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Conserved domains on  [gi|40796141|ref|NP_955594|]
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CA [Abelson murine leukemia virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Gag_p12 super family cl03117
Gag polyprotein, inner coat protein p12; The retroviral p12 is a virion structural protein. ...
 1-84 5.39e-25

Gag polyprotein, inner coat protein p12; The retroviral p12 is a virion structural protein. p12 is proline rich. The function carried out by p12 in assembly and replication is unknown. p12 is associated with pathogenicity of the virus.


The actual alignment was detected with superfamily member pfam01141:

Pssm-ID: 279483 [Multi-domain]  Cd Length: 85  Bit Score: 89.04  E-value: 5.39e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40796141    1 PALTPSLGAK-PKPQVLSDSGGPLIDLLTEDPPPYRDPRPPPSDRDGNGGEATPAGEAPDPSPMASRLRGRREPPVADST 79
Cdd:pfam01141  1 PALTPSIGAKpPKPQVLPDSGGPLIDLLTEDPPPYRDAQPPPSARDGNEEEAAPAGEAPDPSPMASRLRGRRDPPAADST 80


                 ....*
gi 40796141   80 TSQAF 84
Cdd:pfam01141 81 TSQAF 85
 
Name Accession Description Interval E-value
Gag_p12 pfam01141
Gag polyprotein, inner coat protein p12; The retroviral p12 is a virion structural protein. ...
 1-84 5.39e-25

Gag polyprotein, inner coat protein p12; The retroviral p12 is a virion structural protein. p12 is proline rich. The function carried out by p12 in assembly and replication is unknown. p12 is associated with pathogenicity of the virus.


Pssm-ID: 279483 [Multi-domain]  Cd Length: 85  Bit Score: 89.04  E-value: 5.39e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40796141    1 PALTPSLGAK-PKPQVLSDSGGPLIDLLTEDPPPYRDPRPPPSDRDGNGGEATPAGEAPDPSPMASRLRGRREPPVADST 79
Cdd:pfam01141  1 PALTPSIGAKpPKPQVLPDSGGPLIDLLTEDPPPYRDAQPPPSARDGNEEEAAPAGEAPDPSPMASRLRGRRDPPAADST 80


                 ....*
gi 40796141   80 TSQAF 84
Cdd:pfam01141 81 TSQAF 85
 
Name Accession Description Interval E-value
Gag_p12 pfam01141
Gag polyprotein, inner coat protein p12; The retroviral p12 is a virion structural protein. ...
 1-84 5.39e-25

Gag polyprotein, inner coat protein p12; The retroviral p12 is a virion structural protein. p12 is proline rich. The function carried out by p12 in assembly and replication is unknown. p12 is associated with pathogenicity of the virus.


Pssm-ID: 279483 [Multi-domain]  Cd Length: 85  Bit Score: 89.04  E-value: 5.39e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40796141    1 PALTPSLGAK-PKPQVLSDSGGPLIDLLTEDPPPYRDPRPPPSDRDGNGGEATPAGEAPDPSPMASRLRGRREPPVADST 79
Cdd:pfam01141  1 PALTPSIGAKpPKPQVLPDSGGPLIDLLTEDPPPYRDAQPPPSARDGNEEEAAPAGEAPDPSPMASRLRGRRDPPAADST 80


                 ....*
gi 40796141   80 TSQAF 84
Cdd:pfam01141 81 TSQAF 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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