NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|50080205|ref|NP_796109|]
View 

alpha28-takusan [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Takusan super family cl04778
Takusan; This domain is named takusan, which is a Japanese word meaning 'many'. Members of ...
 1-56 1.20e-08

Takusan; This domain is named takusan, which is a Japanese word meaning 'many'. Members of this family regulate synaptic activity.


The actual alignment was detected with superfamily member pfam04822:

Pssm-ID: 461445  Cd Length: 85  Bit Score: 49.18  E-value: 1.20e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 50080205     1 MRKISNDMEEMGGILELYIYEDLNY----RMNTEFNIIKSQHEKTMLDMNEMIQSIIVSM 56
Cdd:pfam04822  26 LQLITNERNELRDILALYTEGDLNDrpyhRLNPEYEILKLQHEKVMSDLQKLENEISEAL 85
 
Name Accession Description Interval E-value
Takusan pfam04822
Takusan; This domain is named takusan, which is a Japanese word meaning 'many'. Members of ...
 1-56 1.20e-08

Takusan; This domain is named takusan, which is a Japanese word meaning 'many'. Members of this family regulate synaptic activity.


Pssm-ID: 461445  Cd Length: 85  Bit Score: 49.18  E-value: 1.20e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 50080205     1 MRKISNDMEEMGGILELYIYEDLNY----RMNTEFNIIKSQHEKTMLDMNEMIQSIIVSM 56
Cdd:pfam04822  26 LQLITNERNELRDILALYTEGDLNDrpyhRLNPEYEILKLQHEKVMSDLQKLENEISEAL 85
 
Name Accession Description Interval E-value
Takusan pfam04822
Takusan; This domain is named takusan, which is a Japanese word meaning 'many'. Members of ...
 1-56 1.20e-08

Takusan; This domain is named takusan, which is a Japanese word meaning 'many'. Members of this family regulate synaptic activity.


Pssm-ID: 461445  Cd Length: 85  Bit Score: 49.18  E-value: 1.20e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 50080205     1 MRKISNDMEEMGGILELYIYEDLNY----RMNTEFNIIKSQHEKTMLDMNEMIQSIIVSM 56
Cdd:pfam04822  26 LQLITNERNELRDILALYTEGDLNDrpyhRLNPEYEILKLQHEKVMSDLQKLENEISEAL 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH