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Conserved domains on  [gi|530390222|ref|XP_005251675|]
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sperm microtubule inner protein 6 isoform X1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SMRP1 super family cl21046
Spermatid-specific manchette-related protein 1; This family of proteins, SMRP1, is thought to ...
 1-104 8.60e-63

Spermatid-specific manchette-related protein 1; This family of proteins, SMRP1, is thought to have a role in spermatogenesis and may be involved in differentiation or function of ciliated cells. This family of proteins is found in eukaryotes. Proteins in this family are typically approximately 260 amino acids in length.


The actual alignment was detected with superfamily member pfam15181:

Pssm-ID: 464548  Cd Length: 262  Bit Score: 194.07  E-value: 8.60e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390222    1 METAVRGMPLECPPRPERLNAYEREVMVNMLNSLSRNQQLPRITPRCGCVDPLPGRLPFHGYESACSGRHYCLRGMDYYA 80
Cdd:pfam15181 136 METMMRGMPLEYPPKPERLNAYEREVVVNMLNSLSRNQTLPSIQPRCGCYTPLPGRLPFQGYDSACSGRHYCLRGMDYCT 215

                          90       100
                  ....*....|....*....|....
gi 530390222   81 SGAPCTDRRLRPWCREQPTvRCVP 104
Cdd:pfam15181 216 TGAPSTERHLRALCPEQPT-ECPP 238
 
Name Accession Description Interval E-value
SMRP1 pfam15181
Spermatid-specific manchette-related protein 1; This family of proteins, SMRP1, is thought to ...
 1-104 8.60e-63

Spermatid-specific manchette-related protein 1; This family of proteins, SMRP1, is thought to have a role in spermatogenesis and may be involved in differentiation or function of ciliated cells. This family of proteins is found in eukaryotes. Proteins in this family are typically approximately 260 amino acids in length.


Pssm-ID: 464548  Cd Length: 262  Bit Score: 194.07  E-value: 8.60e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390222    1 METAVRGMPLECPPRPERLNAYEREVMVNMLNSLSRNQQLPRITPRCGCVDPLPGRLPFHGYESACSGRHYCLRGMDYYA 80
Cdd:pfam15181 136 METMMRGMPLEYPPKPERLNAYEREVVVNMLNSLSRNQTLPSIQPRCGCYTPLPGRLPFQGYDSACSGRHYCLRGMDYCT 215

                          90       100
                  ....*....|....*....|....
gi 530390222   81 SGAPCTDRRLRPWCREQPTvRCVP 104
Cdd:pfam15181 216 TGAPSTERHLRALCPEQPT-ECPP 238
 
Name Accession Description Interval E-value
SMRP1 pfam15181
Spermatid-specific manchette-related protein 1; This family of proteins, SMRP1, is thought to ...
 1-104 8.60e-63

Spermatid-specific manchette-related protein 1; This family of proteins, SMRP1, is thought to have a role in spermatogenesis and may be involved in differentiation or function of ciliated cells. This family of proteins is found in eukaryotes. Proteins in this family are typically approximately 260 amino acids in length.


Pssm-ID: 464548  Cd Length: 262  Bit Score: 194.07  E-value: 8.60e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390222    1 METAVRGMPLECPPRPERLNAYEREVMVNMLNSLSRNQQLPRITPRCGCVDPLPGRLPFHGYESACSGRHYCLRGMDYYA 80
Cdd:pfam15181 136 METMMRGMPLEYPPKPERLNAYEREVVVNMLNSLSRNQTLPSIQPRCGCYTPLPGRLPFQGYDSACSGRHYCLRGMDYCT 215

                          90       100
                  ....*....|....*....|....
gi 530390222   81 SGAPCTDRRLRPWCREQPTvRCVP 104
Cdd:pfam15181 216 TGAPSTERHLRALCPEQPT-ECPP 238
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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