NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|489644972|ref|WP_003549412|]
View 

MULTISPECIES: 50S ribosomal protein L34 [Lactobacillus]

Protein Classification

50S ribosomal protein L34( domain architecture ID 10000747)

50S ribosomal protein L34 is involved in the regulation of the polyamine biosynthetic pathway

Gene Ontology:  GO:0005840|GO:0003735|GO:0006412
PubMed:  17086193

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RpmH COG0230
Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 ...
 3-46 5.08e-12

Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440000  Cd Length: 44  Bit Score: 53.18  E-value: 5.08e-12
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 489644972  3 TKRTYQPKKRHRSRVHGFMKRMSTSNGRKVLARRRAKGRKVLSA 46
Cdd:COG0230   1 MKRTYQPSKRKRKRTHGFRARMSTKNGRKVLKRRRAKGRKRLTV 44
 
Name Accession Description Interval E-value
RpmH COG0230
Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 ...
 3-46 5.08e-12

Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440000  Cd Length: 44  Bit Score: 53.18  E-value: 5.08e-12
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 489644972  3 TKRTYQPKKRHRSRVHGFMKRMSTSNGRKVLARRRAKGRKVLSA 46
Cdd:COG0230   1 MKRTYQPSKRKRKRTHGFRARMSTKNGRKVLKRRRAKGRKRLTV 44
Ribosomal_L34 pfam00468
Ribosomal protein L34;
4-45 7.03e-11

Ribosomal protein L34;


Pssm-ID: 425699  Cd Length: 42  Bit Score: 50.08  E-value: 7.03e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 489644972   4 KRTYQPKKRHRSRVHGFMKRMSTSNGRKVLARRRAKGRKVLS 45
Cdd:pfam00468  1 KRTYQPSNRKRKRKHGFRARMRTKNGRKVLKRRRAKGRKRLT 42
rpmH_bact TIGR01030
ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its ...
 3-46 2.76e-07

ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its equivalents in organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130102  Cd Length: 44  Bit Score: 41.35  E-value: 2.76e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 489644972   3 TKRTYQPKKRHRSRVHGFMKRMSTSNGRKVLARRRAKGRKVLSA 46
Cdd:TIGR01030  1 MKRTYQPSNLKRKRTHGFRARMATKNGRKVLRRRRAKGRHKLTV 44
rpl34 CHL00115
ribosomal protein L34; Reviewed
 3-44 4.52e-03

ribosomal protein L34; Reviewed


Pssm-ID: 177039  Cd Length: 46  Bit Score: 30.51  E-value: 4.52e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 489644972  3 TKRTYQPKKRHRSRVHGFMKRMSTSNGRKVLARRRAKGRKVL 44
Cdd:CHL00115  2 TKRTLSGTKRKKVRKSGFRARMATAAGRKILNARRRKGRKKL 43
 
Name Accession Description Interval E-value
RpmH COG0230
Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 ...
 3-46 5.08e-12

Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440000  Cd Length: 44  Bit Score: 53.18  E-value: 5.08e-12
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 489644972  3 TKRTYQPKKRHRSRVHGFMKRMSTSNGRKVLARRRAKGRKVLSA 46
Cdd:COG0230   1 MKRTYQPSKRKRKRTHGFRARMSTKNGRKVLKRRRAKGRKRLTV 44
Ribosomal_L34 pfam00468
Ribosomal protein L34;
4-45 7.03e-11

Ribosomal protein L34;


Pssm-ID: 425699  Cd Length: 42  Bit Score: 50.08  E-value: 7.03e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 489644972   4 KRTYQPKKRHRSRVHGFMKRMSTSNGRKVLARRRAKGRKVLS 45
Cdd:pfam00468  1 KRTYQPSNRKRKRKHGFRARMRTKNGRKVLKRRRAKGRKRLT 42
rpmH_bact TIGR01030
ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its ...
 3-46 2.76e-07

ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its equivalents in organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130102  Cd Length: 44  Bit Score: 41.35  E-value: 2.76e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 489644972   3 TKRTYQPKKRHRSRVHGFMKRMSTSNGRKVLARRRAKGRKVLSA 46
Cdd:TIGR01030  1 MKRTYQPSNLKRKRTHGFRARMATKNGRKVLRRRRAKGRHKLTV 44
rpl34 CHL00115
ribosomal protein L34; Reviewed
 3-44 4.52e-03

ribosomal protein L34; Reviewed


Pssm-ID: 177039  Cd Length: 46  Bit Score: 30.51  E-value: 4.52e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 489644972  3 TKRTYQPKKRHRSRVHGFMKRMSTSNGRKVLARRRAKGRKVL 44
Cdd:CHL00115  2 TKRTLSGTKRKKVRKSGFRARMATAAGRKILNARRRKGRKKL 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH