|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
0e+00 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 511.66 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 1 MNPMVFAILLSSLGLGTALTFASSHWLLAWMGLEINTLAILPLMTQHHHPRAIEATTKYFLTQATAAAMILFASTTNAWM 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 81 SGEWDIHQLSHPVAAAVALMALALKIGLAPVHFWMPEVIQGLDLTTGLLLSTWQKLAPFALVVQVAPfAHPAMLTTLGVL 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAP-TNPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 161 STLIGGWGGLNQVQLRKVLAYSSIAHLGWMVLVLQFAPSLTLLALVVYILMTASAFLTFNVVQSTSVSVLATAWAKAPAL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 241 VALTSLVLLSLGGLPPLTGFMPKWLILQELTKQGIPLVATLAALTALLSLYFYLRLCYAMSLTTSPNTTLATAPWRVCTL 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
330 340
....*....|....*....|....*..
gi 28881929 321 RPSLPLSATSVAALALLPVTPAFATFF 347
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILALL 346
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-268 |
6.72e-17 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 79.66 E-value: 6.72e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 23 SSHWLLAWMGLEINTLAILPLMT-QHHHPRAIEATTKYFLTQATAAAMILFASTTNAWMSGEWDIHQLSHPVAAAVALMA 101
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 102 LAL-----------KIGLAPVHFWMPEV-IQGLDLTTGLLLSTWQKLAPFALVVQVAPFAHPA-----MLTTLGVLSTLI 164
Cdd:pfam00361 81 LLLlfllilvgflfKSAQVPFHTWLPDAyEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 165 GGWGGLNQVQLRKVLAYSSIAHLGWMVLVL----QFAPSLTLLALVVYILMTASAFLTFNVVQSTSVSV-----LATAWA 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrnirdYGGLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 28881929 236 KAPALVALTSLVLLSLGGLPPLTGFMPKWLILQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
6-300 |
8.29e-17 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 80.93 E-value: 8.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 6 FAILLSSLgLGTALTFASSHWLLAWMGLEINTLAILPL-MTQHHHPRAIEATTKYFLTQATAAAMILFASTTNAWMSGEW 84
Cdd:COG1007 105 YALLLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSL 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 85 DIHQLSHPVAAAVALMALAL------------KIGLAPVHFWMPEVIQGLDLTTGLLLSTWQKLAPFALVVQVAPFAHPA 152
Cdd:COG1007 184 NLAGIAAALAAGGANSPLLLlglvlvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPG 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 153 -------MLTTLGVLSTLIGGWGGLNQVQLRKVLAYSSIAHLGWMVLVL----QFAPSLTLLALVVYILMTASAFLTFNV 221
Cdd:COG1007 264 laadwqlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVILL 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 222 VQ-----STSVSVLATAWAKAPALVALTSLVLLSLGGLPPLTGFMPKWLILQELTKQGIPLVATLAALTALLSLYFYLRL 296
Cdd:COG1007 344 LSrkggeAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
|
....
gi 28881929 297 CYAM 300
Cdd:COG1007 424 VKAM 427
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
8-306 |
1.57e-13 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 71.13 E-value: 1.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 8 ILLSSLGLGtaLTFASSHWLLAWMGLEINTLAILPLMT-QHHHPRAIEATTKYFLTQATAAAMILFASTTNAWMSGEWDI 86
Cdd:TIGR01770 108 LLFALLGIF--LLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNF 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 87 HQLSHPVAAAVALMALAL------------KIGLAPVHFWMPEVIQGLDLTTGLLLSTWQKLAPFALVVQV---APFAHP 151
Cdd:TIGR01770 186 EDLLLFLSNGMLNISLLLlgivlilvgllfKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyILFGFS 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 152 A----MLTTLGVLSTLIGGWGGLNQVQLRKVLAYSSIAHLGWMVLVLqFAPSLTLLA-----LVVYILMTASAFLTFNVV 222
Cdd:TIGR01770 266 EawqiFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGL-LAGTLEGIKavlfyIFIYALMSLGAFGVLSLL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 223 QST------SVSVLATAWAKAPALVALTSLVLLSLGGLPPLTGFMPKWLILQELTKQGIPLVATLAALTALLSLYFYLRL 296
Cdd:TIGR01770 345 RSYkdewieYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
330
....*....|
gi 28881929 297 CYAMSLTTSP 306
Cdd:TIGR01770 425 VKVMYFDKPE 434
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
0e+00 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 511.66 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 1 MNPMVFAILLSSLGLGTALTFASSHWLLAWMGLEINTLAILPLMTQHHHPRAIEATTKYFLTQATAAAMILFASTTNAWM 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 81 SGEWDIHQLSHPVAAAVALMALALKIGLAPVHFWMPEVIQGLDLTTGLLLSTWQKLAPFALVVQVAPfAHPAMLTTLGVL 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAP-TNPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 161 STLIGGWGGLNQVQLRKVLAYSSIAHLGWMVLVLQFAPSLTLLALVVYILMTASAFLTFNVVQSTSVSVLATAWAKAPAL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 241 VALTSLVLLSLGGLPPLTGFMPKWLILQELTKQGIPLVATLAALTALLSLYFYLRLCYAMSLTTSPNTTLATAPWRVCTL 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
330 340
....*....|....*....|....*..
