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Conserved domains on  [gi|528471257|ref|XP_005163529|]
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kinesin-like protein KIF2C isoform X1 [Danio rerio]

Protein Classification

kinesin family protein( domain architecture ID 10102678)

kinesin family protein is a microtubule-dependent molecular motor that plays an important role in intracellular transport and in cell division and has ATPase-containing motor domain; such as KIF2, a plus end-directed microtubule-dependent motor expressed in neurons that has been associated with axonal transport, neuron development, and lysosomal translocation (splice variants)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
267-595 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


:

Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 555.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 267 RICVCVRKRPLNKKELAKKEIDVVTIPGNGVLLLHEPKQKVDLTKYLENQTFHFDYSFDEDATNDLVYRFTAKPLVKTIF 346
Cdd:cd01367    1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 347 EGGMATCFAYGQTGSGKTHTMGGDFSGksQNSSKGIYALAAQDVFTLLRQKRYvDMDLCPYVTFFEIYNGKVFDLLNKKT 426
Cdd:cd01367   81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPY-KDNLGVTVSFFEIYGGKVFDLLNRKK 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 427 KLRVLEDEKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQVILRRRNF--LYGKFSLVDLAG 504
Cdd:cd01367  158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGTnkLHGKLSFVDLAG 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 505 NERGTDVSSNDRHTIVETAEINRSLLALKECIRSLGQNSEHIPFRMSKLTQVLRDSFIGENSRTCMIAMISPGMSSCEYT 584
Cdd:cd01367  238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                        330
                 ....*....|.
gi 528471257 585 LNTLRYANRVK 595
Cdd:cd01367  318 LNTLRYADRVK 328
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
267-595 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 555.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 267 RICVCVRKRPLNKKELAKKEIDVVTIPGNGVLLLHEPKQKVDLTKYLENQTFHFDYSFDEDATNDLVYRFTAKPLVKTIF 346
Cdd:cd01367    1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 347 EGGMATCFAYGQTGSGKTHTMGGDFSGksQNSSKGIYALAAQDVFTLLRQKRYvDMDLCPYVTFFEIYNGKVFDLLNKKT 426
Cdd:cd01367   81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPY-KDNLGVTVSFFEIYGGKVFDLLNRKK 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 427 KLRVLEDEKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQVILRRRNF--LYGKFSLVDLAG 504
Cdd:cd01367  158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGTnkLHGKLSFVDLAG 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 505 NERGTDVSSNDRHTIVETAEINRSLLALKECIRSLGQNSEHIPFRMSKLTQVLRDSFIGENSRTCMIAMISPGMSSCEYT 584
Cdd:cd01367  238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                        330
                 ....*....|.
gi 528471257 585 LNTLRYANRVK 595
Cdd:cd01367  318 LNTLRYADRVK 328
Kinesin pfam00225
Kinesin motor domain;
273-596 6.73e-128

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 381.92  E-value: 6.73e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257  273 RKRPLNKKELAKKEIDVVTIPGNGvlllHEPKQKVDLTKYLENQTFHFDYSFDEDATNDLVYRFTAKPLVKTIFEGGMAT 352
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVESVD----SETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVT 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257  353 CFAYGQTGSGKTHTMGGDfsgksqNSSKGIYALAAQDVFTLLRQKRYVDMDLCpYVTFFEIYNGKVFDLL----NKKTKL 428
Cdd:pfam00225  77 IFAYGQTGSGKTYTMEGS------DEQPGIIPRALEDLFDRIQKTKERSEFSV-KVSYLEIYNEKIRDLLspsnKNKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257  429 RVLEDEKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQVILRRRN--------FLYGKFSLV 500
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNrstggeesVKTGKLNLV 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257  501 DLAGNERGTDVSSNDRHTIVETAEINRSLLALKECIRSLGQN-SEHIPFRMSKLTQVLRDSFIGeNSRTCMIAMISPGMS 579
Cdd:pfam00225 230 DLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKkSKHIPYRDSKLTRLLQDSLGG-NSKTLMIANISPSSS 308
                         330
                  ....*....|....*..
gi 528471257  580 SCEYTLNTLRYANRVKE 596
Cdd:pfam00225 309 NYEETLSTLRFASRAKN 325
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
267-598 6.62e-121

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 364.20  E-value: 6.62e-121
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257   267 RICVCVRKRPLNKKELAKKEIDVVTIPGNGV--LLLHEPKqkvdltKYLENQTFHFDYSFDEDATNDLVYRFTAKPLVKT 344
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVGktLTVRSPK------NRQGEKKFTFDKVFDATASQEDVFEETAAPLVDS 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257   345 IFEGGMATCFAYGQTGSGKTHTMGGDFsgksqnSSKGIYALAAQDVFTLLRQKRYvDMDLCPYVTFFEIYNGKVFDLLNK 424
Cdd:smart00129  75 VLEGYNATIFAYGQTGSGKTYTMIGTP------DSPGIIPRALKDLFEKIDKREE-GWQFSVKVSYLEIYNEKIRDLLNP 147
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257   425 -KTKLRVLEDEKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQVILRRRNF-------LYGK 496
Cdd:smart00129 148 sSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKnsssgsgKASK 227
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257   497 FSLVDLAGNERGTDvSSNDRHTIVETAEINRSLLALKECIRSLGQN--SEHIPFRMSKLTQVLRDSFiGENSRTCMIAMI 574
Cdd:smart00129 228 LNLVDLAGSERAKK-TGAEGDRLKEAGNINKSLSALGNVINALAQHskSRHIPYRDSKLTRLLQDSL-GGNSKTLMIANV 305
                          330       340
                   ....*....|....*....|....
gi 528471257   575 SPGMSSCEYTLNTLRYANRVKELN 598
Cdd:smart00129 306 SPSSSNLEETLSTLRFASRAKEIK 329
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
270-698 1.58e-59

