|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
205-269 |
5.84e-36 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 129.83 E-value: 5.84e-36
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 528480690 205 VGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKV 269
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
205-269 |
5.19e-29 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 110.37 E-value: 5.19e-29
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 528480690 205 VGDRVLVGGT-KTGVVRYVGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCPPKFGLFAPIHKV 269
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKV 67
|
|
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
74-138 |
5.99e-28 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 107.10 E-value: 5.99e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 528480690 74 VGERVWVNGVKPGVIAYLGETQFSPGQWAGVVLNDLVGKNDGSVNGVRYFECQALQGIFTRPSKL 138
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
74-139 |
9.30e-25 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 98.04 E-value: 9.30e-25
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 528480690 74 VGERVWVNG-VKPGVIAYLGETQFSPGQWAGVVL-NDLVGKNDGSVNGVRYFECQALQGIFTRPSKLT 139
Cdd:smart01052 1 VGDRVEVGGgGRRGTVRYVGPTPFAPGVWVGVELdEPLRGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
340-950 |
1.24e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.91 E-value: 1.24e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 340 ALQEALKEKQqhIEQLLAERDLERAEVAKATSHICEVEKELAALKARhlqyATETESNLQQVRAMLASTQKDKMELANQL 419
Cdd:COG1196 217 ELKEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELEAE----LAELEAELEELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 420 EEEKRKVEDLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELALRKAEVEELQVRFQRgssgsatdaedgepgITSETLV 499
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEE---------------AEEELEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 500 LREQLLSVGRERREESSQLRERYEASLSTSQKEIERLKAITERQgQEISDLKQRLQQATREnmemmdswKAKLDALVGDH 579
Cdd:COG1196 356 AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA-AQLEELEEAEEALLER--------LERLEEELEEL 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 580 QRALEELKASLttdcgsgeinggegegsLPEMRAALEGLKMEHQLELENLKAKHEIDAAvmAKEREDLRSRLQELRDQLE 659
Cdd:COG1196 427 EEALAELEEEE-----------------EEEEEALEEAAEEEAELEEEEEALLELLAEL--LEEAALLEAALAELLEELA 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 660 D--SEENWKIQVETKSNQHTLEIKEVSEKLQK-------AELRIVDLDKSQEEREKVNQLLKEQLMLAEKKMVDYEALQK 730
Cdd:COG1196 488 EaaARLLLLLEAEADYEGFLEGVKAALLLAGLrglagavAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLK 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 731 AEAQSRAEILSLqEKLRVTENRLQAVEADHTTQDVNMIEnNDNSDEKVKLKQNVEETLEKltkrekevSTLTTQVDALKT 810
Cdd:COG1196 568 AAKAGRATFLPL-DKIRARAALAAALARGAIGAAVDLVA-SDLREADARYYVLGDTLLGR--------TLVAARLEAALR 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 811 QITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELRVLLLESPRHSAGVDRDLS 890
Cdd:COG1196 638 RAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERL 717
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 891 REVHRAEwRMKEQKLQDDIKTLREKLLLLGRERLSPDHRRYSMMDPSASDTEVARLRQRL 950
Cdd:COG1196 718 EEELEEE-ALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
203-263 |
8.13e-15 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 78.96 E-value: 8.13e-15
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 528480690 203 LKVGDRVLVGGTKtGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLF 263
Cdd:COG5244 4 LSVNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF 63
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
345-869 |
9.70e-15 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 79.01 E-value: 9.70e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 345 LKEKQQHIEQLLAERDLE------RAEVAKATSHICEVEKELAALKAR-----HLQYATETESNLQQVRAMLASTQK--- 410
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEitglteKASSARSQANSIQSQLEIIQEQARnqnsmYMRQLSDLESTVSQLRSELREAKRmye 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 411 DKM-ELANQLEEEKRKVEDLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELALRKAEVEELqvrFQRGSSGSAT----- 484
Cdd:pfam15921 342 DKIeELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRL---WDRDTGNSITidhlr 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 485 ---DAEDGE--------PGITSETLVLREQLLSV---GRERREESSQLRERYEASLSTSQKEIERL---KAITERQGQEI 547
Cdd:pfam15921 419 relDDRNMEvqrleallKAMKSECQGQMERQMAAiqgKNESLEKVSSLTAQLESTKEMLRKVVEELtakKMTLESSERTV 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 548 SDLKQRLQQATREnMEMMDSWKAKLDALVGDHQRALEELKA------SLTTDCGSGEINGGEGEGSLPEMRAALEGLKme 621
Cdd:pfam15921 499 SDLTASLQEKERA-IEATNAEITKLRSRVDLKLQELQHLKNegdhlrNVQTECEALKLQMAEKDKVIEILRQQIENMT-- 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 622 hqleleNLKAKHEIDAAVMAKEREDLRSRLQELRDQLEDseenWKIQVETKSNQhtleIKEVSEKLQKAELRIVDLDKSQ 701
Cdd:pfam15921 576 ------QLVGQHGRTAGAMQVEKAQLEKEINDRRLELQE----FKILKDKKDAK----IRELEARVSDLELEKVKLVNAG 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 702 EEREKVNQLLKEQ--LMLAEKKMV---------DYEALQKAEAQSRAEILSLQEKLRVTENRLQAvEADHTTQDVNMIEN 770
Cdd:pfam15921 642 SERLRAVKDIKQErdQLLNEVKTSrnelnslseDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQS-ELEQTRNTLKSMEG 720
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 771 NDNSDEKVKLKQnveetlekltkrEKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDA 850
Cdd:pfam15921 721 SDGHAMKVAMGM------------QKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKM 788
|
570 580
....*....|....*....|
gi 528480690 851 SGQL-VNISQELLKKERSLN 869
Cdd:pfam15921 789 AGELeVLRSQERRLKEKVAN 808
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
340-950 |
3.82e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.40 E-value: 3.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 340 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHLQYATETESNLQQVramlasTQKDKMELANQL 419
Cdd:TIGR02168 369 ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL------EEAELKELQAEL 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 420 EEEKRKVEDLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELALRKAEVEELQVRFQRGSSGSATDAEdgepgitsetLV 499
Cdd:TIGR02168 443 EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKA----------LL 512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 500 LREQLLSVGRERREESSQLRERYEASLSTSQKEieRLKAIT----ERQGQEISDLKQrlQQATRENMEMMDSWKAKLDAL 575
Cdd:TIGR02168 513 KNQSGLSGILGVLSELISVDEGYEAAIEAALGG--RLQAVVvenlNAAKKAIAFLKQ--NELGRVTFLPLDSIKGTEIQG 588
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 576 VGDHQRALEELKASLTTDCGSGEINGGEGEGSL-------PEMRAALEGLKMEHQL------------------------ 624
Cdd:TIGR02168 589 NDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvDDLDNALELAKKLRPGyrivtldgdlvrpggvitggsakt 668
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 625 ------------ELENLKAKHEIDAAVMAKEREDLRSRLQELRDQLEDSEENWkIQVETKSNQHTLEIKEVSEKLQKAEL 692
Cdd:TIGR02168 669 nssilerrreieELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL-EELSRQISALRKDLARLEAEVEQLEE 747
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 693 RIVDLDKSQEEREKVNQLLKEQLMLAEKKMVdyEALQKAEAQsRAEILSLQEKLRVTENRLQAVEADHTTQDvnmIENND 772
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELA--EAEAEIEEL-EAQIEQLKEELKALREALDELRAELTLLN---EEAAN 821
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 773 NSDEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASG 852
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 853 QLVNISQELLKKERSLNELRvlllesprhsagvdrdlsreVHRAEWRMKEQKLQDDIKTLREKLLLLGRERLSPDHRRYS 932
Cdd:TIGR02168 902 ELRELESKRSELRRELEELR--------------------EKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALEN 961
|
650 660
....*....|....*....|
gi 528480690 933 M--MDPSASDTEVARLRQRL 950
Cdd:TIGR02168 962 KieDDEEEARRRLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
340-959 |
1.53e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.48 E-value: 1.53e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 340 ALQEALKEKQ-----QHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHlqyaTETESNLQQVRAMLASTQKDKME 414
Cdd:TIGR02168 217 ELKAELRELElallvLRLEELREELEELQEELKEAEEELEELTAELQELEEKL----EELRLEVSELEEEIEELQKELYA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 415 LANQLEEEKRKVEDLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELALRKAEVEELQVRFQrGSSGSATDAEDGEPGIT 494
Cdd:TIGR02168 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE-SLEAELEELEAELEELE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 495 SETLVLREQLLSVGRERREESSQL------RERYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATRENMEMMdsw 568
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQIaslnneIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE--- 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 569 KAKLDALVGDHQRALEELKASLTtdcgSGEINGGEGEGSLPEMRAALEGLkmehQLELENLKAKHEIDAAVMaKEREDLR 648
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELE----EAEQALDAAERELAQLQARLDSL----ERLQENLEGFSEGVKALL-KNQSGLS 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 649 SRLQELRDQLEdSEENWKIQVET--------------------------------------------------------- 671
Cdd:TIGR02168 520 GILGVLSELIS-VDEGYEAAIEAalggrlqavvvenlnaakkaiaflkqnelgrvtflpldsikgteiqgndreilknie 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 672 --------------------------------------------------------------------KSNQHTL----E 679
Cdd:TIGR02168 599 gflgvakdlvkfdpklrkalsyllggvlvvddldnalelakklrpgyrivtldgdlvrpggvitggsaKTNSSILerrrE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 680 IKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLAEKKMVDYE----ALQKAEAQSRAEILSLQEKLRVTENRLQA 755
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSrqisALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 756 VEADHTTQDVNMIENNDNSDEKVKLKQNVEETLEKLtkrEKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTR 835
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL---KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 836 LEAELETMTKKSHDASGQLVNISQELLKKERSLNElrvllLESPRHSAGVDRDlSREVHRAEWRMKEQKLQDDIKTLREK 915
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEE-----LESELEALLNERA-SLEEALALLRSELEELSEELRELESK 909
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 528480690 916 LLLLGRERLSPDHRRysmmdpSASDTEVARLRQRLLNTEDALRN 959
Cdd:TIGR02168 910 RSELRRELEELREKL------AQLELRLEGLEVRIDNLQERLSE 947
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
74-135 |
2.63e-12 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 70.87 E-value: 2.63e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 528480690 74 VGERVWVNGVKpGVIAYLGETQFSPGQWAGVVLNDLVGKNDGSVNGVRYFECQALQGIFTRP 135
Cdd:COG5244 6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
339-846 |
5.35e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 5.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 339 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHLQYATETESNLQQV---RAMLASTQKDKMEL 415
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELeeaEEELEEAEAELAEA 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 416 ANQLEEEKRKVEDLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELALRKAEVEELQvrfqrgssgSATDAEDGEPGITS 495
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE---------EELEELEEALAELE 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 496 ETLVLREQLLSVGRERREESSQLRERYEASLSTSQKEIERLKAITERQGQEISDLKQR---LQQATRENMEMMDSWKAKL 572
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARlllLLEAEADYEGFLEGVKAAL 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 573 DALVGD------HQRALEELKASLTTDCGSGEINGGEGEGSLPEMRAALEGLK--------------MEHQLELENLKAK 632
Cdd:COG1196 515 LLAGLRglagavAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKaakagratflpldkIRARAALAAALAR 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 633 HEIDAAVMA----KEREDLRSRLQELRDQLEDSEENWKIQVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVN 708
Cdd:COG1196 595 GAIGAAVDLvasdLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAAL 674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 709 QLLKEQLMLAEKKMVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDVNMIENNDnsDEKVKLKQNVEETL 788
Cdd:COG1196 675 LEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELL--EELLEEEELLEEEA 752
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 528480690 789 EKLTKREKEVSTLTTQVDALKTQITAL---------------EEKVRLGEKTADgLIKEKTRLE---AELETMTKK 846
Cdd:COG1196 753 LEELPEPPDLEELERELERLEREIEALgpvnllaieeyeeleERYDFLSEQRED-LEEARETLEeaiEEIDRETRE 827
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
326-916 |
2.52e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.78 E-value: 2.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 326 ETSSRYARKISGTTALQEALKEKQQHIEQLLAERDlERAEVAKATSHICEVEKELAALKARHLQYATETESNLQQVRAML 405
Cdd:PRK03918 145 ESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIE-RLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 406 AstqkdkmelanQLEEEKRKVEDLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELALRKAEVEELqvrfqrgssgsatd 485
Cdd:PRK03918 224 E-----------KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEL-------------- 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 486 aedgepgitsETLVLREQLLSVGRERREESSQLRERYEASLSTSQKEIERLK---AITERQGQEISDLKQRLQQATRENM 562
Cdd:PRK03918 279 ----------EEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEeeiNGIEERIKELEEKEERLEELKKKLK 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 563 EMmdswKAKLDALVGDHqRALEELKASLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEHQLELENLKAKheidAAVMAK 642
Cdd:PRK03918 349 EL----EKRLEELEERH-ELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITAR----IGELKK 419
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 643 EREDLRSRLQEL-----------RDQLEDSEENWKiqvetksNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVnqLL 711
Cdd:PRK03918 420 EIKELKKAIEELkkakgkcpvcgRELTEEHRKELL-------EEYTAELKRIEKELKEIEEKERKLRKELRELEKV--LK 490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 712 KEQLMLAEKKMVDY--EALQKAEAQSRAEILSLQEKLRVTENRLQAVEADhttqdvnmIENNDNSDEKVK-LKQNVEETL 788
Cdd:PRK03918 491 KESELIKLKELAEQlkELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGE--------IKSLKKELEKLEeLKKKLAELE 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 789 EKLTKREKEVSTLTTQVDALK-TQITALEEKVRLGEK------TADGLIKEKTRLEAELETMTKKSHDASGQLVNISQEL 861
Cdd:PRK03918 563 KKLDELEEELAELLKELEELGfESVEELEERLKELEPfyneylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRL 642
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 528480690 862 LKKERSLNELRVLL-LESPRHSAGVDRDLSREVHRAEWRMKE-QKLQDDIKTLREKL 916
Cdd:PRK03918 643 EELRKELEELEKKYsEEEYEELREEYLELSRELAGLRAELEElEKRREEIKKTLEKL 699
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
329-874 |
3.06e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.78 E-value: 3.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 329 SRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKArHLQYATETESNLQQVRAMLAST 408
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-LKEEIEELEKELESLEGSKRKL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 409 QKDKMELANQLEEEKRKVEDLQFRVEEESITKGD------LEQTTVEEKTRVMQLEEELALRKAEVEELQVRFQRGSSGS 482
Cdd:PRK03918 258 EEKIRELEERIEELKKEIEELEEKVKELKELKEKaeeyikLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 483 ATDAEdgepgITSETLVLREQLlsvgrERREESSQLRERYEASLstsqKEIERLKAitERQGQEISDLKQRLQQATRENM 562
Cdd:PRK03918 338 ERLEE-----LKKKLKELEKRL-----EELEERHELYEEAKAKK----EELERLKK--RLTGLTPEKLEKELEELEKAKE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 563 EMMD------SWKAKLDALVGDHQRALEELKASlttdcgsgeinggegEGSLPEMRAALEglkmEHqlELENLKAKHEID 636
Cdd:PRK03918 402 EIEEeiskitARIGELKKEIKELKKAIEELKKA---------------KGKCPVCGRELT----EE--HRKELLEEYTAE 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 637 AAVMAKEREDLRSRLQELRDQLEDSEENWKIQVETKSNQHTLE-IKEVSEKLQKAELRivDLDKSQEEREKVNQL---LK 712
Cdd:PRK03918 461 LKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEqLKELEEKLKKYNLE--ELEKKAEEYEKLKEKlikLK 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 713 EQLMLAEKKMVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAV------EADHTTQDVNMIENNDNS------------ 774
Cdd:PRK03918 539 GEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELgfesveELEERLKELEPFYNEYLElkdaekeleree 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 775 DEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQITalEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQL 854
Cdd:PRK03918 619 KELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTL 696
|
570 580
....*....|....*....|
gi 528480690 855 VNISQELLKKERSLNELRVL 874
Cdd:PRK03918 697 EKLKEELEEREKAKKELEKL 716
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
323-957 |
