|
Name |
Accession |
Description |
Interval |
E-value |
| Bromodomain |
cd04369 |
Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear ... |
137-193 |
2.48e-11 |
|
Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Pssm-ID: 99922 [Multi-domain] Cd Length: 99 Bit Score: 62.00 E-value: 2.48e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 530389740 137 MCLLQMEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMMLEQKL 193
Cdd:cd04369 43 MDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKLL 99
|
|
| BROMO |
smart00297 |
bromo domain; |
137-196 |
3.95e-07 |
|
bromo domain;
Pssm-ID: 197636 [Multi-domain] Cd Length: 107 Bit Score: 50.35 E-value: 3.95e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 137 MCLLQMEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMMLEQKLALL 196
Cdd:smart00297 48 MDLKTIKKKLENGKYSSVEEFVADFNLMFSNARTYNGPDSEVYKDAKKLEKFFEKKLREL 107
|
|
| COG5076 |
COG5076 |
Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin ... |
137-186 |
3.14e-05 |
|
Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription];
Pssm-ID: 227408 [Multi-domain] Cd Length: 371 Bit Score: 48.65 E-value: 3.14e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 530389740 137 MCLLQMEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQKLE 186
Cdd:COG5076 189 MDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELE 238
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
1112-1977 |
3.18e-05 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 49.38 E-value: 3.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1112 TTNINSSLASVFVNSPGTVSTQLPNTAFNKTITPLSNISSARPQPLSPVTSVSNLLTPSVKTSQSEAGKAKNAVSAATFS 1191
Cdd:COG3210 28 GSNTAGTSGLNILGSGGVGTAGGIASNAGTTASTSGGSGTAGGVGNTSASTGGIGAAAANTAGTLETGLTSNIGGGSVNG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1192 LPSASPTISSTGQPLSSTTTLNGSTNPGSSFNcFAQQTADSSEAKQELKTVCIRDSQSILVRTRGGNTGVVKVQTNPDQN 1271
Cdd:COG3210 108 SNSTGNGTLTTTAASATTGNNTGGTTTSSTNT-VTTLGGTTTGNTVLSTSGAGNNTNTNNSSSGTNIGNSIPTTGGSLNV 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1272 SPNTVSSSSVFTfapqlqAFLVPKSTTSSSAFSPVAGTTTTSSLSPFSQTPTSVSIPASFAPSMGKNLKLTLGHTTGSGD 1351
Cdd:COG3210 187 VAANPTGVTGVG------GALINATAGVLANAGGGTAGGVASANSTLTGGVVAAGTGAGVISTGGTDISSLSVAAGAGTG 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1352 LGHVIDKTSHMPSSPLKSSIcSSTLLPSTTSSSVSVISISAANFGQNNANIIHTPTKQQQVDYITKSYPVTRSEATAATN 1431
Cdd:COG3210 261 GAGGTGNAGNTTIGTTVTGT-NATGSNTAGASSGDTTTNGTSSVTGAGGTGVLGGGTAAGITTTNTVGGNGDGNNTTANS 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1432 GDVISGTpvqklmlvsapSILSSGNGTAINMTPALTSTGVSAQKLVFINAPVPSGTSTPTLVAESLKQTLPPplhkAYVK 1511
Cdd:COG3210 340 GAGLVSG-----------GTGGNNGTTGTGAGSGLTGTGNGGGLTTAGAGTVASTVGTATASTGNASSTTVL----GSGS 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1512 TPEQPQIVLIPSTVGTPIKINSSPAVSQIKDVKIGLNIGQAIVNTSGTVPAIPSINILQNVTpkGEDKSSKGYILPLSTS 1591
Cdd:COG3210 405 LATGNTGTTIAGNGGSANAGGFTTTGGVLGITGNGTVTGGTIGGLTGSGTTNGAGLSGNTDV--SGTGTVTNSAGNTTSA 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1592 GNSVPVSSNFVSQNITPVNESVVSSARAVNVLSVTGANLSLGSFPVTSASASAGAQPPVLVSGNDTSsrimpILSNRLCS 1671