gi 28881929 321 RPSLPLSATSVAALALLPVTPAFATFF 347
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILALL 346
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
5.98e-135 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 387.74 E-value: 5.98e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 1 MNPMVFAILLSSLGLGTALTFASSHWLLAWMGLEINTLAILPLMTQHHHPRAIEATTKYFLTQATAAAMILFASTTNAWM 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 81 SGEWDIHQLSHPVAAAVALMALALKIGLAPVHFWMPEVIQGLDLTTGLLLSTWQKLAPFALVVQVAPFAHPAMLTTLGVL 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 161 STLIGGWGGLNQVQLRKVLAYSSIAHLGWMVLVLQFAPSLTLLALVVYILMTASAFLTFNVVQSTSVSVLATAWAKAPAL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 241 VALTSLVLLSLGGLPPLTGFMPKWLILQELTKQGIPLVATLAALTALLSLYFYLRLCYAMSLTTSPNTTLATAPWRVCTl 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKN- 319
|
330 340
....*....|....*....|....*..
gi 28881929 321 RPSLPLSATSVAALALLPVTPAFATFF 347
Cdd:MTH00070 320 KTNNLLSLTIILSLMLLPITPTILNLF 346
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-345 |
1.18e-120 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 351.43 E-value: 1.18e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 1 MNPMVFAILLSSLGLGTALTFASSHWLLAWMGLEINTLAILPLMTQHHHPRAIEATTKYFLTQATAAAMILFASTTNAWM 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 81 SGEWDIHQLSHPVAAAVALMALALKIGLAPVHFWMPEVIQGLDLTTGLLLSTWQKLAPFALVVQVAPFAHPAMLTTLGVL 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 161 STLIGGWGGLNQVQLRKVLAYSSIAHLGWMVLVLQFAPSLTLLALVVYILMTASAFLTFNVVQSTSVSVLATAWAKAPAL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 241 VALTSLVLLSLGGLPPLTGFMPKWLILQELTKQGIPLVATLAALTALLSLYFYLRLCYAMSLTTSPNTTLATAPWRVcTL 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRT-KP 319
|
330 340
....*....|....*....|....*
gi 28881929 321 RPSLPLSATSVAALALLPVTPAFAT 345
Cdd:MTH00112 320 KKNTLTATLTTLSTLLLPLSPMILT 344
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
6.07e-111 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 326.80 E-value: 6.07e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 1 MNPMVFAILLSSLGLGTALTFASSHWLLAWMGLEINTLAILPLMTQHHHPRAIEATTKYFLTQATAAAMILFASTTNAWM 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 81 SGEWDIHQLSHPVAAAVALMALALKIGLAPVHFWMPEVIQGLDLTTGLLLSTWQKLAPFALVVQVAPFAHPAMLTTLGVL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 161 STLIGGWGGLNQVQLRKVLAYSSIAHLGWMVLVLQFAPSLTLLALVVYILMTASAFLTFNVVQSTSVSVLATAWAKAPAL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 241 VALTSLVLLSLGGLPPLTGFMPKWLILQELTKQGIPLVATLAALTALLSLYFYLRLCYAMSLTTSPNTTLATAPWRVCTL 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 28881929 321 RPSLPLSATSVAALALLPVTPAFATFF 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
4.25e-99 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 296.88 E-value: 4.25e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 1 MNPMVFAILLSSLGLGTALTFASSHWLLAWMGLEINTLAILPLMTQHHHPRAIEATTKYFLTQATAAAMILFASTTNAWM 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 81 SGEWDIHQLSHPVAAAVALMALALKIGLAPVHFWMPEVIQGLDLTTGLLLSTWQKLAPFALVVQVAPFAHPAMLTTLGVL 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 161 STLIGGWGGLNQVQLRKVLAYSSIAHLGWMVLVLQFAPSLTLLALVVYILMTASAFLTFNVVQSTSVSVLATAWAKAPAL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 241 VALTSLVLLSLGGLPPLTGFMPKWLILQELTKQGIPLVATLAALTALLSLYFYLRLCYAMSLTTSPNTTLATAPWRVCTL 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320
|
330 340
....*....|....*....|....*..
gi 28881929 321 rPSLPLSATSVAALALLPVTPAFATFF 347
Cdd:MTH00200 321 -SNLLVGLLLLLSILGLPLTPQLLFLF 346
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-340 |
7.03e-80 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 247.54 E-value: 7.03e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 1 MNPMVFAILLSSLGLGTALTFASSHWLLAWMGLEINTLAILPLMTQHHHPRAIEATTKYFLTQATAAAMILFASTTNAWM 80
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 81 SGEWDIHQLSHPVAAAVALMALALKIGLAPVHFWMPEVIQGLDLTTGLLLSTWQKLAPFALVVQVAPFAHPAMLTTLGVL 160
Cdd:MTH00041 81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 161 STLIGGWGGLNQVQLRKVLAYSSIAHLGWMVLVLQFAPSLTLLALVVYILMTASAFLTFNVVQSTSVSVLATAWAKAPAL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 241 VALTSLVLLSLGGLPPLTGFMPKWLILQELTKQGIPLVATLAALTALLSLYFYLRLCYAMSLTTSPNTTLATAPWRVCTL 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320
|
330 340
....*....|....*....|....*
gi 28881929 321 RPSLP-----LSATSVAALALLPVT 340
Cdd:MTH00041 321 ITVYGvilsiLSSISILGLLLIPLF 345
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-309 |
2.13e-45 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 158.06 E-value: 2.13e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 1 MNPMVFaILLSSLGLGTALTFASSHWLLAWMGLEINTLAILPLMTQHHHPRAIEATTKYFLTQATAAAMILFASTTNAWM 80
Cdd:MTH00160 3 MNSSKL-LFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 81 SGewdihqLSHPVAAAVALMALALKIGLAPVHFWMPEVIQGLDLTTGLLLSTWQKLAPFALVVQvapFAHPAMLTTLGVL 160
Cdd:MTH00160 82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSY---LINNNFIIIIIIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 161 STLIGGWGGLNQVQLRKVLAYSSIAHLGWMVLVLQFAPSLTLLALVVYILMTASAFLTFNVVQSTSVSVLATAWAKAPAL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 28881929 241 VALTSLVLLSLGGLPPLTGFMPKWLILQELTKQGIPLVATLAALTALLSLYFYLRLCYAMSLTTSPNTT 309
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNK 301
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
7-314 |
6.28e-43 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 151.47 E-value: 6.28e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 7 AILLSSLGLGTALTFASSHWLLAWMGLEINTLAILPLMTQHHHPRAIEATTKYFLTQATAAAMILFASTTNawmsgeWDI 86
Cdd:MTH00011 9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMM------WSF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 87 HQLSHPVAAAVALMALALKIGLAPVHFWMPEVIQGLDLTTGLLLSTWQKLAPFALVVQVAPFAHPAMLTTLGVLSTLIGG 166
Cdd:MTH00011 83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 167 WGGLNQVQLRKVLAYSSIAHLGWMVLVLQFAPSLTLLALVVYILMTASAFLTFNVVQSTSVSVLATAWAKAPALVALTSL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 28881929 247 VLLSLGGLPPLTGFMPKWLILQELTKQGIPLVATLAALTALLSLYFYLRLCYAMSLTTSPNTTLATAP 314
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAP 310
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
10-305 |
1.87e-40 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 144.64 E-value: 1.87e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 10 LSSLGLGTALTFASSHWLLAWMGLEINTLAILPLMTQHHHPRAIEATTKYFLTQATAAAMILFASTTNAWMSGEWDIHQL 89
Cdd:MTH00144 10 LFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSMSL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 90 ShpvaaavaLMALALKIGLAPVHFWMPEVIQGLDLTTGLLLSTWQKLAPFALVVQVAPFAHPAM-LTTLGVLSTLIGGWG 168
