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Conserved domains on  [gi|530390397|ref|XP_005251701|]
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rab9 effector protein with kelch motifs isoform X6 [Homo sapiens]

Protein Classification

Kelch repeat-containing protein( domain architecture ID 1015026)

Kelch repeat-containing protein, member of a superfamily of proteins with diverse functions

CATH:  2.120.10.80
Gene Ontology:  GO:0005515
PubMed:  10603472|31442578|24959344
SCOP:  3000448

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NanM super family cl34543
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
56-186 4.13e-16

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG3055:

Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 75.96  E-value: 4.13e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390397  56 GKVFIVGGANPNRSFSDVHTMDLDTLTWSQpetLGNPP-SPRHGHVMVAAGTKLFIHGGLAGD----RFYDDLHCIDISD 130
Cdd:COG3055   23 GKVYVAGGLSGGSASNSFEVYDPATNTWSE---LAPLPgPPRHHAAAVAQDGKLYVFGGFTGAnpssTPLNDVYVYDPAT 99

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 530390397 131 MKWQKLNPtgaAPAGCAAHSAVAMGKHVYIFGGMTPAGALDTMYQYHTEEQHWTLL 186
Cdd:COG3055  100 NTWTKLAP---MPTPRGGATALLLDGKIYVVGGWDDGGNVAWVEVYDPATGTWTQL 152
 
Name Accession Description Interval E-value
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
56-186 4.13e-16

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 75.96  E-value: 4.13e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390397  56 GKVFIVGGANPNRSFSDVHTMDLDTLTWSQpetLGNPP-SPRHGHVMVAAGTKLFIHGGLAGD----RFYDDLHCIDISD 130
Cdd:COG3055   23 GKVYVAGGLSGGSASNSFEVYDPATNTWSE---LAPLPgPPRHHAAAVAQDGKLYVFGGFTGAnpssTPLNDVYVYDPAT 99

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 530390397 131 MKWQKLNPtgaAPAGCAAHSAVAMGKHVYIFGGMTPAGALDTMYQYHTEEQHWTLL 186
Cdd:COG3055  100 NTWTKLAP---MPTPRGGATALLLDGKIYVVGGWDDGGNVAWVEVYDPATGTWTQL 152
PLN02193 PLN02193
nitrile-specifier protein
 17-183 1.21e-15

nitrile-specifier protein


Pssm-ID: 177844 [Multi-domain]  Cd Length: 470  Bit Score: 76.15  E-value: 1.21e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390397  17 PGDKPRKATWYTLTVPGDSPCARVGHScsyLPPVGNakrgKVFIVGGA-NPNRSFSD-VHTMDLDTLTWS-QPETLGNPP 93
Cdd:PLN02193 144 PSTPKLLGKWIKVEQKGEGPGLRCSHG---IAQVGN----KIYSFGGEfTPNQPIDKhLYVFDLETRTWSiSPATGDVPH 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390397  94 SPRHGHVMVAAGTKLFIHGGLAGDRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMTPAGALDTM 173
Cdd:PLN02193 217 LSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTL 296

                        170
                 ....*....|
gi 530390397 174 YQYHTEEQHW 183
Cdd:PLN02193 297 DSYNIVDKKW 306
Kelch_3 pfam13415
Galactose oxidase, central domain;
55-104 2.15e-06

Galactose oxidase, central domain;


Pssm-ID: 433188 [Multi-domain]  Cd Length: 49  Bit Score: 43.82  E-value: 2.15e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 530390397   55 RGKVFIVGGANPNRS--FSDVHTMDLDTLTWsqpETLGNPPSPRHGHVMVAA 104
Cdd:pfam13415   1 GDKLYIFGGLGFDGQtrLNDLYVYDLDTNTW---TQIGDLPPPRSGHSATYI 49
 
Name Accession Description Interval E-value
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
56-186 4.13e-16

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 75.96  E-value: 4.13e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390397  56 GKVFIVGGANPNRSFSDVHTMDLDTLTWSQpetLGNPP-SPRHGHVMVAAGTKLFIHGGLAGD----RFYDDLHCIDISD 130
Cdd:COG3055   23 GKVYVAGGLSGGSASNSFEVYDPATNTWSE---LAPLPgPPRHHAAAVAQDGKLYVFGGFTGAnpssTPLNDVYVYDPAT 99