7.48e-11 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 66.28 E-value: 7.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 323 LLTETSSRYARKISGTTALQEALKEK----QQHIEQLLAERDLER--AEVAKATSHIcEVEKELAALKARHLQYATETES 396
Cdd:pfam05483 159 LLKETCARSAEKTKKYEYEREETRQVymdlNNNIEKMILAFEELRvqAENARLEMHF-KLKEDHEKIQHLEEEYKKEIND 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 397 NLQQVRAMLAstqkdkmelanQLEEEKRKVEDLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELALRKAEVEELQVRFQ 476
Cdd:pfam05483 238 KEKQVSLLLI-----------QITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQ 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 477 RGSSGSATDAEDGEpgITSETLVlreQLLSVGRERREESSQLRERYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQ 556
Cdd:pfam05483 307 RSMSTQKALEEDLQ--IATKTIC---QLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKI 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 557 ATREnMEMMDSWKAKLDALVGDHQRALEELKASLTTD--CGSGEINGGEGEGSLPEMRAALEGLKMEHQLELENLkakhE 634
Cdd:pfam05483 382 ITME-LQKKSSELEEMTKFKNNKEVELEELKKILAEDekLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDL----E 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 635 IDAAVMAKEREDLRSRLQELRDQLEDsEENWKIQVETKSNQHTLEIKEVSeklQKAELRIVDLDKSQEErekVNQLLKEQ 714
Cdd:pfam05483 457 IQLTAIKTSEEHYLKEVEDLKTELEK-EKLKNIELTAHCDKLLLENKELT---QEASDMTLELKKHQED---IINCKKQE 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 715 lmlaEKKMVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAvEADHTTQDVNMIENNDNSDEK-VKLKQNVEETLEK-LT 792
Cdd:pfam05483 530 ----ERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKC-KLDKSEENARSIEYEVLKKEKqMKILENKCNNLKKqIE 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 793 KREKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTkKSHDASGQLVNISQELLKKErsLNELR 872
Cdd:pfam05483 605 NKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEII-DNYQKEIEDKKISEEKLLEE--VEKAK 681
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 873 VLLLESPRHSAGVDRDLSREVHRAEWRMKEQKLQDDiKTLREKLLLLGrerLSPDHRRYSMMDPSASDTEVARLRQRLLN 952
Cdd:pfam05483 682 AIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYD-KIIEERDSELG---LYKNKEQEQSSAKAALEIELSNIKAELLS 757
|
....*
gi 528480690 953 TEDAL 957
Cdd:pfam05483 758 LKKQL 762
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
332-872 |
2.48e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.16 E-value: 2.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 332 ARKISGTTALQEALKEKQqhiEQLLAERDLERAEVAK-ATSHICEVEKELAALKARHLQYATETESNLQQVRA--MLAST 408
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKDAE---EAKKAEEERNNEEIRKfEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAdeAKKAE 1299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 409 QKDKMELANQLEEEKRKVEDLQFRVEEESiTKGDLEQTTVEEKTR---VMQLEEELALRKAEVEELQVRFQRGSSGSATD 485
Cdd:PTZ00121 1300 EKKKADEAKKKAEEAKKADEAKKKAEEAK-KKADAAKKKAEEAKKaaeAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 486 AEDgEPGITSETLVLREQLLSVGRERREESSQLRERYEASLSTSQ--KEIERLKAITE-----RQGQEISDLKQRLQQAT 558
Cdd:PTZ00121 1379 KAD-AAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEakKKAEEKKKADEakkkaEEAKKADEAKKKAEEAK 1457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 559 R-ENMEMMDSWKAKLDALvgdHQRALEELKA-SLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEHQLELENLKAKHEID 636
Cdd:PTZ00121 1458 KaEEAKKKAEEAKKADEA---KKKAEEAKKAdEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 637 AAVMAKEREDLRsRLQELR--DQLEDSEENWKIQVETKSNQHTLEIKEVSEKLQKAE----------------LRIVDLD 698
Cdd:PTZ00121 1535 KADEAKKAEEKK-KADELKkaEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEearieevmklyeeekkMKAEEAK 1613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 699 KSQEEREKVNQLLKEQlmlAEKKMVDYEALQKAEAQSRAEILSLQEKlrvtENRLQAveadhtTQDVNMIENNDNSDEKV 778
Cdd:PTZ00121 1614 KAEEAKIKAEELKKAE---EEKKKVEQLKKKEAEEKKKAEELKKAEE----ENKIKA------AEEAKKAEEDKKKAEEA 1680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 779 KLKQNVEETLEKLTKREKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNIS 858
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIA 1760
|
570
....*....|....
gi 528480690 859 QELLKKERSLNELR 872
Cdd:PTZ00121 1761 HLKKEEEKKAEEIR 1774
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
375-866 |
5.22e-10 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 63.25 E-value: 5.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 375 EVEKELAALKARHLQYATETESnLQQVRAMLASTQKDKMELANQLEEEKRKVEDLQFRVEEESitkgdLEQTTVEEKTRV 454
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEE-LEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEA-----LEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 455 MQLEEELAlrkaEVEELQVRFQRgssgsatdaedgepgitsetlvLREQLLSVGRERREESSQLRERYEASLSTSQKEIE 534
Cdd:COG4717 149 EELEERLE----ELRELEEELEE----------------------LEAELAELQEELEELLEQLSLATEEELQDLAEELE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 535 RLKAITERQGQEISDLKQRLQQATREnmemMDSWKAKLdaLVGDHQRALEELK-----ASLTTDCGSGEINGGEGEGSLP 609
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEE----LEQLENEL--EAAALEERLKEARlllliAAALLALLGLGGSLLSLILTIA 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 610 EMRAALEGLKMEHQLELENLKAKHEIDAavmakEREDLRSRLQELRDQledSEENWKIQVETKSNQHTLEIKEVSEKLQK 689
Cdd:COG4717 277 GVLFLVLGLLALLFLLLAREKASLGKEA-----EELQALPALEELEEE---ELEELLAALGLPPDLSPEELLELLDRIEE 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 690 AELRIVDLDKSQEEREKVNQLLKEQLMLAEKKMVDYEALQKAEAQSRaEILSLQEKLRVTENRLQAVEADhttqdvnmIE 769
Cdd:COG4717 349 LQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAE-EYQELKEELEELEEQLEELLGE--------LE 419
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 770 NNDNSDEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQITALEEKVRLGEktadgLIKEKTRLEAELETMTKK--S 847
Cdd:COG4717 420 ELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAE-----LLQELEELKAELRELAEEwaA 494
|
490
....*....|....*....
gi 528480690 848 HDASGQLVNISQELLKKER 866
Cdd:COG4717 495 LKLALELLEEAREEYREER 513
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
509-962 |
1.51e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.98 E-value: 1.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 509 RERREESSQLRERYEASlstsQKEIERLKAiterqgqEISDLKQRLQQATREnmemmdswKAKLDALVGDHQRALEELKA 588
Cdd:PRK02224 233 RETRDEADEVLEEHEER----REELETLEA-------EIEDLRETIAETERE--------REELAEEVRDLRERLEELEE 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 589 SLTtDCGSGEINGGEGEGSLPEMRAALEGLKMEHQLELENLKA---KHEIDAAVMAKEREDLRSRLQELRDQ---LEDSE 662
Cdd:PRK02224 294 ERD-DLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVaaqAHNEEAESLREDADDLEERAEELREEaaeLESEL 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 663 ENWKIQVETKSNqhtlEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLmlaekkmvdyEALQKAEAQSRAEILSL 742
Cdd:PRK02224 373 EEAREAVEDRRE----EIEELEEEIEELRERFGDAPVDLGNAEDFLEELREER----------DELREREAELEATLRTA 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 743 QEKLRVTENRLQAVEADHTTQDVN---MIENNDNSDEKV--------KLKQNVE------ETLEKLTKREKEVSTLTTQV 805
Cdd:PRK02224 439 RERVEEAEALLEAGKCPECGQPVEgspHVETIEEDRERVeeleaeleDLEEEVEeveerlERAEDLVEAEDRIERLEERR 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 806 DALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELrvlllESPRHSAGV 885
Cdd:PRK02224 519 EDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAEL-----KERIESLER 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 886 DRDLSREVHRAEwrmkeqklqDDIKTLREKLLLLG------RERLSPDHRRYSMMDPSASDTEVARLRQRLLNTEDALRN 959
Cdd:PRK02224 594 IRTLLAAIADAE---------DEIERLREKREALAelnderRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQ 664
|
...
gi 528480690 960 ALE 962
Cdd:PRK02224 665 VEE 667
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
326-873 |
1.84e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.08 E-value: 1.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 326 ETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHLQYATETESNLQQVRAM- 404
Cdd:PTZ00121 1239 AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAd 1318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 405 -----LASTQKDKMELANQLEEEKRKVEdlqFRVEEESITKGDLEQTtvEEKTRVMQLEEELALRKAEVEELQVRFQRGS 479
Cdd:PTZ00121 1319 eakkkAEEAKKKADAAKKKAEEAKKAAE---AAKAEAEAAADEAEAA--EEKAEAAEKKKEEAKKKADAAKKKAEEKKKA 1393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 480 SGSATDAEdgEPGITSETLVLREQLLSVGRERREESSQLRERYEASLSTSQK---EIERLKAITERQGQEI---SDLKQR 553
Cdd:PTZ00121 1394 DEAKKKAE--EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAkkaDEAKKKAEEAKKAEEAkkkAEEAKK 1471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 554 LQQATRENMEMMDSWKAKLDAlvGDHQRALEELKASLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEHQLELENLKAKH 633
Cdd:PTZ00121 1472 ADEAKKKAEEAKKADEAKKKA--EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 634 EIDAAVMAKEREDLRsRLQELRDQLEDSEENWK-----IQVETKSNQHTLEIKEVSEKLQKAELRivdldKSQEEREKVN 708
Cdd:PTZ00121 1550 ELKKAEELKKAEEKK-KAEEAKKAEEDKNMALRkaeeaKKAEEARIEEVMKLYEEEKKMKAEEAK-----KAEEAKIKAE 1623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 709 QLLKEQlmlAEKKMVDYEALQKAEAQSRAE----------ILSLQEKLRVTENRLQAVEADHTTQDVNMIENNDNSDEKV 778
Cdd:PTZ00121 1624 ELKKAE---EEKKKVEQLKKKEAEEKKKAEelkkaeeenkIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 779 K-----LKQNVEETLEKLTKREKEVSTLTTQVDALKTQitALEEKVRLGEKTADGliKEKTRLEAELETMTKKSHDASGQ 853
Cdd:PTZ00121 1701 AkkaeeLKKKEAEEKKKAEELKKAEEENKIKAEEAKKE--AEEDKKKAEEAKKDE--EEKKKIAHLKKEEEKKAEEIRKE 1776
|
570 580
....*....|....*....|
gi 528480690 854 LVNISQELLKKERSLNELRV 873
Cdd:PTZ00121 1777 KEAVIEEELDEEDEKRRMEV 1796
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
509-862 |
4.10e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 4.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 509 RERREESsqlreryEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATR--ENMEMMDSWKAKLDALvgdHQRALEEL 586
Cdd:COG1196 171 KERKEEA-------ERKLEATEENLERLEDILGELERQLEPLERQAEKAERyrELKEELKELEAELLLL---KLRELEAE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 587 KASLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEHQLELENLKAK----HEIDAAVMAKERE-----DLRSRLQELRDQ 657
Cdd:COG1196 241 LEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAqaeeYELLAELARLEQDiarleERRRELEERLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 658 LEDSEENWKIQVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLAEKKMVDYEALQKAEAQSRA 737
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 738 EILSLQEKLRVTENRLQAVEADHTTQDVNMIENNdnsDEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQITALEE 817
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELE---EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 528480690 818 KVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELL 862
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGL 522
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
322-904 |
5.16e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.54 E-value: 5.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 322 GLLTETSSRYARKISGTTALQEALK--EKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHLQYATETESNLQ 399
Cdd:PTZ00121 1098 GKAEEAKKTETGKAEEARKAEEAKKkaEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKK 1177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 400 QVRAMLA-----STQKDKMELANQLE-----EEKRKVEDLQFRVEE---ESITKGDLEQTTVEEKTRVMQLEEELALRKA 466
Cdd:PTZ00121 1178 AEAARKAeevrkAEELRKAEDARKAEaarkaEEERKAEEARKAEDAkkaEAVKKAEEAKKDAEEAKKAEEERNNEEIRKF 1257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 467 EVEELQVRFQRGSSGSATDAEDGEPGITSETLVLREQLLSVGRERREESSQLRERYEASLSTSQKEIERLKAITERQGQE 546
Cdd:PTZ00121 1258 EEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKK 1337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 547 ISDLKQRLQQATRENMEMMDSWKAKLDALVGDHQRALEELK-ASLTTDCGSGEINGGEGEGSLPEMRAALEGLKM--EHQ 623
Cdd:PTZ00121 1338 AEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKkADAAKKKAEEKKKADEAKKKAEEDKKKADELKKaaAAK 1417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 624 LELENLKAK-HEIDAAVMAKEREDLRSRLQELRDQLEDSE--ENWKIQVETKSNQHTLEIK--------EVSEKLQKAEL 692
Cdd:PTZ00121 1418 KKADEAKKKaEEKKKADEAKKKAEEAKKADEAKKKAEEAKkaEEAKKKAEEAKKADEAKKKaeeakkadEAKKKAEEAKK 1497
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 693 RIVDLDKSQEEREKVNQLLK-------EQLMLAEKKMvDYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDV 765
Cdd:PTZ00121 1498 KADEAKKAAEAKKKADEAKKaeeakkaDEAKKAEEAK-KADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDK 1576
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 766 NMIE---------NNDNSDEKVKLKQNVEETLEKLTKREKEVSTLTTQV---DALKTQITALEEKVRLGEKTADGLIKEK 833
Cdd:PTZ00121 1577 NMALrkaeeakkaEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELkkaEEEKKKVEQLKKKEAEEKKKAEELKKAE 1656
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 528480690 834 TRLEAELETMTKKSHDASGQlvniSQELLKKE---RSLNELRVLLLESPRHSAGVDRDLSREVHRAEWRMKEQK 904
Cdd:PTZ00121 1657 EENKIKAAEEAKKAEEDKKK----AEEAKKAEedeKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEE 1726
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
395-913 |
1.15e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 59.36 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 395 ESNLQQVRAMLASTQKDKMELAnqLEEEKRKVEDLQFRVEEES----ITKGDLEQTTVEEKTRVMQLEEElalRKAEVEe 470
Cdd:pfam15921 58 EVELDSPRKIIAYPGKEHIERV--LEEYSHQVKDLQRRLNESNelheKQKFYLRQSVIDLQTKLQEMQME---RDAMAD- 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 471 lqvrFQRGSSGSATDaedgepgitsetlvLREQLLSVGRERrEESSQLRERYeasLSTSQKEIERL-KAITERQG--QEI 547
Cdd:pfam15921 132 ----IRRRESQSQED--------------LRNQLQNTVHEL-EAAKCLKEDM---LEDSNTQIEQLrKMMLSHEGvlQEI 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 548 SDLKQRLQQATRENMEMMDSWKA-KLDALVGDHQRALEELKASLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEHQLEL 626
Cdd:pfam15921 190 RSILVDFEEASGKKIYEHDSMSTmHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRI 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 627 ENLKAKHEIDAAVMAKEREDLRSRLQELRDQLEdseenwkIQVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREK 706
Cdd:pfam15921 270 EQLISEHEVEITGLTEKASSARSQANSIQSQLE-------IIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYED 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 707 VNQLLKEQLMLAEKKMvdyealqkaeAQSRAEILSLQEKLRVTENRLQAVEAD-HTTQDVNMIENNDNS---DEKVKLKQ 782
Cdd:pfam15921 343 KIEELEKQLVLANSEL----------TEARTERDQFSQESGNLDDQLQKLLADlHKREKELSLEKEQNKrlwDRDTGNSI 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 783 NVEETLEKLTKREKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELL 862
Cdd:pfam15921 413 TIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLE 492
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 528480690 863 KKERSLNELRVLLLESPRHSAGVDRDLSREVHRAEWRMKE-QKLQDDIKTLR 913
Cdd:pfam15921 493 SSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQElQHLKNEGDHLR 544
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
341-927 |
1.64e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 58.83 E-value: 1.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 341 LQEALKEKQQHIEQLLAERDLER--AEVAKATSHICEVEKELAALKARHLQYATETESNLQQVRAMLASTQKDKMELANQ 418
Cdd:pfam02463 352 EAEEEEEEELEKLQEKLEQLEEEllAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEI 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 419 LEEEKRKVEDLQFRVEEESITKGDLEQT------TVEEKTRVMQLEEELALRKAEVEELQVRFQRGSSGSATDAEDGEPG 492
Cdd:pfam02463 432 LEEEEESIELKQGKLTEEKEELEKQELKllkdelELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKV 511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 493 ITSETLVLREQLLSVGRERREESSQLRERYEASLSTS-QKEIERLKAITERQGQEISDLKQRLQQATRENMEMMDSWKAK 571
Cdd:pfam02463 512 LLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAvIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPL 591
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 572 LDALVGDHQRALEELKASLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEHQLELENLKAKHEIDAAVMAKEREDLRSRL 651
Cdd:pfam02463 592 KSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSEL 671
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 652 QELRDQLEDSEENWKIQVETKSNQHTLEIKEVSEKLQKAELRivdlDKSQEEREKVNQLLKEQLMLAEKKMVDYEALQKA 731
Cdd:pfam02463 672 TKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELK----KLKLEAEELLADRVQEAQDKINEELKLLKQKIDE 747
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 732 EAQSRAEILSLQEKLRVTENRLQAVEADHTTQDVNmIENNDNSDEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQ 811
Cdd:pfam02463 748 EEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREK-TEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQ 826
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 812 ITALEEKVRLGEKTadgLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELRVLLLESPRHSAGVDRDLSR 891
Cdd:pfam02463 827 EEKIKEEELEELAL---ELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELE 903
|
570 580 590
....*....|....*....|....*....|....*.
