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Conserved domains on  [gi|530372840|ref|XP_005265373|]
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peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform X1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PAW pfam04721
PNGase C-terminal domain, mannose-binding module PAW; The PAW domain is found at the ...
 416-596 4.91e-98

PNGase C-terminal domain, mannose-binding module PAW; The PAW domain is found at the C-terminus of PGNase, or peptide-N-glycanase, enzymes. It was named for 'domain present in PNGases and other worm proteins'. PNGase catalyzes the deglycosylation of several misfolded N-linked glycoproteins by cleaving off the bulky glycan chain before these proteins are degraded by the proteasome. PNGase specifically acts on the unfolded form of high-mannose type N-glycosylated proteins, and this domain appears to be the mannose-binding domain, which contributes to the oligosaccharide-binding specificity of PNGase.


:

Pssm-ID: 461409  Cd Length: 197  Bit Score: 296.88  E-value: 4.91e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372840  416 GLNKQRKETLFIPCENEKISKQLHLCYNIVKDRYVRVSNNNQTISGWENGVWKMESIFRKVETDWHMVYLARKEGSSFAY 495
Cdd:pfam04721  17 GSATQEKEFVFKPTEKEKKAKLFHLRYSIVKDIYTRVSNNNETIKGWESGVFSSENIFRKVEHDWKMVYLARTEGTSSGS 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372840  496 ISWKFECGSVGLKVDSISIRTSSQTFQTGTVEWKLRSDTAQVELTGDNSLHSYADFSGATEVILEAELSRGDGDVAWQHT 575
Cdd:pfam04721  97 ISWKFDLSSSGLKIKSISLKASSQTFESGKVSWRLQSDKTTVEIPGDKTLQSLSSLSGATELTLTAELSGGDGDVAWQHA 176

                         170       180
                  ....*....|....*....|.
gi 530372840  576 QLFRQSLNDHEENCLEIIIKF 596
Cdd:pfam04721 177 QLFRQSLDDTEEYSLEIIITL 197
PUB_PNGase cd10459
PNGase/UBA or UBX (PUB) domain of the P97 adaptor protein Peptide:N-glycanase (PNGase); This ...
 19-109 5.86e-51

PNGase/UBA or UBX (PUB) domain of the P97 adaptor protein Peptide:N-glycanase (PNGase); This PUB (PNGase/UBA or UBX) domain is found in the p97 adaptor protein PNGase (Peptide:N-glycanase). The PUB domain functions as a p97 (also known as valosin-containing protein or VCP) adaptor by interacting with the D1 and/or D2 ATPase domains. The type II AAA+ ATPase p97 is involved in a variety of cellular processes such as the deglycosylation of ERAD substrates, membrane fusion, transcription factor activation and cell cycle regulation through differential binding to specific adaptor proteins. Peptide:N-glycanase (PNGase), a deglycosylating enzyme that functions in proteasome-dependent degradation of misfolded glycoproteins which are translocated from the endoplasmic reticulum (ER) to the cytosol during ERAD, associates with the ubiquitin-proteasome system proteins mediated by the N-terminal PUB domain. PNGase is present in all eukaryotic organisms; however, the yeast PNGase ortholog does not contain the PUB domain. The mammalian PNGase binds a considerable number of proteins via its PUB domain; these include ERAD E3 enzyme, the autocrine motility factor receptor (AMFR or gp78), SAKS and Derlin-1.


:

Pssm-ID: 198417  Cd Length: 93  Bit Score: 170.53  E-value: 5.86e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372840  19 ELCQNTPETFLEASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQL 98
Cdd:cd10459    3 LLEENSEDVFLEASEALLTYANNILRNPNDPKYRSIRLDNPVFSTKLLPARGAIECLFEMGFVEDEDRLFLPRNASLEKL 82

                         90
                 ....*....|.
gi 530372840  99 QKIRDLIAIER 109
Cdd:cd10459   83 QDLRDLLAAER 93
Transglut_core pfam01841
Transglutaminase-like superfamily; This family includes animal transglutaminases and other ...
 275-354 1.45e-19

Transglutaminase-like superfamily; This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.