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 530390397 131 MKWQKLNPtgaAPAGCAAHSAVAMGKHVYIFGGMTPAGALDTMYQYHTEEQHWTLL 186
Cdd:COG3055  100 NTWTKLAP---MPTPRGGATALLLDGKIYVVGGWDDGGNVAWVEVYDPATGTWTQL 152
PLN02193 PLN02193
nitrile-specifier protein
 17-183 1.21e-15

nitrile-specifier protein


Pssm-ID: 177844 [Multi-domain]  Cd Length: 470  Bit Score: 76.15  E-value: 1.21e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390397  17 PGDKPRKATWYTLTVPGDSPCARVGHScsyLPPVGNakrgKVFIVGGA-NPNRSFSD-VHTMDLDTLTWS-QPETLGNPP 93
Cdd:PLN02193 144 PSTPKLLGKWIKVEQKGEGPGLRCSHG---IAQVGN----KIYSFGGEfTPNQPIDKhLYVFDLETRTWSiSPATGDVPH 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390397  94 SPRHGHVMVAAGTKLFIHGGLAGDRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMTPAGALDTM 173
Cdd:PLN02193 217 LSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTL 296

                        170
                 ....*....|
gi 530390397 174 YQYHTEEQHW 183
Cdd:PLN02193 297 DSYNIVDKKW 306
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
21-186 1.22e-15

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 74.81  E-value: 1.22e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390397  21 PRKATWYTLtvpGDSPCARVGHSCSYLppvgnakRGKVFIVGGANPNRSFSDVHTMDLDTLTWSQpetLGNPPSPRHGH- 99
Cdd:COG3055   97 PATNTWTKL---APMPTPRGGATALLL-------DGKIYVVGGWDDGGNVAWVEVYDPATGTWTQ---LAPLPTPRDHLa 163

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390397 100 VMVAAGTKLFIHGGLAGDRFYDdlhcidisdmKWQKLNPtgaAPAGCAAHSAVAMGKHVYIFGGMTpaGALDTMYQYHTE 179
Cdd:COG3055  164 AAVLPDGKILVIGGRNGSGFSN----------TWTTLAP---LPTARAGHAAAVLGGKILVFGGES--GFSDEVEAYDPA 228


                 ....*..
gi 530390397 180 EQHWTLL 186
Cdd:COG3055  229 TNTWTAL 235
PLN02153 PLN02153
epithiospecifier protein
 33-182 5.68e-14

epithiospecifier protein


Pssm-ID: 177814 [Multi-domain]  Cd Length: 341  Bit Score: 70.79  E-value: 5.68e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390397  33 GDSPCARVGHScsyLPPVGNakrgKVFIVGGA-NPNRSF-SDVHTMDLDTLTWSQPETLGNPPS-PRHGHVMVAAGTKLF 109
Cdd:PLN02153  17 GKGPGPRCSHG---IAVVGD----KLYSFGGElKPNEHIdKDLYVFDFNTHTWSIAPANGDVPRiSCLGVRMVAVGTKLY 89

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530390397 110 IHGGLAGDRFYDDLHCIDISDMKWQ---KLNPTGAaPAGCAAHSAVAMGKHVYIFGGMTPAGALDTMYQYHTEEQH 182
Cdd:PLN02153  90 IFGGRDEKREFSDFYSYDTVKNEWTfltKLDEEGG-PEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
21-172 8.27e-13

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 66.72  E-value: 8.27e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390397  21 PRKATWYTLtvpGDSPCARVGHSCSYLPpvgnakRGKVFIVGGANPN----RSFSDVHTMDLDTLTWSQpetLGNPPSPR 96
Cdd:COG3055   45 PATNTWSEL---APLPGPPRHHAAAVAQ------DGKLYVFGGFTGAnpssTPLNDVYVYDPATNTWTK---LAPMPTPR 112

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530390397  97 HGHVMVAAGTKLFIHGGLAGDRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAhsAVAMGKHVYIFGGMTPAGALDT 172
Cdd:COG3055  113 GGATALLLDGKIYVVGGWDDGGNVAWVEVYDPATGTWTQLAPLPTPRDHLAA--AVLPDGKILVIGGRNGSGFSNT 186
PLN02153 PLN02153
epithiospecifier protein
 90-201 1.44e-11

epithiospecifier protein


Pssm-ID: 177814 [Multi-domain]  Cd Length: 341  Bit Score: 63.85  E-value: 1.44e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390397  90 GNPPSPRHGHVMVAAGTKLFIHGG-LAGDRFYD-DLHCIDISDMKWQKLNPTGAAPA-GCAAHSAVAMGKHVYIFGGMTP 166
Cdd:PLN02153  17 GKGPGPRCSHGIAVVGDKLYSFGGeLKPNEHIDkDLYVFDFNTHTWSIAPANGDVPRiSCLGVRMVAVGTKLYIFGGRDE 96

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 530390397 167 AGALDTMYQYHTEEQHWTLL-KFDTL-LPPGRLDHSM 201
Cdd:PLN02153  97 KREFSDFYSYDTVKNEWTFLtKLDEEgGPEARTFHSM 133
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
82-201 2.23e-11

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 62.48  E-value: 2.23e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390397  82 TWSqpeTLGNPPSPRHGHVMVAAGTKLFIHGGLAGDRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAhsAVAMGKHVYIF 161
Cdd:COG3055    2 TWS---SLPDLPTPRSEAAAALLDGKVYVAGGLSGGSASNSFEVYDPATNTWSELAPLPGPPRHHAA--AVAQDGKLYVF 76

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 530390397 162 GGMTPA----GALDTMYQYHTEEQHWTLLkfdTLLPPGRLDHSM 201
Cdd:COG3055   77 GGFTGAnpssTPLNDVYVYDPATNTWTKL---APMPTPRGGATA 117
PLN02193 PLN02193
nitrile-specifier protein
 26-186 1.05e-08

nitrile-specifier protein


Pssm-ID: 177844 [Multi-domain]  Cd Length: 470  Bit Score: 55.35  E-value: 1.05e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390397  26 WYTLTVPGDSPCARVGHSCSylppvgnAKRGKVFIVGGANPNRSFSDVHTMDLDTLTWSQPETLGNPPSPRHGHVMVAAG 105
Cdd:PLN02193 256 WKLLTPVEEGPTPRSFHSMA-------ADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQ 328

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390397 106 TKLFIHGGLAGDRFyDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGG---------MTPAGALDTMYQY 176
Cdd:PLN02193 329 GKVWVVYGFNGCEV-DDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGeiamdplahVGPGQLTDGTFAL 407

                        170
                 ....*....|
gi 530390397 177 HTEEQHWTLL 186
Cdd:PLN02193 408 DTETLQWERL 417
PRK14131 PRK14131
N-acetylneuraminate epimerase;
92-163 1.86e-08

N-acetylneuraminate epimerase;


Pssm-ID: 237617 [Multi-domain]  Cd Length: 376  Bit Score: 54.64  E-value: 1.86e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530390397  92 PPSPRHGHVMVAAGTKLFIHGGL------AGDRFYDDLHCIDISDMKWQKLNPTgaAPAGCAAHSAVAM-GKHVYIFGG 163
Cdd:PRK14131  71 PGGPREQAVAAFIDGKLYVFGGIgktnseGSPQVFDDVYKYDPKTNSWQKLDTR--SPVGLAGHVAVSLhNGKAYITGG 147
PLN02193 PLN02193
nitrile-specifier protein
 25-166 2.40e-07

nitrile-specifier protein


Pssm-ID: 177844 [Multi-domain]  Cd Length: 470  Bit Score: 51.49  E-value: 2.40e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390397  25 TWYTLTVPGDSPCARVGHSCSYLppvgnakRGKVFIVGGANpNRSFSDVHTMDLDTLTWSQPETLGNPPSPRHGHVMVAA 104
Cdd:PLN02193 305 KWFHCSTPGDSFSIRGGAGLEVV-------QGKVWVVYGFN-GCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV 376

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530390397 105 GTKLFIHGG-LAGD--------RFYDDLHCIDISDMKWQKLNPTGA---APA--GCAAHSAVAMG--KHVYIFGGMTP 166
Cdd:PLN02193 377 GKHIVIFGGeIAMDplahvgpgQLTDGTFALDTETLQWERLDKFGEeeeTPSsrGWTASTTGTIDgkKGLVMHGGKAP 454
PLN02193 PLN02193
nitrile-specifier protein
 83-201 5.58e-07

nitrile-specifier protein


Pssm-ID: 177844 [Multi-domain]  Cd Length: 470  Bit Score: 50.34  E-value: 5.58e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390397  83 WSQPETLGNPPSPRHGHVMVAAGTKLFIHGG-LAGDRFYDD-LHCIDISDMKWQKLNPTGAAPA-GCAAHSAVAMGKHVY 159
Cdd:PLN02193 153 WIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGeFTPNQPIDKhLYVFDLETRTWSISPATGDVPHlSCLGVRMVSIGSTLY 232

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 530390397 160 IFGGMTPAGALDTMYQYHTEEQHWTLLKFDTLLPPGRLDHSM 201
Cdd:PLN02193 233 VFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSM 274
Kelch_3 pfam13415
Galactose oxidase, central domain;
55-104 2.15e-06

Galactose oxidase, central domain;


Pssm-ID: 433188 [Multi-domain]  Cd Length: 49  Bit Score: 43.82  E-value: 2.15e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 530390397   55 RGKVFIVGGANPNRS--FSDVHTMDLDTLTWsqpETLGNPPSPRHGHVMVAA 104
Cdd:pfam13415   1 GDKLYIFGGLGFDGQtrLNDLYVYDLDTNTW---TQIGDLPPPRSGHSATYI 49
Kelch_4 pfam13418
Galactose oxidase, central domain;
38-94 2.64e-06

Galactose oxidase, central domain;