Cdd:COG3210 483 TTLAGGGIGTVTTNATISNNAGGDANGIATGLTGITAGGGGGGNATSGGTGGDGTTLSGSGLTTTVS-----GGASGTTA 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1672 SSLGNTVAISTVKTGHLASSVLISTTQPVVSPKCLTSALQIPVTVALPTPATTSPKIINTVPHSAAVPGATRSVSISKRQ 1751
Cdd:COG3210 558 ASGSNTANTLGVLAATGGTSNATTAGNSTSATGGTGTNSGGTVLSIGTGSAGATGTITLGAGTSGAGANATGGGAGLTGS 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1752 SRTSLQFHSPGISTTVPTNVNTNKPQTELSSLSTSPGKITNTSNFASLPNQQALVKTPSYSSAPGGTTIHTASAPSNVTS 1831
Cdd:COG3210 638 AVGAALSGTGSGTTGTASANGSNTTGVNTAGGTGGGTTGTVTSGATGGTTGTTLNAATGGTLNNAGNTLTISTGSITVTG 717
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1832 LVGSQFSEPciQQKIVINTSTplaPGTQIMINgtRFIVPPQGLGAGSHVLLISTNPKYGAPLVLNSGQGIQS--TPIDNS 1909
Cdd:COG3210 718 QIGALANAN--GDTVTFGNLG---TGATLTLN--AGVTITSGNAGTLSIGLTANTTASGTTLTLANANGNTSagATLDNA 790
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1910 AQKIT--LASNNSLSGqplqhplrSPTKFINSFGNASSIPTVHTSPQLINTTAKVPVPPPVPTVSLTSVI 1977
Cdd:COG3210 791 GAEISidITADGTITA--------AGTTAINVTGSGGTITINTATTGLTGTGDTTSGAGGSNTTDTTTGT 852
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
1168-1527 |
3.87e-05 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 48.80 E-value: 3.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1168 TPSVKTSQSEAGKAKNAVSAATFSLPSASPtiSSTGQPLSSTTTLNGSTNPGSSFncfaqqTADSSEAKQELKTVCIRDS 1247
Cdd:pfam17823 90 HTPHGTDLSEPATREGAADGAASRALAAAA--SSSPSSAAQSLPAAIAALPSEAF------SAPRAAACRANASAAPRAA 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1248 QSILVRTRGGNTGVVKVQTNPDQNSPNTVSSSSVFTFAPQLQAFLVPKSTTSSSAfspvAGTTTTSSLSPFSQTPTSVSI 1327
Cdd:pfam17823 162 IAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAA----TATGHPAAGTALAAVGNSSPA 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1328 PASFAPSMGKNLKLTLGHTTGSGDLGHVIDKTSHMpSSPLkssicSSTLLPSTTSSSVSVISISAANFG-QNNANIIHTP 1406
Cdd:pfam17823 238 AGTVTAAVGTVTPAALATLAAAAGTVASAAGTINM-GDPH-----ARRLSPAKHMPSDTMARNPAAPMGaQAQGPIIQVS 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1407 TKQQQVDYITKSYPvtrseataatngdvisgTPVQKLMLVSAPSILSSGNGTAInmtpalTSTGVSAQKLVFINAPVPSG 1486
Cdd:pfam17823 312 TDQPVHNTAGEPTP-----------------SPSNTTLEPNTPKSVASTNLAVV------TTTKAQAKEPSASPVPVLHT 368
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 530389740 1487 TSTPTLVAESlKQTLPPPLhkAYVKTPEQPQIVLIPSTVGT 1527
Cdd:pfam17823 369 SMIPEVEATS-PTTQPSPL--LPTQGAAGPGILLAPEQVAT 406
|
|
| Bromodomain |
pfam00439 |
Bromodomain; Bromodomains are 110 amino acid long domains, that are found in many chromatin ... |
137-184 |
4.01e-05 |
|
Bromodomain; Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 425683 [Multi-domain] Cd Length: 84 Bit Score: 43.84 E-value: 4.01e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 530389740 137 MCLLQMEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQK 184
Cdd:pfam00439 37 MDLSTIKKKLENGEYKSLAEFLADVKLIFSNARTYNGPGSVIYKAAEK 84
|
|
| CCDC34 |
pfam13904 |
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several ... |
250-288 |
1.07e-04 |
|
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known.