gi 528480690 892 EVHRAEWRMKEQKLQDDIKTLREKLLLLGRERLSPD 927
Cdd:pfam02463 904 EESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEE 939
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
333-591 |
1.80e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 1.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 333 RKISGTTALQEALKEKQQHIEQLLAERDLERAE-----------VAKATSHICEVEKELAALKARhlqyATETESNLQQV 401
Cdd:TIGR02168 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTEleaeieeleerLEEAEEELAEAEAEIEELEAQ----IEQLKEELKAL 801
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 402 RAMLASTQKDKMELANQLEEEKRKVEDLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELALRKAEVEELQVRFQRGSSG 481
Cdd:TIGR02168 802 REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE 881
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 482 SATDAEDGEpgitsetlVLREQLLSVGRERREESSQLRErYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATREN 561
Cdd:TIGR02168 882 RASLEEALA--------LLRSELEELSEELRELESKRSE-LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT 952
|
250 260 270
....*....|....*....|....*....|
gi 528480690 562 MEMMDSWKAKLDALVGDHQRALEELKASLT 591
Cdd:TIGR02168 953 LEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
343-790 |
5.14e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.46 E-value: 5.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 343 EALKEKQQHIEQLLAERdlERAEVAKATSHicEVEK-ELAALKARHLQYATETESNLQQVR----AMLASTQKDKMELAN 417
Cdd:PTZ00121 1401 EEDKKKADELKKAAAAK--KKADEAKKKAE--EKKKaDEAKKKAEEAKKADEAKKKAEEAKkaeeAKKKAEEAKKADEAK 1476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 418 QLEEEKRKVEDLQFRVEEESiTKGDLEQTTVEEKTRVMQLEEELALRKAEveELQVRFQRGSSGSATDAED---GEPGIT 494
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEEAK-KKADEAKKAAEAKKKADEAKKAEEAKKAD--EAKKAEEAKKADEAKKAEEkkkADELKK 1553
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 495 SETLVLREQLLSVGRERREE---------SSQLRERYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATREnmEMM 565
Cdd:PTZ00121 1554 AEELKKAEEKKKAEEAKKAEedknmalrkAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA--EEE 1631
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 566 DSWKAKLDALVGDHQRALEELKASLTTDCGSGEINGGEGEGslpEMRAALEGLKMEhqlELENLKAKHEIDAAVMAKERE 645
Cdd:PTZ00121 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE---DKKKAEEAKKAE---EDEKKAAEALKKEAEEAKKAE 1705
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 646 DLRSRLQELR---DQLEDSEENWKIQVETksnqhtLEIKEVSEKLQKAELRivdldKSQEEREKVNQLLKEQLMLAEKKM 722
Cdd:PTZ00121 1706 ELKKKEAEEKkkaEELKKAEEENKIKAEE------AKKEAEEDKKKAEEAK-----KDEEEKKKIAHLKKEEEKKAEEIR 1774
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528480690 723 VDYEALQKAEAQSraeilslqeklrvtENRLQAVEADHTTQDV-----NMIENNDNSDEKVKLKQNVEETLEK 790
Cdd:PTZ00121 1775 KEKEAVIEEELDE--------------EDEKRRMEVDKKIKDIfdnfaNIIEGGKEGNLVINDSKEMEDSAIK 1833
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
341-877 |
5.80e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 57.11 E-value: 5.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 341 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHlqyaTETESNLQQVRAMLastqKDKMELANQLE 420
Cdd:pfam01576 24 AESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARK----QELEEILHELESRL----EEEEERSQQLQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 421 EEKRK----VEDLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELALrkaeVEELQVRFQRgssgsatdaedgEPGITSE 496
Cdd:pfam01576 96 NEKKKmqqhIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILL----LEDQNSKLSK------------ERKLLEE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 497 TLVLREQLLSVGRERREESSQLRERYEASLSTSQkeiERLKAiTERQGQEISDLKQRLQQATRENMEMMDSWKAKLDALV 576
Cdd:pfam01576 160 RISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLE---ERLKK-EEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELR 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 577 GDHQRALEELKASLT---------TDCGSGEINGGEGEGSLPE-------MRAALEGLKMEHQLELENLKAKHEIDAAVM 640
Cdd:pfam01576 236 AQLAKKEEELQAALArleeetaqkNNALKKIRELEAQISELQEdleseraARNKAEKQRRDLGEELEALKTELEDTLDTT 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 641 AKEREdLRSR----LQELRDQLEDSEENWKIQVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQL- 715
Cdd:pfam01576 316 AAQQE-LRSKreqeVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELr 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 716 MLAEKKMVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAV-----EADHTTQDVNMIE--NNDNSDEKVKLKQNVEETL 788
Cdd:pfam01576 395 TLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLsklqsELESVSSLLNEAEgkNIKLSKDVSSLESQLQDTQ 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 789 EKLTKREKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSL 868
Cdd:pfam01576 475 ELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQREL 554
|
....*....
gi 528480690 869 NELRVLLLE 877
Cdd:pfam01576 555 EALTQQLEE 563
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
353-904 |
6.16e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 6.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 353 EQLLAERDLE--RAEVAKATSHICEVEKELAALKARHLQYATETESNLQQVRAM---LASTQKDKMELANQLEEEKRKVE 427
Cdd:TIGR02169 288 EQLRVKEKIGelEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELereIEEERKRRDKLTEEYAELKEELE 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 428 DLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELALRKAEVEELQVRFQRGSSGSA------TDAEDGEPGITSETLVLR 501
Cdd:TIGR02169 368 DLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELAdlnaaiAGIEAKINELEEEKEDKA 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 502 EQlLSVGRERREESSQLRERYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATRE------NMEMMDSWK------ 569
Cdd:TIGR02169 448 LE-IKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERvrggraVEEVLKASIqgvhgt 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 570 --------------------AKLDALV----GDHQRALEELK---ASLTTDCGSGEINGGEGEGSLPEMRA----ALEGL 618
Cdd:TIGR02169 527 vaqlgsvgeryataievaagNRLNNVVveddAVAKEAIELLKrrkAGRATFLPLNKMRDERRDLSILSEDGvigfAVDLV 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 619 KMEHQLE------------LENLKAKHEI--------------------------------DAAVMAKEREDLRSRLQEL 654
Cdd:TIGR02169 607 EFDPKYEpafkyvfgdtlvVEDIEAARRLmgkyrmvtlegelfeksgamtggsraprggilFSRSEPAELQRLRERLEGL 686
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 655 RDQLEDSEENwKIQVETKSNQHTLEIKEVSEKLQKAELRIVDLdksQEEREKVNQLLKEQLMLAEKKMVDYEALQKAEAQ 734
Cdd:TIGR02169 687 KRELSSLQSE-LRRIENRLDELSQELSDASRKIGEIEKEIEQL---EQEEEKLKERLEELEEDLSSLEQEIENVKSELKE 762
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 735 SRAEILSLQEKLRVTENRLQAVEADHTTQDVNMIEN--NDNSDEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQI 812
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAelSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR 842
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 813 TALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELRVLLlesprhsagvdRDLSRE 892
Cdd:TIGR02169 843 IDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI-----------EELEAQ 911
|
650
....*....|..
gi 528480690 893 VHRAEWRMKEQK 904
Cdd:TIGR02169 912 IEKKRKRLSELK 923
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
340-843 |
7.46e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.59 E-value: 7.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 340 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALkarhlqyaTETESNLQQVRAMLASTQKDKMELANQL 419
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREEL--------ETLEAEIEDLRETIAETEREREELAEEV 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 420 EEEKRKVEDLQFRVEE--ESITKGDLEQTTVEEKtrvmqlEEELALRKAEVEElQVRFQRGSSGSATDAEDGEpgiTSET 497
Cdd:PRK02224 282 RDLRERLEELEEERDDllAEAGLDDADAEAVEAR------REELEDRDEELRD-RLEECRVAAQAHNEEAESL---REDA 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 498 LVLREQllsvGRERREESSQLRERYEASLSTSQKEIERLKAITErqgqEISDLKQRLQQA--TRENMEmmdswkAKLDAL 575
Cdd:PRK02224 352 DDLEER----AEELREEAAELESELEEAREAVEDRREEIEELEE----EIEELRERFGDApvDLGNAE------DFLEEL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 576 VGDHQRALEELkASLTTDCGSGEINGGEGEGSL-----PEMRAALEG------------LKMEHQLELENLKAKHE---- 634
Cdd:PRK02224 418 REERDELRERE-AELEATLRTARERVEEAEALLeagkcPECGQPVEGsphvetieedreRVEELEAELEDLEEEVEevee 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 635 -IDAAVMAKEREDLRSRLQELRDQLEDSEENWKIQVETKSNQ----------HTLEIKEVSEKLQKAELRivdldkSQEE 703
Cdd:PRK02224 497 rLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERaeelreraaeLEAEAEEKREAAAEAEEE------AEEA 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 704 REKVNQLLKEQLMLAEK--KMVDYEALQKAEAQSRAEILSLQEKL-----RVTENRLQAVEADHTTQDVNMIENNDNSDE 776
Cdd:PRK02224 571 REEVAELNSKLAELKERieSLERIRTLLAAIADAEDEIERLREKRealaeLNDERRERLAEKRERKRELEAEFDEARIEE 650
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 528480690 777 KVKLKQNVEETLEKLtkrEKEVSTLTTQVDALKTQITALEEKVrlgeKTADGLIKEKTRLEAELETM 843
Cdd:PRK02224 651 AREDKERAEEYLEQV---EEKLDELREERDDLQAEIGAVENEL----EELEELRERREALENRVEAL 710
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
324-757 |
1.01e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.23 E-value: 1.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 324 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHLQY--ATETESNLQQV 401
Cdd:PRK03918 298 LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYeeAKAKKEELERL 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 402 RAMLASTQKDKMElaNQLEEEKRKVEDLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELA--------LRKAEVEELQV 473
Cdd:PRK03918 378 KKRLTGLTPEKLE--KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGkcpvcgreLTEEHRKELLE 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 474 RFQRGSSGSATDAEDGEPGITS--------ETLVLREQLLSVGRERREESSQLRERYEA----SLSTSQKEIERLKAITE 541
Cdd:PRK03918 456 EYTAELKRIEKELKEIEEKERKlrkelrelEKVLKKESELIKLKELAEQLKELEEKLKKynleELEKKAEEYEKLKEKLI 535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 542 RQGQEISDLKQRLqqatrENMEMMDSWKAKLDALVGDHQRALEELKASLTTDCGSGEINGGEGEGSL-PEMRAALEGLKM 620
Cdd:PRK03918 536 KLKGEIKSLKKEL-----EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELePFYNEYLELKDA 610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 621 EHQLELENLKAKHEIDAAVMA-KEREDLRSRLQELRDQLEDSEENW-KIQVETKSNQHTleikEVSEKLQKAELRIVDLD 698
Cdd:PRK03918 611 EKELEREEKELKKLEEELDKAfEELAETEKRLEELRKELEELEKKYsEEEYEELREEYL----ELSRELAGLRAELEELE 686
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 528480690 699 KSQEEREKVNQLLKEQLMLAEKKMVDYEALQKAeaqsRAEILSLQEKLR-----VTENRLQAVE 757
Cdd:PRK03918 687 KRREEIKKTLEKLKEELEEREKAKKELEKLEKA----LERVEELREKVKkykalLKERALSKVG 746
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
642-846 |
1.20e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.80 E-value: 1.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 642 KEREDLRSRLQELRDQLEdsEENWKIQVETKSNQhtleikEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLAEK- 720
Cdd:TIGR04523 349 KELTNSESENSEKQRELE--EKQNEIEKLKKENQ------SYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQe 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 721 ---KMVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDVNMienNDNSDEKVKLKQNVEETLEKLTKREKE 797
Cdd:TIGR04523 421 kelLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQL---KVLSRSINKIKQNLEQKQKELKSKEKE 497
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 528480690 798 VSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKK 846
Cdd:TIGR04523 498 LKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDE 546
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
634-979 |
1.47e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 1.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 634 EIDAAVMAKEREDLRSRLQELRDQLEdseenwkiQVETKSNQHTLEIKEVSEKLQKAELRIvdldksQEEREKVNQLLKE 713
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELE--------ELEAELEELEAELAELEAELEELRLEL------EELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 714 qlmlaekkmvdYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDvnmienndnsDEKVKLKQNVEETLEKLTK 793
Cdd:COG1196 290 -----------EYELLAELARLEQDIARLEERRRELEERLEELEEELAELE----------EELEELEEELEELEEELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 794 REKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELRV 873
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 874 LLLESprhsagVDRDLSREVHRAEWRMKEQKLQDDIKTLREKLLLLGRERLSPDhrrysmmdpsASDTEVARLRQRLLNT 953
Cdd:COG1196 429 ALAEL------EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE----------AALAELLEELAEAAAR 492
|
330 340
....*....|....*....|....*.
