PREDICTED: frataxin homolog, mitochondrial [Megachile rotundata]
frataxin( domain architecture ID 10022430)
frataxin is a mitochondrial protein that promotes the biosynthesis of heme and assembly and repair of iron-sulfur clusters by delivering Fe(2+) to proteins involved in these pathways
List of domain hits
Name | Accession | Description | Interval | E-value | |||
mito_frataxin | TIGR03422 | frataxin; Frataxin is a mitochondrial protein, mutation of which leads to the disease ... |
85-182 | 3.78e-54 | |||
frataxin; Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately. : Pssm-ID: 132463 Cd Length: 97 Bit Score: 167.80 E-value: 3.78e-54
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Name | Accession | Description | Interval | E-value | |||
mito_frataxin | TIGR03422 | frataxin; Frataxin is a mitochondrial protein, mutation of which leads to the disease ... |
85-182 | 3.78e-54 | |||
frataxin; Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately. Pssm-ID: 132463 Cd Length: 97 Bit Score: 167.80 E-value: 3.78e-54
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Frataxin_Cyay | pfam01491 | Frataxin-like domain; This family contains proteins that have a domain related to the globular ... |
81-185 | 1.40e-49 | |||
Frataxin-like domain; This family contains proteins that have a domain related to the globular C-terminus of Frataxin the protein that is mutated in Friedreich's ataxia. This domain is found in a family of bacterial proteins. The function of this domain is currently unknown. It has been suggested that this family is involved in iron transport. Pssm-ID: 460230 Cd Length: 106 Bit Score: 156.53 E-value: 1.40e-49
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Frataxin | cd00503 | Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), ... |
86-184 | 2.06e-40 | |||
Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet. Pssm-ID: 238280 Cd Length: 105 Bit Score: 133.16 E-value: 2.06e-40
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CyaY | COG1965 | Fe-S cluster assembly protein CyaY, frataxin homolog [Inorganic ion transport and metabolism]; ... |
85-181 | 9.41e-21 | |||
Fe-S cluster assembly protein CyaY, frataxin homolog [Inorganic ion transport and metabolism]; Fe-S cluster assembly protein CyaY, frataxin homolog is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis Pssm-ID: 441568 Cd Length: 106 Bit Score: 82.92 E-value: 9.41e-21
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cyaY | PRK00446 | frataxin-like protein; Provisional |
81-181 | 1.05e-16 | |||
frataxin-like protein; Provisional Pssm-ID: 234765 Cd Length: 105 Bit Score: 72.22 E-value: 1.05e-16
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Name | Accession | Description | Interval | E-value | |||
mito_frataxin | TIGR03422 | frataxin; Frataxin is a mitochondrial protein, mutation of which leads to the disease ... |
85-182 | 3.78e-54 | |||
frataxin; Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately. Pssm-ID: 132463 Cd Length: 97 Bit Score: 167.80 E-value: 3.78e-54
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Frataxin_Cyay | pfam01491 | Frataxin-like domain; This family contains proteins that have a domain related to the globular ... |
81-185 | 1.40e-49 | |||
Frataxin-like domain; This family contains proteins that have a domain related to the globular C-terminus of Frataxin the protein that is mutated in Friedreich's ataxia. This domain is found in a family of bacterial proteins. The function of this domain is currently unknown. It has been suggested that this family is involved in iron transport. Pssm-ID: 460230 Cd Length: 106 Bit Score: 156.53 E-value: 1.40e-49
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Frataxin | cd00503 | Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), ... |
86-184 | 2.06e-40 | |||
Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet. Pssm-ID: 238280 Cd Length: 105 Bit Score: 133.16 E-value: 2.06e-40
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FeS_CyaY | TIGR03421 | iron donor protein CyaY; Members of this protein family are the iron-sulfur cluster (FeS) ... |
85-181 | 2.57e-27 | |||
iron donor protein CyaY; Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other] Pssm-ID: 274572 Cd Length: 102 Bit Score: 99.59 E-value: 2.57e-27
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CyaY | COG1965 | Fe-S cluster assembly protein CyaY, frataxin homolog [Inorganic ion transport and metabolism]; ... |
85-181 | 9.41e-21 | |||
Fe-S cluster assembly protein CyaY, frataxin homolog [Inorganic ion transport and metabolism]; Fe-S cluster assembly protein CyaY, frataxin homolog is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis Pssm-ID: 441568 Cd Length: 106 Bit Score: 82.92 E-value: 9.41e-21
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cyaY | PRK00446 | frataxin-like protein; Provisional |
81-181 | 1.05e-16 | |||
frataxin-like protein; Provisional Pssm-ID: 234765 Cd Length: 105 Bit Score: 72.22 E-value: 1.05e-16
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cyaY | PRK01379 | iron donor protein CyaY; |
85-164 | 1.32e-08 | |||
iron donor protein CyaY; Pssm-ID: 134546 Cd Length: 103 Bit Score: 50.70 E-value: 1.32e-08
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Blast search parameters | ||||
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