:

Pssm-ID: 376628 [Multi-domain]  Cd Length: 108  Bit Score: 83.99  E-value: 1.45e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372840  275 AKEVEDHYCD--ACQFSNRFPRYNNPEKLLETRCGRCGEWANCFTLCCRAVGFEARYVWDYTD----------HVWTEVY 342
Cdd:pfam01841  18 ARAIYDYVRKniTYDLPGRSPGDGDAEEFLFTGKGDCEDFASLFVALLRALGIPARYVTGYLRgpdtvrggdaHAWVEVY 97

                          90
                  ....*....|..
gi 530372840  343 SPsQQRWLHCDA 354
Cdd:pfam01841  98 LP-GYGWVPVDP 108
Rad4 super family cl44506
Rad4 transglutaminase-like domain;
338-392 4.56e-06

Rad4 transglutaminase-like domain;


The actual alignment was detected with superfamily member pfam03835:

Pssm-ID: 427539 [Multi-domain]  Cd Length: 146  Bit Score: 46.63  E-value: 4.56e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530372840  338 WTEVYSPSQQRWLHCDACEDV------CDKPLLYEigwgKK---LSYVIAFSKDEVV-DVTWRYS 392
Cdd:pfam03835  39 WVEVFNPETKKWISVDPLVLKtielksKFEPRIAE----KAlnvMTYVVAFDSDGGAkDVTRRYC 99
 
Name Accession Description Interval E-value
PAW pfam04721
PNGase C-terminal domain, mannose-binding module PAW; The PAW domain is found at the ...
 416-596 4.91e-98

PNGase C-terminal domain, mannose-binding module PAW; The PAW domain is found at the C-terminus of PGNase, or peptide-N-glycanase, enzymes. It was named for 'domain present in PNGases and other worm proteins'. PNGase catalyzes the deglycosylation of several misfolded N-linked glycoproteins by cleaving off the bulky glycan chain before these proteins are degraded by the proteasome. PNGase specifically acts on the unfolded form of high-mannose type N-glycosylated proteins, and this domain appears to be the mannose-binding domain, which contributes to the oligosaccharide-binding specificity of PNGase.


Pssm-ID: 461409  Cd Length: 197  Bit Score: 296.88  E-value: 4.91e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372840  416 GLNKQRKETLFIPCENEKISKQLHLCYNIVKDRYVRVSNNNQTISGWENGVWKMESIFRKVETDWHMVYLARKEGSSFAY 495
Cdd:pfam04721  17 GSATQEKEFVFKPTEKEKKAKLFHLRYSIVKDIYTRVSNNNETIKGWESGVFSSENIFRKVEHDWKMVYLARTEGTSSGS 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372840  496 ISWKFECGSVGLKVDSISIRTSSQTFQTGTVEWKLRSDTAQVELTGDNSLHSYADFSGATEVILEAELSRGDGDVAWQHT 575
Cdd:pfam04721  97 ISWKFDLSSSGLKIKSISLKASSQTFESGKVSWRLQSDKTTVEIPGDKTLQSLSSLSGATELTLTAELSGGDGDVAWQHA 176

                         170       180
                  ....*....|....*....|.
gi 530372840  576 QLFRQSLNDHEENCLEIIIKF 596
Cdd:pfam04721 177 QLFRQSLDDTEEYSLEIIITL 197
PUB_PNGase cd10459
PNGase/UBA or UBX (PUB) domain of the P97 adaptor protein Peptide:N-glycanase (PNGase); This ...
 19-109 5.86e-51

PNGase/UBA or UBX (PUB) domain of the P97 adaptor protein Peptide:N-glycanase (PNGase); This PUB (PNGase/UBA or UBX) domain is found in the p97 adaptor protein PNGase (Peptide:N-glycanase). The PUB domain functions as a p97 (also known as valosin-containing protein or VCP) adaptor by interacting with the D1 and/or D2 ATPase domains. The type II AAA+ ATPase p97 is involved in a variety of cellular processes such as the deglycosylation of ERAD substrates, membrane fusion, transcription factor activation and cell cycle regulation through differential binding to specific adaptor proteins. Peptide:N-glycanase (PNGase), a deglycosylating enzyme that functions in proteasome-dependent degradation of misfolded glycoproteins which are translocated from the endoplasmic reticulum (ER) to the cytosol during ERAD, associates with the ubiquitin-proteasome system proteins mediated by the N-terminal PUB domain. PNGase is present in all eukaryotic organisms; however, the yeast PNGase ortholog does not contain the PUB domain. The mammalian PNGase binds a considerable number of proteins via its PUB domain; these include ERAD E3 enzyme, the autocrine motility factor receptor (AMFR or gp78), SAKS and Derlin-1.