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 210.37  E-value: 1.58e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 270 VCVRKRPLNKKELAKKEIDVVTIPG-NGVLLLHEPKQK-VDLTKYLENqTFHFDYSFDEDATNDLVYRFTAKPLVKTIFE 347
Cdd:COG5059    9 LKSRLSSRNEKSVSDIKSTIRIIPGeLGERLINTSKKShVSLEKSKEG-TYAFDKVFGPSATQEDVYEETIKPLIDSLLL 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 348 GGMATCFAYGQTGSGKTHTMGGDfsgksqNSSKGIYALAAQDVFTLLRqKRYVDMDLCPYVTFFEIYNGKVFDLL-NKKT 426
Cdd:COG5059   88 GYNCTVFAYGQTGSGKTYTMSGT------EEEPGIIPLSLKELFSKLE-DLSMTKDFAVSISYLEIYNEKIYDLLsPNEE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 427 KLRVLEDEKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQVILRRRNFLYG-----KFSLVD 501
Cdd:COG5059  161 SLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGtsetsKLSLVD 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 502 LAGNERGTD-VSSNDRhtIVETAEINRSLLALKECIRSLG--QNSEHIPFRMSKLTQVLRDSfIGENSRTCMIAMISPGM 578
Cdd:COG5059  241 LAGSERAARtGNRGTR--LKEGASINKSLLTLGNVINALGdkKKSGHIPYRESKLTRLLQDS-LGGNCNTRVICTISPSS 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 579 SSCEYTLNTLRYANRVKELngisKGDAVENGSKLELSEEGNSSEEETVLPEFEAISRVSEMEERFYEELKGCSEVAKSME 658
Cdd:COG5059  318 NSFEETINTLKFASRAKSI----KNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQSQLSQSSLSGIFAYMQSLK 393
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|.
gi 528471257 659 LPSFDivaNLSNIDSFMR-KLQESYQALRSAIEAEQRVRMS 698
Cdd:COG5059  394 KETET---LKSRIDLIMKsIISGTFERKKLLKEEGWKYKST 431
PLN03188 PLN03188
kinesin-12 family protein; Provisional
270-608 5.02e-39

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 155.48  E-value: 5.02e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257  270 VCVRKRPLNKKElaKKEIDVVTIPGNGVLLLhepkqkvdltkyleNQTFHFDYSFDEDATNDLVYRFTAKPLVKTIFEGG 349
Cdd:PLN03188  102 VIVRMKPLNKGE--EGEMIVQKMSNDSLTIN--------------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGF 165
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257  350 MATCFAYGQTGSGKTHTMGGDFSGKSQNSSKGIYALAAQDVFTLL------RQKRYVDMDL---CpYVTFFEIYNGKVFD 420
Cdd:PLN03188  166 NSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLfarineEQIKHADRQLkyqC-RCSFLEIYNEQITD 244
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257  421 LLNKKTK-LRVLEDEKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQVILRRR--------- 490
Cdd:PLN03188  245 LLDPSQKnLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRcksvadgls 324
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257  491 NFLYGKFSLVDLAGNERGTDV-SSNDRhtIVETAEINRSLLALKECIRSLGQNSE-----HIPFRMSKLTQVLRDSfIGE 564
Cdd:PLN03188  325 SFKTSRINLVDLAGSERQKLTgAAGDR--LKEAGNINRSLSQLGNLINILAEISQtgkqrHIPYRDSRLTFLLQES-LGG 401
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 528471257  565 NSRTCMIAMISPGMSSCEYTLNTLRYANRVKELngisKGDAVEN 608
Cdd:PLN03188  402 NAKLAMVCAISPSQSCKSETFSTLRFAQRAKAI----KNKAVVN 441
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
267-595 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 555.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 267 RICVCVRKRPLNKKELAKKEIDVVTIPGNGVLLLHEPKQKVDLTKYLENQTFHFDYSFDEDATNDLVYRFTAKPLVKTIF 346
Cdd:cd01367    1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 347 EGGMATCFAYGQTGSGKTHTMGGDFSGksQNSSKGIYALAAQDVFTLLRQKRYvDMDLCPYVTFFEIYNGKVFDLLNKKT 426
Cdd:cd01367   81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPY-KDNLGVTVSFFEIYGGKVFDLLNRKK 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 427 KLRVLEDEKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQVILRRRNF--LYGKFSLVDLAG 504
Cdd:cd01367  158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGTnkLHGKLSFVDLAG 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 505 NERGTDVSSNDRHTIVETAEINRSLLALKECIRSLGQNSEHIPFRMSKLTQVLRDSFIGENSRTCMIAMISPGMSSCEYT 584
Cdd:cd01367  238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                        330
                 ....*....|.
gi 528471257 585 LNTLRYANRVK 595
Cdd:cd01367  318 LNTLRYADRVK 328
Kinesin pfam00225
Kinesin motor domain;
273-596 6.73e-128

