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Conserved domains on  [gi|42572475|ref|NP_974333|]
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DNA-BINDING TRANSCRIPTION FACTOR 2 [Arabidopsis thaliana]

Protein Classification

homeobox domain-containing protein( domain architecture ID 11267636)

homeobox domain-containing protein may be involved in the transcriptional regulation of key eukaryotic developmental processes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SAWADEE pfam16719
SAWADEE domain; The SAWADEE domain, found in plant homeobox proteins, has a pair of tandem ...
 141-270 5.62e-65

SAWADEE domain; The SAWADEE domain, found in plant homeobox proteins, has a pair of tandem tudor-like folds that bind chromatin.


:

Pssm-ID: 465246  Cd Length: 126  Bit Score: 201.74  E-value: 5.62e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572475   141 SYLEFEAKSARDGAWYDVQAFLAHRNLeigdpevQVRFAGFEVEEDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCFQ 220
Cdd:pfam16719   1 SDLELEARSSKDGAWYDVRVFLQHRAL-------RVRFEGFGEEEDEWVNVRKRFRERSIPLEDSECRKVRVGDLVCCFQ 73

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 42572475   221 EGKDQALYFDAIVLDAQRRRHD-VRGCRCRFLVRYSHDQS--EQEIVPLRKIC 270
Cdd:pfam16719  74 EGGDDALYYDAVVVEIQRKRHDiVEGCRCTFVVRWDHGPRagTEEEVGLERIC 126
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 18-75 2.36e-03

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


:

Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 35.69  E-value: 2.36e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 42572475     18 EVTEMEAILLQHNTamPGRHILEALADKFSESPerkgkvvvqfKQIWNWFQNRRYALR 75
Cdd:smart00389  12 QLEELEKEFQKNPY--PSREEREELAKKLGLSE----------RQVKVWFQNRRAKWK 57
 
Name Accession Description Interval E-value
SAWADEE pfam16719
SAWADEE domain; The SAWADEE domain, found in plant homeobox proteins, has a pair of tandem ...
 141-270 5.62e-65

SAWADEE domain; The SAWADEE domain, found in plant homeobox proteins, has a pair of tandem tudor-like folds that bind chromatin.


Pssm-ID: 465246  Cd Length: 126  Bit Score: 201.74  E-value: 5.62e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572475   141 SYLEFEAKSARDGAWYDVQAFLAHRNLeigdpevQVRFAGFEVEEDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCFQ 220
Cdd:pfam16719   1 SDLELEARSSKDGAWYDVRVFLQHRAL-------RVRFEGFGEEEDEWVNVRKRFRERSIPLEDSECRKVRVGDLVCCFQ 73

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 42572475   221 EGKDQALYFDAIVLDAQRRRHD-VRGCRCRFLVRYSHDQS--EQEIVPLRKIC 270
Cdd:pfam16719  74 EGGDDALYYDAVVVEIQRKRHDiVEGCRCTFVVRWDHGPRagTEEEVGLERIC 126
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 18-75 2.36e-03

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 35.69  E-value: 2.36e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 42572475     18 EVTEMEAILLQHNTamPGRHILEALADKFSESPerkgkvvvqfKQIWNWFQNRRYALR 75
Cdd:smart00389  12 QLEELEKEFQKNPY--PSREEREELAKKLGLSE----------RQVKVWFQNRRAKWK 57
 
Name Accession Description Interval E-value
SAWADEE pfam16719
SAWADEE domain; The SAWADEE domain, found in plant homeobox proteins, has a pair of tandem ...
 141-270 5.62e-65

SAWADEE domain; The SAWADEE domain, found in plant homeobox proteins, has a pair of tandem tudor-like folds that bind chromatin.


Pssm-ID: 465246  Cd Length: 126  Bit Score: 201.74  E-value: 5.62e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572475   141 SYLEFEAKSARDGAWYDVQAFLAHRNLeigdpevQVRFAGFEVEEDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCFQ 220
Cdd:pfam16719   1 SDLELEARSSKDGAWYDVRVFLQHRAL-------RVRFEGFGEEEDEWVNVRKRFRERSIPLEDSECRKVRVGDLVCCFQ 73

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 42572475   221 EGKDQALYFDAIVLDAQRRRHD-VRGCRCRFLVRYSHDQS--EQEIVPLRKIC 270
Cdd:pfam16719  74 EGGDDALYYDAVVVEIQRKRHDiVEGCRCTFVVRWDHGPRagTEEEVGLERIC 126
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 18-75 2.36e-03

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 35.69  E-value: 2.36e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 42572475     18 EVTEMEAILLQHNTamPGRHILEALADKFSESPerkgkvvvqfKQIWNWFQNRRYALR 75
Cdd:smart00389  12 QLEELEKEFQKNPY--PSREEREELAKKLGLSE----------RQVKVWFQNRRAKWK 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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