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Conserved domains on  [gi|530390729|ref|XP_005251859|]
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Fanconi anemia group C protein isoform X9 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Fanconi_C super family cl20024
Fanconi anaemia group C protein;
1-328 0e+00

Fanconi anaemia group C protein;


The actual alignment was detected with superfamily member pfam02106:

Pssm-ID: 426603  Cd Length: 547  Bit Score: 552.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390729    1 MRKKISLPMSAVVCLWLRHLPSLEKAMLHLFEKLISSERNCLRRIECFIKDSSLPQA-ACHPAIFRVVDEMFRCALLETD 79
Cdd:pfam02106 218 LRKKISLPESAVVSLWLRHLPSLEKAVLHLLESLISSEGNSLQKLECLIKDSLLPQAsACHPAIFRVVNEIFRNVLLETD 297
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390729   80 GALEIIATIQVFTQCFVEALEKASKQLRFALKTYFPYTSPSLAMVLLQDPQDIPRGHWLQTLKHISELLREAVEDQTHGS 159
Cdd:pfam02106 298 GAPEVLALIQVFTQCFVQALEKENKQLRFPLKAYFPYSPPSLVMPLLTDPSEVPQGAWLQHLKWISELLRELVEDEETRS 377
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390729  160 CGGPFESWFLFIHFGGWAEMVAEQLLMSAAEPPTALLWLLAFYYGPRDGRQQRAQTMVQVKAVLGHLLAMSRSSSLSAQD 239
Cdd:pfam02106 378 CGNPFEAWFLLVHFGEWVDIAAELLVTSETEDPEALLWLLAFYYHPTNRGQQRAQTMVEAKEVWDHLRMLFRSHPLSAKD 457
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390729  240 LQTVAGQGTDTDLRAP-AQQLIRHLLLNFLLWAPGGHTIAWDVITLMAHTAEITHEIIGFLDQTLYRWNRLGIESPRSEK 318
Cdd:pfam02106 458 LQAVAGLLSPQDPRQSlTQQLIRHLLLNFLLFSPGGHSIAAEVIQKVAHTSGIRDEAIGLLDSTLYRLNRLGSEAPRVHK 537
                         330
                  ....*....|
gi 530390729  319 LARELLKELR 328
Cdd:pfam02106 538 LARELLQELQ 547
 
Name Accession Description Interval E-value
Fanconi_C pfam02106
Fanconi anaemia group C protein;
1-328 0e+00

Fanconi anaemia group C protein;


Pssm-ID: 426603  Cd Length: 547  Bit Score: 552.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390729    1 MRKKISLPMSAVVCLWLRHLPSLEKAMLHLFEKLISSERNCLRRIECFIKDSSLPQA-ACHPAIFRVVDEMFRCALLETD 79
Cdd:pfam02106 218 LRKKISLPESAVVSLWLRHLPSLEKAVLHLLESLISSEGNSLQKLECLIKDSLLPQAsACHPAIFRVVNEIFRNVLLETD 297
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390729   80 GALEIIATIQVFTQCFVEALEKASKQLRFALKTYFPYTSPSLAMVLLQDPQDIPRGHWLQTLKHISELLREAVEDQTHGS 159
Cdd:pfam02106 298 GAPEVLALIQVFTQCFVQALEKENKQLRFPLKAYFPYSPPSLVMPLLTDPSEVPQGAWLQHLKWISELLRELVEDEETRS 377
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390729  160 CGGPFESWFLFIHFGGWAEMVAEQLLMSAAEPPTALLWLLAFYYGPRDGRQQRAQTMVQVKAVLGHLLAMSRSSSLSAQD 239
Cdd:pfam02106 378 CGNPFEAWFLLVHFGEWVDIAAELLVTSETEDPEALLWLLAFYYHPTNRGQQRAQTMVEAKEVWDHLRMLFRSHPLSAKD 457
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390729  240 LQTVAGQGTDTDLRAP-AQQLIRHLLLNFLLWAPGGHTIAWDVITLMAHTAEITHEIIGFLDQTLYRWNRLGIESPRSEK 318
Cdd:pfam02106 458 LQAVAGLLSPQDPRQSlTQQLIRHLLLNFLLFSPGGHSIAAEVIQKVAHTSGIRDEAIGLLDSTLYRLNRLGSEAPRVHK 537
                         330
                  ....*....|
gi 530390729  319 LARELLKELR 328
Cdd:pfam02106 538 LARELLQELQ 547
 
Name Accession Description Interval E-value
Fanconi_C pfam02106
Fanconi anaemia group C protein;
1-328 0e+00

Fanconi anaemia group C protein;


Pssm-ID: 426603  Cd Length: 547  Bit Score: 552.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390729    1 MRKKISLPMSAVVCLWLRHLPSLEKAMLHLFEKLISSERNCLRRIECFIKDSSLPQA-ACHPAIFRVVDEMFRCALLETD 79
Cdd:pfam02106 218 LRKKISLPESAVVSLWLRHLPSLEKAVLHLLESLISSEGNSLQKLECLIKDSLLPQAsACHPAIFRVVNEIFRNVLLETD 297
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390729   80 GALEIIATIQVFTQCFVEALEKASKQLRFALKTYFPYTSPSLAMVLLQDPQDIPRGHWLQTLKHISELLREAVEDQTHGS 159
Cdd:pfam02106 298 GAPEVLALIQVFTQCFVQALEKENKQLRFPLKAYFPYSPPSLVMPLLTDPSEVPQGAWLQHLKWISELLRELVEDEETRS 377
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390729  160 CGGPFESWFLFIHFGGWAEMVAEQLLMSAAEPPTALLWLLAFYYGPRDGRQQRAQTMVQVKAVLGHLLAMSRSSSLSAQD 239
Cdd:pfam02106 378 CGNPFEAWFLLVHFGEWVDIAAELLVTSETEDPEALLWLLAFYYHPTNRGQQRAQTMVEAKEVWDHLRMLFRSHPLSAKD 457
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530390729  240 LQTVAGQGTDTDLRAP-AQQLIRHLLLNFLLWAPGGHTIAWDVITLMAHTAEITHEIIGFLDQTLYRWNRLGIESPRSEK 318
Cdd:pfam02106 458 LQAVAGLLSPQDPRQSlTQQLIRHLLLNFLLFSPGGHSIAAEVIQKVAHTSGIRDEAIGLLDSTLYRLNRLGSEAPRVHK 537
                         330
                  ....*....|
gi 530390729  319 LARELLKELR 328
Cdd:pfam02106 538 LARELLQELQ 547
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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