Cdd:MTH00144 90 L--------LLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYlLCVISVLSALVGSIG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 169 GLNQVQLRKVLAYSSIAHLGWMVLVLQFAPSLTLLALVVYILMTASAFLTFNVVQSTSVSVLaTAWAKAPALVALTSLVL 248
Cdd:MTH00144 162 GLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL-GSLKPSYKTGLSIISLL 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 28881929 249 LSLGGLPPLTGFMPKWLILQELTKQGIPLVATLAALTALLSLYFYLRLCYAMSLTTS 305
Cdd:MTH00144 241 LSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSS 297
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-298 |
4.47e-36 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 132.87 E-value: 4.47e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 8 ILLSSLGLGTALTFASSHWLLAWMGLEINTLAILPLMTQHHHPRAIEATTKYFLTQATAAAMILFAsttNAWMSGEWDIH 87
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMG---GSLSFSNLYLS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 88 QLSHpvaaAVALMALALKIGLAPVHFWMPEVIQGLDLTTGLLLSTWQKLAPFALVVQVApfAHPAMLTTLGVLSTLIGGW 167
Cdd:MTH00197 79 LLSV----VLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNS--SSFMGLLICSVLSSLIGGI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 168 GGLNQVQLRKVLAYSSIAHLGWMVLVLQFAPSLTLLALVVYILMTASAFLTFNVVQSTSVSVLATAWAKAPALVALTSLV 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 28881929 248 LLSLGGLPPLTGFMPKWLILQELTKQGIPLVATLAALTALLSLYFYLRLCY 298
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-268 |
6.72e-17 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 79.66 E-value: 6.72e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 23 SSHWLLAWMGLEINTLAILPLMT-QHHHPRAIEATTKYFLTQATAAAMILFASTTNAWMSGEWDIHQLSHPVAAAVALMA 101
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 102 LAL-----------KIGLAPVHFWMPEV-IQGLDLTTGLLLSTWQKLAPFALVVQVAPFAHPA-----MLTTLGVLSTLI 164
Cdd:pfam00361 81 LLLlfllilvgflfKSAQVPFHTWLPDAyEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 165 GGWGGLNQVQLRKVLAYSSIAHLGWMVLVL----QFAPSLTLLALVVYILMTASAFLTFNVVQSTSVSV-----LATAWA 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrnirdYGGLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 28881929 236 KAPALVALTSLVLLSLGGLPPLTGFMPKWLILQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
6-300 |
8.29e-17 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 80.93 E-value: 8.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 6 FAILLSSLgLGTALTFASSHWLLAWMGLEINTLAILPL-MTQHHHPRAIEATTKYFLTQATAAAMILFASTTNAWMSGEW 84
Cdd:COG1007 105 YALLLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSL 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 85 DIHQLSHPVAAAVALMALAL------------KIGLAPVHFWMPEVIQGLDLTTGLLLSTWQKLAPFALVVQVAPFAHPA 152
Cdd:COG1007 184 NLAGIAAALAAGGANSPLLLlglvlvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPG 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 153 -------MLTTLGVLSTLIGGWGGLNQVQLRKVLAYSSIAHLGWMVLVL----QFAPSLTLLALVVYILMTASAFLTFNV 221
Cdd:COG1007 264 laadwqlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVILL 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 222 VQ-----STSVSVLATAWAKAPALVALTSLVLLSLGGLPPLTGFMPKWLILQELTKQGIPLVATLAALTALLSLYFYLRL 296
Cdd:COG1007 344 LSrkggeAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
|
....