Pssm-ID: 464032 [Multi-domain] Cd Length: 221 Bit Score: 45.85 E-value: 1.07e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 530389740 250 QVLRQEEQLRAKEEKRLREQERKEAEEASQKEIEEW-ERK 288
Cdd:pfam13904 65 QRQRQKELQAQKEEREKEEQEAELRKRLAKEKYQEWlQRK 104
|
|
| PHA03255 |
PHA03255 |
BDLF3; Provisional |
1096-1218 |
1.64e-03 |
|
BDLF3; Provisional
Pssm-ID: 165513 [Multi-domain] Cd Length: 234 Bit Score: 42.20 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1096 PLQQKGTEQHCSSFPQTTNINSSLASVFVNSPGTVSTQLPNTAFNKTITPLSNISSARPQPLSPVTSVSNLLTPSVKTSQ 1175
Cdd:PHA03255 53 PSTNQSTTLTTTSAPITTTAILSTNTTTVTSTGTTVTPVPTTSNASTINVTTKVTAQNITATEAGTGTSTGVTSNVTTRS 132
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 530389740 1176 SEAGKAKNAVSAATfslpSASPTISSTGQPLSSTTTLNGSTNP 1218
Cdd:PHA03255 133 SSTTSATTRITNAT----TLAPTLSSKGTSNATKTTAELPTVP 171
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Bromodomain |
cd04369 |
Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear ... |
137-193 |
2.48e-11 |
|
Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Pssm-ID: 99922 [Multi-domain] Cd Length: 99 Bit Score: 62.00 E-value: 2.48e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 530389740 137 MCLLQMEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMMLEQKL 193
Cdd:cd04369 43 MDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKLL 99
|
|
| Bromo_BDF1_2_I |
cd05500 |
Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast ... |
137-193 |
8.50e-08 |
|
Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 99932 Cd Length: 103 Bit Score: 51.93 E-value: 8.50e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 530389740 137 MCLLQMEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMMLEQKL 193
Cdd:cd05500 47 MDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNGPEHPVSQMGKRLQAAFEKHL 103
|
|
| Bromo_Brdt_II_like |
cd05498 |
Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET ... |
83-192 |
1.17e-07 |
|
Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 99930 Cd Length: 102 Bit Score: 51.51 E-value: 1.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 83 YRILGEFLQEKHRGLTAPFLQPLGGVATAEEEVAEGPrsggrggrafpQQPgqgMCLLQMEEKFASGQYGGITEFVADFR 162
Cdd:cd05498 6 SGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDII-----------KHP---MDLSTIKKKLDNREYADAQEFAADVR 71
|
90 100 110
....*....|....*....|....*....|
gi 530389740 163 LMLETCYRLHGVDHWISKQGQKLEMMLEQK 192
Cdd:cd05498 72 LMFSNCYKYNPPDHPVHAMARKLQDVFEDR 101
|
|
| Bromo_BDF1_2_II |
cd05499 |
Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast ... |
78-193 |
1.32e-07 |
|
Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 99931 Cd Length: 102 Bit Score: 51.52 E-value: 1.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 78 ELQQGYRILGEFLQEKHRGLTAPFLQPLGGVATaeeevaegprsggrggrafpQQPG------QGMCLLQMEEKFASGQY 151
Cdd:cd05499 1 ELKFCEEVLKELMKPKHSAYNWPFLDPVDPVAL--------------------NIPNyfsiikKPMDLGTISKKLQNGQY 60
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 530389740 152 GGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMMLEQKL 193
Cdd:cd05499 61 QSAKEFERDVRLIFKNCYTFNPEGTDVYMMGHQLEEVFNDKW 102
|
|
| BROMO |
smart00297 |
bromo domain; |
137-196 |
3.95e-07 |
|
bromo domain;
Pssm-ID: 197636 [Multi-domain] Cd Length: 107 Bit Score: 50.35 E-value: 3.95e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 137 MCLLQMEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMMLEQKLALL 196