Pssm-ID: 433191 [Multi-domain]  Cd Length: 49  Bit Score: 43.37  E-value: 2.64e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 530390397   38 ARVGHSCSYLPpvgnakRGKVFIVGGAN-PNRSFSDVHTMDLDTLTWSQpetLGNPPS 94
Cdd:pfam13418   1 PRAYHTSTSIP------DDTIYLFGGEGeDGTLLSDLWVFDLSTNEWTR---LGSLPS 49
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
28-113 6.93e-06

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 46.30  E-value: 6.93e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390397  28 TLTVPGDSPCARVGHSCSYLppvgnakRGKVFIVGGANpnRSFSDVHTMDLDTLTWSqpeTLGNPPSPRHGHVMVAAGTK 107
Cdd:COG3055  186 TWTTLAPLPTARAGHAAAVL-------GGKILVFGGES--GFSDEVEAYDPATNTWT---ALGELPTPRHGHAAVLTDGK 253


                 ....*.
gi 530390397 108 LFIHGG 113
Cdd:COG3055  254 VYVIGG 259
Kelch_1 pfam01344
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 146-186 1.78e-05

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 396078 [Multi-domain]  Cd Length: 46  Bit Score: 41.06  E-value: 1.78e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 530390397  146 CAAHSAVAMGKHVYIFGGMTPAGALDTMYQYHTEEQHWTLL 186
Cdd:pfam01344   2 RSGAGVVVVGGKIYVIGGFDGNQSLNSVEVYDPETNTWSKL 42
PHA03098 PHA03098
kelch-like protein; Provisional
 49-204 3.95e-05

kelch-like protein; Provisional


Pssm-ID: 222983 [Multi-domain]  Cd Length: 534  Bit Score: 44.76  E-value: 3.95e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390397  49 PVGNAKRGKVFIVGGANPNRSFSDVHTMDLDTLTWSQPETLgnpPSPRHGHVMVAAGTKLFIHGGLA-GDRFYDDLHCID 127
Cdd:PHA03098 336 PGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPL---IFPRYNPCVVNVNNLIYVIGGISkNDELLKTVECFS 412

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390397 128 ISDMKWQKLNPTgaaPAGCAAHSAVAMGKHVYIFGGMTPA---GALDTMYQYHTEEQHWTLLKfdTLLPPgRLDHSMCII 204
Cdd:PHA03098 413 LNTNKWSKGSPL---PISHYGGCAIYHDGKIYVIGGISYIdniKVYNIVESYNPVTNKWTELS--SLNFP-RINASLCIF 486
Kelch_1 pfam01344
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 95-138 1.10e-04

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 396078 [Multi-domain]  Cd Length: 46  Bit Score: 38.75  E-value: 1.10e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 530390397   95 PRHGHVMVAAGTKLFIHGGLAGDRFYDDLHCIDISDMKWQKLNP 138
Cdd:pfam01344   1 RRSGAGVVVVGGKIYVIGGFDGNQSLNSVEVYDPETNTWSKLPS 44
Kelch_4 pfam13418
Galactose oxidase, central domain;
95-136 2.17e-04

Galactose oxidase, central domain;


Pssm-ID: 433191 [Multi-domain]  Cd Length: 49  Bit Score: 38.36  E-value: 2.17e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 530390397   95 PRHGHVMVA-AGTKLFIHGGLAGD-RFYDDLHCIDISDMKWQKL 136
Cdd:pfam13418   1 PRAYHTSTSiPDDTIYLFGGEGEDgTLLSDLWVFDLSTNEWTRL 44
Kelch_5 pfam13854
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 93-124 3.50e-04

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 433528 [Multi-domain]  Cd Length: 41  Bit Score: 37.54  E-value: 3.50e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 530390397   93 PSPRHGHVMVAAGTKLFIHGGLAGDR--FYDDLH 124
Cdd:pfam13854   1 PVPRYGHCAVTVGDYIYLYGGYTGGEgqPSDDVY 34
PLN02772 PLN02772
guanylate kinase
 57-117 5.36e-04

guanylate kinase


Pssm-ID: 215414 [Multi-domain]  Cd Length: 398  Bit Score: 40.98  E-value: 5.36e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 530390397  57 KVFIVGGAN-PNRSFSDVHTMDLDTLTWSQPETLGNPPSPRHGH--VMVAAGTKLFIHGGLAGD 117
Cdd:PLN02772  36 KTYVIGGNHeGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYsaVVLNKDRILVIKKGSAPD 99
Kelch_5 pfam13854
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 143-179 6.10e-03

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 433528 [Multi-domain]  Cd Length: 41  Bit Score: 33.69  E-value: 6.10e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 530390397  143 PAGCAAHSAVAMGKHVYIFGGMTPAG--ALDTMYQYHTE 179
Cdd:pfam13854   1 PVPRYGHCAVTVGDYIYLYGGYTGGEgqPSDDVYVLSLP 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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