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Conserved domains on  [gi|493295636|ref|WP_006253298|]
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hypothetical protein [Mannheimia haemolytica]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TraU super family cl06067
TraU protein; This family consists of several bacterial TraU proteins. TraU appears to be more ...
 35-85 3.52e-12

TraU protein; This family consists of several bacterial TraU proteins. TraU appears to be more essential to conjugal DNA transfer than to assembly of pilus filaments.


The actual alignment was detected with superfamily member TIGR03756:

Pssm-ID: 446884  Cd Length: 297  Bit Score: 60.08  E-value: 3.52e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 493295636   35 TSESYPKVFPHSGDWATHSDSfsnteNYSWALWRPYSCCKKQGQVFLGHVD 85
Cdd:TIGR03756 252 KLSSSCAVFPDSGPDKQAANG-----NYAWALWRPYSCCQRRGQTFLGSTD 297
 
Name Accession Description Interval E-value
conj_TIGR03756 TIGR03756
integrating conjugative element protein, PFL_4710 family; Members of this protein family are ...
 35-85 3.52e-12

integrating conjugative element protein, PFL_4710 family; Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown. [Mobile and extrachromosomal element functions, Plasmid functions]


Pssm-ID: 274769  Cd Length: 297  Bit Score: 60.08  E-value: 3.52e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 493295636   35 TSESYPKVFPHSGDWATHSDSfsnteNYSWALWRPYSCCKKQGQVFLGHVD 85
Cdd:TIGR03756 252 KLSSSCAVFPDSGPDKQAANG-----NYAWALWRPYSCCQRRGQTFLGSTD 297
TraU pfam06834
TraU protein; This family consists of several bacterial TraU proteins. TraU appears to be more ...
 42-73 2.62e-04

TraU protein; This family consists of several bacterial TraU proteins. TraU appears to be more essential to conjugal DNA transfer than to assembly of pilus filaments.


Pssm-ID: 429143  Cd Length: 306  Bit Score: 37.75  E-value: 2.62e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 493295636   42 VFPHSGDWATHSDSFSNT---ENYSWALWRPYSCC 73
Cdd:pfam06834 270 PFGRSTLLWGAGKNPPGTgadGDYAYLLWRKRNCC 304
 
Name Accession Description Interval E-value
conj_TIGR03756 TIGR03756
integrating conjugative element protein, PFL_4710 family; Members of this protein family are ...
 35-85 3.52e-12

integrating conjugative element protein, PFL_4710 family; Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown. [Mobile and extrachromosomal element functions, Plasmid functions]


Pssm-ID: 274769  Cd Length: 297  Bit Score: 60.08  E-value: 3.52e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 493295636   35 TSESYPKVFPHSGDWATHSDSfsnteNYSWALWRPYSCCKKQGQVFLGHVD 85
Cdd:TIGR03756 252 KLSSSCAVFPDSGPDKQAANG-----NYAWALWRPYSCCQRRGQTFLGSTD 297
TraU pfam06834
TraU protein; This family consists of several bacterial TraU proteins. TraU appears to be more ...
 42-73 2.62e-04

TraU protein; This family consists of several bacterial TraU proteins. TraU appears to be more essential to conjugal DNA transfer than to assembly of pilus filaments.


Pssm-ID: 429143  Cd Length: 306  Bit Score: 37.75  E-value: 2.62e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 493295636   42 VFPHSGDWATHSDSFSNT---ENYSWALWRPYSCC 73
Cdd:pfam06834 270 PFGRSTLLWGAGKNPPGTgadGDYAYLLWRKRNCC 304
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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