Cdd:smart00297 48 MDLKTIKKKLENGKYSSVEEFVADFNLMFSNARTYNGPDSEVYKDAKKLEKFFEKKLREL 107
|
|
| COG5076 |
COG5076 |
Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin ... |
137-186 |
3.14e-05 |
|
Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription];
Pssm-ID: 227408 [Multi-domain] Cd Length: 371 Bit Score: 48.65 E-value: 3.14e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 530389740 137 MCLLQMEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQKLE 186
Cdd:COG5076 189 MDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELE 238
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
1112-1977 |
3.18e-05 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 49.38 E-value: 3.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1112 TTNINSSLASVFVNSPGTVSTQLPNTAFNKTITPLSNISSARPQPLSPVTSVSNLLTPSVKTSQSEAGKAKNAVSAATFS 1191
Cdd:COG3210 28 GSNTAGTSGLNILGSGGVGTAGGIASNAGTTASTSGGSGTAGGVGNTSASTGGIGAAAANTAGTLETGLTSNIGGGSVNG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1192 LPSASPTISSTGQPLSSTTTLNGSTNPGSSFNcFAQQTADSSEAKQELKTVCIRDSQSILVRTRGGNTGVVKVQTNPDQN 1271
Cdd:COG3210 108 SNSTGNGTLTTTAASATTGNNTGGTTTSSTNT-VTTLGGTTTGNTVLSTSGAGNNTNTNNSSSGTNIGNSIPTTGGSLNV 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1272 SPNTVSSSSVFTfapqlqAFLVPKSTTSSSAFSPVAGTTTTSSLSPFSQTPTSVSIPASFAPSMGKNLKLTLGHTTGSGD 1351
Cdd:COG3210 187 VAANPTGVTGVG------GALINATAGVLANAGGGTAGGVASANSTLTGGVVAAGTGAGVISTGGTDISSLSVAAGAGTG 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1352 LGHVIDKTSHMPSSPLKSSIcSSTLLPSTTSSSVSVISISAANFGQNNANIIHTPTKQQQVDYITKSYPVTRSEATAATN 1431
Cdd:COG3210 261 GAGGTGNAGNTTIGTTVTGT-NATGSNTAGASSGDTTTNGTSSVTGAGGTGVLGGGTAAGITTTNTVGGNGDGNNTTANS 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1432 GDVISGTpvqklmlvsapSILSSGNGTAINMTPALTSTGVSAQKLVFINAPVPSGTSTPTLVAESLKQTLPPplhkAYVK 1511
Cdd:COG3210 340 GAGLVSG-----------GTGGNNGTTGTGAGSGLTGTGNGGGLTTAGAGTVASTVGTATASTGNASSTTVL----GSGS 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1512 TPEQPQIVLIPSTVGTPIKINSSPAVSQIKDVKIGLNIGQAIVNTSGTVPAIPSINILQNVTpkGEDKSSKGYILPLSTS 1591
Cdd:COG3210 405 LATGNTGTTIAGNGGSANAGGFTTTGGVLGITGNGTVTGGTIGGLTGSGTTNGAGLSGNTDV--SGTGTVTNSAGNTTSA 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1592 GNSVPVSSNFVSQNITPVNESVVSSARAVNVLSVTGANLSLGSFPVTSASASAGAQPPVLVSGNDTSsrimpILSNRLCS 1671
Cdd:COG3210 483 TTLAGGGIGTVTTNATISNNAGGDANGIATGLTGITAGGGGGGNATSGGTGGDGTTLSGSGLTTTVS-----GGASGTTA 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1672 SSLGNTVAISTVKTGHLASSVLISTTQPVVSPKCLTSALQIPVTVALPTPATTSPKIINTVPHSAAVPGATRSVSISKRQ 1751
Cdd:COG3210 558 ASGSNTANTLGVLAATGGTSNATTAGNSTSATGGTGTNSGGTVLSIGTGSAGATGTITLGAGTSGAGANATGGGAGLTGS 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1752 SRTSLQFHSPGISTTVPTNVNTNKPQTELSSLSTSPGKITNTSNFASLPNQQALVKTPSYSSAPGGTTIHTASAPSNVTS 1831
Cdd:COG3210 638 AVGAALSGTGSGTTGTASANGSNTTGVNTAGGTGGGTTGTVTSGATGGTTGTTLNAATGGTLNNAGNTLTISTGSITVTG 717
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1832 LVGSQFSEPciQQKIVINTSTplaPGTQIMINgtRFIVPPQGLGAGSHVLLISTNPKYGAPLVLNSGQGIQS--TPIDNS 1909
Cdd:COG3210 718 QIGALANAN--GDTVTFGNLG---TGATLTLN--AGVTITSGNAGTLSIGLTANTTASGTTLTLANANGNTSagATLDNA 790
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1910 AQKIT--LASNNSLSGqplqhplrSPTKFINSFGNASSIPTVHTSPQLINTTAKVPVPPPVPTVSLTSVI 1977
Cdd:COG3210 791 GAEISidITADGTITA--------AGTTAINVTGSGGTITINTATTGLTGTGDTTSGAGGSNTTDTTTGT 852
|
|
| Bromo_gcn5_like |
cd05509 |
Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates ... |
137-193 |
3.26e-05 |
|
Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 99941 [Multi-domain] Cd Length: 101 Bit Score: 44.47 E-value: 3.26e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 530389740 137 MCLLQMEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMMLEQKL 193
Cdd:cd05509 42 MDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEYYKCANKLEKFFWKKL 98
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
1168-1527 |
3.87e-05 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 48.80 E-value: 3.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1168 TPSVKTSQSEAGKAKNAVSAATFSLPSASPtiSSTGQPLSSTTTLNGSTNPGSSFncfaqqTADSSEAKQELKTVCIRDS 1247
Cdd:pfam17823 90 HTPHGTDLSEPATREGAADGAASRALAAAA--SSSPSSAAQSLPAAIAALPSEAF------SAPRAAACRANASAAPRAA 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1248 QSILVRTRGGNTGVVKVQTNPDQNSPNTVSSSSVFTFAPQLQAFLVPKSTTSSSAfspvAGTTTTSSLSPFSQTPTSVSI 1327
Cdd:pfam17823 162 IAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAA----TATGHPAAGTALAAVGNSSPA 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1328 PASFAPSMGKNLKLTLGHTTGSGDLGHVIDKTSHMpSSPLkssicSSTLLPSTTSSSVSVISISAANFG-QNNANIIHTP 1406
Cdd:pfam17823 238 AGTVTAAVGTVTPAALATLAAAAGTVASAAGTINM-GDPH-----ARRLSPAKHMPSDTMARNPAAPMGaQAQGPIIQVS 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1407 TKQQQVDYITKSYPvtrseataatngdvisgTPVQKLMLVSAPSILSSGNGTAInmtpalTSTGVSAQKLVFINAPVPSG 1486
Cdd:pfam17823 312 TDQPVHNTAGEPTP-----------------SPSNTTLEPNTPKSVASTNLAVV------TTTKAQAKEPSASPVPVLHT 368
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 530389740 1487 TSTPTLVAESlKQTLPPPLhkAYVKTPEQPQIVLIPSTVGT 1527
Cdd:pfam17823 369 SMIPEVEATS-PTTQPSPL--LPTQGAAGPGILLAPEQVAT 406
|
|
| Bromodomain |
pfam00439 |
Bromodomain; Bromodomains are 110 amino acid long domains, that are found in many chromatin ... |
137-184 |
4.01e-05 |
|
Bromodomain; Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 425683 [Multi-domain] Cd Length: 84 Bit Score: 43.84 E-value: 4.01e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 530389740 137 MCLLQMEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQK 184
Cdd:pfam00439 37 MDLSTIKKKLENGEYKSLAEFLADVKLIFSNARTYNGPGSVIYKAAEK 84
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
1557-1863 |
5.05e-05 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 48.42 E-value: 5.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1557 SGTVPAIPSINILQNVTPKGEDKSSKGYILPLSTSGNSVPVSSNFVSQNITPVNESVVSSARAVNVLSVTGANLSLG--- 1633
Cdd:pfam17823 18 SHAAPADPRHFVLNKMWNGAGKQNASGDAVPRADNKSSEQ*NFCAATAAPAPVTLTKGTSAAHLNSTEVTAEHTPHGtdl 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1634 SFPVTSASASAGAQPPVLVSGndTSSRIMPILSNRLCSSSLGNTVAISTVKTGHLASSVLISTTQPVVSPKCLTSALQIP 1713
Cdd:pfam17823 98 SEPATREGAADGAASRALAAA--ASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIAAASAPHAASPAP 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1714 VTVALPTPATTSPKIINTVPHSAAVPGATRSVSISKRQSRTSLQFHsPGIST-------------TVPTNVNTNKPQTeL 1780
Cdd:pfam17823 176 RTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAATATGH-PAAGTalaavgnsspaagTVTAAVGTVTPAA-L 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1781 SSLSTSPGKITNTSNFASLPNQQALVKTPSySSAPGGTTIHTASAPSnvtslvGSQFSEPCIQQKI---VINTS---TPL 1854
Cdd:pfam17823 254 ATLAAAAGTVASAAGTINMGDPHARRLSPA-KHMPSDTMARNPAAPM------GAQAQGPIIQVSTdqpVHNTAgepTPS 326
|
....*....