gi 528480690 954 EDALRNALEHNQHVDQLVQAMRTRPD 979
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAG 518
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
320-746 |
1.81e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 1.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 320 RTGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHlqyatetesnlq 399
Cdd:TIGR02169 651 KSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI------------ 718
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 400 qvramlASTQKDKMELANQLEEEKRKVEDLQFRVE--EESITKGDLEQTTVEEktRVMQLEEELALRKAEVEELQvrfqr 477
Cdd:TIGR02169 719 ------GEIEKEIEQLEQEEEKLKERLEELEEDLSslEQEIENVKSELKELEA--RIEELEEDLHKLEEALNDLE----- 785
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 478 gssgsATDAEDGEPGITSETLVLREqllsvgrERREESSQLRErYEASLSTSQKEIERLKAITERQGQEISDLKQRlQQA 557
Cdd:TIGR02169 786 -----ARLSHSRIPEIQAELSKLEE-------EVSRIEARLRE-IEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ-IKS 851
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 558 TRENMEMMDSWKAKLDALVGDHQRALEELKASLttdcgsgeinggegegslpemrAALEGLKMEHQLELENLK-AKHEID 636
Cdd:TIGR02169 852 IEKEIENLNGKKEELEEELEELEAALRDLESRL----------------------GDLKKERDELEAQLRELErKIEELE 909
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 637 AAVMAKER--EDLRSRLQELRDQLEDSEENWKIQVETKSNqhTLEIKEVSEKLQKAELRIVDLdksqeerEKVNQLLKEQ 714
Cdd:TIGR02169 910 AQIEKKRKrlSELKAKLEALEEELSEIEDPKGEDEEIPEE--ELSLEDVQAELQRVEEEIRAL-------EPVNMLAIQE 980
|
410 420 430
....*....|....*....|....*....|..
gi 528480690 715 LMLAEKKMVDYEALQKAEAQSRAEILSLQEKL 746
Cdd:TIGR02169 981 YEEVLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
391-1005 |
2.58e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 2.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 391 ATETESNLQQVRAMLASTQKDKMELANQLEEEKRKVEDLQfRVEE----ESITKGDlEQTTVEEKTRVMQLEEELALRKA 466
Cdd:PTZ00121 1089 ADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDAR-KAEEarkaEDARKAE-EARKAEDAKRVEIARKAEDARKA 1166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 467 EVeelqvrfqrgsSGSATDAEDGEPGITSETLVLREQLLSVGRERREESSQlreRYEaslsTSQKEIERLKAITERQGQE 546
Cdd:PTZ00121 1167 EE-----------ARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAAR---KAE----EERKAEEARKAEDAKKAEA 1228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 547 IsdlkQRLQQATRENMEMMDSWKAKLDALVGDHQRALEELKASLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEHQLEL 626
Cdd:PTZ00121 1229 V----KKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKA 1304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 627 ENLKAKHEidaavMAKEREDLRSRLQELR---DQLEDSEENWKIQVETKSNQHTLEIKEVSEKLQKAElriVDLDKSQEE 703
Cdd:PTZ00121 1305 DEAKKKAE-----EAKKADEAKKKAEEAKkkaDAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE---AAEKKKEEA 1376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 704 REKVNQLLKEqlmlAEKKMVDYEALQKA-EAQSRAEIL--SLQEKLRVTENRLQAVE---ADHTTQDVNMIENNDNSDEK 777
Cdd:PTZ00121 1377 KKKADAAKKK----AEEKKKADEAKKKAeEDKKKADELkkAAAAKKKADEAKKKAEEkkkADEAKKKAEEAKKADEAKKK 1452
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 778 VKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQitALEEKVRLGEKTADGLiKEKTRLEAELETMTKKSHDASGQLVNI 857
Cdd:PTZ00121 1453 AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD--EAKKKAEEAKKKADEA-KKAAEAKKKADEAKKAEEAKKADEAKK 1529
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 858 SQELLKKERSLNELRVLLLESPRHSAGVDRdlSREVHRAEWRMKEQKLQDDIKTLREKLLLLGRERLSPDHRRYSmmDPS 937
Cdd:PTZ00121 1530 AEEAKKADEAKKAEEKKKADELKKAEELKK--AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE--EEK 1605
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 528480690 938 ASDTEVARLRQRLLNTEDALRNALEHNQHVDQLVQAMRTRPDKNQAHASANSANGIHQEDPSFTQEEE 1005
Cdd:PTZ00121 1606 KMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED 1673
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
519-820 |
2.83e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 2.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 519 RERYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATRENMEMMDSWKAKLdalvgdhQRALEELKASLTTdCGSGE 598
Cdd:TIGR02169 239 KEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRV-------KEKIGELEAEIAS-LERSI 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 599 INGGEGEGSLPEMRAALEGLKMEHQLELENLKAKHEidaaVMAKEREDLRSRLQELRDQLEDSEEnwKIQVETKSNQHTL 678
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE----EERKRRDKLTEEYAELKEELEDLRA--ELEEVDKEFAETR 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 679 EikEVSEKLQKaelrivdLDKSQEERekvNQLLKEQLMLAEKKmvdyEALQKAEAQSRAEILSLQEKLRVTENRLQAVEA 758
Cdd:TIGR02169 385 D--ELKDYREK-------LEKLKREI---NELKRELDRLQEEL----QRLSEELADLNAAIAGIEAKINELEEEKEDKAL 448
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 528480690 759 DHTTQDVNMIEnndNSDEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQITALEEKVR 820
Cdd:TIGR02169 449 EIKKQEWKLEQ---LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVR 507
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
318-973 |
5.84e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.82 E-value: 5.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 318 PSRTGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAkatshicEVEKELAALKARHLQYATETESN 397
Cdd:pfam02463 152 PERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELK-------LKEQAKKALEYYQLKEKLELEEE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 398 LQQVRAMLASTQKdKMELANQLEEEKRKVEDLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELALRKAEVEELQVRfQR 477
Cdd:pfam02463 225 YLLYLDYLKLNEE-RIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKS-EL 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 478 GSSGSATDAEDGEPGITSETLVLREQLLSVGRERREESSQLRERYEASLSTSQKEIERLKAIT---ERQGQEISDLKQRL 554
Cdd:pfam02463 303 LKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQeklEQLEEELLAKKKLE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 555 QQAT------RENMEMMDSWKAKLDALVGDHQRALEELKASLTTDCGSGEINGGEGEGSLP----------EMRAALEGL 618
Cdd:pfam02463 383 SERLssaaklKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQgklteekeelEKQELKLLK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 619 KMEHQLELENLKAKHEIDAAVMAKEREDLRSRLQELRDQLEDSEENWKIQVETKSNQHTLEIKEVSEKLQKAELRIVDLD 698
Cdd:pfam02463 463 DELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYK 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 699 KSQEEREKVNQLLKEQLMLAEKKMVDYEALQKAEAQSRAEILslqEKLRVTENRLQAVEADHTTQDVNMIENNDNSDEKV 778
Cdd:pfam02463 543 VAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLI---PKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDD 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 779 KLkQNVEETLEKLTKREKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDA----SGQL 854
Cdd:pfam02463 620 KR-AKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAkeeiLRRQ 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 855 VNISQELLKKERSLNELRVLLLESPRHSAGVDRDLSREVHRAEWRMKEQKLQDDIKTLREKLLLLG--RERLSPDHRRYS 932
Cdd:pfam02463 699 LEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEekSELSLKEKELAE 778
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 528480690 933 MMDPSASDTEVARLRQRLLNTEDALRNALEHNQHVDQLVQA 973
Cdd:pfam02463 779 EREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEE 819
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
339-817 |
6.59e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.51 E-value: 6.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 339 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHlqyaTETESNLQQVRAmlastqkDKMELANQ 418
Cdd:PRK02224 275 EELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRD----EELRDRLEECRV-------AAQAHNEE 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 419 LEEEKRKVEDLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELALRKAEVEELQVRFqrgssgsaTDAEdgepgitsetl 498
Cdd:PRK02224 344 AESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERF--------GDAP----------- 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 499 VLREQLLSVGRERREESSQLRER---YEASLSTSQKEIERLKAITERQ-----GQEISDlkqrlqQATRENMEMMDSWKA 570
Cdd:PRK02224 405 VDLGNAEDFLEELREERDELREReaeLEATLRTARERVEEAEALLEAGkcpecGQPVEG------SPHVETIEEDRERVE 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 571 KLDALVGDHQRALEELKASLTTdcgsgeinggegEGSLPEMRAALEGLKmEHQLELENLKAKHEIDAAVMAKEREDLRSR 650
Cdd:PRK02224 479 ELEAELEDLEEEVEEVEERLER------------AEDLVEAEDRIERLE-ERREDLEELIAERRETIEEKRERAEELRER 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 651 LQELRDQLEDSEENWKiQVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLAEKKmvdyEALQK 730
Cdd:PRK02224 546 AAELEAEAEEKREAAA-EAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKR----EALAE 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 731 AEAQSRaeilslqEKLRVTENRLQAVEADHttqDVNMIEnnDNSDEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKT 810
Cdd:PRK02224 621 LNDERR-------ERLAEKRERKRELEAEF---DEARIE--EAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVEN 688
|
....*..
gi 528480690 811 QITALEE 817
Cdd:PRK02224 689 ELEELEE 695
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
637-875 |
6.67e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 6.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 637 AAVMAKEREDLRSRLQELRDQLEdseenwkiQVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLm 716
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIA--------ELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAEL- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 717 laekkmvdyEALQKAEAQSRAEILSLQEKLRvteNRLQAVEADHTTQDVNMIENNDNSDEKVKLKQNVEETLEkltKREK 796
Cdd:COG4942 86 ---------AELEKEIAELRAELEAQKEELA---ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAP---ARRE 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528480690 797 EVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELRVLL 875
Cdd:COG4942 151 QAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
509-841 |
8.06e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 8.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 509 RERREESsqlreryEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATR--------ENMEMmDSWKAKLDALVgDHQ 580
Cdd:TIGR02168 171 KERRKET-------ERKLERTRENLDRLEDILNELERQLKSLERQAEKAERykelkaelRELEL-ALLVLRLEELR-EEL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 581 RALEELKASLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEHQ------LELENLKAKHEIDAAVMAKEREDLRSRLQEL 654
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEelqkelYALANEISRLEQQKQILRERLANLERQLEEL 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 655 RDQLEDSEENwKIQVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLmlaekkmvdyEALQKAEAQ 734
Cdd:TIGR02168 322 EAQLEELESK-LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL----------ETLRSKVAQ 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 735 SRAEILSLQEKLRVTENRLQAVEADHTTQDVNMIENNDNSDE--KVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQI 812
Cdd:TIGR02168 391 LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaeLKELQAELEELEEELEELQEELERLEEALEELREEL 470
|
330 340
....*....|....*....|....*....
gi 528480690 813 TALEEKVRLGEKTADGLIKEKTRLEAELE 841
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARLDSLERLQE 499
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
395-667 |
2.34e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.56 E-value: 2.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 395 ESNLQQVRAMLASTQKdkmELANQLEEEKRKVEDLQ-----FRVEEESItkgDLEQTTVEEKTRVMQLEEELALRKAEVE 469
Cdd:COG3206 163 EQNLELRREEARKALE---FLEEQLPELRKELEEAEaaleeFRQKNGLV---DLSEEAKLLLQQLSELESQLAEARAELA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 470 ELQVRFQRGSSGSATDAEDGEPGITSETLV-LREQLLSVGRERREESSQLRERYEaslstsqkEIERLKAiterqgqEIS 548
Cdd:COG3206 237 EAEARLAALRAQLGSGPDALPELLQSPVIQqLRAQLAELEAELAELSARYTPNHP--------DVIALRA-------QIA 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 549 DLKQRLQQATRENMEMMDSWKAKLDALVGDHQRALEELKASLTTdcgsgeinggegegsLPEMRAALEGLkmehQLELEN 628
Cdd:COG3206 302 ALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAE---------------LPELEAELRRL----EREVEV 362
|
250 260 270
....*....|....*....|....*....|....*....
gi 528480690 629 LKAKHeidaavmakerEDLRSRLQELRDQLEDSEENWKI 667
Cdd:COG3206 363 ARELY-----------ESLLQRLEEARLAEALTVGNVRV 390
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
500-950 |
2.63e-06 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 51.28 E-value: 2.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 500 LREQLLSVGRERREESSQLRERYEASLSTSQKEIERLKAITERqgqeISDLKQRL---QQATRENMEMMDSWKAKLDALV 576
Cdd:pfam05557 14 LQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKR----IRLLEKREaeaEEALREQAELNRLKKKYLEALN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 577 G------DHQRALEELKASLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEHQLELENlkakheidaavmAKEREDLRSR 650
Cdd:pfam05557 90 KklnekeSQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAK------------ASEAEQLRQN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 651 LQELRDQLEDSEEnwKIQVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQ----EEREKVNQLLKEQLMLAEKKMvDYE 726
Cdd:pfam05557 158 LEKQQSSLAEAEQ--RIKELEFEIQSQEQDSEIVKNSKSELARIPELEKELerlrEHNKHLNENIENKLLLKEEVE-DLK 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 727 ALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDVNMIENNDNSDEKVKLKQnveetlEKLTKREkEVSTLTTQVD 806
Cdd:pfam05557 235 RKLEREEKYREEAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQ------REIVLKE-ENSSLTSSAR 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 807 ALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASgQLVNISQELLK---KERSLNELRVLLLESPRHSA 883
Cdd:pfam05557 308 QLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLT-KERDGYRAILEsydKELTMSNYSPQLLERIEEAE 386
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 528480690 884 GVDRDLsrEVHRAEWRMKEQKLQDDIKTLREKLLLLGRErLSPDHRRYSMMDPSASDTEVARLRQRL 950
Cdd:pfam05557 387 DMTQKM--QAHNEEMEAQLSVAEEELGGYKQQAQTLERE-LQALRQQESLADPSYSKEEVDSLRRKL 450
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
339-874 |
2.86e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.51 E-value: 2.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 339 TALQEALKEKQQHIEQLL-------AERDLERAEVAKATSHICEVEKELAALKARHLQYATETESNLQQVRAMLASTQKD 411
Cdd:TIGR00618 375 HTLTQHIHTLQQQKTTLTqklqslcKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCE 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 412 KMELANQLEEEKRKVEDLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELALRKAEVEELQVRFQRGSSGSATdaedgep 491
Cdd:TIGR00618 455 KLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLT------- 527
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 492 gitsetlvlreQLLSVGRERREESSQLRERYEASLSTSQKEIERLKAITERQGQEISDLKQRLQqatrenmemmdSWKAK 571
Cdd:TIGR00618 528 -----------RRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDN-----------RSKED 585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 572 LDALVGDHQRALEELKASLttdcgsgeinggegegslpEMRAALEGLKMEHQLELENLKAKHEIDAAVMAKEREDLRSRL 651
Cdd:TIGR00618 586 IPNLQNITVRLQDLTEKLS-------------------EAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLT 646
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 652 QELRDQLEDSEENWKIQVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLAEKKMVDYEALQKA 731
Cdd:TIGR00618 647 ALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENA 726
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 732 EAQSRAEILSLQEKLRVTENRLQAvEADHTTQDVNMIENNDNSDEKVKLK--QNVEETLEKLTKREKEVSTLTTQVDALK 809
Cdd:TIGR00618 727 SSSLGSDLAAREDALNQSLKELMH-QARTVLKARTEAHFNNNEEVTAALQtgAELSHLAAEIQFFNRLREEDTHLLKTLE 805
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 528480690 810 TQI-----------TALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELRVL 874
Cdd:TIGR00618 806 AEIgqeipsdedilNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGI 881
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
341-871 |
3.05e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 3.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 341 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHLQYATE---TESNLQQVRAML-----------A 406
Cdd:TIGR04523 129 LEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEklnIQKNIDKIKNKLlklelllsnlkK 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 407 STQKDKmELANQLEEEKRKVEDLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELALRKAEVEELQVRFQRgSSGSATDA 486
Cdd:TIGR04523 209 KIQKNK-SLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQ-NNKKIKEL 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 487 EDGEPGITSETLVLREQ-----LLSVGRERREESSQLRErYEASLSTSQKEIERLKaiterqgQEISDLKQRLQQATREN 561
Cdd:TIGR04523 287 EKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEE-IQNQISQNNKIISQLN-------EQISQLKKELTNSESEN 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 562 MEMMDSWKAKLDA---LVGDHQRALEELKaSLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEHQL---ELENLKAKHeI 635
Cdd:TIGR04523 359 SEKQRELEEKQNEiekLKKENQSYKQEIK-NLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELlekEIERLKETI-I 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 636 DAAVMAKEREDLRSRLQELRDQLEDSEENWKIQVET-----KSNQHTLEIKEVSEKLQKAELRIVDLDKSQEErEKVNQL 710
Cdd:TIGR04523 437 KNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVlsrsiNKIKQNLEQKQKELKSKEKELKKLNEEKKELE-EKVKDL 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 711 LKEQLMLAEKKmvdyEALQKAEAQSRAEILSLQEKLRVTENRLqaveadhtTQDVNMIENNDNSDEKVKLKQNVEETLEK 790
Cdd:TIGR04523 516 TKKISSLKEKI----EKLESEKKEKESKISDLEDELNKDDFEL--------KKENLEKEIDEKNKEIEELKQTQKSLKKK 583
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 791 LTKREKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNE 870
Cdd:TIGR04523 584 QEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPE 663
|
.