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 381.92  E-value: 6.73e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257  273 RKRPLNKKELAKKEIDVVTIPGNGvlllHEPKQKVDLTKYLENQTFHFDYSFDEDATNDLVYRFTAKPLVKTIFEGGMAT 352
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVESVD----SETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVT 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257  353 CFAYGQTGSGKTHTMGGDfsgksqNSSKGIYALAAQDVFTLLRQKRYVDMDLCpYVTFFEIYNGKVFDLL----NKKTKL 428
Cdd:pfam00225  77 IFAYGQTGSGKTYTMEGS------DEQPGIIPRALEDLFDRIQKTKERSEFSV-KVSYLEIYNEKIRDLLspsnKNKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257  429 RVLEDEKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQVILRRRN--------FLYGKFSLV 500
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNrstggeesVKTGKLNLV 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257  501 DLAGNERGTDVSSNDRHTIVETAEINRSLLALKECIRSLGQN-SEHIPFRMSKLTQVLRDSFIGeNSRTCMIAMISPGMS 579
Cdd:pfam00225 230 DLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKkSKHIPYRDSKLTRLLQDSLGG-NSKTLMIANISPSSS 308
                         330
                  ....*....|....*..
gi 528471257  580 SCEYTLNTLRYANRVKE 596
Cdd:pfam00225 309 NYEETLSTLRFASRAKN 325
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
267-595 1.09e-123

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 371.20  E-value: 1.09e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 267 RICVCVRKRPLNKKElAKKEIDVVTIPGNGVLLLHEPKQKVdltkyLENQTFHFDYSFDEDATNDLVYRFTAKPLVKTIF 346
Cdd:cd00106    1 NVRVAVRVRPLNGRE-ARSAKSVISVDGGKSVVLDPPKNRV-----APPKTFAFDAVFDSTSTQEEVYEGTAKPLVDSAL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 347 EGGMATCFAYGQTGSGKTHTMGGDFSgksqnSSKGIYALAAQDVFTLLRQKRYVDMDLCPYVTFFEIYNGKVFDLLN--K 424
Cdd:cd00106   75 EGYNGTIFAYGQTGSGKTYTMLGPDP-----EQRGIIPRALEDIFERIDKRKETKSSFSVSASYLEIYNEKIYDLLSpvP 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 425 KTKLRVLEDEKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQVILRRRN-------FLYGKF 497
Cdd:cd00106  150 KKPLSLREDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRNreksgesVTSSKL 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 498 SLVDLAGNERGTDvSSNDRHTIVETAEINRSLLALKECIRSLGQNSE-HIPFRMSKLTQVLRDSFIGeNSRTCMIAMISP 576
Cdd:cd00106  230 NLVDLAGSERAKK-TGAEGDRLKEGGNINKSLSALGKVISALADGQNkHIPYRDSKLTRLLQDSLGG-NSKTIMIACISP 307
                        330
                 ....*....|....*....
gi 528471257 577 GMSSCEYTLNTLRYANRVK 595
Cdd:cd00106  308 SSENFEETLSTLRFASRAK 326
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
267-598 6.62e-121

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 364.20  E-value: 6.62e-121
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257   267 RICVCVRKRPLNKKELAKKEIDVVTIPGNGV--LLLHEPKqkvdltKYLENQTFHFDYSFDEDATNDLVYRFTAKPLVKT 344
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVGktLTVRSPK------NRQGEKKFTFDKVFDATASQEDVFEETAAPLVDS 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257   345 IFEGGMATCFAYGQTGSGKTHTMGGDFsgksqnSSKGIYALAAQDVFTLLRQKRYvDMDLCPYVTFFEIYNGKVFDLLNK 424
Cdd:smart00129  75 VLEGYNATIFAYGQTGSGKTYTMIGTP------DSPGIIPRALKDLFEKIDKREE-GWQFSVKVSYLEIYNEKIRDLLNP 147
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257   425 -KTKLRVLEDEKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQVILRRRNF-------LYGK 496
Cdd:smart00129 148 sSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKnsssgsgKASK 227
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257   497 FSLVDLAGNERGTDvSSNDRHTIVETAEINRSLLALKECIRSLGQN--SEHIPFRMSKLTQVLRDSFiGENSRTCMIAMI 574
Cdd:smart00129 228 LNLVDLAGSERAKK-TGAEGDRLKEAGNINKSLSALGNVINALAQHskSRHIPYRDSKLTRLLQDSL-GGNSKTLMIANV 305
                          330       340
                   ....*....|....*....|....
gi 528471257   575 SPGMSSCEYTLNTLRYANRVKELN 598
Cdd:smart00129 306 SPSSSNLEETLSTLRFASRAKEIK 329
KISc_KIP3_like cd01370
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ...
267-597 5.11e-87

Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276821 [Multi-domain]  Cd Length: 345  Bit Score: 276.92  E-value: 5.11e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 267 RICVCVRKRPLNKKELAKKEIDVVTIPGNGVLLLhEPKQKVDLTKYLEN------------QTFHFDYSFDEDATNDLVY 334
Cdd:cd01370    1 SLTVAVRVRPFSEKEKNEGFRRIVKVMDNHMLVF-DPKDEEDGFFHGGSnnrdrrkrrnkeLKYVFDRVFDETSTQEEVY 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 335 RFTAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGdfsgksQNSSKGIYALAAQDVFTLLRQKRyVDMDLCPYVTFFEIY 414
Cdd:cd01370   80 EETTKPLVDGVLNGYNATVFAYGATGAGKTHTMLG------TPQEPGLMVLTMKELFKRIESLK-DEKEFEVSMSYLEIY 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 415 NGKVFDLLNKKTK-LRVLEDEKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQVILRRRNFL 493
Cdd:cd01370  153 NETIRDLLNPSSGpLELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVRQQDKT 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 494 --------YGKFSLVDLAGNERGTdvSSNDRHT-IVETAEINRSLLALKECIRSLGQ---NSEHIPFRMSKLTQVLRDSf 561
Cdd:cd01370  233 asinqqvrQGKLSLIDLAGSERAS--ATNNRGQrLKEGANINRSLLALGNCINALADpgkKNKHIPYRDSKLTRLLKDS- 309
                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 528471257 562 IGENSRTCMIAMISPGMSSCEYTLNTLRYANRVKEL 597
Cdd:cd01370  310 LGGNCRTVMIANISPSSSSYEETHNTLKYANRAKNI 345
KISc_KIF4 cd01372
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ...
270-593 1.88e-81

Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276823 [Multi-domain]  Cd Length: 341  Bit Score: 262.27  E-value: 1.88e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 270 VCVRKRPLNKKELAKKEIDVVT-IPGngvlllhepKQKVDLTKyleNQTFHFDYSFDEDATNDLVYRFTAKPLVKTIFEG 348
Cdd:cd01372    5 VAVRVRPLLPKEIIEGCRICVSfVPG---------EPQVTVGT---DKSFTFDYVFDPSTEQEEVYNTCVAPLVDGLFEG 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 349 GMATCFAYGQTGSGKTHTMGGDFSGKSQNSSKGIYALAAQDVFTLLRQKRYvDMDLCPYVTFFEIYNGKVFDLLNKKTK- 427
Cdd:cd01372   73 YNATVLAYGQTGSGKTYTMGTAYTAEEDEEQVGIIPRAIQHIFKKIEKKKD-TFEFQLKVSFLEIYNEEIRDLLDPETDk 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 428 ---LRVLEDEKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQVILRRR-------------- 490
Cdd:cd01372  152 kptISIREDSKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTkkngpiapmsaddk 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 491 -NFLYGKFSLVDLAGNERGTDV-SSNDRhtIVETAEINRSLLALKECIRSLGQNSE---HIPFRMSKLTQVLRDSfIGEN 565
Cdd:cd01372  232 nSTFTSKFHFVDLAGSERLKRTgATGDR--LKEGISINSGLLALGNVISALGDESKkgaHVPYRDSKLTRLLQDS-LGGN 308
                        330       340
                 ....*....|....*....|....*...
gi 528471257 566 SRTCMIAMISPGMSSCEYTLNTLRYANR 593
Cdd:cd01372  309 SHTLMIACVSPADSNFEETLNTLKYANR 336
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
268-597 2.19e-79

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 256.11  E-value: 2.19e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 268 ICVCVRKRPLNKKELAKKEIDVVTIPGNGVLLLHEPKQKvdltkylenqtFHFDYSFDEDATNDLVYRFTAKPLVKTIFE 347
Cdd:cd01374    2 ITVTVRVRPLNSREIGINEQVAWEIDNDTIYLVEPPSTS-----------FTFDHVFGGDSTNREVYELIAKPVVKSALE 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 348 GGMATCFAYGQTGSGKTHTMGGDfsgksqNSSKGIYALAAQDVFTLLRQKRYVDMDLcpYVTFFEIYNGKVFDLLN-KKT 426
Cdd:cd01374   71 GYNGTIFAYGQTSSGKTFTMSGD------EDEPGIIPLAIRDIFSKIQDTPDREFLL--RVSYLEIYNEKINDLLSpTSQ 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 427 KLRVLEDEKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQVILRRRN--------FLYGKFS 498
Cdd:cd01374  143 NLKIRDDVEKGVYVAGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIESSErgeleegtVRVSTLN 222
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 499 LVDLAGNER-GTDVSSNDRHTivETAEINRSLLALKECIRSL--GQNSEHIPFRMSKLTQVLRDSFIGeNSRTCMIAMIS 575
Cdd:cd01374  223 LIDLAGSERaAQTGAAGVRRK--EGSHINKSLLTLGTVISKLseGKVGGHIPYRDSKLTRILQPSLGG-NSRTAIICTIT 299
                        330       340
                 ....*....|....*....|..
gi 528471257 576 PGMSSCEYTLNTLRYANRVKEL 597
Cdd:cd01374  300 PAESHVEETLNTLKFASRAKKI 321
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
267-595 9.04e-74

