANYPSSSRTPQAPTPANlvvgpRSAHGTAPVNI---AGSRTPAGlaptnlsSSRMAPALSGANLTSPRVPL 2244
Cdd:PRK07003 519 EDAPAAAAPPAPEARPPTPAAAAPAA-----RAGGAAAALDVlrnAGMRVSSD-------RGARAAAAAKPAAAPAAAPK 586
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 126157504 2245 SAYDRVSGRTSPLMLDRARSRTPPSAPSQSRMTSERERAPSP 2286
Cdd:PRK07003 587 PAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPP 628
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
2068-2517 |
3.32e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.00 E-value: 3.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2068 PAPVPLMSLRTAPAANLAsriPAASAAAMNLASARTSAIPASvnlADSRTPAAAAAMNLASPRTAVAPSAVNLADP--RT 2145
Cdd:PHA03247 2557 PAAPPAAPDRSVPPPRPA---PRPSEPAVTSRARRPDAPPQS---ARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPppPS 2630
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2146 PAASAVNLAGARTPAALAALSLTGSGTPPTAANYPSSSRTPQAPTPANLVVGPRSAHGTAPVNIAGS--------RTPAG 2217
Cdd:PHA03247 2631 PSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSladpppppPTPEP 2710
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2218 LAPTNLSSSRMAPALSGANLTSPRVPLSAYDRVSGRTSPLMLDRARSRTPPSAPSQSRMTSERERAPSPASRMVQASSQS 2297
Cdd:PHA03247 2711 APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2298 LlppAQDRPRSPVPSAFSDQSRSVVQTTPVAGSQSLSSGTVAKSTSSASDHNGMLSGPAPGISHAEGGEPPASTGAQQ-P 2376
Cdd:PHA03247 2791 L---SESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRpP 2867
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2377 STLAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSslPAQPEVALKRVPSPTPVPKEAIREGRPQEP 2456
Cdd:PHA03247 2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPP--PPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 126157504 2457 TP------------------AKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQAL 2517
Cdd:PHA03247 2946 TTdpagagepsgavpqpwlgALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVSL 3024
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
217-348 |
3.40e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 42.84 E-value: 3.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 217 PGATNIQQPSSPAPStkQSSSPYEdkdkkEKSAVRPSPSPERSSTGPELPAPTPllVEQHVDSPRPLAAIPSSQEPVNPS 296
Cdd:PRK14971 370 SGGRGPKQHIKPVFT--QPAAAPQ-----PSAAAAASPSPSQSSAAAQPSAPQS--ATQPAGTPPTVSVDPPAAVPVNPP 440
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 126157504 297 SEASPTRGCSPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPESLKPTPA 348
Cdd:PRK14971 441 STAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGT 492
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
263-494 |
4.19e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 42.58 E-value: 4.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 263 PELPAPTPLLVEQHVDSPRPLAAIPSSQEPVNPSSEASPTRGCSPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPES 342
Cdd:PRK12678 68 ATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGE 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 343 LKPTPAPGSRREISSSPTSKNRSHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQR 422
Cdd:PRK12678 148 GGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRR 227
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 126157504 423 WGKSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARrgrshsrspatRGRSRSRTPARRGRSRSRTPARRR 494
Cdd:PRK12678 228 GRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGR-----------RFRDRDRRGRRGGDGGNEREPELR 288
|
|
| RSRP |
pfam17069 |
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown. |
340-508 |
5.76e-03 |
|
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.
Pssm-ID: 293674 [Multi-domain] Cd Length: 299 Bit Score: 41.30 E-value: 5.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 340 PESLKPTPAPGSRREISSS-PTSKNRSHGRAKRDKSHSHTPSHRAGRSRS-PATKRGRSRSRTPTKR---GHSRSRSPQW 414
Cdd:pfam17069 10 PGSPQEKKSPSTSSSGSSSrLSSRSRSRSSSRSSRSHSRSSSRFSSRSRSrPRRSRSRSRSRRRHQRkyrRYSRSYSRSR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 415 RRSRSAQRWGKSRSPQRRGRSRSPQRpgwSRSRNTQRRGRSRSARRGRSHSRSpatrGRSRSRTPARRGRSRSRTpaRRR 494
Cdd:pfam17069 90 SRSRRRRYYRRSRYRYSRRYYRSPSR---SRSRSRSRSRGRSYYAIWRGSRYY----GFGRTVYPERSPRWRSRS--RTR 160
|
170
....*....|....
