Tripartite ATP-independent periplasmic (TRAP) transporter permease is the membrane component of a TRAP transporter, a substrate-binding protein (SBP)-dependent secondary transporter with similarity to C4-dicarboxylate TRAP transporter permease protein DctM
Domain of unknown function (DUF3394); This domain is functionally uncharacterized. This domain ...
690-875
1.91e-69
Domain of unknown function (DUF3394); This domain is functionally uncharacterized. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with pfam06808.
:
Pssm-ID: 432151 Cd Length: 179 Bit Score: 227.43 E-value: 1.91e-69
TRAP transporter, 4TM/12TM fusion protein; In some species, the 12-transmembrane spanning and ...
30-731
0e+00
TRAP transporter, 4TM/12TM fusion protein; In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273983 [Multi-domain] Cd Length: 614 Bit Score: 577.70 E-value: 0e+00
Domain of unknown function (DUF3394); This domain is functionally uncharacterized. This domain ...
690-875
1.91e-69
Domain of unknown function (DUF3394); This domain is functionally uncharacterized. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with pfam06808.
Pssm-ID: 432151 Cd Length: 179 Bit Score: 227.43 E-value: 1.91e-69
Tripartite ATP-independent periplasmic transporter, DctM component; This family contains a ...
145-681
5.20e-61
Tripartite ATP-independent periplasmic transporter, DctM component; This family contains a diverse range of predicted transporter proteins. Including the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers. Note that many family members are hypothetical proteins.
Pssm-ID: 284275 [Multi-domain] Cd Length: 413 Bit Score: 212.89 E-value: 5.20e-61
TRAP transporter, 4TM/12TM fusion protein; In some species, the 12-transmembrane spanning and ...
30-731
0e+00
TRAP transporter, 4TM/12TM fusion protein; In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273983 [Multi-domain] Cd Length: 614 Bit Score: 577.70 E-value: 0e+00
Domain of unknown function (DUF3394); This domain is functionally uncharacterized. This domain ...
690-875
1.91e-69
Domain of unknown function (DUF3394); This domain is functionally uncharacterized. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with pfam06808.
Pssm-ID: 432151 Cd Length: 179 Bit Score: 227.43 E-value: 1.91e-69
Tripartite ATP-independent periplasmic transporter, DctM component; This family contains a ...
145-681
5.20e-61
Tripartite ATP-independent periplasmic transporter, DctM component; This family contains a diverse range of predicted transporter proteins. Including the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers. Note that many family members are hypothetical proteins.
Pssm-ID: 284275 [Multi-domain] Cd Length: 413 Bit Score: 212.89 E-value: 5.20e-61
TRAP transporter, DctM subunit; The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family (TC 2.A.56)- DctM subunit TRAP-T family permeases generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterized. This system is the DctPQM system of Rhodobacter capsulatus (Forward et al., 1997). DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterized. DctQ is an integral cytoplasmic membrane protein with 4 putative transmembrane a-helical spanners (TMSs). DctM is a second integral cytoplasmic membrane protein with 12 putative TMSs. These proteins have been shown to be both necessary and sufficient for the proton motive force-dependent uptake of dicarboxylates into R. capsulatus. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 129868 Cd Length: 405 Bit Score: 79.25 E-value: 1.91e-15
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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