gi 528480690 871 L 871
Cdd:TIGR04523 664 I 664
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
346-851 |
4.34e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 4.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 346 KEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHLQYATETESNLQQVRAMlASTQKDKMELANQLEEEKRK 425
Cdd:PTZ00121 1341 AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK-AEEDKKKADELKKAAAAKKK 1419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 426 VEDLQFRVEEesITKGDLEQTTVEEKTRVMQLEEELA-LRKAEVEELQVRFQRGSSGSATDAEDGEPGitsetlvlrEQL 504
Cdd:PTZ00121 1420 ADEAKKKAEE--KKKADEAKKKAEEAKKADEAKKKAEeAKKAEEAKKKAEEAKKADEAKKKAEEAKKA---------DEA 1488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 505 LSVGRERREESSQLRERYEAslstsQKEIERLKAITERQGQEisdlkqRLQQAtrENMEMMDSWKAKLDALVGDHQRALE 584
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEA-----KKKADEAKKAEEAKKAD------EAKKA--EEAKKADEAKKAEEKKKADELKKAE 1555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 585 ELKASlttdcgsgeinggEGEGSLPEMRAALEGLKMEHQLELENLKAKHEIDAAVMAKEREDLRSRLQELRDQLED--SE 662
Cdd:PTZ00121 1556 ELKKA-------------EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAkiKA 1622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 663 ENWKIQVETKSNQHTLEIKEVSEKLQKAELRivdldkSQEEREKVNQllKEQLMLAEKKMVDYEALQKAEAQSRAEILSL 742
Cdd:PTZ00121 1623 EELKKAEEEKKKVEQLKKKEAEEKKKAEELK------KAEEENKIKA--AEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 743 ----QEKLRVTENRLQAVEADHTTQDVNMiENNDNSDEKVKLKQNVEE---TLEKLTKREKEvstlTTQVDALKTQITAL 815
Cdd:PTZ00121 1695 kkeaEEAKKAEELKKKEAEEKKKAEELKK-AEEENKIKAEEAKKEAEEdkkKAEEAKKDEEE----KKKIAHLKKEEEKK 1769
|
490 500 510
....*....|....*....|....*....|....*...
gi 528480690 816 EEKVRLGEKTA--DGLIKEKTRLEAELETMTKKSHDAS 851
Cdd:PTZ00121 1770 AEEIRKEKEAVieEELDEEDEKRRMEVDKKIKDIFDNF 1807
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
502-954 |
9.52e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.68 E-value: 9.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 502 EQLLSVGRERREESSQLRErYEASLSTSQKEIERLKAITErqgqEISDLKQRLQQATREnmemmdswKAKLDALVGDHQR 581
Cdd:PRK03918 200 KELEEVLREINEISSELPE-LREELEKLEKEVKELEELKE----EIEELEKELESLEGS--------KRKLEEKIRELEE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 582 ALEELKASLttdcgsgeinggegeGSLPEMRAALEGLK--MEHQLELENLKAKHEIDAAVMAKEREDLRSRLQELRDQLE 659
Cdd:PRK03918 267 RIEELKKEI---------------EELEEKVKELKELKekAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 660 DSEENWKiqvetksnqhtlEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLA--------EKKMVDYEALQKA 731
Cdd:PRK03918 332 ELEEKEE------------RLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKkrltgltpEKLEKELEELEKA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 732 EAQSRAEILSLQEKLRVTENRL----QAVEADHTTQDV--------------NMIENNDNSDEKV-KLKQNVEETLEKLT 792
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKEIkelkKAIEELKKAKGKcpvcgrelteehrkELLEEYTAELKRIeKELKEIEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 793 KREKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELR 872
Cdd:PRK03918 480 KELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 873 VLLLESprhsagvdRDLSREVHRAEWRMKEQKLQdDIKTLREKLlllgrERLSPDHRRYSMMDPSASDTEVARLRQRLLN 952
Cdd:PRK03918 560 ELEKKL--------DELEEELAELLKELEELGFE-SVEELEERL-----KELEPFYNEYLELKDAEKELEREEKELKKLE 625
|
..
gi 528480690 953 TE 954
Cdd:PRK03918 626 EE 627
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
340-560 |
1.43e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 340 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARhlqyATETESNLQQVRAMLASTQKDKMELANQL 419
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR----IRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 420 EEEKRKVEDL---QFRVEEESITKGDLEQTTVEEKTRVMQLEEELA-LRKAEVEELQVRFQRgssgsatdAEDGEPGITS 495
Cdd:COG4942 100 EAQKEELAELlraLYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLApARREQAEELRADLAE--------LAALRAELEA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 528480690 496 ETLVLrEQLLSVGRERREESSQLRERYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATRE 560
Cdd:COG4942 172 ERAEL-EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
352-662 |
1.76e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 1.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 352 IEQLLAERDLERAEVAKATSHICEVEKELAALKARH-----LQYATETESNLQQVRAMLASTQKDK----------MELA 416
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERRealqrLAEYSWDEIDVASAEREIAELEAELerldassddlAALE 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 417 NQLEEEKRKVEDLQFRVEeesitkgdleqttvEEKTRVMQLEEELALRKAEVEELQVRFQRGSSGSATDAEDGepgitse 496
Cdd:COG4913 692 EQLEELEAELEELEEELD--------------ELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL------- 750
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 497 tlvLREQLLSVGRERREEssQLRERYEaslstsqkeiERLKAITERQGQEISDLKQRLQQATRENMEMMDSWKAKLDALv 576
Cdd:COG4913 751 ---LEERFAAALGDAVER--ELRENLE----------ERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESL- 814
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 577 GDHQRALEELKASlttdcgsgeinggegegSLPEMRAALEGLKMEHQLE-LENLKAKheidaavMAKEREDLRSRLQELR 655
Cdd:COG4913 815 PEYLALLDRLEED-----------------GLPEYEERFKELLNENSIEfVADLLSK-------LRRAIREIKERIDPLN 870
|
....*..
gi 528480690 656 DQLEDSE 662
Cdd:COG4913 871 DSLKRIP 877
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
340-873 |
1.98e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.68 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 340 ALQEALKEKQQHIEQLLAER---DLERAEVAKA--------TSHICEVEKELAALKARHlqyaTETESNLQQVRAMLAST 408
Cdd:pfam12128 312 AADAAVAKDRSELEALEDQHgafLDADIETAAAdqeqlpswQSELENLEERLKALTGKH----QDVTAKYNRRRSKIKEQ 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 409 QKDKMELANQLEEEKRKVEDLQFRVEEesitkGDLEQTTveektrvMQLEEELALRKAEVEELQVRFQrgSSGSATDAED 488
Cdd:pfam12128 388 NNRDIAGIKDKLAKIREARDRQLAVAE-----DDLQALE-------SELREQLEAGKLEFNEEEYRLK--SRLGELKLRL 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 489 GEPGITSETLVLREQLLSVGRERREESSQLReryeASLSTSQKEIERLKAITERQGQEISDLKQRLQQ---ATRENMEMM 565
Cdd:pfam12128 454 NQATATPELLLQLENFDERIERAREEQEAAN----AEVERLQSELRQARKRRDQASEALRQASRRLEErqsALDELELQL 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 566 DS---------------WKAKLDALVGDHQRALEELKASLTTDCGSGEINGGEGEGSLPEMRAAlEGLKMEHQLELENLK 630
Cdd:pfam12128 530 FPqagtllhflrkeapdWEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVP-EWAASEEELRERLDK 608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 631 AKHEIDAA------------VMAKEREDLRSRLQELRDQLEDSEENW-KIQVETKSNQHTLEiKEVSEKLQKAELRIVDL 697
Cdd:pfam12128 609 AEEALQSArekqaaaeeqlvQANGELEKASREETFARTALKNARLDLrRLFDEKQSEKDKKN-KALAERKDSANERLNSL 687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 698 DKSQEEREKVNQLLKEQL--MLAEKKMVDYEALQKAEAQSRAEILSL-QEKLRVTENRLQAVEADHTTQDVNMIENNDNS 774
Cdd:pfam12128 688 EAQLKQLDKKHQAWLEEQkeQKREARTEKQAYWQVVEGALDAQLALLkAAIAARRSGAKAELKALETWYKRDLASLGVDP 767
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 775 DEKVKLKQ---NVEETLEKLTKREKEV--------STLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETM 843
Cdd:pfam12128 768 DVIAKLKReirTLERKIERIAVRRQEVlryfdwyqETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEME 847
|
570 580 590
....*....|....*....|....*....|...
gi 528480690 844 TKKSHDasgQLVNISQELLKKE---RSLNELRV 873
Cdd:pfam12128 848 RKASEK---QQVRLSENLRGLRcemSKLATLKE 877
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
342-574 |
2.00e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 2.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 342 QEALKEKQQHIEqllAERDLERAEVAKATSHICEVEKElAALKARHLQYATETESNLQQVRAMLASTQKDKMELANQLEE 421
Cdd:PTZ00121 1610 EEAKKAEEAKIK---AEELKKAEEEKKKVEQLKKKEAE-EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE 1685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 422 EKRKVEDLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELALRKAEVEELQvRFQRGSSGSATDA--EDGEpgitsetlv 499
Cdd:PTZ00121 1686 DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAK-KEAEEDKKKAEEAkkDEEE--------- 1755
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 528480690 500 lREQLLSVGRERREESSQLRERYEASLSTS-QKEIERLKAITERQGQEISDLKQRLQQATRENMEMMDSWKAKLDA 574
Cdd:PTZ00121 1756 -KKKIAHLKKEEEKKAEEIRKEKEAVIEEElDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDS 1830
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
323-844 |
2.40e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 48.63 E-value: 2.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 323 LLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERA-------EVAKATSHICEVEKELAALKARHLQYATEtE 395
Cdd:pfam01576 76 ILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAarqklqlEKVTTEAKIKKLEEDILLLEDQNSKLSKE-R 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 396 SNLQQVRAMLASTQKDKMELANQLEEEKRKVE----DLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELALRKAEVEEL 471
Cdd:pfam01576 155 KLLEERISEFTSNLAEEEEKAKSLSKLKNKHEamisDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAEL 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 472 QVRFQRGSSGSATDAEDGEPGITSETLVLR-----EQLLSVGRERREESSQLRERYEASLSTSQKEIERLKAITE----- 541
Cdd:pfam01576 235 RAQLAKKEEELQAALARLEEETAQKNNALKkirelEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEdtldt 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 542 ---------RQGQEISDLKQRLQQATRenmemmdSWKAKLDALVGDHQRALEELKASLttdcgsgeINGGEGEGSLPEMR 612
Cdd:pfam01576 315 taaqqelrsKREQEVTELKKALEEETR-------SHEAQLQEMRQKHTQALEELTEQL--------EQAKRNKANLEKAK 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 613 AALEGLKMEHQLELENL-KAKHEIDaavmaKEREDLRSRLQELRDQLEDSEEnwkiqvetksnqhtlEIKEVSEKLQKAE 691
Cdd:pfam01576 380 QALESENAELQAELRTLqQAKQDSE-----HKRKKLEGQLQELQARLSESER---------------QRAELAEKLSKLQ 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 692 LRIVDLDKSQEEREKVNQLLKEQLMLAEKKMVDYEALQKAEAQSRaeiLSLQEKLRVTEnrlqaveadhttqdvnmienn 771
Cdd:pfam01576 440 SELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQK---LNLSTRLRQLE--------------------- 495
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 772 dnsDEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQ-------ITALEE------------KVRLGEKTA--DGLI 830
Cdd:pfam01576 496 ---DERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKleedagtLEALEEgkkrlqrelealTQQLEEKAAayDKLE 572
|
570
....*....|....