gi 530389740 1855 APGTQIMIN 1863
Cdd:pfam17823 327 PSNTTLEPN 335
|
|
| Hia |
COG5295 |
Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, ... |
1107-1689 |
8.04e-05 |
|
Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444098 [Multi-domain] Cd Length: 785 Bit Score: 47.84 E-value: 8.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1107 SSFPQTTNINSSLASVFVNSPGTVSTQLPNTAFNKTITplSNISSARPQPLSPVTSVSNLLTPSVKTSQSEAGKAKNAVS 1186
Cdd:COG5295 29 SATVTSAAQSTGSAATSSGSSSAAGGSGSTSSLTAAAA--TAGAGSGGTSATAASSVASGGASAATAASTGTGNTAGTAA 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1187 AATFSLPSASPTISSTGQPLSSTTTLNGSTNPGSSFncfAQQTADSSEAKQELKTVcIRDSQSILVRTRGGNTGVVKVQT 1266
Cdd:COG5295 107 TVAGAASSGSATNAGASAGASAAAAAGSTAAAGGAA---ASTGGSSAAGGSNTATA-TGSSTANAATAAAGATSTSASGS 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1267 NPdqNSPNTVSSSSVFTFAPQLQAFLVPKSTTSSSAFSPVAGTTTTSSLSPFSQTPTSVSIPASFAPSMGK-NLKLTLGH 1345
Cdd:COG5295 183 SS--GASGAAAASAATGASAGGTASAAASASSSATGTSASVGVNAGAATGSAASAGGSASAGAASGNATTAsASSVSGSA 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1346 TTGSGDLGHVIDKTSHMPSSPLKSSICSSTLLPSTTSSSVSVISISAANFGQNNANIIHTPTKQQQvdyITKSYPVTRSE 1425
Cdd:COG5295 261 VAAGTASTATTASTTAASGAAGTATAAAGGDAAAAGSASSTGAANATAGGGNAGSGGGGAAALGSA---GGSSGVGTASG 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1426 ATAATNGDVISGTPVQ---KLMLVSAPSILSSGNGTAINMTPALTSTGVSAQKLVFINAPVPSGTSTPTLVAESlkqtlp 1502
Cdd:COG5295 338 ASAAAATNDGTANGAGtsaAADATSGGGAGGGGAAATSSSGGSATAAGNAAGAAGAGSAGSGGSSTGASAGGGA------ 411
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1503 pplhKAYVKTPEQPQIVLIPSTVGTPIKINSSPAVSQIKDVKIGLNIGQAIVNTSGTVPAIPSINILQNVTPKGEDKSSK 1582
Cdd:COG5295 412 ----SAAGGAAAGSAAAGTSSNTSAVGASNGASGTSSSASSAGAAGGGTAGAGGAANVGAATTAASAAATAAAATSSAAI 487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1583 GYILPLSTSGNSVPVSSNFVSQNITPVNESVVSSARAVNVLSVTGANLSLGSFPVTSASASAGAQPPVLVSGNDTSSRIM 1662
Cdd:COG5295 488 AGATATGAGAAAGGAGAGAAGGAGSAAAGGAANAAAASGATATAGSAGGGAAAAAGGGSTTAATGTNSVAVGNNTATGAN 567
|
570 580
....*....|....*....|....*..
gi 530389740 1663 PILSNRLCSSSLGNTVAISTVKTGHLA 1689
Cdd:COG5295 568 SVALGAGSVASGANSVSVGAAGAENVA 594
|
|
| CCDC34 |
pfam13904 |
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several ... |
250-288 |
1.07e-04 |
|
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known.
Pssm-ID: 464032 [Multi-domain] Cd Length: 221 Bit Score: 45.85 E-value: 1.07e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 530389740 250 QVLRQEEQLRAKEEKRLREQERKEAEEASQKEIEEW-ERK 288
Cdd:pfam13904 65 QRQRQKELQAQKEEREKEEQEAELRKRLAKEKYQEWlQRK 104
|
|
| Bromo_tif1_like |
cd05502 |
Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of ... |
140-196 |
1.37e-04 |
|
Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Pssm-ID: 99934 [Multi-domain] Cd Length: 109 Bit Score: 43.05 E-value: 1.37e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 530389740 140 LQMEEkfaSGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMMLEQKLALL 196
Cdd:cd05502 53 LQPKS---PQHYSSPEEFVADVRLMFKNCYKFNEEDSEVAQAGKELELFFEEQLKEI 106
|
|
| Chi1 |
COG3469 |
Chitinase [Carbohydrate transport and metabolism]; |
1126-1340 |
2.06e-04 |
|
Chitinase [Carbohydrate transport and metabolism];
Pssm-ID: 442692 [Multi-domain] Cd Length: 534 Bit Score: 46.28 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1126 SPGTVSTQLPNTAFNKTITPLSNISSARPQPLSPVTSVSNLLTPSVKTSQSEAGKAKNAVSAATFSLPSASPTiSSTGQP 1205
Cdd:COG3469 3 SVSTAASPTAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSST-TSTTAT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1206 LSSTTTLNGSTNPGSSFNCFAQQTADSSEAKQELKTVCIRDSQSILVRTrGGNTGVVKVQTNPDQNSPNTVSSSSVFTFA 1285
Cdd:COG3469 82 ATAAAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTA-GSTTTSGASATSSAGSTTTTTTVSGTETAT 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 530389740 1286 PQlqAFLVPKSTTSSSAFSPVAGTTTTSSLSPFSQTPTSVSIPASFAPSMGKNLK 1340
Cdd:COG3469 161 GG--TTTTSTTTTTTSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGLP 213
|
|
| MAP7 |
pfam05672 |
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
253-292 |
2.15e-04 |
|
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent.
Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 43.49 E-value: 2.15e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 530389740 253 RQEEQLRAKEEKRLRE--QERKEAEEASQKEIEEWERKLLAQ 292
Cdd:pfam05672 59 REEEARRLEEERRREEeeRQRKAEEEAEEREQREQEEQERLQ 100
|
|
| COG5099 |
COG5099 |
RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal ... |
1111-1327 |
6.98e-04 |
|
RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis];
Pssm-ID: 227430 [Multi-domain] Cd Length: 777 Bit Score: 44.74 E-value: 6.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1111 QTTNINSSLASVFVNSPGTVSTQLPNTAFNKTITPLSNISsarPQPLSPVTSVSNLLTPSVKTSQSEagKAKNAVSAATF 1190
Cdd:COG5099 5 TMNNLLPSIKSQLHHSKKSPPSSTTSQELMNGNSTPNSFS---PIPSKASSSATFTLNLPINNSVNH--KITSSSSSRRK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1191 SLPSASPTISST--GQPLSSTTTLNGSTNPGSSFNCFAQQTADSSEAKQELKTVcirdSQSILVRTRGGNTGVVKVQTNP 1268
Cdd:COG5099 80 PSGSWSVAISSStsGSQSLLMELPSSSFNPSTSSRNKSNSALSSTQQGNANSSV----TLSSSTASSMFNSNKLPLPNPN 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 530389740 1269 DQNSPNTVSSSSVFTFAPQLQAFlvpKSTTSSSAFSPVAGTTTTSSLSPFSQTPTSVSI 1327
Cdd:COG5099 156 HSNSATTNQSGSSFINTPASSSS---QPLTNLVVSSIKRFPYLTSLSPFFNYLIDPSSD 211
|
|
| Selenoprotein_S |
pfam06936 |
Selenoprotein S (SelS); This family consists of several mammalian selenoprotein S (SelS) ... |
225-287 |
9.40e-04 |
|
Selenoprotein S (SelS); This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. Selenoprotein S (SelS) is an intrinsically disordered protein. It formsa selenosulfide bond between cys 174 and Sec 188, that has a redox potential -234 mV. In vitro, SelS is an efficient reductase that depends on the presence of selenocysteine. Due to the high reactivity, SelS also has peroxidase activity that can catalyze the reduction of hydrogen peroxide. It is also resistant to inactivation by hydrogen peroxide which might provide evolutionary advantage compared to cysteine containing peroxidases.