Pssm-ID: 198417  Cd Length: 93  Bit Score: 170.53  E-value: 5.86e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372840  19 ELCQNTPETFLEASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQL 98
Cdd:cd10459    3 LLEENSEDVFLEASEALLTYANNILRNPNDPKYRSIRLDNPVFSTKLLPARGAIECLFEMGFVEDEDRLFLPRNASLEKL 82

                         90
                 ....*....|.
gi 530372840  99 QKIRDLIAIER 109
Cdd:cd10459   83 QDLRDLLAAER 93
PAW smart00613
domain present in PNGases and other hypothetical proteins; present in several copies in ...
 432-524 3.44e-26

domain present in PNGases and other hypothetical proteins; present in several copies in proteins with unknown function in C. elegans


Pssm-ID: 214745  Cd Length: 89  Bit Score: 102.35  E-value: 3.44e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372840   432 EKISKQLHLCYNIVKDRYVRVSNNNQTISGWEngVWKMESIFRKvETDWHMVYLARKEGSSFaYISWKFECGSVGLKVDS 511
Cdd:smart00613   1 ESGENYVKFTYDIINDTYSHTNEDGSPVQPYE--VKNIERVVDK-ELNEVYLHKKRPEEEGN-YIYWKFDLKSTGKSVEK 76

                           90
                   ....*....|...
gi 530372840   512 ISIRTSSQTFQTG 524
Cdd:smart00613  77 VVIRMSGIEEIAN 89
PUB pfam09409
PUB domain; The PUB (also known as PUG) domain is found in peptide N-glycanase where it ...
 26-103 7.20e-26

PUB domain; The PUB (also known as PUG) domain is found in peptide N-glycanase where it functions as a AAA ATPase binding domain. This domain is also found on other proteins linked to the ubiquitin-proteasome system.


Pssm-ID: 462790  Cd Length: 80  Bit Score: 101.19  E-value: 7.20e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530372840   26 ETFLEASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFE-EGETHLIFPKKASVEQLQKIRD 103
Cdd:pfam09409   2 EKVKEALETLLKYLNNILSNPNEEKYRKIRLSNKAFQEKVLPLEGALELLLAIGFEkEDEEEFLLLEEESLKQLAVLLE 80
Transglut_core pfam01841
Transglutaminase-like superfamily; This family includes animal transglutaminases and other ...
 275-354 1.45e-19

Transglutaminase-like superfamily; This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.


Pssm-ID: 376628 [Multi-domain]  Cd Length: 108  Bit Score: 83.99  E-value: 1.45e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372840  275 AKEVEDHYCD--ACQFSNRFPRYNNPEKLLETRCGRCGEWANCFTLCCRAVGFEARYVWDYTD----------HVWTEVY 342
Cdd:pfam01841  18 ARAIYDYVRKniTYDLPGRSPGDGDAEEFLFTGKGDCEDFASLFVALLRALGIPARYVTGYLRgpdtvrggdaHAWVEVY 97

                          90
                  ....*....|..
gi 530372840  343 SPsQQRWLHCDA 354
Cdd:pfam01841  98 LP-GYGWVPVDP 108
TGc smart00460
Transglutaminase/protease-like homologues; Transglutaminases are enzymes that establish ...
 301-355 2.49e-12

Transglutaminase/protease-like homologues; Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.