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 242.64  E-value: 9.04e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 267 RICVCVRKRPLNKKELAKKEIDVVTIPGNGVLLLHEPKQ-KVDLTKYLENQTFHFDYSFD----ED---ATNDLVYRFTA 338
Cdd:cd01365    2 NVKVAVRVRPFNSREKERNSKCIVQMSGKETTLKNPKQAdKNNKATREVPKSFSFDYSYWshdsEDpnyASQEQVYEDLG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 339 KPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDfsgksqNSSKGIYALAAQDVFTLLRQKRYVDMDLCPYVTFFEIYNGKV 418
Cdd:cd01365   82 EELLQHAFEGYNVCLFAYGQTGSGKSYTMMGT------QEQPGIIPRLCEDLFSRIADTTNQNMSYSVEVSYMEIYNEKV 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 419 FDLLNKKTK-----LRVLEDEKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQVILRRRNF- 492
Cdd:cd01365  156 RDLLNPKPKknkgnLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLTQKRHd 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 493 --------LYGKFSLVDLAGNERGTDVSSN-DRhtIVETAEINRSLLALKECIRSLGQNSEH--------IPFRMSKLTQ 555
Cdd:cd01365  236 aetnltteKVSKISLVDLAGSERASSTGATgDR--LKEGANINKSLTTLGKVISALADMSSGkskkkssfIPYRDSVLTW 313
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 528471257 556 VLRDSfIGENSRTCMIAMISPGMSSCEYTLNTLRYANRVK 595
Cdd:cd01365  314 LLKEN-LGGNSKTAMIAAISPADINYEETLSTLRYADRAK 352
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
268-595 1.50e-72

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 238.26  E-value: 1.50e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 268 ICVCVRKRPLNKKELAKkEIDVVTIPgngvlllHEPKQKVDLT-KYLENQTFHFDYSFDEDATNDLVYRfTAKPLVKTIF 346
Cdd:cd01366    4 IRVFCRVRPLLPSEENE-DTSHITFP-------DEDGQTIELTsIGAKQKEFSFDKVFDPEASQEDVFE-EVSPLVQSAL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 347 EGGMATCFAYGQTGSGKTHTMGGDfsgksqNSSKGIYALAAQDVFTLLRQKRYVDMDLCPYVTFFEIYNGKVFDLLNKKT 426
Cdd:cd01366   75 DGYNVCIFAYGQTGSGKTYTMEGP------PESPGIIPRALQELFNTIKELKEKGWSYTIKASMLEIYNETIRDLLAPGN 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 427 ----KLRVLED-EKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQVILRRRNF-----LYGK 496
Cdd:cd01366  149 apqkKLEIRHDsEKGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGRNLqtgeiSVGK 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 497 FSLVDLAGNERgTDVSSNDRHTIVETAEINRSLLALKECIRSLGQNSEHIPFRMSKLTQVLRDSFIGeNSRTCMIAMISP 576
Cdd:cd01366  229 LNLVDLAGSER-LNKSGATGDRLKETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGG-NSKTLMFVNISP 306
                        330
                 ....*....|....*....
gi 528471257 577 GMSSCEYTLNTLRYANRVK 595
Cdd:cd01366  307 AESNLNETLNSLRFASKVN 325
KISc_BimC_Eg5 cd01364
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ...
268-595 1.08e-70

Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276815 [Multi-domain]  Cd Length: 353  Bit Score: 234.14  E-value: 1.08e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 268 ICVCVRKRPLNKKELAKKEIDVVTIPGNG--VLLLHEPKQKVDLTKylenqTFHFDYSFDEDATNDLVYRFTAKPLVKTI 345
Cdd:cd01364    4 IQVVVRCRPFNLRERKASSHSVVEVDPVRkeVSVRTGGLADKSSTK-----TYTFDMVFGPEAKQIDVYRSVVCPILDEV 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 346 FEGGMATCFAYGQTGSGKTHTMGGDFS-----GKSQNSSKGIYALAAQDVFTLLRQKryvDMDLCPYVTFFEIYNGKVFD 420
Cdd:cd01364   79 LMGYNCTIFAYGQTGTGKTYTMEGDRSpneeyTWELDPLAGIIPRTLHQLFEKLEDN---GTEYSVKVSYLEIYNEELFD 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 421 LL----NKKTKLRVLEDEKQQ--VNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQVILRRRN--- 491
Cdd:cd01364  156 LLspssDVSERLRMFDDPRNKrgVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSITIHIKEtti 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 492 -----FLYGKFSLVDLAGNER-GTDVSSNDRhtIVETAEINRSLLALKECIRSLGQNSEHIPFRMSKLTQVLRDSfIGEN 565
Cdd:cd01364  236 dgeelVKIGKLNLVDLAGSENiGRSGAVDKR--AREAGNINQSLLTLGRVITALVERAPHVPYRESKLTRLLQDS-LGGR 312
                        330       340       350
                 ....*....|....*....|....*....|
gi 528471257 566 SRTCMIAMISPGMSSCEYTLNTLRYANRVK 595
Cdd:cd01364  313 TKTSIIATISPASVNLEETLSTLEYAHRAK 342
KISc_KHC_KIF5 cd01369
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ...
268-595 5.43e-69

Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276820 [Multi-domain]  Cd Length: 325  Bit Score: 228.75  E-value: 5.43e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 268 ICVCVRKRPLNKKELAKKEIDVVTIPgngvlllhePKQKVDLTKYLENQTFHFDYSFDEDATNDLVYRFTAKPLVKTIFE 347
Cdd:cd01369    4 IKVVCRFRPLNELEVLQGSKSIVKFD---------PEDTVVIATSETGKTFSFDRVFDPNTTQEDVYNFAAKPIVDDVLN 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 348 GGMATCFAYGQTGSGKTHTMGGdfsGKSQNSSKGIYALAAQDVFTLLRqKRYVDMDLCPYVTFFEIYNGKVFDLLN-KKT 426
Cdd:cd01369   75 GYNGTIFAYGQTSSGKTYTMEG---KLGDPESMGIIPRIVQDIFETIY-SMDENLEFHVKVSYFEIYMEKIRDLLDvSKT 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 427 KLRVLEDEKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQVILRRRN-----FLYGKFSLVD 501
Cdd:cd01369  151 NLSVHEDKNRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQENvetekKKSGKLYLVD 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 502 LAGNERgTDVSSNDRHTIVETAEINRSLLALKECIRSLGQ-NSEHIPFRMSKLTQVLRDSfIGENSRTCMIAMISPGMSS 580
Cdd:cd01369  231 LAGSEK-VSKTGAEGAVLDEAKKINKSLSALGNVINALTDgKKTHIPYRDSKLTRILQDS-LGGNSRTTLIICCSPSSYN 308
                        330
                 ....*....|....*
gi 528471257 581 CEYTLNTLRYANRVK 595
Cdd:cd01369  309 ESETLSTLRFGQRAK 323
KISc_KIF3 cd01371
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ...
270-595 1.62e-65

Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276822 [Multi-domain]  Cd Length: 334  Bit Score: 219.64  E-value: 1.62e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 270 VCVRKRPLNKKELAKKEIDVVTI-PGNGVLLLHEPKQKV-DLTKylenqTFHFDYSFDEDATNDLVYRFTAKPLVKTIFE 347
Cdd:cd01371    5 VVVRCRPLNGKEKAAGALQIVDVdEKRGQVSVRNPKATAnEPPK-----TFTFDAVFDPNSKQLDVYDETARPLVDSVLE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 348 GGMATCFAYGQTGSGKTHTMGGDfsgKSQNSSKGIYALAAQDVFTLLrQKRYVDMDLCPYVTFFEIYNGKVFDLLNKKT- 426
Cdd:cd01371   80 GYNGTIFAYGQTGTGKTYTMEGK---REDPELRGIIPNSFAHIFGHI-ARSQNNQQFLVRVSYLEIYNEEIRDLLGKDQt 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 427 -KLRVLEDEKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQVILRRRNFL--------YGKF 497
Cdd:cd01371  156 kRLELKERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIECSEKGedgenhirVGKL 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 498 SLVDLAGNERGTDV-SSNDRhtIVETAEINRSLLALKECIRSLGQN-SEHIPFRMSKLTQVLRDSfIGENSRTCMIAMIS 575
Cdd:cd01371  236 NLVDLAGSERQSKTgATGER--LKEATKINLSLSALGNVISALVDGkSTHIPYRDSKLTRLLQDS-LGGNSKTVMCANIG 312
                        330       340
                 ....*....|....*....|
gi 528471257 576 PGMSSCEYTLNTLRYANRVK 595
Cdd:cd01371  313 PADYNYDETLSTLRYANRAK 332
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
270-698 1.58e-59

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 210.37  E-value: 1.58e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 270 VCVRKRPLNKKELAKKEIDVVTIPG-NGVLLLHEPKQK-VDLTKYLENqTFHFDYSFDEDATNDLVYRFTAKPLVKTIFE 347
Cdd:COG5059    9 LKSRLSSRNEKSVSDIKSTIRIIPGeLGERLINTSKKShVSLEKSKEG-TYAFDKVFGPSATQEDVYEETIKPLIDSLLL 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 348 GGMATCFAYGQTGSGKTHTMGGDfsgksqNSSKGIYALAAQDVFTLLRqKRYVDMDLCPYVTFFEIYNGKVFDLL-NKKT 426
Cdd:COG5059   88 GYNCTVFAYGQTGSGKTYTMSGT------EEEPGIIPLSLKELFSKLE-DLSMTKDFAVSISYLEIYNEKIYDLLsPNEE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 427 KLRVLEDEKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQVILRRRNFLYG-----KFSLVD 501
Cdd:COG5059  161 SLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGtsetsKLSLVD 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 502 LAGNERGTD-VSSNDRhtIVETAEINRSLLALKECIRSLG--QNSEHIPFRMSKLTQVLRDSfIGENSRTCMIAMISPGM 578
Cdd:COG5059  241 LAGSERAARtGNRGTR--LKEGASINKSLLTLGNVINALGdkKKSGHIPYRESKLTRLLQDS-LGGNCNTRVICTISPSS 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 579 SSCEYTLNTLRYANRVKELngisKGDAVENGSKLELSEEGNSSEEETVLPEFEAISRVSEMEERFYEELKGCSEVAKSME 658
Cdd:COG5059  318 NSFEETINTLKFASRAKSI----KNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQSQLSQSSLSGIFAYMQSLK 393
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|.
gi 528471257 659 LPSFDivaNLSNIDSFMR-KLQESYQALRSAIEAEQRVRMS 698
Cdd:COG5059  394 KETET---LKSRIDLIMKsIISGTFERKKLLKEEGWKYKST 431
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
261-591 2.40e-55