Pssm-ID: 462043 [Multi-domain] Cd Length: 192 Bit Score: 42.52 E-value: 9.40e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530389740 225 TSTRRRSTPRSLAGLTSGVF----ESIMVQVLRQEEQLRAKEEKrLREQERKEAEEASQKEIEEWER 287
Cdd:pfam06936 59 TALRQRSSDHSAATVDPDLVvkrqEALEASRLRMQEELDAQAEK-FKEKQKQLEEEKRRQKIEMWES 124
|
|
| PHA03255 |
PHA03255 |
BDLF3; Provisional |
1096-1218 |
1.64e-03 |
|
BDLF3; Provisional
Pssm-ID: 165513 [Multi-domain] Cd Length: 234 Bit Score: 42.20 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1096 PLQQKGTEQHCSSFPQTTNINSSLASVFVNSPGTVSTQLPNTAFNKTITPLSNISSARPQPLSPVTSVSNLLTPSVKTSQ 1175
Cdd:PHA03255 53 PSTNQSTTLTTTSAPITTTAILSTNTTTVTSTGTTVTPVPTTSNASTINVTTKVTAQNITATEAGTGTSTGVTSNVTTRS 132
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 530389740 1176 SEAGKAKNAVSAATfslpSASPTISSTGQPLSSTTTLNGSTNP 1218
Cdd:PHA03255 133 SSTTSATTRITNAT----TLAPTLSSKGTSNATKTTAELPTVP 171
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1150-1730 |
7.55e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 41.44 E-value: 7.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1150 SSARPQPLSPVTSVSNLLTPSVKTSQSEAGKAKNAVSAATFSLPSASPTISSTGQPLSSTTTlNGSTNPGSSFncfaqqt 1229
Cdd:pfam05109 312 SQDMPTNTTDITYVGDNATYSVPMVTSEDANSPNVTVTAFWAWPNNTETDFKCKWTLTSGTP-SGCENISGAF------- 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1230 adSSEAKQELKTVCIRDSQSILVRTRGGNTGVvkvqtnpdqnspnTVSSSSVFTFAPQlqaflvpkSTTSSSAFSPV--A 1307
Cdd:pfam05109 384 --ASNRTFDITVSGLGTAPKTLIITRTATNAT-------------TTTHKVIFSKAPE--------STTTSPTLNTTgfA 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1308 GTTTTSSLSPFSQTPTSVSIPASFAPSMGknlkltlghttgsgdlghVIDKTSHMPSSplkSSICSSTLLPSTTSssvsv 1387
Cdd:pfam05109 441 APNTTTGLPSSTHVPTNLTAPASTGPTVS------------------TADVTSPTPAG---TTSGASPVTPSPSP----- 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1388 isisaanfgQNNANIIHTPTKQQQVDYITKSYPVTRSEATAATNGDVISGTPVqkLMLVSAPSILSSGNGTAINMTPALT 1467
Cdd:pfam05109 495 ---------RDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSPT--LGKTSPTSAVTTPTPNATSPTPAVT 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1468 STGVsaqklvfiNAPVPS-GTSTPTLVAeslkqTLPPPLHKAYVKTPEQPQIVLIPSTVGtpiKINSSPAV-SQIKDVKI 1545
Cdd:pfam05109 564 TPTP--------NATIPTlGKTSPTSAV-----TTPTPNATSPTVGETSPQANTTNHTLG---GTSSTPVVtSPPKNATS 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1546 GLNIGQAIVNTSGTVP-AIPSINILQNVTPKGEDKSSKGyiLPLSTSGNsvPVSSNFVSQnITPVNES---VVSSARAVN 1621
Cdd:pfam05109 628 AVTTGQHNITSSSTSSmSLRPSSISETLSPSTSDNSTSH--MPLLTSAH--PTGGENITQ-VTPASTSthhVSTSSPAPR 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530389740 1622 VLSVTGA----NLSLGSFP----VTSASASAGAQPPVLVSGNDTSSRIMPILSNRLCSSSLGNTVA-------------- 1679
Cdd:pfam05109 703 PGTTSQAsgpgNSSTSTKPgevnVTKGTPPKNATSPQAPSGQKTAVPTVTSTGGKANSTTGGKHTTghgartstepttdy 782
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 530389740 1680 ---ISTVKTGHLASSVLISTTQPVVSPK-CLTSAlqiPVTVA---LPTPATTSPKIIN 1730
Cdd:pfam05109 783 ggdSTTPRTRYNATTYLPPSTSSKLRPRwTFTSP---PVTTAqatVPVPPTSQPRFSN 837
|
|
| Casc1_N |
pfam15927 |
Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally ... |
256-293 |
7.70e-03 |
|
Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally uncharacterized. This domain family is found in eukaryotes, and is approximately 200 amino acids in length. The family is found in association with pfam12366. There are two completely conserved residues (N and W) that may be functionally important.
Pssm-ID: 464947 [Multi-domain] Cd Length: 201 Bit Score: 40.04 E-value: 7.70e-03
10 20 30
....*....|....*....|....*....|....*....
gi 530389740 256 EQLRAKEEKRLR-EQERKEAEEASQKEIEEWERKLLAQA 293
Cdd:pfam15927 1 ARLREEEEERLRaEEEEAERLEEERREEEEEERLAAEQD 39
|
|
| |