Pssm-ID: 214673  Cd Length: 68  Bit Score: 62.40  E-value: 2.49e-12
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530372840   301 LLETRCGRCGEWANCFTLCCRAVGFEARYVWDY--------------TDHVWTEVYSPsqQRWLHCDAC 355
Cdd:smart00460   1 LLKTKYGTCGEFAALFVALLRSLGIPARVVSGYlkapdtigglrsiwEAHAWAEVYLE--GGWVPVDPT 67
PUG smart00580
domain in protein kinases, N-glycanases and other nuclear proteins;
31-91 4.07e-12

domain in protein kinases, N-glycanases and other nuclear proteins;


Pssm-ID: 197798  Cd Length: 57  Bit Score: 61.16  E-value: 4.07e-12
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 530372840    31 ASKLLLTYADNILRNPNDEKyrsiriGNTAFSTRLLPVRGAVECLFEMGFE--EGETHLIFPK 91
Cdd:smart00580   1 SVRDLLRALRNILHHPREEK------GNPAIKERLGPVPGGFELYFTVGFPrlLISEVYTLPK 57
YebA COG1305
Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, ...
 275-354 2.19e-08

Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440916 [Multi-domain]  Cd Length: 174  Bit Score: 54.24  E-value: 2.19e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372840 275 AKEVEDHYCDACQFSNRFPRYN-NPEKLLETRCGRCGEWANCFTLCCRAVGFEARYVWDYT-------------DHVWTE 340
Cdd:COG1305   81 ARALYDWVRDNIRYDPGSTGVGtTALETLERRRGVCRDFAHLLVALLRALGIPARYVSGYLpgepppgggraddAHAWVE 160

                         90
                 ....*....|....
gi 530372840 341 VYSPsQQRWLHCDA 354
Cdd:COG1305  161 VYLP-GAGWVPFDP 173
Rad4 pfam03835
Rad4 transglutaminase-like domain;
338-392 4.56e-06

Rad4 transglutaminase-like domain;


Pssm-ID: 427539 [Multi-domain]  Cd Length: 146  Bit Score: 46.63  E-value: 4.56e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530372840  338 WTEVYSPSQQRWLHCDACEDV------CDKPLLYEigwgKK---LSYVIAFSKDEVV-DVTWRYS 392
Cdd:pfam03835  39 WVEVFNPETKKWISVDPLVLKtielksKFEPRIAE----KAlnvMTYVVAFDSDGGAkDVTRRYC 99
rad4 TIGR00605
DNA repair protein rad4; All proteins in this family for which functions are known are ...
 338-422 8.76e-03

DNA repair protein rad4; All proteins in this family for which functions are known are involved in targeting nucleotide excision repair to specific regions of the genome.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273170 [Multi-domain]  Cd Length: 713  Bit Score: 39.09  E-value: 8.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372840  338 WTEVYSPSQQRWLHCDA-------CEDVCDKPLlyeigwGKKLSYVIAFSKDEVV-DVTWRYsCKHEEVIARRTKVK--- 406
Cdd:TIGR00605 373 WVEVFIEQEEKWVCVDAvhsgvvpKGVTCFEPA------TLMMTYVFAYDRDGYVkDVTRRY-CDQWSTKVRKRRVEkad 445

                          90
                  ....*....|....*...
gi 530372840  407 --EALLRDTINGLNKQRK 422
Cdd:TIGR00605 446 fgETWFRPIFGALHKRKR 463
 
Name Accession Description Interval E-value
PAW pfam04721
PNGase C-terminal domain, mannose-binding module PAW; The PAW domain is found at the ...
 416-596 4.91e-98

PNGase C-terminal domain, mannose-binding module PAW; The PAW domain is found at the C-terminus of PGNase, or peptide-N-glycanase, enzymes. It was named for 'domain present in PNGases and other worm proteins'. PNGase catalyzes the deglycosylation of several misfolded N-linked glycoproteins by cleaving off the bulky glycan chain before these proteins are degraded by the proteasome. PNGase specifically acts on the unfolded form of high-mannose type N-glycosylated proteins, and this domain appears to be the mannose-binding domain, which contributes to the oligosaccharide-binding specificity of PNGase.