gi 28881929 297 CYAM 300
Cdd:COG1007 424 VKAM 427
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
15-296 |
1.28e-16 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 80.07 E-value: 1.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 15 LGTALTFASSHWLLAWMGLEINTLAILPLMTQHHHP-RAIEATTKYFLTQATAAAMILFASTTNAWMSGEWDIH------ 87
Cdd:MTH00196 4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSyinlvl 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 88 -------QLSHPVAAAVALMALALKIGLAPVHFWMPEVIQGLDLTTGLLLSTWQKLAPFALVVQVAPfaHPAMLTTLGVL 160
Cdd:MTH00196 84 nsgqsfsSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGL--NVNILLIGGLF 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 161 STLIGGWGGLNQVQLRKVLAYSSIAHLGWMVLVLQFAP----SLTLLALVVYILMTASAF---LTFNVVQSTSVSvLATA 233
Cdd:MTH00196 162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKNLIIE-FSGL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 28881929 234 WAKAPALVALTSLVLLSLGGLPPLTGFMPKWLILQELTKQGIPLVATLAALTALLSLYFYLRL 296
Cdd:MTH00196 241 SRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
8-306 |
1.57e-13 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 71.13 E-value: 1.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 8 ILLSSLGLGtaLTFASSHWLLAWMGLEINTLAILPLMT-QHHHPRAIEATTKYFLTQATAAAMILFASTTNAWMSGEWDI 86
Cdd:TIGR01770 108 LLFALLGIF--LLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNF 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 87 HQLSHPVAAAVALMALAL------------KIGLAPVHFWMPEVIQGLDLTTGLLLSTWQKLAPFALVVQV---APFAHP 151
Cdd:TIGR01770 186 EDLLLFLSNGMLNISLLLlgivlilvgllfKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyILFGFS 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 152 A----MLTTLGVLSTLIGGWGGLNQVQLRKVLAYSSIAHLGWMVLVLqFAPSLTLLA-----LVVYILMTASAFLTFNVV 222
Cdd:TIGR01770 266 EawqiFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGL-LAGTLEGIKavlfyIFIYALMSLGAFGVLSLL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 223 QST------SVSVLATAWAKAPALVALTSLVLLSLGGLPPLTGFMPKWLILQELTKQGIPLVATLAALTALLSLYFYLRL 296
Cdd:TIGR01770 345 RSYkdewieYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
330
....*....|
gi 28881929 297 CYAMSLTTSP 306
Cdd:TIGR01770 425 VKVMYFDKPE 434
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
6-267 |
2.61e-13 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 70.43 E-value: 2.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 6 FAILLSSLGLGTALTFASSHWLLAWMGLEINTLAILPLMT-QHHHPRAIEATTKYFLTQATAAAMILFASTTNAWMSGEW 84
Cdd:MTH00199 99 SPILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGET 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 85 DIHQ----LSHPVAAAVALMALALKIGLAPVHFWMPEVIQGLDLTTGLLLSTWQKLAPFALVVQVAPFAHPAMLTtlGVL 160
Cdd:MTH00199 179 SIQGinsiLTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVL 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 161 STLIGGWGGLNQVQLRKVLAYSSIAHLG---WMVLVLQFAP-SLTLLALVVYILMTASAF---LTFNVVQSTSVSVLATA 233
Cdd:MTH00199 257 SIIYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFsiiLSLKLTKGLIVEVSGLS 336
|
250 260 270
....*....|....*....|....*....|....
gi 28881929 234 wAKAPALVALTSLVLLSLGGLPPLTGFMPKWLIL 267
Cdd:MTH00199 337 -RKNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
5-301 |
1.75e-11 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 64.78 E-value: 1.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 5 VFAILLSSLGLGTALTFASSHWLLAWMGLEINTLAILPLMTQHHHPRAIEATTKYFLTQATAAAMILFASTTNAWMSGEW 84
Cdd:COG0651 108 RFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTL 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 85 DIHQLSHPVAAAVALMALA----------LKIGLAPVHFWMPEVIQGLDLTTGLLLS-TWQKLAPFALV--------VQV 145
Cdd:COG0651 188 NMADLAARLAELDPGLLLAafalllvgfgIKAALFPLHFWLPDAYPAAPSPVSALLSgLLTKVGVYAILrvltllfgADP 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 146 APFAHPAMLTtLGVLSTLIGGWGGLNQVQLRKVLAYSSIAHLGWMVLVLQFAPSLTLLALVVYI----LMTASAFLTFNV 221
Cdd:COG0651 268 ALFLGTLLLV-LGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAAGA 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 222 VQ----STSVSVLATAWAKAPALVALTSLVLLSLGGLPPLTGFMPKWLILQELTKQGIPLVATLAALTALLSLYFYLRLC 297
Cdd:COG0651 347 IEratgTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIF 426
|
....
