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Conserved domains on  [gi|42571513|ref|NP_973847|]
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uridylyltransferase-like protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GlnD super family cl34500
UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, ...
 80-161 2.80e-04

UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones, Signal transduction mechanisms];


The actual alignment was detected with superfamily member COG2844:

Pssm-ID: 442092 [Multi-domain]  Cd Length: 864  Bit Score: 41.28  E-value: 2.80e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571513  80 KVPtPVVIIDQDSDPDATVLEVTFGDRLGALLDTMNALKNLGLNVVKANV--Y----LDSsgkhnkFAITRADsGRKVED 153
Cdd:COG2844 773 PVP-PRVTFDNDASNRYTVLEVSALDRPGLLYDIARVLADLGLNIHSAKIatLgervEDV------FYVTDLD-GQKLTD 844


                ....*...
gi 42571513 154 PELLEAIR 161
Cdd:COG2844 845 PERQEALR 852
 
Name Accession Description Interval E-value
GlnD COG2844
UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, ...
 80-161 2.80e-04

UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones, Signal transduction mechanisms];


Pssm-ID: 442092 [Multi-domain]  Cd Length: 864  Bit Score: 41.28  E-value: 2.80e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571513  80 KVPtPVVIIDQDSDPDATVLEVTFGDRLGALLDTMNALKNLGLNVVKANV--Y----LDSsgkhnkFAITRADsGRKVED 153
Cdd:COG2844 773 PVP-PRVTFDNDASNRYTVLEVSALDRPGLLYDIARVLADLGLNIHSAKIatLgervEDV------FYVTDLD-GQKLTD 844


                ....*...
gi 42571513 154 PELLEAIR 161
Cdd:COG2844 845 PERQEALR 852
ACT_ACR_4 cd04926
C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed ...
 99-161 5.22e-04

C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein); This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.


Pssm-ID: 153198  Cd Length: 72  Bit Score: 37.33  E-value: 5.22e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 42571513  99 LEVTFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNKFAITRAdSGRKVeDPELLEAIR 161
Cdd:cd04926   4 LELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA-NGNPV-DPKTIEAVR 64
PRK03381 PRK03381
PII uridylyl-transferase; Provisional
 81-129 3.48e-03

PII uridylyl-transferase; Provisional


Pssm-ID: 235123 [Multi-domain]  Cd Length: 774  Bit Score: 38.05  E-value: 3.48e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 42571513   81 VPTPVVIIDQDSDPDATVLEVTFGDRLGALLDTMNALKNLGLNVVKANV 129
Cdd:PRK03381 692 AAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARV 740
 
Name Accession Description Interval E-value
GlnD COG2844
UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, ...
 80-161 2.80e-04

UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones, Signal transduction mechanisms];


Pssm-ID: 442092 [Multi-domain]  Cd Length: 864  Bit Score: 41.28  E-value: 2.80e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571513  80 KVPtPVVIIDQDSDPDATVLEVTFGDRLGALLDTMNALKNLGLNVVKANV--Y----LDSsgkhnkFAITRADsGRKVED 153
Cdd:COG2844 773 PVP-PRVTFDNDASNRYTVLEVSALDRPGLLYDIARVLADLGLNIHSAKIatLgervEDV------FYVTDLD-GQKLTD 844


                ....*...
gi 42571513 154 PELLEAIR 161
Cdd:COG2844 845 PERQEALR 852
ACT_ACR_4 cd04926
C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed ...
 99-161 5.22e-04

C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein); This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.


Pssm-ID: 153198  Cd Length: 72  Bit Score: 37.33  E-value: 5.22e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 42571513  99 LEVTFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNKFAITRAdSGRKVeDPELLEAIR 161
Cdd:cd04926   4 LELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA-NGNPV-DPKTIEAVR 64
PRK03381 PRK03381
PII uridylyl-transferase; Provisional
 81-129 3.48e-03

PII uridylyl-transferase; Provisional


Pssm-ID: 235123 [Multi-domain]  Cd Length: 774  Bit Score: 38.05  E-value: 3.48e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 42571513   81 VPTPVVIIDQDSDPDATVLEVTFGDRLGALLDTMNALKNLGLNVVKANV 129
Cdd:PRK03381 692 AAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARV 740
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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