Pssm-ID: 461409  Cd Length: 197  Bit Score: 296.88  E-value: 4.91e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372840  416 GLNKQRKETLFIPCENEKISKQLHLCYNIVKDRYVRVSNNNQTISGWENGVWKMESIFRKVETDWHMVYLARKEGSSFAY 495
Cdd:pfam04721  17 GSATQEKEFVFKPTEKEKKAKLFHLRYSIVKDIYTRVSNNNETIKGWESGVFSSENIFRKVEHDWKMVYLARTEGTSSGS 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372840  496 ISWKFECGSVGLKVDSISIRTSSQTFQTGTVEWKLRSDTAQVELTGDNSLHSYADFSGATEVILEAELSRGDGDVAWQHT 575
Cdd:pfam04721  97 ISWKFDLSSSGLKIKSISLKASSQTFESGKVSWRLQSDKTTVEIPGDKTLQSLSSLSGATELTLTAELSGGDGDVAWQHA 176

                         170       180
                  ....*....|....*....|.
gi 530372840  576 QLFRQSLNDHEENCLEIIIKF 596
Cdd:pfam04721 177 QLFRQSLDDTEEYSLEIIITL 197
PUB_PNGase cd10459
PNGase/UBA or UBX (PUB) domain of the P97 adaptor protein Peptide:N-glycanase (PNGase); This ...
 19-109 5.86e-51

PNGase/UBA or UBX (PUB) domain of the P97 adaptor protein Peptide:N-glycanase (PNGase); This PUB (PNGase/UBA or UBX) domain is found in the p97 adaptor protein PNGase (Peptide:N-glycanase). The PUB domain functions as a p97 (also known as valosin-containing protein or VCP) adaptor by interacting with the D1 and/or D2 ATPase domains. The type II AAA+ ATPase p97 is involved in a variety of cellular processes such as the deglycosylation of ERAD substrates, membrane fusion, transcription factor activation and cell cycle regulation through differential binding to specific adaptor proteins. Peptide:N-glycanase (PNGase), a deglycosylating enzyme that functions in proteasome-dependent degradation of misfolded glycoproteins which are translocated from the endoplasmic reticulum (ER) to the cytosol during ERAD, associates with the ubiquitin-proteasome system proteins mediated by the N-terminal PUB domain. PNGase is present in all eukaryotic organisms; however, the yeast PNGase ortholog does not contain the PUB domain. The mammalian PNGase binds a considerable number of proteins via its PUB domain; these include ERAD E3 enzyme, the autocrine motility factor receptor (AMFR or gp78), SAKS and Derlin-1.


Pssm-ID: 198417  Cd Length: 93  Bit Score: 170.53  E-value: 5.86e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372840  19 ELCQNTPETFLEASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQL 98
Cdd:cd10459    3 LLEENSEDVFLEASEALLTYANNILRNPNDPKYRSIRLDNPVFSTKLLPARGAIECLFEMGFVEDEDRLFLPRNASLEKL 82

                         90
                 ....*....|.
gi 530372840  99 QKIRDLIAIER 109
Cdd:cd10459   83 QDLRDLLAAER 93
PAW smart00613
domain present in PNGases and other hypothetical proteins; present in several copies in ...
 432-524 3.44e-26

domain present in PNGases and other hypothetical proteins; present in several copies in proteins with unknown function in C. elegans


Pssm-ID: 214745  Cd Length: 89  Bit Score: 102.35  E-value: 3.44e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372840   432 EKISKQLHLCYNIVKDRYVRVSNNNQTISGWEngVWKMESIFRKvETDWHMVYLARKEGSSFaYISWKFECGSVGLKVDS 511
Cdd:smart00613   1 ESGENYVKFTYDIINDTYSHTNEDGSPVQPYE--VKNIERVVDK-ELNEVYLHKKRPEEEGN-YIYWKFDLKSTGKSVEK 76

                           90
                   ....*....|...
gi 530372840   512 ISIRTSSQTFQTG 524
Cdd:smart00613  77 VVIRMSGIEEIAN 89
PUB pfam09409
PUB domain; The PUB (also known as PUG) domain is found in peptide N-glycanase where it ...
 26-103 7.20e-26

PUB domain; The PUB (also known as PUG) domain is found in peptide N-glycanase where it functions as a AAA ATPase binding domain. This domain is also found on other proteins linked to the ubiquitin-proteasome system.