gi 28881929 298 YAMS 301
Cdd:COG0651 427 GRAQ 430
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
8-338 |
3.75e-11 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 64.07 E-value: 3.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 8 ILLSSLGlgtALTFASS-HWLLAWMGLEINTLAILPL-MTQHHHPRAIEATTKYFLTQATAAAMILFASTTNAWMSGEWD 85
Cdd:PRK05777 109 VLFALLG---MMVMVSAnDLLTLFLGLELLSLPLYALaALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLS 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 86 IHQLSHPVAAAVALMALAL------------KIGLAPVHFWMPEVIQGLDLTTGLLLSTWQKLAPFALVVQVAPFAHPA- 152
Cdd:PRK05777 186 FAGIAKALADGSGNSLLLLfglvfllvglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLVVAFGGl 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 153 ------MLTTLGVLSTLIGGWGGLNQVQLRKVLAYSSIAHLGWMVLVL----QFAPSLTLLALVVYILMTASAFLTFNVV 222
Cdd:PRK05777 266 sedwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLaagtAEGYSAVLFYLLAYLFMTLGAFGVISLL 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 223 -----QSTSVSVLATAWAKAPALVALTSLVLLSLGGLPPLTGFMPKWLILQELTKQGIPLVATLAALTALLSLYFYLRLC 297
Cdd:PRK05777 346 rrkggEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVI 425
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 28881929 298 YAMSLTTSPNTTLATAPWRVctLRPSLPLSATSVAALALLP 338
Cdd:PRK05777 426 KLMYFDEPPRDAPVNWPLSA--GGAVLSVSALLVLVLGIFP 464
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
291-341 |
3.09e-09 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 52.26 E-value: 3.09e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 28881929 291 YFYLRLCYAMSLTTSPNTTLATAPWRVCTLRPSLPLSATSVAALALLPVTP 341
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
6-222 |
4.01e-08 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 54.86 E-value: 4.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 6 FAILLSsLGLGTALTFASSHWLLAWMGLEINTLAILPLMTQHHHPRAI---------EATTKYFLTQATAAAMILFAS-- 74
Cdd:MTH00198 191 FALVLI-VGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCal 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 75 ----TTNAWMSGE--------WDIHQLSHPVAAAVALMALALKIGLAPVHFWMPEVIQGLDLTTGLLLSTWQKLAPFALV 142
Cdd:MTH00198 270 yfgfTGNEGMLGTilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 143 VQVAPFAHpaMLTTLGVLSTLIGGWGGLNQVQLRKVLAYSSIAHLGWMVLVLQFAPSLTLLALVVYILM-TASAFLTFNV 221
Cdd:MTH00198 350 TSLVITSK--LLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTyLVSALASFTV 427
|
.
gi 28881929 222 V 222
Cdd:MTH00198 428 I 428
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-220 |
1.52e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 40.47 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 33 LEINTLAILPLMTQHHH-PRAIEATTKYFLTQATAAAMILFASttnAWMSGEWDIHQLSHPVAAAVALMALALKIGLA-- 109
Cdd:PRK08376 150 LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMSENPTVVAKIALAlf 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 110 -----------PVHFWMPEVIQGLDLTTGLLLSTWQKLAPFALV--------VQVAPFAHPAMLTTLGVLSTLIGGWGGL 170
Cdd:PRK08376 227 iaglamksgavPVHMWLPDAYPAAPSSISAMLLVIKQAGLYALArvlfsiygPAINLATVGWVIIILGCLTMFVGVAMAV 306
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 28881929 171 NQVQLRKVLAYSSIAHLGWMVLVLQF---APSLTLLALVVYILMTASAFLTFN 220
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLLGLGVglaALGDPAMASYGEIALAGGIYHIVN 359
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
105-268 |
2.47e-03 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 39.54 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 105 KIGLAPVHFWMPEV-IQGLDLTTGLLLSTWQKLAPFALVV---QVAPFAHPAMLTTLGVLST---LIGGWGGLNQVQLRK 177
Cdd:TIGR01972 216 KVPLFPLHTWLPDAhVEAPTAGSVILAGVLLKMGTYGFLRfnlPLFPDASLYFAPVLAALGViaiIYGALIALAQTDIKR 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 178 VLAYSSIAHLGWMVLVLQFAPSLTLLALVVYI----LMTASAFLTFNVVQ----STSVSVLATAWAKAPALVALTSLVLL 249
Cdd:TIGR01972 296 LIAYSSISHMGFVLLGIFSFNELGISGAVFQMishgLITAALFLLVGVLYerahTRDIAKYGGLANKMPVLAAFFMLFAM 375
|
170
....*....|....*....