gi 528480690 831 KEKTRLEAELETMT 844
Cdd:pfam01576 573 KTKNRLQQELDDLL 586
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
364-589 |
3.30e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 3.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 364 AEVAKATSHICEVEKELAALKARhlqyatetesnLQQVRAMLASTQKDKMELANQLEEEKRKVEDLQFRVEEESITKGDL 443
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQE-----------IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 444 EQTTVEEKTRVMQLEEELALRKAEVEELQVRFQRGSSGSATD----AEDGepgitSETLVLREQLLSVGRERREESSQLR 519
Cdd:COG4942 82 EAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLAlllsPEDF-----LDAVRRLQYLKYLAPARREQAEELR 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 520 ERYEAsLSTSQKEIERLKAITERQGQEISDLKQRLQQATRENMEMMDSWKAKLDALvgdhQRALEELKAS 589
Cdd:COG4942 157 ADLAE-LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAEL----AAELAELQQE 221
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
388-916 |
3.64e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.12 E-value: 3.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 388 LQYATETESNLQQVRAMLASTQkdkmelaNQLEEEKRKVEDLQFRVEEESITKGDLEqttvEEKTRVMQLEEEL-ALRKA 466
Cdd:TIGR00606 209 LKYLKQYKEKACEIRDQITSKE-------AQLESSREIVKSYENELDPLKNRLKEIE----HNLSKIMKLDNEIkALKSR 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 467 EVE------ELQVRFQRGSSGSATDAEDGEPGITSETLVLREQLLSVGRE------RREESSQLRERYEASLSTSQKEIE 534
Cdd:TIGR00606 278 KKQmekdnsELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQREleklnkERRLLNQEKTELLVEQGRLQLQAD 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 535 RLKAITERQGQEISDLKQRLQQATRENMEMMDSWKAKLDALVgdhQRALEELKASLTTDCGSGEINGGEGEGSLPEMRAA 614
Cdd:TIGR00606 358 RHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLV---IERQEDEAKTAAQLCADLQSKERLKQEQADEIRDE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 615 LEGLKMEHQLELENLKAKHEIDAAVMA--KEREDLRSRLQELRDQLEDSEENWKiQVETKSNQHTLEIKEVSEKLQKAEL 692
Cdd:TIGR00606 435 KKGLGRTIELKKEILEKKQEELKFVIKelQQLEGSSDRILELDQELRKAERELS-KAEKNSLTETLKKEVKSLQNEKADL 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 693 --RIVDLDKSQEEREKVNQLLKEQLMLAEKKMVDYEALQKAEAQSRAEILSL-----------------QEKLRVTENRL 753
Cdd:TIGR00606 514 drKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLlgyfpnkkqledwlhskSKEINQTRDRL 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 754 QAV--EADHTTQDVNMIENNDNSDEKVKLK-----------QNVEETLEKLTKR----EKEVSTLTTQVDALKTQITALE 816
Cdd:TIGR00606 594 AKLnkELASLEQNKNHINNELESKEEQLSSyedklfdvcgsQDEESDLERLKEEieksSKQRAMLAGATAVYSQFITQLT 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 817 EKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELRVLLlesPRHSAGVDRdlsREVHRA 896
Cdd:TIGR00606 674 DENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLA---PGRQSIIDL---KEKEIP 747
|
570 580
....*....|....*....|
gi 528480690 897 EWRMKEQKLQDDIKTLREKL 916
Cdd:TIGR00606 748 ELRNKLQKVNRDIQRLKNDI 767
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
332-797 |
4.35e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 4.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 332 ARKISGTTALQEALK--EKQQHIEQLLAERDLERAEVAKATshicEVEKELAALKARHLQYATETESNLQQVRAMLASTQ 409
Cdd:PTZ00121 1515 AKKAEEAKKADEAKKaeEAKKADEAKKAEEKKKADELKKAE----ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE 1590
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 410 KDKMELANQLEEEKRKVEDLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELALRKAEVEELQVRFQRGSSGSATDAEDG 489
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 490 EpgitsETLVLREQLLSVGRERREESSQLRERYEaslstSQKEIERLKAITERQGQEISDLKQrlqqATRENMEMMDSWK 569
Cdd:PTZ00121 1671 E-----EDKKKAEEAKKAEEDEKKAAEALKKEAE-----EAKKAEELKKKEAEEKKKAEELKK----AEEENKIKAEEAK 1736
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 570 AKLDalvgDHQRALEELKASlttdcgsgeinggegegslPEMRAALEGLKMEHQLELENLKAKHEidAAVMAKEREDLRS 649
Cdd:PTZ00121 1737 KEAE----EDKKKAEEAKKD-------------------EEEKKKIAHLKKEEEKKAEEIRKEKE--AVIEEELDEEDEK 1791
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 650 RLQELRDQLEDSEENWKIQVEtKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLAEKKMVDYEALQ 729
Cdd:PTZ00121 1792 RRMEVDKKIKDIFDNFANIIE-GGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADF 1870
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 528480690 730 KAEAQSRA----EILSLQEKLRVTENRLQAVEADHTTQDVNMIENNDNSDEKVKLKQNVEETLEKLTKREKE 797
Cdd:PTZ00121 1871 NKEKDLKEddeeEIEEADEIEKIDKDDIEREIPNNNMAGKNNDIIDDKLDKDEYIKRDAEETREEIIKISKK 1942
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
343-763 |
4.61e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 4.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 343 EALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARHLQYATETESNLQQVRAMLASTQKDKMELANQLEEE 422
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 423 KRKVEDLQFRVEEESitkgdleqttveektrvmQLEEELALRKAEVEELQVRFQRGSSGSATDAEDG----EPGITSETL 498
Cdd:COG4717 229 LEQLENELEAAALEE------------------RLKEARLLLLIAAALLALLGLGGSLLSLILTIAGvlflVLGLLALLF 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 499 VLREQLLSVGRERREESSQLRERYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATRENMEMMDswkAKLDALVGD 578
Cdd:COG4717 291 LLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE---LEEELQLEE 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 579 HQRALEELKASLTTDCGSGEINGGEGEGSLPEMRAALEGLkmEHQLELENLKAKHEIDAAvmakEREDLRSRLQELRDQL 658
Cdd:COG4717 368 LEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEEL--EEQLEELLGELEELLEAL----DEEELEEELEELEEEL 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 659 EDSEENWK-IQVETKSNQHTLEIKEVSEKLQKAELRIvdldksQEEREKVNQLLKE--QLMLAEKKMvdYEALQKAEAQS 735
Cdd:COG4717 442 EELEEELEeLREELAELEAELEQLEEDGELAELLQEL------EELKAELRELAEEwaALKLALELL--EEAREEYREER 513
|
410 420 430
....*....|....*....|....*....|
gi 528480690 736 RAEILSLQEKL--RVTENRLQAVEADHTTQ 763
Cdd:COG4717 514 LPPVLERASEYfsRLTDGRYRLIRIDEDLS 543
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
726-975 |
4.82e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 4.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 726 EALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTqdVNMIENNDNSDEKVKLKQ----NVEETLEKLTKREKEVSTL 801
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREA--LQRLAEYSWDEIDVASAEreiaELEAELERLDASSDDLAAL 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 802 TTQVDALKTQITALEEKVrlgektaDGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELRVLLLESPRH 881
Cdd:COG4913 691 EEQLEELEAELEELEEEL-------DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAV 763
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 882 SAGVDRDLSREVhraewrmkeQKLQDDIKTLREKLLLLGRERLSPDHRRYSMMDPSASD-TEVARLRQRLLNT-----ED 955
Cdd:COG4913 764 ERELRENLEERI---------DALRARLNRAEEELERAMRAFNREWPAETADLDADLESlPEYLALLDRLEEDglpeyEE 834
|
250 260
....*....|....*....|..
gi 528480690 956 ALRNALEHN--QHVDQLVQAMR 975
Cdd:COG4913 835 RFKELLNENsiEFVADLLSKLR 856
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
348-709 |
5.47e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.26 E-value: 5.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 348 KQQHIEQLLAERDLERAEVAKATSHICEVEKELAALK---ARHLQYATETESN---------LQQVRAMLASTQKDKMEL 415
Cdd:PRK04863 784 REKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSrfiGSHLAVAFEADPEaelrqlnrrRVELERALADHESQEQQQ 863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 416 ANQLEEEKRKVEDLQFRVEEESItkgdLEQTTVEEktRVMQLEEELAlrKAEVEELQVRfQRGSsgsatdaedgepgits 495
Cdd:PRK04863 864 RSQLEQAKEGLSALNRLLPRLNL----LADETLAD--RVEEIREQLD--EAEEAKRFVQ-QHGN---------------- 918
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 496 eTLVLREQLLSVGRERREESSQLRERYEASLSTSQKEIERLKAITErqgqeisdLKQRL--------QQATRENMEMMDS 567
Cdd:PRK04863 919 -ALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTE--------VVQRRahfsyedaAEMLAKNSDLNEK 989
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 568 WKAKLDALVGDHQRALEELKASlttdcgsgeinggegEGSLPEMRAALEGLKMEHQLELENLK-AKHEIDA---AVMAKE 643
Cdd:PRK04863 990 LRQRLEQAEQERTRAREQLRQA---------------QAQLAQYNQVLASLKSSYDAKRQMLQeLKQELQDlgvPADSGA 1054
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 528480690 644 REDLRSRLQELRDQLEDSEENwKIQVETKSNQHTLEIKEVSEKLQKAElrivdlDKSQEEREKVNQ 709
Cdd:PRK04863 1055 EERARARRDELHARLSANRSR-RNQLEKQLTFCEAEMDNLTKKLRKLE------RDYHEMREQVVN 1113
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
342-559 |
7.68e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 7.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 342 QEALKEKQQHIEQLLAERdleRAEVAKAtshicevEKELAALKARH--LQYATETESNLQQVRamlastqkdkmELANQL 419
Cdd:COG3206 170 REEARKALEFLEEQLPEL---RKELEEA-------EAALEEFRQKNglVDLSEEAKLLLQQLS-----------ELESQL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 420 EEEKRKVEDLQFRVE--EESITKGDLEQTTVEEKTRVMQLEEELALRKAEVEELQVRFQrgssgsatdaeDGEPGITSet 497
Cdd:COG3206 229 AEARAELAEAEARLAalRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYT-----------PNHPDVIA-- 295
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 528480690 498 lvLREQLLSVGRERREESSQLRERYEASLSTSQKEIERLKaiterqgQEISDLKQRLQQATR 559
Cdd:COG3206 296 --LRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQ-------AQLAQLEARLAELPE 348
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
612-846 |
8.51e-05 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 45.96 E-value: 8.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 612 RAALEGLKMEHQLELENLKAKHEIDAAVMA--KEREDLRSRLQELRDQLEdseenwkiQVETKSNQHTLEIKEVSEKLQK 689
Cdd:pfam15905 55 KVKSLELKKKSQKNLKESKDQKELEKEIRAlvQERGEQDKRLQALEEELE--------KVEAKLNAAVREKTSLSASVAS 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 690 AELRIVDLDK---------SQEEREKVNQLLKEQLMLAEKKM---------------VDYEALQKAEAQSRAEILSLQEK 745
Cdd:pfam15905 127 LEKQLLELTRvnellkakfSEDGTQKKMSSLSMELMKLRNKLeakmkevmakqegmeGKLQVTQKNLEHSKGKVAQLEEK 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 746 LRVTEnRLQAVEADHTTQDVNMIENNDNSDEKV-KLKQNVEETLEKLTKREKEVSTLTTQVDA----LKTQITALEEKVR 820
Cdd:pfam15905 207 LVSTE-KEKIEEKSETEKLLEYITELSCVSEQVeKYKLDIAQLEELLKEKNDEIESLKQSLEEkeqeLSKQIKDLNEKCK 285
|
250 260 270
....*....|....*....|....*....|
gi 528480690 821 LGEKTADGLIKE----KTRLEAELETMTKK 846
Cdd:pfam15905 286 LLESEKEELLREyeekEQTLNAELEELKEK 315
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
396-916 |
8.70e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.43 E-value: 8.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 396 SNLQQVRAMLASTQKDKMELANQLEEEKRKVEDLQFRVEEESITKGDLEQTTV---EEKTRVMQLEEELALRKAEVEELQ 472
Cdd:PRK01156 183 SNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNnlkSALNELSSLEDMKNRYESEIKTAE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 473 VRFQrgssgSATDAEDGEPGITSETLVLREQLLSVGRERREESSQLR---ERYEASLSTSQKEIERLKAITERQGQEISD 549
Cdd:PRK01156 263 SDLS-----MELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKndiENKKQILSNIDAEINKYHAIIKKLSVLQKD 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 550 LKQRLQQATRenmemMDSWKAKLDALVGDHQ------RALEELKASLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEHQ 623
Cdd:PRK01156 338 YNDYIKKKSR-----YDDLNNQILELEGYEMdynsylKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELN 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 624 lELENLKAKHEIDAAVMAKEREDLRSRLQELRDQLEDSEENWKIQV------ETKSNQ----HTLEIKEVSEKLQKAELR 693
Cdd:PRK01156 413 -EINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVcgttlgEEKSNHiinhYNEKKSRLEEKIREIEIE 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 694 IVDLDksqeerEKVNQLLKEQLMLAEKKMVDYEALQKAEAQSRAEIlslqEKLRVTENRLQAVEADHttqdvNMIENNDN 773
Cdd:PRK01156 492 VKDID------EKIVDLKKRKEYLESEEINKSINEYNKIESARADL----EDIKIKINELKDKHDKY-----EEIKNRYK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 774 SDEKVKLKQNVEETLEKLTKREK-EVSTLTTQVDALKTQITALEEkvRLGEktadgLIKEKTRLEAELETMTKKSHDASG 852
Cdd:PRK01156 557 SLKLEDLDSKRTSWLNALAVISLiDIETNRSRSNEIKKQLNDLES--RLQE-----IEIGFPDDKSYIDKSIREIENEAN 629
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 528480690 853 QLVNISQELLKKERSLNELRVLLLESPRHSAGVDrdlSREVHRAEWRMKEQKLQDDIKTLREKL 916
Cdd:PRK01156 630 NLNNKYNEIQENKILIEKLRGKIDNYKKQIAEID---SIIPDLKEITSRINDIEDNLKKSRKAL 690
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
677-914 |
8.70e-05 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 46.67 E-value: 8.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 677 TLEIKEVSEKLQKAEL---RIVDLDKSQEEREKVNQLLKEQLMLAEKKMVDYEALQKAEAQSRAEILSLQEKLRVTENRL 753
Cdd:pfam07111 52 SLELEGSQALSQQAELisrQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 754 QaveadhttqdvNMIENNDNSDEKVKLKQnvEETLEKLTK-REKEVSTLTTQVDALKTQITALEEKvRLGEktadglIKE 832
Cdd:pfam07111 132 K-----------NLEEGSQRELEEIQRLH--QEQLSSLTQaHEEALSSLTSKAEGLEKSLNSLETK-RAGE------AKQ 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 833 KTRLEAELETMtkkshdaSGQLVNISQELlkkerslnELRVLLLESPRHSAGvdRDLSREVHRAEWRMKEQKLQDDIKTL 912
Cdd:pfam07111 192 LAEAQKEAELL-------RKQLSKTQEEL--------EAQVTLVESLRKYVG--EQVPPEVHSQTWELERQELLDTMQHL 254
|
..
gi 528480690 913 RE 914
Cdd:pfam07111 255 QE 256
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
510-925 |
9.92e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 46.35 E-value: 9.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 510 ERREESSQLRERYEASLSTSQKEIERLKAITERQGQEISdlkqrLQQATRENMEM-MDSWKAKLDALVGDHQRALEELKA 588
Cdd:pfam10174 95 QDFTTSPVDGEDKFSTPELTEENFRRLQSEHERQAKELF-----LLRKTLEEMELrIETQKQTLGARDESIKKLLEMLQS 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 589 SLTTDCGSGEINGGEGEGSLPEMRAA-LEGLKmeHQLELENLKAkheidaavmakeREDLRSRLQELRDQledseenwki 667
Cdd:pfam10174 170 KGLPKKSGEEDWERTRRIAEAEMQLGhLEVLL--DQKEKENIHL------------REELHRRNQLQPDP---------- 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 668 qVETKSNQHTLEIKEVseklqkaelRIVDLDKSQEEREKVNQLLKEQLMLA----EKKMVDYEALQKAEAQSRAEILSLQ 743
Cdd:pfam10174 226 -AKTKALQTVIEMKDT---------KISSLERNIRDLEDEVQMLKTNGLLHtedrEEEIKQMEVYKSHSKFMKNKIDQLK 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 744 EKLRVTENRLQAVEADHTTQdvnmieNNDNSDEKvklkQNVEETLEKLTKREKEVSTLTTQVDALKTQitaLEEKVRLGE 823
Cdd:pfam10174 296 QELSKKESELLALQTKLETL------TNQNSDCK----QHIEVLKESLTAKEQRAAILQTEVDALRLR---LEEKESFLN 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 824 KTADGLI---KEKTRLEAELETMT-------KKSHDASGQLVNISQELLKKERSLNELRVLLLESPRHSAGVDRDLS--- 890
Cdd:pfam10174 363 KKTKQLQdltEEKSTLAGEIRDLKdmldvkeRKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTtle 442
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 528480690 891 ---REVHRAEWRMKEQKLQDD-------------IKTLREKLLLLGRERLS 925
Cdd:pfam10174 443 ealSEKERIIERLKEQREREDrerleeleslkkeNKDLKEKVSALQPELTE 493
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
613-839 |
1.02e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 613 AALEGLKMEHQLELENLKAkhEIDAAvmAKEREDLRSRLQELRDQLEDSEENwKIQVETKSNQHTLEIKEVSEKLQKAEL 692
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQ--EIAEL--EKELAALKKEEKALLKQLAALERR-IAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 693 RIVDLDKSQEE-REKVNQLLKEQLMLAEKKMVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDVNMIENN 771
Cdd:COG4942 91 EIAELRAELEAqKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 528480690 772 DNSDEKVKLKQNVEETLEKLTK----REKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAE 839
Cdd:COG4942 171 AERAELEALLAELEEERAALEAlkaeRQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
643-876 |
1.77e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 643 EREDLRSRLQELRDQLEDSEENWKIQVETKSNQHTLE-IKEVSEKLQKAELRIVDLDksqeerekvnqllkeqlmlAEKK 721
Cdd:COG4913 219 EEPDTFEAADALVEHFDDLERAHEALEDAREQIELLEpIRELAERYAAARERLAELE-------------------YLRA 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 722 MVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDVNMIE-----NNDNSDEKVKLKQNVEETLEKLTKREK 796
Cdd:COG4913 280 ALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDEleaqiRGNGGDRLEQLEREIERLERELEERER 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 797 EVSTLTTQVDALKTQIT----ALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQEL--LKKERSLNE 870
Cdd:COG4913 360 RRARLEALLAALGLPLPasaeEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIasLERRKSNIP 439
|
....*.
