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Conserved domains on  [gi|41053736|ref|NP_956556|]
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general transcription factor 3C polypeptide 6 [Danio rerio]

Protein Classification

TFIIIC subunit 6 family protein( domain architecture ID 10564324)

TFIIIC subunit 6 family protein similar to human transcription factor IIIC subunit 6, also called general transcription factor 3C polypeptide 6 (GTF3C6), and Schizosaccharomyces pombe transcription factor tau subunit sfc7, which are components of the TFIIIC complex

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TFIIIC_sub6 pfam10419
TFIIIC subunit triple barrel domain; This is a family of proteins subunits of TFIIIC. TFIIIC ...
 12-93 6.42e-28

TFIIIC subunit triple barrel domain; This is a family of proteins subunits of TFIIIC. TFIIIC in yeast and humans is required for transcription of tRNA and 5 S RNA genes by RNA polymerase III. Yeast members of this family are fused to phosphoglycerate mutase domain.


:

Pssm-ID: 463085  Cd Length: 91  Bit Score: 99.95  E-value: 6.42e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41053736    12 VVAELSGMINSDLISN-RQGTCKIVDIDSEQPMLQVGRYLFTGEYEDAIGTCVIFEEDRSSSNAALKYKCHTMKKLMLQR 90
Cdd:pfam10419   8 VTLDLSGPLYSERLPDeEDATIQILGLDTENPLLQIGGQVYEGEWEETIGTELLFEEDDDANKKSLELLGKSSKRLVLTR 87


                  ...
gi 41053736    91 TFL 93
Cdd:pfam10419  88 VFL 90
 
Name Accession Description Interval E-value
TFIIIC_sub6 pfam10419
TFIIIC subunit triple barrel domain; This is a family of proteins subunits of TFIIIC. TFIIIC ...
 12-93 6.42e-28

TFIIIC subunit triple barrel domain; This is a family of proteins subunits of TFIIIC. TFIIIC in yeast and humans is required for transcription of tRNA and 5 S RNA genes by RNA polymerase III. Yeast members of this family are fused to phosphoglycerate mutase domain.


Pssm-ID: 463085  Cd Length: 91  Bit Score: 99.95  E-value: 6.42e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41053736    12 VVAELSGMINSDLISN-RQGTCKIVDIDSEQPMLQVGRYLFTGEYEDAIGTCVIFEEDRSSSNAALKYKCHTMKKLMLQR 90
Cdd:pfam10419   8 VTLDLSGPLYSERLPDeEDATIQILGLDTENPLLQIGGQVYEGEWEETIGTELLFEEDDDANKKSLELLGKSSKRLVLTR 87


                  ...
gi 41053736    91 TFL 93
Cdd:pfam10419  88 VFL 90
 
Name Accession Description Interval E-value
TFIIIC_sub6 pfam10419
TFIIIC subunit triple barrel domain; This is a family of proteins subunits of TFIIIC. TFIIIC ...
 12-93 6.42e-28

TFIIIC subunit triple barrel domain; This is a family of proteins subunits of TFIIIC. TFIIIC in yeast and humans is required for transcription of tRNA and 5 S RNA genes by RNA polymerase III. Yeast members of this family are fused to phosphoglycerate mutase domain.


Pssm-ID: 463085  Cd Length: 91  Bit Score: 99.95  E-value: 6.42e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41053736    12 VVAELSGMINSDLISN-RQGTCKIVDIDSEQPMLQVGRYLFTGEYEDAIGTCVIFEEDRSSSNAALKYKCHTMKKLMLQR 90
Cdd:pfam10419   8 VTLDLSGPLYSERLPDeEDATIQILGLDTENPLLQIGGQVYEGEWEETIGTELLFEEDDDANKKSLELLGKSSKRLVLTR 87


                  ...
gi 41053736    91 TFL 93
Cdd:pfam10419  88 VFL 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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