gi 28881929 250 SLGGLPPLTGFMPKWLILQ 268
Cdd:TIGR01972 376 ASLGLPGTSGFVGEFLILL 394
|
|
| ND5 |
MTH00032 |
NADH dehydrogenase subunit 5; Provisional |
111-227 |
2.88e-03 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214407 [Multi-domain] Cd Length: 669 Bit Score: 39.56 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 111 VHFWMPEVIQGLDLTTGLLLSTWQKLAPFALVVQVAPFAHPAMLTTL-----GVLSTLIGGWGGLNQVQLRKVLAYSSIA 185
Cdd:MTH00032 244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLiitifGALTAFFAATVGLVQNDLKKVIAYSTCS 323
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 28881929 186 HLGWMVLVLQFAPS--LTLLALVVYILMTASAFLTF-NVVQSTSV 227
Cdd:MTH00032 324 QLGYMVLIIGIEGShnVGLFHLVNHAFFKALLFLSAgSVIHSTTV 368
|
|
| PRK06473 |
PRK06473 |
NADH-quinone oxidoreductase subunit M; |
105-222 |
3.73e-03 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 235810 [Multi-domain] Cd Length: 500 Bit Score: 38.91 E-value: 3.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 105 KIGLAPVHFWMPEV-IQGLDLTTGLLLSTWQKLAPFALV-----------VQVAPFahpamLTTLGVLSTLIGGWGGLNQ 172
Cdd:PRK06473 218 KIPLVPFHTWLPDAhVEASTPVSVLLAGVLLKLGTYGLLrfgvglfpeawVYLAPW-----LATWAVVSVLYGASCAIAQ 292
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 28881929 173 VQLRKVLAYSSIAHLGWMVLVLQFAPSLTLLA----LVVYILMTASAFLTFNVV 222
Cdd:PRK06473 293 KDMKKMVAYSSIGHMGYILLAAAAATPLSILAavfqMISHGLISALLFLLVGVV 346
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
154-194 |
4.34e-03 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 38.98 E-value: 4.34e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 28881929 154 LTTLGVLSTLIGGWGGLNQVQLRKVLAYSSIAHLGWMVLVL 194
Cdd:COG1009 278 VAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
105-210 |
4.49e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 38.71 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 105 KIGLAPVHFWMPEVIQGLDLTTGLLLS-TWQKLAPFAL------VVQVAPFAHPAMLT---TLGVLSTLIGGWGGLNQVQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPPVVTALLSgLVTKVAVYALiriyftVFGGDFRFALGLGWllaVLALLSMLVGSLAALGQDD 294
|
90 100 110
....*....|....*....|....*....|....*.
gi 28881929 175 LRKVLAYSSIAHLGWMVLVLQFAPSLTLLALVVYIL 210
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLL 330
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
6-300 |
6.75e-03 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 38.11 E-value: 6.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 6 FAILLSSLGLGTALTFASSHWLLAWMGLEinTLAILP-LMTQH--HHPRAIEATTKYFLTQATAAAMILFASTTNAWMS- 81
Cdd:PRK02504 112 FAAILLTATLGGMFLSGATELVMIFISLE--TLSIASyLLTGYmkRDPRSNEAALKYLLIGAASSAIFLYGSSLLYGLSg 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 82 GEWDIHQLSHPVAAAVALMALAL----------KIGLAPVHFWMPEVIQGLDLTTGLLLSTWQKLAPFALVVQVAPFAHP 151
Cdd:PRK02504 190 GSTQLSAIALALITSPSLGLALAlvfviagiafKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFP 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 152 AM-------LTTLGVLSTLIGGWGGLNQVQLRKVLAYSSIAHLGWMVLVL----QFAPSLTLLALVVYILMTASAFLT-- 218
Cdd:PRK02504 270 SFdeqwkllFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLvagtEAGYASMVFYLLAYLFMNLGAFACvi 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28881929 219 -FNVVQSTS-VSVLATAWAKAPALVALTSLVLLSLGGLPPLTGFMPKWLILQELTKQGIPLVATLAALTALLSLYFYLRL 296
Cdd:PRK02504 350 lFSLRTGTDqISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRV 429
|
....
gi 28881929 297 CYAM 300
Cdd:PRK02504 430 IKMM 433
|
|
| |