gi 528480690 871 LRVLLL 876
Cdd:COG4913 440 ARLLAL 445
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
352-962 |
1.94e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 1.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 352 IEQLLAERDLERAEVAKATSHICEVEKELAAL---KARHLQYaTETESNLQQVRAMLASTQKDKME-----LANQLEEEK 423
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLrreREKAERY-QALLKEKREYEGYELLKEKEALErqkeaIERQLASLE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 424 RKVEDLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELALR-KAEVEELQVRFQRgssgsatdaedgepgiTSETLVLRE 502
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvKEKIGELEAEIAS----------------LERSIAEKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 503 QLLSVGRERREESSQLRERYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATRENMEMMDSWKAKLDALVgDHQRA 582
Cdd:TIGR02169 315 RELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK-DYREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 583 LEELKA---SLTTDCGSGEINGGEGEGSLPEMRAALEGLKmEHQLELENlkAKHEIDAAVMAKEREdlrsrLQELRDQLE 659
Cdd:TIGR02169 394 LEKLKReinELKRELDRLQEELQRLSEELADLNAAIAGIE-AKINELEE--EKEDKALEIKKQEWK-----LEQLAADLS 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 660 DSEENwKIQVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLK-----------------EQLMLA---- 718
Cdd:TIGR02169 466 KYEQE-LYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKasiqgvhgtvaqlgsvgERYATAieva 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 719 ----------EKKMVDYEALQ--KAEAQSRAEILSLQeKLRVTENRLQAV-EADHTTQDVNMIENNDNSDEKVK------ 779
Cdd:TIGR02169 545 agnrlnnvvvEDDAVAKEAIEllKRRKAGRATFLPLN-KMRDERRDLSILsEDGVIGFAVDLVEFDPKYEPAFKyvfgdt 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 780 -LKQNVEETLEKLTKreKEVSTLTTQVDALKTQITAleekvrlGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNIS 858
Cdd:TIGR02169 624 lVVEDIEAARRLMGK--YRMVTLEGELFEKSGAMTG-------GSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQ 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 859 QELLKKERSLNELRVLLLESPRHSagvdRDLSREVHRAEwrMKEQKLQDDIKTLREKLLLLGRERLSPDhrrySMMDpsA 938
Cdd:TIGR02169 695 SELRRIENRLDELSQELSDASRKI----GEIEKEIEQLE--QEEEKLKERLEELEEDLSSLEQEIENVK----SELK--E 762
|
650 660
....*....|....*....|....
gi 528480690 939 SDTEVARLRQRLLNTEDALrNALE 962
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEAL-NDLE 785
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
709-872 |
2.36e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 709 QLLKEQLMLAEKKMVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEAdhttqdvnMIENNDNSDEKVKLKQNVEET- 787
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK--------LLQLLPLYQELEALEAELAELp 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 788 --LEKLTKREKEVSTLTTQVDALKTQITALEEKVrlgektADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKE 865
Cdd:COG4717 146 erLEELEERLEELRELEEELEELEAELAELQEEL------EELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQ 219
|
....*..
gi 528480690 866 RSLNELR 872
Cdd:COG4717 220 EELEELE 226
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
642-830 |
2.65e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 642 KEREDLRSRLQELRDQLEDSEENWKIQVETKSNQHTLE--IKEVSEKLQKAELRIVDLDKSQEEREKVNQL--LKEQLML 717
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEaeLEELREELEKLEKLLQLLPLYQELEALEAELaeLPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 718 AEKKMVDYEALQKaeaqsraEILSLQEKLRVTENRLQAVEADHTTQDVNMIEnnDNSDEKVKLKQNVEETLEKLTKREKE 797
Cdd:COG4717 151 LEERLEELRELEE-------ELEELEAELAELQEELEELLEQLSLATEEELQ--DLAEELEELQQRLAELEEELEEAQEE 221
|
170 180 190
....*....|....*....|....*....|...
gi 528480690 798 VSTLTTQVDALKTQITALEEKVRLGEKTADGLI 830
Cdd:COG4717 222 LEELEEELEQLENELEAAALEERLKEARLLLLI 254
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
625-819 |
3.38e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 3.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 625 ELENLKAKHEIDAAVMAKEREDLRSRLQELRDQLEDseenwkiqVETKSNQHTLEIKEVSEKLQKAElrivdldksqeer 704
Cdd:COG1579 21 RLEHRLKELPAELAELEDELAALEARLEAAKTELED--------LEKEIKRLELEIEEVEARIKKYE------------- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 705 ekvnqllkEQLMLAeKKMVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHttqdvnmienndnSDEKVKLKQNV 784
Cdd:COG1579 80 --------EQLGNV-RNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEEL-------------AELEAELAELE 137
|
170 180 190
....*....|....*....|....*....|....*
gi 528480690 785 EETLEKLTKREKEVSTLTTQVDALKTQITALEEKV 819
Cdd:COG1579 138 AELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
612-820 |
7.40e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 7.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 612 RAALEGLKMEHQlELENLKAKHEIDAAVMAKEREDLRSRLQELRDQLEDSEEnwkiQVETKSNQHTLEikEVSEKLQKAE 691
Cdd:COG4913 609 RAKLAALEAELA-ELEEELAEAEERLEALEAELDALQERREALQRLAEYSWD----EIDVASAEREIA--ELEAELERLD 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 692 LRIVDLDKSQEEREKVNQLLKEqlmlAEKKmvdYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDVNMIENn 771
Cdd:COG4913 682 ASSDDLAALEEQLEELEAELEE----LEEE---LDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEE- 753
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 528480690 772 dnsdekvKLKQNVEETLEKLTKREkevstLTTQVDALKTQITALEEKVR 820
Cdd:COG4913 754 -------RFAAALGDAVERELREN-----LEERIDALRARLNRAEEELE 790
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
634-955 |
7.44e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.49 E-value: 7.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 634 EIDAAVMAKERED-------LRSRLQELRDQLEDSEENWKIQVETKSNQhTLEIKEVSEKLQ-----KAELRIVDLDKSQ 701
Cdd:PRK02224 191 QLKAQIEEKEEKDlherlngLESELAELDEEIERYEEQREQARETRDEA-DEVLEEHEERREeletlEAEIEDLRETIAE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 702 EEREK------VNQLLKEQLMLAEKK--MVDYEALQKAEAQSRAEILS-LQEKLRVTENRLQAVEAD---HTTQDVNMIE 769
Cdd:PRK02224 270 TEREReelaeeVRDLRERLEELEEERddLLAEAGLDDADAEAVEARREeLEDRDEELRDRLEECRVAaqaHNEEAESLRE 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 770 NNDNSDEKVKLKQNVEETLEKltkrekEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHD 849
Cdd:PRK02224 350 DADDLEERAEELREEAAELES------ELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 850 ASGQLVNISQELLKKERSLNELRVLLLESPRHSAGVDRDLSREVHRA-EWRMKEQKLQDDIKTLREKllllgRERLSPDH 928
Cdd:PRK02224 424 LREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIeEDRERVEELEAELEDLEEE-----VEEVEERL 498
|
330 340
....*....|....*....|....*..
gi 528480690 929 RRYSmmDPSASDTEVARLRQRLLNTED 955
Cdd:PRK02224 499 ERAE--DLVEAEDRIERLEERREDLEE 523
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
501-958 |
7.99e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 7.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 501 REQLLSVGRERREEssqLRERYeASLSTSQKEIERLKAITERQ-------------GQEISDLKQRLQQATREnmemmds 567
Cdd:PRK04863 784 REKRIEQLRAEREE---LAERY-ATLSFDVQKLQRLHQAFSRFigshlavafeadpEAELRQLNRRRVELERA------- 852
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 568 wkakLDALVGDHQRALEELKASlttdcgsgeinggegegslpemRAALEGLkmehqlelenlkAKHEIDAAVMAkeREDL 647
Cdd:PRK04863 853 ----LADHESQEQQQRSQLEQA----------------------KEGLSAL------------NRLLPRLNLLA--DETL 892
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 648 RSRLQELRDQLEDSEENwkiQVETKSNQHTLE-IKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLAEKKMVDYE 726
Cdd:PRK04863 893 ADRVEEIREQLDEAEEA---KRFVQQHGNALAqLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRA 969
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 727 ALQKAEAQSR-AEILSLQEKLRVtenRLQAVEADHTTQDVNMIENNDNSDEK----VKLKQNVEETLEKLTKREKEVSTL 801
Cdd:PRK04863 970 HFSYEDAAEMlAKNSDLNEKLRQ---RLEQAEQERTRAREQLRQAQAQLAQYnqvlASLKSSYDAKRQMLQELKQELQDL 1046
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 802 TTQVDAlktqitALEEKVRLGEKTADG-----------LIKEKTRLEAELETMTKK-------SHDASGQLVN---ISQE 860
Cdd:PRK04863 1047 GVPADS------GAEERARARRDELHArlsanrsrrnqLEKQLTFCEAEMDNLTKKlrklerdYHEMREQVVNakaGWCA 1120
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 861 LLKK------ERSLN--ELRVLLLESPRhsAGVDRDLSR---EVHRAEWRMKEQKLQDDIKTLREKLLL------LGRER 923
Cdd:PRK04863 1121 VLRLvkdngvERRLHrrELAYLSADELR--SMSDKALGAlrlAVADNEHLRDVLRLSEDPKRPERKVQFyiavyqHLRER 1198
|
490 500 510
....*....|....*....|....*....|....*....
gi 528480690 924 LSPDHRRYSmmDP----SASDTEVARLRQRLLNTEDALR 958
Cdd:PRK04863 1199 IRQDIIRTD--DPveaiEQMEIELSRLTEELTSREQKLA 1235
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
339-843 |
1.01e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 339 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKArHLQYATETESNLQQVRamlASTQKDKMELANQ 418
Cdd:pfam01576 260 NNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKT-ELEDTLDTTAAQQELR---SKREQEVTELKKA 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 419 LEEEKRKVE-DLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELALRKAEVEELQVRFqRGSSGSATDAEDGEPGITSET 497
Cdd:pfam01576 336 LEEETRSHEaQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAEL-RTLQQAKQDSEHKRKKLEGQL 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 498 LVLREQLLSVGRERREESSQLR------ERYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATRENMEmmdswkak 571
Cdd:pfam01576 415 QELQARLSESERQRAELAEKLSklqselESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLN-------- 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 572 ldalVGDHQRALEELKASLTTDCGSGEinggegegslpEMRAALEGLKMEHQLELENLKAKHEIDAAVMakeredlrsrl 651
Cdd:pfam01576 487 ----LSTRLRQLEDERNSLQEQLEEEE-----------EAKRNVERQLSTLQAQLSDMKKKLEEDAGTL----------- 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 652 qelrDQLEDSEENWKIQVETKSNQhtLEIKEVS-EKLQKAELRI--------VDLDksqEEREKVNQLLKEQ----LMLA 718
Cdd:pfam01576 541 ----EALEEGKKRLQRELEALTQQ--LEEKAAAyDKLEKTKNRLqqelddllVDLD---HQRQLVSNLEKKQkkfdQMLA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 719 EKKMVD---YEALQKAEAQSR---AEILSLQEKLRVTENRLQAVEADHTTQDVNMienndnsDEKVKLKQNVEETLEKLt 792
Cdd:pfam01576 612 EEKAISaryAEERDRAEAEARekeTRALSLARALEEALEAKEELERTNKQLRAEM-------EDLVSSKDDVGKNVHEL- 683
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 528480690 793 krEKEVSTLTTQVDALKTQITALEEKVRLGEKTadglikeKTRLEAELETM 843
Cdd:pfam01576 684 --ERSKRALEQQVEEMKTQLEELEDELQATEDA-------KLRLEVNMQAL 725
|
|
| TACC_C |
pfam05010 |
Transforming acidic coiled-coil-containing protein (TACC), C-terminal; This entry represents a ... |
530-711 |
1.23e-03 |
|
Transforming acidic coiled-coil-containing protein (TACC), C-terminal; This entry represents a C-terminal domain found in the the proteins TACC 1, 2 and 3 (TACC1-3). TACC1 is found concentrated in the centrosomes of eukaryotes which may play a conserved role in organizing centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1). TACC 3 from Xenopus laevis, also known as maskin, associates XMAP215 and promotes efficient microtubule elongation during mitosis. Maskin is also found to bind CPEB and elF-4E. Interestingly, the functional homolog (Alp7) in Schizosaccharomyces pombe (not included in this entry) has been shown to be required for organization of bipolar spindles.
