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Conserved domains on  [gi|530415208|ref|XP_005260137|]
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procollagen galactosyltransferase 1 isoform X1 [Homo sapiens]

Protein Classification

glycosyltransferase family 25 protein( domain architecture ID 10007174)

glycosyltransferase family 25 protein may be involved in lipopolysaccharide (LPS) biosynthesis, facilitating the transfer of one of a variety of sugars onto a growing LPS chain, such as lacto-N-neotetraose biosynthesis glycosyltransferase LgtB, which adds the second galactose to the lacto-N-tetraose chain in lipooligosaccharide (LOS)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
COG3306 COG3306
Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope ...
260-522 2.51e-36

Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442535 [Multi-domain]  Cd Length: 238  Bit Score: 135.13  E-value: 2.51e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530415208 260 VFMINLRRRQDRRERMLRALQAQEIECRLVEAVDGKAMNTSQVEALGiqmlPGYRDPYHGRPLTKGELGCFLSHYNIWKE 339
Cdd:COG3306    3 IFVINLDRSTERREHIEAQLARLGLDFEFFDAVDGRDLSEEELARYD----RAKALRRYGRPLTPGEIGCFLSHRKAWQK 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530415208 340 VVDRGLQKSLVFEDDlrfeIFFKRRLMNLMRDVEREGLDWDLIYVGRKRMQVEHPEKAVPRV--RNLVEADYSYW-TLAY 416
Cdd:COG3306   79 IVESGLPYALILEDD----VILSPDFAEVLEALAWLPADWDIVKLETSKRKVFLGRRKIKKLggYRLVRPYSPPLgTAGY 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530415208 417 VISLQGARKLLA-AEPLSkmLPVDEFLPvmfdkhpvseykaHFSLRNLHAFSVEPLLIYPthytGDDGYVSDTEtsvvwn 495
Cdd:COG3306  155 LISRKAAKKLLAlLEPID--RPVDDFLF-------------RFWLHGLRVYQVRPALVIQ----DSGLLGSTIE------ 209
                        250       260
                 ....*....|....*....|....*..
gi 530415208 496 nehvktDWDRAKSQKMREQQALSREAK 522
Cdd:COG3306  210 ------AERRRKKRKRRLWDKLRRELR 230
 
Name Accession Description Interval E-value
COG3306 COG3306
Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope ...
260-522 2.51e-36

Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442535 [Multi-domain]  Cd Length: 238  Bit Score: 135.13  E-value: 2.51e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530415208 260 VFMINLRRRQDRRERMLRALQAQEIECRLVEAVDGKAMNTSQVEALGiqmlPGYRDPYHGRPLTKGELGCFLSHYNIWKE 339
Cdd:COG3306    3 IFVINLDRSTERREHIEAQLARLGLDFEFFDAVDGRDLSEEELARYD----RAKALRRYGRPLTPGEIGCFLSHRKAWQK 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530415208 340 VVDRGLQKSLVFEDDlrfeIFFKRRLMNLMRDVEREGLDWDLIYVGRKRMQVEHPEKAVPRV--RNLVEADYSYW-TLAY 416
Cdd:COG3306   79 IVESGLPYALILEDD----VILSPDFAEVLEALAWLPADWDIVKLETSKRKVFLGRRKIKKLggYRLVRPYSPPLgTAGY 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530415208 417 VISLQGARKLLA-AEPLSkmLPVDEFLPvmfdkhpvseykaHFSLRNLHAFSVEPLLIYPthytGDDGYVSDTEtsvvwn 495
Cdd:COG3306  155 LISRKAAKKLLAlLEPID--RPVDDFLF-------------RFWLHGLRVYQVRPALVIQ----DSGLLGSTIE------ 209
                        250       260
                 ....*....|....*....|....*..
gi 530415208 496 nehvktDWDRAKSQKMREQQALSREAK 522
Cdd:COG3306  210 ------AERRRKKRKRRLWDKLRRELR 230
Glyco_transf_25 pfam01755
Glycosyltransferase family 25 (LPS biosynthesis protein); Members of this family belong to ...
257-442 1.95e-34

Glycosyltransferase family 25 (LPS biosynthesis protein); Members of this family belong to Glycosyltransferase family 25 This is a family of glycosyltransferases involved in lipopolysaccharide (LPS) biosynthesis. These enzymes catalyze the transfer of various sugars onto the growing LPS chain during its biosynthesis.


Pssm-ID: 366794  Cd Length: 200  Bit Score: 128.71  E-value: 1.95e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530415208  257 FDEVFMINLRRRQDRRERMLRALQAQEIECRLVEAVDGKAMNTSQVEALgiqMLPGYRDPYHGRPLTKGELGCFLSHYNI 336
Cdd:pfam01755   1 MIKIYVISLKRATERREHIQKEFGKLNIPFQFFDAIDGKELPNHLLFKL---YNFLLRSKYAGRPLTLGEIGCFLSHYSL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530415208  337 WKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEregLDWDLIYVGRKRMQVEHPEKAVPRVRNLVEADYSY----- 411
Cdd:pfam01755  78 WQKCVELNLEYIIILEDDVILSENFKAILQFLLKEIN---ELEFLRLGEWLKTRFDPNDKFIVRLETFLMDSKKFkrtpi 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 530415208  412 ----------------WTLAYVISLQGARKLL-AAEPLSkmLPVDEFL 442
Cdd:pfam01755 155 adygnrafyllksghaGTAGYLITPKAAKKLLkYSKNWP--LPVDDLM 200
Glyco_transf_25 cd06532
Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of ...
259-442 4.63e-31

Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.


Pssm-ID: 133474  Cd Length: 128  Bit Score: 116.93  E-value: 4.63e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530415208 259 EVFMINLRRRQDRRERMLRALQAQEIECRLVEAVDGKAMNTSQVEALGIQmlpgYRDPYHGRPLTKGELGCFLSHYNIWK 338
Cdd:cd06532    1 KIFVINLDRSTDRRERMEAQLAALGLDFEFFDAVDGKDLSEEELAALYDA----LFLPRYGRPLTPGEIGCFLSHYKLWQ 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530415208 339 EVVDRGLQKSLVFEDDLRFEiffkrrlmnlmrdveregldwdliyvgrkrmqvehpekavprvrnlveadySYWTLAYVI 418
Cdd:cd06532   77 KIVESNLEYALILEDDAILD---------------------------------------------------PDGTAGYLV 105
                        170       180
                 ....*....|....*....|....
gi 530415208 419 SLQGARKLLAAEPlSKMLPVDEFL 442
Cdd:cd06532  106 SRKGAKKLLAALE-PIDLPVDVFL 128
 
Name Accession Description Interval E-value
COG3306 COG3306
Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope ...
260-522 2.51e-36

Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442535 [Multi-domain]  Cd Length: 238  Bit Score: 135.13  E-value: 2.51e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530415208 260 VFMINLRRRQDRRERMLRALQAQEIECRLVEAVDGKAMNTSQVEALGiqmlPGYRDPYHGRPLTKGELGCFLSHYNIWKE 339
Cdd:COG3306    3 IFVINLDRSTERREHIEAQLARLGLDFEFFDAVDGRDLSEEELARYD----RAKALRRYGRPLTPGEIGCFLSHRKAWQK 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530415208 340 VVDRGLQKSLVFEDDlrfeIFFKRRLMNLMRDVEREGLDWDLIYVGRKRMQVEHPEKAVPRV--RNLVEADYSYW-TLAY 416
Cdd:COG3306   79 IVESGLPYALILEDD----VILSPDFAEVLEALAWLPADWDIVKLETSKRKVFLGRRKIKKLggYRLVRPYSPPLgTAGY 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530415208 417 VISLQGARKLLA-AEPLSkmLPVDEFLPvmfdkhpvseykaHFSLRNLHAFSVEPLLIYPthytGDDGYVSDTEtsvvwn 495
Cdd:COG3306  155 LISRKAAKKLLAlLEPID--RPVDDFLF-------------RFWLHGLRVYQVRPALVIQ----DSGLLGSTIE------ 209
                        250       260
                 ....*....|....*....|....*..
gi 530415208 496 nehvktDWDRAKSQKMREQQALSREAK 522
Cdd:COG3306  210 ------AERRRKKRKRRLWDKLRRELR 230
Glyco_transf_25 pfam01755
Glycosyltransferase family 25 (LPS biosynthesis protein); Members of this family belong to ...
257-442 1.95e-34

Glycosyltransferase family 25 (LPS biosynthesis protein); Members of this family belong to Glycosyltransferase family 25 This is a family of glycosyltransferases involved in lipopolysaccharide (LPS) biosynthesis. These enzymes catalyze the transfer of various sugars onto the growing LPS chain during its biosynthesis.


Pssm-ID: 366794  Cd Length: 200  Bit Score: 128.71  E-value: 1.95e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530415208  257 FDEVFMINLRRRQDRRERMLRALQAQEIECRLVEAVDGKAMNTSQVEALgiqMLPGYRDPYHGRPLTKGELGCFLSHYNI 336
Cdd:pfam01755   1 MIKIYVISLKRATERREHIQKEFGKLNIPFQFFDAIDGKELPNHLLFKL---YNFLLRSKYAGRPLTLGEIGCFLSHYSL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530415208  337 WKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEregLDWDLIYVGRKRMQVEHPEKAVPRVRNLVEADYSY----- 411
Cdd:pfam01755  78 WQKCVELNLEYIIILEDDVILSENFKAILQFLLKEIN---ELEFLRLGEWLKTRFDPNDKFIVRLETFLMDSKKFkrtpi 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 530415208  412 ----------------WTLAYVISLQGARKLL-AAEPLSkmLPVDEFL 442
Cdd:pfam01755 155 adygnrafyllksghaGTAGYLITPKAAKKLLkYSKNWP--LPVDDLM 200
Glyco_transf_25 cd06532
Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of ...
259-442 4.63e-31

Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.


Pssm-ID: 133474  Cd Length: 128  Bit Score: 116.93  E-value: 4.63e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530415208 259 EVFMINLRRRQDRRERMLRALQAQEIECRLVEAVDGKAMNTSQVEALGIQmlpgYRDPYHGRPLTKGELGCFLSHYNIWK 338
Cdd:cd06532    1 KIFVINLDRSTDRRERMEAQLAALGLDFEFFDAVDGKDLSEEELAALYDA----LFLPRYGRPLTPGEIGCFLSHYKLWQ 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530415208 339 EVVDRGLQKSLVFEDDLRFEiffkrrlmnlmrdveregldwdliyvgrkrmqvehpekavprvrnlveadySYWTLAYVI 418
Cdd:cd06532   77 KIVESNLEYALILEDDAILD---------------------------------------------------PDGTAGYLV 105
                        170       180
                 ....*....|....*....|....
gi 530415208 419 SLQGARKLLAAEPlSKMLPVDEFL 442
Cdd:cd06532  106 SRKGAKKLLAALE-PIDLPVDVFL 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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