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 192.61  E-value: 2.40e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 261 DPVKthricVCVRKRPLNKKELAKKEIDVVTIPGNGVLLLHEPKQKVDLTK-----YLENQtFHFDYSFDEDATNDLVYR 335
Cdd:cd01368    1 DPVK-----VYLRVRPLSKDELESEDEGCIEVINSTTVVLHPPKGSAANKSernggQKETK-FSFSKVFGPNTTQKEFFQ 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 336 FTAKPLVKTIFEGGMATCFAYGQTGSGKTHTMggdfSGKSQNSskGIYALAAQDVFTLLRqkryvdmDLCPYVTFFEIYN 415
Cdd:cd01368   75 GTALPLVQDLLHGKNGLLFTYGVTNSGKTYTM----QGSPGDG--GILPRSLDVIFNSIG-------GYSVFVSYIEIYN 141
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 416 GKVFDLLN--------KKTKLRVLEDEKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAIL---- 483
Cdd:cd01368  142 EYIYDLLEpspssptkKRQSLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFtikl 221
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 484 ---------QVILRRRNFLYGKFSLVDLAGNERgTDVSSNDRHTIVETAEINRSLLALKECIRSLGQN-----SEHIPFR 549
Cdd:cd01368  222 vqapgdsdgDVDQDKDQITVSQLSLVDLAGSER-TSRTQNTGERLKEAGNINTSLMTLGTCIEVLRENqlqgtNKMVPFR 300
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 528471257 550 MSKLTQVLRDSFIGEnSRTCMIAMISPGMSSCEYTLNTLRYA 591
Cdd:cd01368  301 DSKLTHLFQNYFDGE-GKASMIVNVNPCASDYDETLHVMKFS 341
KISc_KID_like cd01376
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ...
267-595 7.25e-54

Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276827 [Multi-domain]  Cd Length: 319  Bit Score: 188.10  E-value: 7.25e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 267 RICVCVRKRPLNKKELAKKEIDVVTIPGNGVLLLHEPkqkvdlTKYLENQTFHFDYSFDEDATNDLVYRFTAKPLVKTIF 346
Cdd:cd01376    1 NVRVAVRVRPFVDGTAGASDPSCVSGIDSCSVELADP------RNHGETLKYQFDAFYGEESTQEDIYAREVQPIVPHLL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 347 EGGMATCFAYGQTGSGKTHTMGGDFsgksqnSSKGIYALAaqdVFTLLRQKRYVDMDLCPYVTFFEIYNGKVFDLLN-KK 425
Cdd:cd01376   75 EGQNATVFAYGSTGAGKTFTMLGSP------EQPGLMPLT---VMDLLQMTRKEAWALSFTMSYLEIYQEKILDLLEpAS 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 426 TKLRVLEDEKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQ--VILRRRN----FLYGKFSL 499
Cdd:cd01376  146 KELVIREDKDGNILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLikVDQRERLapfrQRTGKLNL 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 500 VDLAGNErgtdvssNDRHT------IVETAEINRSLLALKECIRSLGQNSEHIPFRMSKLTQVLRDSfIGENSRTCMIAM 573
Cdd:cd01376  226 IDLAGSE-------DNRRTgnegirLKESGAINSSLFVLSKVVNALNKNLPRIPYRDSKLTRLLQDS-LGGGSRCIMVAN 297
                        330       340
                 ....*....|....*....|..
gi 528471257 574 ISPGMSSCEYTLNTLRYANRVK 595
Cdd:cd01376  298 IAPERTFYQDTLSTLNFAARSR 319
KISc_KIF9_like cd01375
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ...
306-595 1.25e-53

Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276826 [Multi-domain]  Cd Length: 334  Bit Score: 187.79  E-value: 1.25e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 306 KVDLTK-YLENQTFHFDYSFD---EDATNDLVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGdfsGKSQNSSKG 381
Cdd:cd01375   33 KKDLRRgVVNNQQEDWSFKFDgvlHNASQELVYETVAKDVVSSALAGYNGTIFAYGQTGAGKTFTMTG---GTENYKHRG 109
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 382 IYALAAQDVFTLLrQKRYVDMdLCPYVTFFEIYNGKVFDLLNKK-------TKLRVLEDEKQQVNVVGLQEVPVSCVDDV 454
Cdd:cd01375  110 IIPRALQQVFRMI-EERPTKA-YTVHVSYLEIYNEQLYDLLSTLpyvgpsvTPMTILEDSPQNIFIKGLSLHLTSQEEEA 187
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 455 IKMIERGSACRTSGQTFANASSSRSHAILQVILRRRN-------FLYGKFSLVDLAGNERGTDVSSNDRhTIVETAEINR 527
Cdd:cd01375  188 LSLLFLGETNRIIASHTMNKNSSRSHCIFTIHLEAHSrtlssekYITSKLNLVDLAGSERLSKTGVEGQ-VLKEATYINK 266
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528471257 528 SLLALKECIRSLG-QNSEHIPFRMSKLTQVLRDSfIGENSRTCMIAMISPGMSSCEYTLNTLRYANRVK 595
Cdd:cd01375  267 SLSFLEQAIIALSdKDRTHVPFRQSKLTHVLRDS-LGGNCNTVMVANIYGEAAQLEETLSTLRFASRVK 334
KISc_KLP2_like cd01373
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ...
266-595 1.91e-52

Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276824 [Multi-domain]  Cd Length: 347  Bit Score: 185.02  E-value: 1.91e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 266 HRICVCVRKRPLNKKELAKKEIDVVTIPGNGVLLLHEPKQKvdltkylenqTFHFDYSFDEDATNDLVYRFTAKPLVKTI 345
Cdd:cd01373    1 DAVKVFVRIRPPAEREGDGEYGQCLKKLSSDTLVLHSKPPK----------TFTFDHVADSNTNQESVFQSVGKPIVESC 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 346 FEGGMATCFAYGQTGSGKTHTMGGDfSGKSQNSSKGIYALAA---QDVFTLLRQKRYVDMDLCPYV---TFFEIYNGKVF 419
Cdd:cd01373   71 LSGYNGTIFAYGQTGSGKTYTMWGP-SESDNESPHGLRGVIPrifEYLFSLIQREKEKAGEGKSFLckcSFLEIYNEQIY 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 420 DLLNK-KTKLRVLEDEKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQVILRRRN----FLY 494
Cdd:cd01373  150 DLLDPaSRNLKLREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIESWEkkacFVN 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 495 GKFS---LVDLAGNERGTDvSSNDRHTIVETAEINRSLLALKECIRSLGQNS----EHIPFRMSKLTQVLRDSfIGENSR 567
Cdd:cd01373  230 IRTSrlnLVDLAGSERQKD-THAEGVRLKEAGNINKSLSCLGHVINALVDVAhgkqRHVCYRDSKLTFLLRDS-LGGNAK 307
                        330       340
                 ....*....|....*....|....*...
gi 528471257 568 TCMIAMISPGMSSCEYTLNTLRYANRVK 595
Cdd:cd01373  308 TAIIANVHPSSKCFGETLSTLRFAQRAK 335
PLN03188 PLN03188
kinesin-12 family protein; Provisional
270-608 5.02e-39

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 155.48  E-value: 5.02e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257  270 VCVRKRPLNKKElaKKEIDVVTIPGNGVLLLhepkqkvdltkyleNQTFHFDYSFDEDATNDLVYRFTAKPLVKTIFEGG 349
Cdd:PLN03188  102 VIVRMKPLNKGE--EGEMIVQKMSNDSLTIN--------------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGF 165
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257  350 MATCFAYGQTGSGKTHTMGGDFSGKSQNSSKGIYALAAQDVFTLL------RQKRYVDMDL---CpYVTFFEIYNGKVFD 420
Cdd:PLN03188  166 NSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLfarineEQIKHADRQLkyqC-RCSFLEIYNEQITD 244
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257  421 LLNKKTK-LRVLEDEKQQVNVVGLQEVPVSCVDDVIKMIERGSACRTSGQTFANASSSRSHAILQVILRRR--------- 490
Cdd:PLN03188  245 LLDPSQKnLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRcksvadgls 324
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257  491 NFLYGKFSLVDLAGNERGTDV-SSNDRhtIVETAEINRSLLALKECIRSLGQNSE-----HIPFRMSKLTQVLRDSfIGE 564
Cdd:PLN03188  325 SFKTSRINLVDLAGSERQKLTgAAGDR--LKEAGNINRSLSQLGNLINILAEISQtgkqrHIPYRDSRLTFLLQES-LGG 401
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 528471257  565 NSRTCMIAMISPGMSSCEYTLNTLRYANRVKELngisKGDAVEN 608
Cdd:PLN03188  402 NAKLAMVCAISPSQSCKSETFSTLRFAQRAKAI----KNKAVVN 441
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
308-538 1.12e-07

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 51.96  E-value: 1.12e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 308 DLTKYLENQTFHFDYSFDEDATNDLVYRfTAKPLVKTIFEG-GMATCFAYGQTGSGKTHTMggdfsgksqnssKGIYala 386
Cdd:cd01363   10 ELPIYRDSKIIVFYRGFRRSESQPHVFA-IADPAYQSMLDGyNNQSIFAYGESGAGKTETM------------KGVI--- 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257 387 aqdvftllrqkryvdmdlcPYVtffeiyngkVFDLLNKKTKLRVLEDEKqqvnvvgLQEVPVSCVDDVIKMIERGSACRT 466
Cdd:cd01363   74 -------------------PYL---------ASVAFNGINKGETEGWVY-------LTEITVTLEDQILQANPILEAFGN 118
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 528471257 467 SgQTFANASSSRSHAILQVilrrrnflygkfsLVDLAGNERgtdvssndrhtivetaeINRSLLALKECIRS 538
Cdd:cd01363  119 A-KTTRNENSSRFGKFIEI-------------LLDIAGFEI-----------------INESLNTLMNVLRA 159
Microtub_bd pfam16796
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ...
314-422 4.63e-04

Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.


Pssm-ID: 465274 [Multi-domain]  Cd Length: 144  Bit Score: 41.05  E-value: 4.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528471257  314 ENQTFHFDYSFDEDATNDLVYRFTaKPLVKTIFEGGMATCFAYGQTGSGKThtmggdfSGKSQNSSKGIYALAAQdvftL 393
Cdd:pfam16796  53 KNKSFSFDRVFPPESEQEDVFQEI-SQLVQSCLDGYNVCIFAYGQTGSGSN-------DGMIPRAREQIFRFISS----L 120
                          90       100
                  ....*....|....*....|....*....
gi 528471257  394 LRQKRYVdMDLcpyvTFFEIYNGKVFDLL 422
Cdd:pfam16796 121 KKGWKYT-IEL----QFVEIYNESSQDLL 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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