Pssm-ID: 461517 [Multi-domain] Cd Length: 201 Bit Score: 41.20 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 530 QKEIERLKAITERQGQEISDLKQRLQQATRENMEM---MDSWKAKLDALVGDHQRALEELKASLttdcGSGEINGGEGEG 606
Cdd:pfam05010 7 DAALEKARNEIEEKELEINELKAKYEELRRENLEMrkiVAEFEKTIAQMIEEKQKQKELEHAEI----QKVLEEKDQALA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 607 SLPEMRAALEGL--KMEHQLE-LENLKAKHEidaaVMAKEREDLRSRLQelrdQLEDSEENWKIQVETKSNQHTLEIKEV 683
Cdd:pfam05010 83 DLNSVEKSFSDLfkRYEKQKEvISGYKKNEE----SLKKCAQDYLARIK----KEEQRYQALKAHAEEKLDQANEEIAQV 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 528480690 684 SEK-----------LQKAELRIVDLDKSQEEREKVNQLL 711
Cdd:pfam05010 155 RSKakaetaalqasLRKEQMKVQSLERQLEQKTKENEEL 193
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
342-820 |
1.42e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 342 QEALKEKQqhieqllAERDLERAEVAKATSHICEVEKELAALKARHLQYATETESNLQQVRAMLASTQKDKMELANQLEE 421
Cdd:PRK04863 246 LEAIRVTQ-------SDRDLFKHLITESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 422 EkrkvedlqfrVEEESITKGDLEQTtVEEKTRV---MQLEEELALRKAEVEELQVRfqrgssgsatdaedgepgitsetl 498
Cdd:PRK04863 319 L----------NEAESDLEQDYQAA-SDHLNLVqtaLRQQEKIERYQADLEELEER------------------------ 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 499 vLREQLlsvgrERREESSQLRERYEASLSTSQKEIERLKAiterqgqEISDLKQRLQ-QATRenmemmdswkakldALVG 577
Cdd:PRK04863 364 -LEEQN-----EVVEEADEQQEENEARAEAAEEEVDELKS-------QLADYQQALDvQQTR--------------AIQY 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 578 DH-QRALEELKASlttdCGSGEINGGEGEGSLPEMRAAleglkmEHQLELENLKAKHEIDAAVMAKER-EDLRSRLQELR 655
Cdd:PRK04863 417 QQaVQALERAKQL----CGLPDLTADNAEDWLEEFQAK------EQEATEELLSLEQKLSVAQAAHSQfEQAYQLVRKIA 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 656 DQLEDSE-ENWKIQVETKSNQHtleiKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLAEKKMVDYEALQKAEAQ 734
Cdd:PRK04863 487 GEVSRSEaWDVARELLRRLREQ----RHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 735 SRAEILSLQEKLR-------VTENRLQAVEAD-----------HTTQD-VNMIEnnDNSDEKVKLKQNVEETLEKLTKRE 795
Cdd:PRK04863 563 LEARLESLSESVSearerrmALRQQLEQLQARiqrlaarapawLAAQDaLARLR--EQSGEEFEDSQDVTEYMQQLLERE 640
|
490 500
....*....|....*....|....*
gi 528480690 796 KEvstLTTQVDALKTQITALEEKVR 820
Cdd:PRK04863 641 RE---LTVERDELAARKQALDEEIE 662
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
772-977 |
1.55e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 772 DNSDEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDAS 851
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 852 GQLVNISQELLKKERSlNELRVLLleSPRHSAGVDRDLSREVHRAEWRMKE-QKLQDDIKTLREKLLLLGRER------- 923
Cdd:COG4942 104 EELAELLRALYRLGRQ-PPLALLL--SPEDFLDAVRRLQYLKYLAPARREQaEELRADLAELAALRAELEAERaeleall 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 528480690 924 --LSPDHRRYSmMDPSASDTEVARLRQRLLNTEDALRNALEHNQHVDQLVQAMRTR 977
Cdd:COG4942 181 aeLEEERAALE-ALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
696-871 |
1.73e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 696 DLDKSQEEREKVNQLLKEQLMLAEKKMVDYEALQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDVNMIENNDNSD 775
Cdd:COG3883 24 ELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 776 --EKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQ 853
Cdd:COG3883 104 ylDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEAL 183
|
170
....*....|....*...
gi 528480690 854 LVNISQELLKKERSLNEL 871
Cdd:COG3883 184 LAQLSAEEAAAEAQLAEL 201
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
583-721 |
1.74e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 41.54 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 583 LEELKASLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEHQLELENLKAKHEIDAAVMAKEREDLRSRLQELRDQLEDSE 662
Cdd:smart00787 149 LDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLE 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528480690 663 EnwkiqVETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVN----QLLKEQLMLAEKK 721
Cdd:smart00787 229 E-----LEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTfkeiEKLKEQLKLLQSL 286
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
679-868 |
2.11e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 679 EIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLM---------------LAEKKMVDYEALQKAEAQSRAE----- 738
Cdd:pfam01576 13 ELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQaetelcaeaeemrarLAARKQELEEILHELESRLEEEeersq 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 739 ------------ILSLQEKLRVTENRLQAVEADHTT---------QDVNMIE--NNDNSDEKVKLKQNVEETLEKLTKRE 795
Cdd:pfam01576 93 qlqnekkkmqqhIQDLEEQLDEEEAARQKLQLEKVTteakikkleEDILLLEdqNSKLSKERKLLEERISEFTSNLAEEE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528480690 796 KEVSTLTTQVDALKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSL 868
Cdd:pfam01576 173 EKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEEL 245
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
642-907 |
2.34e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 642 KEREDLRSRLQELRDQLEDSEENWKIQVETKSNqhtlEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLAEKK 721
Cdd:TIGR00606 712 KSTESELKKKEKRRDEMLGLAPGRQSIIDLKEK----EIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVC 787
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 722 MVDYEALQKAEAQSRaeilSLQEKLRVTENRLQAVEADHTTQDVNMiENNDNSDEKVKLKQNVEETLEKLTKREKEVSTL 801
Cdd:TIGR00606 788 LTDVTIMERFQMELK----DVERKIAQQAAKLQGSDLDRTVQQVNQ-EKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 802 TTQVDALKTqitaleEKVRLGE--KTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELRVLLLESP 879
Cdd:TIGR00606 863 KSKTNELKS------EKLQIGTnlQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSN 936
|
250 260 270
....*....|....*....|....*....|
gi 528480690 880 RHSAGVDRDLSREVHRAEWRMK--EQKLQD 907
Cdd:TIGR00606 937 KKAQDKVNDIKEKVKNIHGYMKdiENKIQD 966
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
728-872 |
2.34e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 728 LQKAEAQSRAEILSLQEKLRVTENRLQAVEADHTTQDVNMIENNDNSDEKVKLKQNVEETLEKLTKrEKEVSTLTTQVDA 807
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRN-NKEYEALQKEIES 100
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 528480690 808 LKTQITALEEKVRLGEKTADGLIKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNELR 872
Cdd:COG1579 101 LKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAER 165
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
608-799 |
2.69e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 608 LPEMRAALEglkmEHQLELENLKAKHEI-----DAAVMAKEREDLRSRLQELRDQLEDSEENWKiQVETKSNQHTLEIKE 682
Cdd:COG3206 184 LPELRKELE----EAEAALEEFRQKNGLvdlseEAKLLLQQLSELESQLAEARAELAEAEARLA-ALRAQLGSGPDALPE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 683 VSEKLQKAELRIvDLDKSQEEREKVNQLLKE---QLMLAEKKMVDYEALQKAEAQSRaeILSLQEKLRVTENRLQAVEAD 759
Cdd:COG3206 259 LLQSPVIQQLRA-QLAELEAELAELSARYTPnhpDVIALRAQIAALRAQLQQEAQRI--LASLEAELEALQAREASLQAQ 335
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 528480690 760 HTTQDVNMIENNDNSDEKVKLKQNVE---ETLEKLTKREKEVS 799
Cdd:COG3206 336 LAQLEARLAELPELEAELRRLEREVEvarELYESLLQRLEEAR 378
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
409-849 |
5.84e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 40.59 E-value: 5.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 409 QKDKMELANQLEEEKRKVEDLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELALRK-AEVEEL---------QVRFQRg 478
Cdd:PRK04778 24 RKRNYKRIDELEERKQELENLPVNDELEKVKKLNLTGQSEEKFEEWRQKWDEIVTNSlPDIEEQlfeaeelndKFRFRK- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 479 SSGSATDAEDGEPGITSETLVLRE---QLLSVGRERREESSQLRERYE----------ASLSTSQKEIErlkaiterqgQ 545
Cdd:PRK04778 103 AKHEINEIESLLDLIEEDIEQILEelqELLESEEKNREEVEQLKDLYRelrksllanrFSFGPALDELE----------K 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 546 EISDLKQRLQQATRENMEmmdswkakldalvGDHQRA---LEELKASLTtdcgsgeinggEGEGSLPEMRAALEGLKMEH 622
Cdd:PRK04778 173 QLENLEEEFSQFVELTES-------------GDYVEAreiLDQLEEELA-----------ALEQIMEEIPELLKELQTEL 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 623 QLELENLKAKH-EIDAAVMAKEREDLRSRLQELRDQLEDSEENWKiqvetksnqhTLEIKEVSEKLQKAELRIVDL-DKS 700
Cdd:PRK04778 229 PDQLQELKAGYrELVEEGYHLDHLDIEKEIQDLKEQIDENLALLE----------ELDLDEAEEKNEEIQERIDQLyDIL 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 701 QEEREKVNQLLKEQlmlaeKKMVDYeaLQKAEAQSR---AEILSLQEKLRVTENRLQAVEAdhTTQDVNMIENndnsdek 777
Cdd:PRK04778 299 EREVKARKYVEKNS-----DTLPDF--LEHAKEQNKelkEEIDRVKQSYTLNESELESVRQ--LEKQLESLEK------- 362
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528480690 778 vklkqNVEETLEKLTKREKEVSTLTTQVDALKTQITALEEK-VRLGEKTAdGLIKEKTRLEAELETMTKKSHD 849
Cdd:PRK04778 363 -----QYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEqEKLSEMLQ-GLRKDELEAREKLERYRNKLHE 429
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
521-820 |
5.98e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.54 E-value: 5.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 521 RYEASLSTSQKEIERLKAITERQGQEISDLKQRLQQATRENMEMMDSWKAKldalvgdhqralEELKAslttdcgsgein 600
Cdd:pfam01576 2 RQEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAE------------TELCA------------ 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 601 ggegegSLPEMRAALEGLKMEHQLELENLKAK---HEIDAAVMAKEREDLRSRLQELRDQLEDSEE-NWKIQVETKSnqh 676
Cdd:pfam01576 58 ------EAEEMRARLAARKQELEEILHELESRleeEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAaRQKLQLEKVT--- 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 677 tleikeVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLAEKKMVDYE----ALQKAEAQSRAEILSLQEKLRVTENR 752
Cdd:pfam01576 129 ------TEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEekakSLSKLKNKHEAMISDLEERLKKEEKG 202
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 528480690 753 LQAVEADHTTQDVnmiENNDNSDEKVKLKQNVEETLEKLTKREKEVSTLTTQVDALKTQITALEEKVR 820
Cdd:pfam01576 203 RQELEKAKRKLEG---ESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIR 267
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
323-461 |
6.48e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.45 E-value: 6.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 323 LLTETSSRYARKISgttALQEALKEKQQHIEQLLAERD-LERAEVAKATSHICEVEKELAALKAR----HLQYATETE-- 395
Cdd:COG0542 394 LIDEAAARVRMEID---SKPEELDELERRLEQLEIEKEaLKKEQDEASFERLAELRDELAELEEElealKARWEAEKEli 470
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 528480690 396 SNLQQVRAMLASTQKDKMELANQLEEEKRKVEDLQFRVEEEsITKGD------------LEQTTVEEKTRVMQLEEEL 461
Cdd:COG0542 471 EEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLREE-VTEEDiaevvsrwtgipVGKLLEGEREKLLNLEEEL 547
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
670-871 |
6.55e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 6.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 670 ETKSNQHTLEIKEVSEKLQKAELRIVDLDKSQEEREKVNQLLKEQLMLAEKkmvdyealqkaeaqsraEILSLQEKLRVT 749
Cdd:TIGR04523 32 DTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQ-----------------QIKDLNDKLKKN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 750 ENRLQAVEADhttqdvnMIENNDNSDEKVKLKQNVEETLEKLTKREKEVSTLTTQVdalKTQITALEEKVRLGEKTADGL 829
Cdd:TIGR04523 95 KDKINKLNSD-------LSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKF---LTEIKKKEKELEKLNNKYNDL 164
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 528480690 830 IKEKTRLEAELETMTKKSHDASGQLVNISQELLKKERSLNEL 871
Cdd:TIGR04523 165 KKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNL 206
|
|
| ATP-synt_Fo_b |
cd06503 |
F-type ATP synthase, membrane subunit b; Membrane subunit b is a component of the Fo complex ... |
509-588 |
8.33e-03 |
|
F-type ATP synthase, membrane subunit b; Membrane subunit b is a component of the Fo complex of FoF1-ATP synthase. The F-type ATP synthases (FoF1-ATPase) consist of two structural domains: the F1 (assembly factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha (or A), beta (B), gamma (C), delta (D) and epsilon (E) subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons through the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Candidatus Methanoperedens.
Pssm-ID: 349951 [Multi-domain] Cd Length: 132 Bit Score: 37.42 E-value: 8.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 509 RERREESSQLRERYEASLSTSQKEIERLKAITERQGQEISDlkQRLQQATRENMEMMDSWKAKLDAlvgDHQRALEELKA 588
Cdd:cd06503 43 EKAKEEAEELLAEYEEKLAEARAEAQEIIEEARKEAEKIKE--EILAEAKEEAERILEQAKAEIEQ---EKEKALAELRK 117
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
502-757 |
8.92e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 8.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 502 EQLLSVGRERR-EESSQLRERYEASLSTSQKEIERLKAITERQGQEI--SDLKQRLQQATRENMEMMDSWKAKLDALVGD 578
Cdd:pfam17380 307 EKAREVERRRKlEEAEKARQAEMDRQAAIYAEQERMAMERERELERIrqEERKRELERIRQEEIAMEISRMRELERLQME 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 579 HQRALEELKASLTTDCGSGEINGGEGEGSLPEMRAALEGLKMEHQLELENLKAKHEIDAAVMAKEREDLRSRLQELRDQL 658
Cdd:pfam17380 387 RQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLR 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 659 EDSEENWKIQVETKsnqhtleiKEVSEKLQKAELRIVDLDKSQEER-------EKVNQLLKEQLMLAEKKMVDYEALQKA 731
Cdd:pfam17380 467 QQEEERKRKKLELE--------KEKRDRKRAEEQRRKILEKELEERkqamieeERKRKLLEKEMEERQKAIYEEERRREA 538
|
250 260
....*....|....*....|....*.
gi 528480690 732 EAQSRAEIlSLQEKLRVTENRLQAVE 757
Cdd:pfam17380 539 EEERRKQQ-EMEERRRIQEQMRKATE 563
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
621-873 |
9.20e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 39.89 E-value: 9.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 621 EHQLELENLKAKHEIDAAVMAKEREDLRSRLQELRDQLEDSEENWKIQVETKSNQ-HTLEIKEVSEKLQKAELRIVDLDK 699
Cdd:PLN02939 70 DENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQlSDFQLEDLVGMIQNAEKNILLLNQ 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 700 SQ-EEREKVNQLLKE------QLMLAEKKMVDYEALQK--AEAQSRAEILSLQ-EKLRVTENRLQAVEADH--------- 760
Cdd:PLN02939 150 ARlQALEDLEKILTEkealqgKINILEMRLSETDARIKlaAQEKIHVEILEEQlEKLRNELLIRGATEGLCvhslskeld 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 761 TTQDVNMIENNDNSDEKVKLkQNVEETLEKLTKREKEVSTLTTQVDALKTQITALEEKV-RLGEKTADGLIKEKTRLEAE 839
Cdd:PLN02939 230 VLKEENMLLKDDIQFLKAEL-IEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVsKLSPLQYDCWWEKVENLQDL 308
|
250 260 270
....*....|....*....|....*....|....*...
gi 528480690 840 LETMTKKSHDASgQLVNISQELLKK----ERSLNELRV 873
Cdd:PLN02939 309 LDRATNQVEKAA-LVLDQNQDLRDKvdklEASLKEANV 345
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
320-477 |
9.57e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 39.50 E-value: 9.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528480690 320 RTGLLTETSSRYARK-ISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKELAALKARhlqyATETESNL 398
Cdd:COG4372 21 KTGILIAALSEQLRKaLFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQ----LQAAQAEL 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528480690 399 QQVRAMLASTQKDKMELANQLEEEKRKVEDLQFRVEEESITKGDLEQTTVEEKTRVMQLEEELALRKAEVEELQVRFQR 477
Cdd:COG4372 97 AQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQA 175
|
|
| |