gi 126157504 495 SRSRTPARRRSRSR 508
Cdd:pfam17069 161 SRSRTPFRLSEKER 174
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
2184-2594 |
7.87e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 41.70 E-value: 7.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2184 RTPQAPTPANLVVGPRSAHGTAPVNIAGSRTPAGLAPTNLSSSRMAPALSGANLTSPRVPLSAYDRVSGRTSPLMLDRAR 2263
Cdd:PHA03307 25 PATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREG 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2264 SRTPPSAPSqsrmTSERERAPSPASRmvqassqsllPPAQDRPRSPVPSAFSDQSRSVVQTTPVAGSQSLSSGTVAKSTS 2343
Cdd:PHA03307 105 SPTPPGPSS----PDPPPPTPPPASP----------PPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSR 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2344 SASDHNGMLSGPAPGIShaeggEPPASTGAQQPSTLAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEG 2423
Cdd:PHA03307 171 QAALPLSSPEETARAPS-----SPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESS 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2424 SSLPAQPEVALKRVPSPTPVPKEAIREGRPQEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2503
Cdd:PHA03307 246 GCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESS 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2504 SSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRQPSPQPSPRDLQSSERVSWRGQRGDS 2583
Cdd:PHA03307 326 SSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATG 405
|
410
....*....|.
gi 126157504 2584 HSPGHKRKETP 2594
Cdd:PHA03307 406 RFPAGRPRPSP 416
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1947-2523 |
9.08e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.85 E-value: 9.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 1947 ATPPATRNHS--GSRTPPVALSSSRMSCFSRPSMSPTPlDRCRSPGmlEPLGSARTPMsvlqQTGGSMMDGPGPRIPDHP 2024
Cdd:PHA03247 2558 AAPPAAPDRSvpPPRPAPRPSEPAVTSRARRPDAPPQS-ARPRAPV--DDRGDPRGPA----PPSPLPPDTHAPDPPPPS 2630
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2025 RSSVPENHAQSRIALA------LTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLR--TAPAANLAsRIPAASAAAM 2096
Cdd:PHA03247 2631 PSPAANEPDPHPPPTVppperpRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARptVGSLTSLA-DPPPPPPTPE 2709
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2097 NLASARTSAIPASVNLADSRTPAAAAAMNLASPRTAVAPSAVnlADPRTPAASAVNlAGARTPAALAALSLTGSGTPPTA 2176
Cdd:PHA03247 2710 PAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATP--GGPARPARPPTT-AGPPAPAPPAAPAAGPPRRLTRP 2786
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2177 ANYPSSSRTPQAPTPANLVVGPRSAHGTAPVnIAGSRTPAGLAPTNLSSSRMAPALsganltsPRVPLSAYDRVSGRTSP 2256
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAA-LPPAASPAGPLPPPTSAQPTAPPP-------PPGPPPPSLPLGGSVAP 2858
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2257 --LMLDRARSRTPPSAPSQSRMTSERERAPSPASRmvQASSQSLLPPAQDRPRSPVPSAfsdqsrsvvQTTPVAGSQSLS 2334
Cdd:PHA03247 2859 ggDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSR--STESFALPPDQPERPPQPQAPP---------PPQPQPQPPPPP 2927
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2335 SGTVAKSTSSASDhngmlSGPAPGISHAEGGEPpasTGAQQPSTLAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSS 2414
Cdd:PHA03247 2928 QPQPPPPPPPRPQ-----PPLAPTTDPAGAGEP---SGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGH 2999
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 2415 GSSSSDSEGSSLPAQPEVAlkrvpsptpvpkeairegrpqePTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2494
Cdd:PHA03247 3000 SLSRVSSWASSLALHEETD----------------------PPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDP 3057
|
570 580
....*....|....*....|....*....
gi 126157504 2495 SSSSSSSSSSSSPSPAKPGPQALPKPASP 2523
Cdd:PHA03247 3058 LPPEPHDPFAHEPDPATPEAGARESPSSQ 3086
|
|
| U2AF_lg |
TIGR01642 |
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ... |
429-512 |
9.83e-03 |
|
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.
Pssm-ID: 273727 [Multi-domain] Cd Length: 509 Bit Score: 41.03 E-value: 9.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126157504 429 PQRRGRSRSPQRP-GWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPA-----RRGRSRSRTPARRRSRSR-TPA 501
Cdd:TIGR01642 12 SRGRDRDRSSERPrRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRslrysSVRRSRDRPRRRSRSVRSiEQH 91
|
90
....*....|.
gi 126157504 502 RRRSRSRTPAR 512
Cdd:TIGR01642 92 RRRLRDRSPSN 102
|
|
| |