Pssm-ID: 462790  Cd Length: 80  Bit Score: 101.19  E-value: 7.20e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530372840   26 ETFLEASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFE-EGETHLIFPKKASVEQLQKIRD 103
Cdd:pfam09409   2 EKVKEALETLLKYLNNILSNPNEEKYRKIRLSNKAFQEKVLPLEGALELLLAIGFEkEDEEEFLLLEEESLKQLAVLLE 80
PUB cd09212
PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor ...
 21-105 3.88e-25

PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor proteins such as PNGase, UBXD1 (UBX domain-containing protein 1), and RNF31 (RING finger protein 31). It functions as a p97 (also known as valosin-containing protein or VCP) adaptor by interacting with the D1 and/or D2 ATPase domains. The p97, a type II AAA+ ATPase, is involved in a variety of cellular processes such as the deglycosylation of ERAD substrates, membrane fusion, transcription factor activation and cell cycle regulation through differential binding to specific adaptor proteins. The PUB domain in UBX-domain protein 1 (UBXD1), which is widely expressed in higher eukaryotes (except for fungi) and which is involved in substrate recruitment to p97, interacts strongly with the C-terminus of p97. Peptide:N-glycanase (PNGase), a deglycosylating enzyme that functions in proteasome-dependent degradation of misfolded glycoproteins which are translocated from the endoplasmic reticulum (ER) to the cytosol during ERAD, associates with the ubiquitin-proteasome system proteins mediated by the N-terminal PUB domain. PNGase is present in all eukaryotic organisms; however, the yeast PNGase ortholog does not contain the PUB domain. The RNF31 protein, also known as HOIP or Zibra, contains an N-terminal PUB domain similar to those in PNGase and UBXD1, suggesting its association with p97.


Pssm-ID: 198416  Cd Length: 96  Bit Score: 99.76  E-value: 3.88e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372840  21 CQNTPETFLEASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEE----GETHLIFPKKASVE 96
Cdd:cd09212    6 SNNDLEAFKEALKTLLKILDNILSNPTEEKYRRIRLSNKAFQEKVLPVPGGLELLLALGFVEetesGESFLVLPDDADVD 85


                 ....*....
gi 530372840  97 QLQKIRDLI 105
Cdd:cd09212   86 LLKDAKAAL 94
Transglut_core pfam01841
Transglutaminase-like superfamily; This family includes animal transglutaminases and other ...
 275-354 1.45e-19

Transglutaminase-like superfamily; This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.


Pssm-ID: 376628 [Multi-domain]  Cd Length: 108  Bit Score: 83.99  E-value: 1.45e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372840  275 AKEVEDHYCD--ACQFSNRFPRYNNPEKLLETRCGRCGEWANCFTLCCRAVGFEARYVWDYTD----------HVWTEVY 342
Cdd:pfam01841  18 ARAIYDYVRKniTYDLPGRSPGDGDAEEFLFTGKGDCEDFASLFVALLRALGIPARYVTGYLRgpdtvrggdaHAWVEVY 97

                          90
                  ....*....|..
gi 530372840  343 SPsQQRWLHCDA 354
Cdd:pfam01841  98 LP-GYGWVPVDP 108
PUB_UBXD1 cd10460
PNGase/UBA or UBX (PUB) domain of UBXD1; This PUB domain is found in p97 adaptor protein ...
 30-105 2.52e-16

PNGase/UBA or UBX (PUB) domain of UBXD1; This PUB domain is found in p97 adaptor protein UBXD1 (UBX domain-containing protein 1, also called UBXD6). It functions as a p97 (also known as valosin-containing protein or VCP) adaptor by interacting with the D1 and/or D2 ATPase domains. The type II AAA+ ATPase p97 is involved in a variety of cellular processes such as the deglycosylation of ERAD substrates, membrane fusion, transcription factor activation and cell cycle regulation through differential binding to specific adaptor proteins. The PUB domain in UBX-domain protein 1 (UBXD1), which is widely expressed in higher eukaryotes, except for fungi, and which is involved in substrate recruitment to p97, interacts strongly with the C-terminus of p97. UBXD1 also interacts with HRD1 and HERP, both components of the ERAD pathway, via p97. It is possibly involved in aggresome formation; aggresomes are perinuclear compartments that contain misfolded proteins colocalized with centrosome markers.


