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Conserved domains on  [gi|37674242|ref|NP_932763|]
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bone marrow stromal antigen 2 [Mus musculus]

Protein Classification

BST2 domain-containing protein( domain architecture ID 11245197)

BST2 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BST2 pfam16716
Bone marrow stromal antigen 2;
54-143 1.51e-42

Bone marrow stromal antigen 2;


:

Pssm-ID: 465245 [Multi-domain]  Cd Length: 91  Bit Score: 136.80  E-value: 1.51e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674242    54 NSVACRDGLRAQAECRNTTHLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQ 133
Cdd:pfam16716   1 NSEACKDGLRAEQECRNVTHLLQRQLTQAQDGLLQAEAQAATCNQTVVTLKASLEKEKAQGQKQQARVQELQGEIKTLNQ 80

                          90
                  ....*....|
gi 37674242   134 ELENLRIQKE 143
Cdd:pfam16716  81 QLQDALAEVE 90
 
Name Accession Description Interval E-value
BST2 pfam16716
Bone marrow stromal antigen 2;
54-143 1.51e-42

Bone marrow stromal antigen 2;


Pssm-ID: 465245 [Multi-domain]  Cd Length: 91  Bit Score: 136.80  E-value: 1.51e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674242    54 NSVACRDGLRAQAECRNTTHLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQ 133
Cdd:pfam16716   1 NSEACKDGLRAEQECRNVTHLLQRQLTQAQDGLLQAEAQAATCNQTVVTLKASLEKEKAQGQKQQARVQELQGEIKTLNQ 80

                          90
                  ....*....|
gi 37674242   134 ELENLRIQKE 143
Cdd:pfam16716  81 QLQDALAEVE 90
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 78-162 6.01e-04

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 39.43  E-value: 6.01e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674242  78 QLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRIQ--------KETSSTVQ 149
Cdd:COG3883  17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEieerreelGERARALY 96

                        90
                ....*....|...
gi 37674242 150 VNSGSSMVVSSLL 162
Cdd:COG3883  97 RSGGSVSYLDVLL 109
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 75-143 1.72e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 38.08  E-value: 1.72e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 37674242    75 LQRQLTRTQDSLLQAETQANScnltvvtLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRIQKE 143
Cdd:TIGR04523 244 KTTEISNTQTQLNQLKDEQNK-------IKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE 305
PRK12705 PRK12705
hypothetical protein; Provisional
 33-143 5.84e-03

hypothetical protein; Provisional


Pssm-ID: 237178 [Multi-domain]  Cd Length: 508  Bit Score: 36.23  E-value: 5.84e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674242   33 ILVVLFGVTLVILTIYFAVTANSVACRDGLRAQAEcrnttHLLQRQLTRTQDSLLQA-ETQANSCNLTVVTLQESLEKKV 111
Cdd:PRK12705  13 LIGLLLGVLVVLLKKRQRLAKEAERILQEAQKEAE-----EKLEAALLEAKELLLRErNQQRQEARREREELQREEERLV 87

                         90       100       110
                 ....*....|....*....|....*....|..
gi 37674242  112 SQALEQQARIKELENEVTKLNQELENLRIQKE 143
Cdd:PRK12705  88 QKEEQLDARAEKLDNLENQLEEREKALSAREL 119
 
Name Accession Description Interval E-value
BST2 pfam16716
Bone marrow stromal antigen 2;
54-143 1.51e-42

Bone marrow stromal antigen 2;


Pssm-ID: 465245 [Multi-domain]  Cd Length: 91  Bit Score: 136.80  E-value: 1.51e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674242    54 NSVACRDGLRAQAECRNTTHLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQ 133
Cdd:pfam16716   1 NSEACKDGLRAEQECRNVTHLLQRQLTQAQDGLLQAEAQAATCNQTVVTLKASLEKEKAQGQKQQARVQELQGEIKTLNQ 80

                          90
                  ....*....|
gi 37674242   134 ELENLRIQKE 143
Cdd:pfam16716  81 QLQDALAEVE 90
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 78-162 6.01e-04

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 39.43  E-value: 6.01e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674242  78 QLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRIQ--------KETSSTVQ 149
Cdd:COG3883  17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEieerreelGERARALY 96

                        90
                ....*....|...
gi 37674242 150 VNSGSSMVVSSLL 162
Cdd:COG3883  97 RSGGSVSYLDVLL 109
Uso1_p115_C pfam04871
Uso1 / p115 like vesicle tethering protein, C terminal region; Also known as General vesicular ...
 63-143 6.55e-04

Uso1 / p115 like vesicle tethering protein, C terminal region; Also known as General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerization, and a short C-terminal acidic region. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the golgi stack. This family consists of the acidic C-terminus, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another.


Pssm-ID: 461461 [Multi-domain]  Cd Length: 121  Bit Score: 37.76  E-value: 6.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674242    63 RAQAECRNTTHLLQRQLTRTQDSLLQAETQANScnltvvtlqesLEKKVSQALEQQARIKELENEVTKLNQELENLRiQK 142
Cdd:pfam04871   1 AKKSELESEASSLKNENTELKAELQELSKQYNS-----------LEQKESQAKELEAEVKKLEEALKKLKAELSEEK-QK 68


                  .
gi 37674242   143 E 143
Cdd:pfam04871  69 E 69
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 75-143 1.72e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 38.08  E-value: 1.72e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 37674242    75 LQRQLTRTQDSLLQAETQANScnltvvtLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRIQKE 143
Cdd:TIGR04523 244 KTTEISNTQTQLNQLKDEQNK-------IKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE 305
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
76-144 4.48e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 36.80  E-value: 4.48e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 37674242  76 QRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRIQKET 144
Cdd:COG4372  72 RSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAE 140
PRK12705 PRK12705
hypothetical protein; Provisional
 33-143 5.84e-03

hypothetical protein; Provisional


Pssm-ID: 237178 [Multi-domain]  Cd Length: 508  Bit Score: 36.23  E-value: 5.84e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37674242   33 ILVVLFGVTLVILTIYFAVTANSVACRDGLRAQAEcrnttHLLQRQLTRTQDSLLQA-ETQANSCNLTVVTLQESLEKKV 111
Cdd:PRK12705  13 LIGLLLGVLVVLLKKRQRLAKEAERILQEAQKEAE-----EKLEAALLEAKELLLRErNQQRQEARREREELQREEERLV 87

                         90       100       110
                 ....*....|....*....|....*....|..
gi 37674242  112 SQALEQQARIKELENEVTKLNQELENLRIQKE 143
Cdd:PRK12705  88 QKEEQLDARAEKLDNLENQLEEREKALSAREL 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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