methyltransferase, putative [Plasmodium falciparum 3D7]
class I SAM-dependent rRNA methyltransferase( domain architecture ID 11437764)
class I SAM-dependent rRNA methyltransferase catalyzes the methylation of one or more specific ribosomal RNA residues using S-adenosyl-L-methionine (SAM or AdoMet) as the methyl donor
List of domain hits
Name | Accession | Description | Interval | E-value | |||||||
RlmK | COG1092 | 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure ... |
107-552 | 9.37e-85 | |||||||
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure and biogenesis]; 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI is part of the Pathway/BioSystem: 23S rRNA modification : Pssm-ID: 440709 [Multi-domain] Cd Length: 392 Bit Score: 268.97 E-value: 9.37e-85
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Name | Accession | Description | Interval | E-value | |||||||
RlmK | COG1092 | 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure ... |
107-552 | 9.37e-85 | |||||||
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure and biogenesis]; 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI is part of the Pathway/BioSystem: 23S rRNA modification Pssm-ID: 440709 [Multi-domain] Cd Length: 392 Bit Score: 268.97 E-value: 9.37e-85
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PRK15128 | PRK15128 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI; |
107-549 | 7.39e-32 | |||||||
23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI; Pssm-ID: 185082 [Multi-domain] Cd Length: 396 Bit Score: 127.26 E-value: 7.39e-32
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RlmI_M_like | cd11572 | Middle domain of the SAM-dependent methyltransferase RlmI and related proteins; This middle or ... |
246-321 | 1.29e-24 | |||||||
Middle domain of the SAM-dependent methyltransferase RlmI and related proteins; This middle or central domain is typically found between an N-terminal PUA domain and a C-terminal SAM-dependent methyltransferase domain, such as in the Escherichia coli ribosomal RNA large subunit methyltransferase RlmI (YccW). It may be involved in binding to the RNA substrate. Pssm-ID: 211413 [Multi-domain] Cd Length: 99 Bit Score: 97.92 E-value: 1.29e-24
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PUA_3 | pfam17785 | PUA-like domain; This PUA-like domain is found at the N-terminus of SAM-dependent ... |
106-163 | 1.53e-08 | |||||||
PUA-like domain; This PUA-like domain is found at the N-terminus of SAM-dependent methyltransferases. Pssm-ID: 436043 [Multi-domain] Cd Length: 64 Bit Score: 51.32 E-value: 1.53e-08
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Name | Accession | Description | Interval | E-value | |||||||
RlmK | COG1092 | 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure ... |
107-552 | 9.37e-85 | |||||||
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure and biogenesis]; 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI is part of the Pathway/BioSystem: 23S rRNA modification Pssm-ID: 440709 [Multi-domain] Cd Length: 392 Bit Score: 268.97 E-value: 9.37e-85
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PRK15128 | PRK15128 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI; |
107-549 | 7.39e-32 | |||||||
23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI; Pssm-ID: 185082 [Multi-domain] Cd Length: 396 Bit Score: 127.26 E-value: 7.39e-32
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RlmI_M_like | cd11572 | Middle domain of the SAM-dependent methyltransferase RlmI and related proteins; This middle or ... |
246-321 | 1.29e-24 | |||||||
Middle domain of the SAM-dependent methyltransferase RlmI and related proteins; This middle or central domain is typically found between an N-terminal PUA domain and a C-terminal SAM-dependent methyltransferase domain, such as in the Escherichia coli ribosomal RNA large subunit methyltransferase RlmI (YccW). It may be involved in binding to the RNA substrate. Pssm-ID: 211413 [Multi-domain] Cd Length: 99 Bit Score: 97.92 E-value: 1.29e-24
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PUA_3 | pfam17785 | PUA-like domain; This PUA-like domain is found at the N-terminus of SAM-dependent ... |
106-163 | 1.53e-08 | |||||||
PUA-like domain; This PUA-like domain is found at the N-terminus of SAM-dependent methyltransferases. Pssm-ID: 436043 [Multi-domain] Cd Length: 64 Bit Score: 51.32 E-value: 1.53e-08
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Trm5 | COG2520 | tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]; tRNA G37 ... |
278-417 | 1.15e-06 | |||||||
tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]; tRNA G37 N-methylase Trm5 is part of the Pathway/BioSystem: tRNA modification Pssm-ID: 442010 [Multi-domain] Cd Length: 333 Bit Score: 50.63 E-value: 1.15e-06
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Met_10 | pfam02475 | Met-10+ like-protein; The methionine-10 mutant allele of N. crassa codes for a protein of ... |
282-418 | 2.89e-06 | |||||||
Met-10+ like-protein; The methionine-10 mutant allele of N. crassa codes for a protein of unknown function, Swiss:O27901. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilization. Pssm-ID: 396850 [Multi-domain] Cd Length: 198 Bit Score: 48.12 E-value: 2.89e-06
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PUA_RlmI | cd21153 | PUA RNA-binding domain of the SAM-dependent methyltransferase RlmI and related proteins; The ... |
106-163 | 9.47e-06 | |||||||
PUA RNA-binding domain of the SAM-dependent methyltransferase RlmI and related proteins; The RNA-binding PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was detected in a number of proteins involved in RNA metabolism. Members of this subfamily contain PUA domains that co-occur N-terminal to SAM-dependent methyltransferase domains and include Escherichia coli RlmI (rRNA large subunit methyltransferase gene I, also called YccW) and Thermus thermophilus methyltransferase RlmO, which are 5-methylcytosine methyltransferases (m5C MTases) that play a role in modifying 23S rRNA. This subfamily also includes Pyrococcus horikoshii PH1915 that may play a role as a 5-methyluridine MTase, and/or perform similar roles. Pssm-ID: 409295 [Multi-domain] Cd Length: 70 Bit Score: 43.73 E-value: 9.47e-06
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Methyltrans_SAM | pfam10672 | S-adenosylmethionine-dependent methyltransferase; Members of this family are ... |
317-507 | 1.32e-05 | |||||||
S-adenosylmethionine-dependent methyltransferase; Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyze the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalyzed by the S-adenosylmethionine-dependent methyltransferases. Pssm-ID: 287624 [Multi-domain] Cd Length: 286 Bit Score: 47.18 E-value: 1.32e-05
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Cons_hypoth95 | pfam03602 | Conserved hypothetical protein 95; |
361-508 | 1.69e-04 | |||||||
Conserved hypothetical protein 95; Pssm-ID: 427391 [Multi-domain] Cd Length: 179 Bit Score: 42.61 E-value: 1.69e-04
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RsmD | COG0742 | 16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
368-508 | 2.09e-04 | |||||||
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA G966 N2-methylase RsmD is part of the Pathway/BioSystem: 16S rRNA modification Pssm-ID: 440505 [Multi-domain] Cd Length: 183 Bit Score: 42.38 E-value: 2.09e-04
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Blast search parameters | ||||
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