Pssm-ID: 198418  Cd Length: 102  Bit Score: 74.59  E-value: 2.52e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372840  30 EASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEE--------GETHLIFPKKASVEQLQKI 101
Cdd:cd10460   16 ECVDTLCKYLENIIDHPDEEKYRKIRLSNKVFQEKVLPVEGALEFLEAAGFEEktlpeqedEEDFLVLSEECDIDSLELA 95


                 ....
gi 530372840 102 RDLI 105
Cdd:cd10460   96 KDLL 99
TGc smart00460
Transglutaminase/protease-like homologues; Transglutaminases are enzymes that establish ...
 301-355 2.49e-12

Transglutaminase/protease-like homologues; Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.


Pssm-ID: 214673  Cd Length: 68  Bit Score: 62.40  E-value: 2.49e-12
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530372840   301 LLETRCGRCGEWANCFTLCCRAVGFEARYVWDY--------------TDHVWTEVYSPsqQRWLHCDAC 355
Cdd:smart00460   1 LLKTKYGTCGEFAALFVALLRSLGIPARVVSGYlkapdtigglrsiwEAHAWAEVYLE--GGWVPVDPT 67
PUG smart00580
domain in protein kinases, N-glycanases and other nuclear proteins;
31-91 4.07e-12

domain in protein kinases, N-glycanases and other nuclear proteins;


Pssm-ID: 197798  Cd Length: 57  Bit Score: 61.16  E-value: 4.07e-12
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 530372840    31 ASKLLLTYADNILRNPNDEKyrsiriGNTAFSTRLLPVRGAVECLFEMGFE--EGETHLIFPK 91
Cdd:smart00580   1 SVRDLLRALRNILHHPREEK------GNPAIKERLGPVPGGFELYFTVGFPrlLISEVYTLPK 57
PUB_UBA_plant cd10461
PNGase/UBA or UBX (PUB) domain of plant Ubiquitin-associated (UBA) domain containing proteins; ...
 25-91 1.46e-11

PNGase/UBA or UBX (PUB) domain of plant Ubiquitin-associated (UBA) domain containing proteins; The PUB domain functions as a p97 (also known as valosin-containing protein or VCP) adaptor by interacting with the D1 and/or D2 ATPase domains. The type II AAA+ ATPase p97 is involved in a variety of cellular processes such as the deglycosylation of ERAD substrates, membrane fusion, transcription factor activation and cell cycle regulation through differential binding to specific adaptor proteins. The UBA domain, along with UBL (ubiquitin-like) domain, has been implicated in proteasomal degradation by associating with substrates destined for degradation as well as with subunits of the proteasome, thus regulating protein turnover. This family contains only plant UBA domain-containing proteins.


Pssm-ID: 198419  Cd Length: 107  Bit Score: 61.29  E-value: 1.46e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530372840  25 PETFLEASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFE--EGETHLIFPK 91
Cdd:cd10461   12 PDAVKTAFQTLLTYLGNVAKNPDEEKFRRIRLTNAAFQERVGALRGGIEFLELCGFErdEGDEALVLPR 80
PUB_WLM cd10463
PNGase/UBA or UBX (PUB) domain of the Wss1p-like metalloprotease (WLM) family; The PUB domain ...
 22-83 2.55e-10

PNGase/UBA or UBX (PUB) domain of the Wss1p-like metalloprotease (WLM) family; The PUB domain functions as a p97 (also known as valosin-containing protein or VCP) adaptor by interacting with the D1 and/or D2 ATPase domains. The type II AAA+ ATPase p97 is involved in a variety of cellular processes such as the deglycosylation of ERAD substrates, membrane fusion, transcription factor activation and cell cycle regulation through differential binding to specific adaptor proteins. WLM domains are found mostly in plant proteins, belonging to the Zincin-like superfamily of Zn-dependent peptidases that are linked to the ubiquitin signaling pathway through its fusion with the ubiquitin-binding PUB, ubiquitin-like, and Little Finger domains. More specifically, genetic evidence implicates the WLM family in de-SUMOylation.


Pssm-ID: 198421  Cd Length: 96  Bit Score: 57.40  E-value: 2.55e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 530372840  22 QNTPETFLEASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEEG 83
Cdd:cd10463    8 AVSPAEAVSALQTLFKILGNAIEHPNEDKFRRLRKSNPAFQRRVARFPGAVELLLAAGFAEE 69
YebA COG1305
Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, ...
 275-354 2.19e-08

Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440916 [Multi-domain]  Cd Length: 174  Bit Score: 54.24  E-value: 2.19e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372840 275 AKEVEDHYCDACQFSNRFPRYN-NPEKLLETRCGRCGEWANCFTLCCRAVGFEARYVWDYT-------------DHVWTE 340
Cdd:COG1305   81 ARALYDWVRDNIRYDPGSTGVGtTALETLERRRGVCRDFAHLLVALLRALGIPARYVSGYLpgepppgggraddAHAWVE 160

                         90
                 ....*....|....
gi 530372840 341 VYSPsQQRWLHCDA 354
Cdd:COG1305  161 VYLP-GAGWVPFDP 173
PUB_UBA cd10462
PNGase/UBA or UBX (PUB) domain of Ubiquitin-associated (UBA) domain containing proteins; The ...
 26-92 2.81e-08

PNGase/UBA or UBX (PUB) domain of Ubiquitin-associated (UBA) domain containing proteins; The PUB domain functions as a p97 (also known as valosin-containing protein or VCP) adaptor by interacting with the D1 and/or D2 ATPase domains. The type II AAA+ ATPase p97 is involved in a variety of cellular processes such as the deglycosylation of ERAD substrates, membrane fusion, transcription factor activation and cell cycle regulation through differential binding to specific adaptor proteins. The UBA domain, along with UBL (ubiquitin-like) domain, has been implicated in proteasomal degradation by associating with substrates destined for degradation as well as with subunits of the proteasome, thus regulating protein turnover.


Pssm-ID: 198420  Cd Length: 100  Bit Score: 51.72  E-value: 2.81e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530372840  26 ETFLEASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKK 92
Cdd:cd10462   14 QGLMTCLNTLRTYISNAHDHPLEEKYKKIRKENKAFVSKVLIFEGAIEILLACGFEDTGDFLFIINK 80
Rad4 pfam03835
Rad4 transglutaminase-like domain;
338-392 4.56e-06

Rad4 transglutaminase-like domain;


Pssm-ID: 427539 [Multi-domain]  Cd Length: 146  Bit Score: 46.63  E-value: 4.56e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530372840  338 WTEVYSPSQQRWLHCDACEDV------CDKPLLYEigwgKK---LSYVIAFSKDEVV-DVTWRYS 392
Cdd:pfam03835  39 WVEVFNPETKKWISVDPLVLKtielksKFEPRIAE----KAlnvMTYVVAFDSDGGAkDVTRRYC 99
rad4 TIGR00605
DNA repair protein rad4; All proteins in this family for which functions are known are ...
 338-422 8.76e-03

DNA repair protein rad4; All proteins in this family for which functions are known are involved in targeting nucleotide excision repair to specific regions of the genome.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273170 [Multi-domain]  Cd Length: 713  Bit Score: 39.09  E-value: 8.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530372840  338 WTEVYSPSQQRWLHCDA-------CEDVCDKPLlyeigwGKKLSYVIAFSKDEVV-DVTWRYsCKHEEVIARRTKVK--- 406
Cdd:TIGR00605 373 WVEVFIEQEEKWVCVDAvhsgvvpKGVTCFEPA------TLMMTYVFAYDRDGYVkDVTRRY-CDQWSTKVRKRRVEkad 445

                          90
                  ....*....|....*...
gi 530372840  407 --EALLRDTINGLNKQRK 422
Cdd:TIGR00605 446 fgETWFRPIFGALHKRKR 463
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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