|
Name |
Accession |
Description |
Interval |
E-value |
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
28-774 |
0e+00 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 1008.48 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 28 LGGDSTFFKSFNKCTEDDFEFPFAKTNLSKNGENIDSDPALQKVNFLPVLEQ-------------------NSEGLSRVY 88
Cdd:pfam05483 1 AGGDSNFFKSFNKCTEDDFEFPFAKSNLSKNGENIDSDPAFQKLNFLPMLEQvansgdchyqeglkdsdfeNSEGLSRLY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 89 SKLYKEAEKIKKWKVSTEAELRQKESKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLL 168
Cdd:pfam05483 81 SKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 169 KETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMITAFEELRVQAENSRLEMHFKLKEDYEKIQHLEQEYKKEINDKEK 248
Cdd:pfam05483 161 KETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 249 QVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQ 328
Cdd:pfam05483 241 QVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQ 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 329 IATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLT 408
Cdd:pfam05483 321 IATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 409 NNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTEL 488
Cdd:pfam05483 401 NNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTEL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 489 ENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQK 568
Cdd:pfam05483 481 EKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQK 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 569 RDEVKCKLDKSEEN---------------------CNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNK 627
Cdd:pfam05483 561 GDEVKCKLDKSEENarsieyevlkkekqmkilenkCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNK 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 628 LELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKII 707
Cdd:pfam05483 641 LELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKII 720
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530363230 708 EERDSELGLYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKK 774
Cdd:pfam05483 721 EERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKDKK 787
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
92-773 |
1.90e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.71 E-value: 1.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 92 YKEAEKIKKWKVSTeAELRQKESKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLKET 171
Cdd:TIGR02168 218 LKAELRELELALLV-LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 172 CARsAEKTKKYEYEREEtrqvymdlnnNIEKMITAFEELRVQAENSRLEmhfkLKEDYEKIQHLEQEYKKEINDKEKQVS 251
Cdd:TIGR02168 297 ISR-LEQQKQILRERLA----------NLERQLEELEAQLEELESKLDE----LAEELAELEEKLEELKEELESLEAELE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 252 LLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQsiekqhhLTKELEDIKVSLQRSVSTQKALEEDLQIAT 331
Cdd:TIGR02168 362 ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER-------LEARLERLEDRRERLQQEIEELLKKLEEAE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 332 KTICQLTEEKETQMEEsnkaraahsfvvtEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNK 411
Cdd:TIGR02168 435 LKELQAELEELEEELE-------------ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 412 EVELEELKKVLGEK------------------------ETLLYENKQ---------FEKIAEELKGTEQELIGLLQAREK 458
Cdd:TIGR02168 502 EGFSEGVKALLKNQsglsgilgvlselisvdegyeaaiEAALGGRLQavvvenlnaAKKAIAFLKQNELGRVTFLPLDSI 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 459 EVHDLEIQLTAITTSEQYYSKEVKDL-KTELENEKLKN---------TELTSHCNKLSLENKELT--------------- 513
Cdd:TIGR02168 582 KGTEIQGNDREILKNIEGFLGVAKDLvKFDPKLRKALSyllggvlvvDDLDNALELAKKLRPGYRivtldgdlvrpggvi 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 514 ---------------QETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELeyvrEELKQKRDEVKCKLDK 578
Cdd:TIGR02168 662 tggsaktnssilerrREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL----EELSRQISALRKDLAR 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 579 SEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEE 658
Cdd:TIGR02168 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 659 NLLEEVEKAKVIADEAVKLQKEID------KRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLE 732
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEdleeqiEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 530363230 733 I----------ELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEK 773
Cdd:TIGR02168 898 ElseelrelesKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
53-699 |
7.33e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 72.84 E-value: 7.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 53 TNLSKNGENIDSDPALQKVNFLPVLEQ----NSEGLSRVYSKLYKEAEKIKKWKVSTEAE---LRQKESKLQENRKIIEA 125
Cdd:pfam15921 220 SAISKILRELDTEISYLKGRIFPVEDQlealKSESQNKIELLLQQHQDRIEQLISEHEVEitgLTEKASSARSQANSIQS 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 126 QRKAIQELQFGNEKVSLK----LEEGIQENKDLIKENNATRH--LCNLLKETCARSAEKTKKyEYEREETRQVYMDLNNN 199
Cdd:pfam15921 300 QLEIIQEQARNQNSMYMRqlsdLESTVSQLRSELREAKRMYEdkIEELEKQLVLANSELTEA-RTERDQFSQESGNLDDQ 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 200 IEKMITafeelrvqaensrlEMHFKLKEdyekiQHLEQEYKKEINDKEKQVSL----LLIQITEKENKMKDLTFLLEESR 275
Cdd:pfam15921 379 LQKLLA--------------DLHKREKE-----LSLEKEQNKRLWDRDTGNSItidhLRRELDDRNMEVQRLEALLKAMK 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 276 DKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTeekeTQMEESNKARAAH 355
Cdd:pfam15921 440 SECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLT----ASLQEKERAIEAT 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 356 SFVVTEFETTVcsleELLRTEQQRLEKNEDQLKiltmelqkksseleemtkltnNKEVELEELKKVLGEKETLLYENKQF 435
Cdd:pfam15921 516 NAEITKLRSRV----DLKLQELQHLKNEGDHLR---------------------NVQTECEALKLQMAEKDKVIEILRQQ 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 436 EKIAEELKGTEQELIGLLQAR----EKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKE 511
Cdd:pfam15921 571 IENMTQLVGQHGRTAGAMQVEkaqlEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKD 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 512 LTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQE----TETQLRNELEYVREELKQKRDEVKcKLDKSEENCNN-- 585
Cdd:pfam15921 651 IKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEemetTTNKLKMQLKSAQSELEQTRNTLK-SMEGSDGHAMKva 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 586 --LRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDtyqkEIEDKKISEENLLEE 663
Cdd:pfam15921 730 mgMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAG----ELEVLRSQERRLKEK 805
|
650 660 670
....*....|....*....|....*....|....*.
gi 530363230 664 VEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKH 699
Cdd:pfam15921 806 VANMEVALDKASLQFAECQDIIQRQEQESVRLKLQH 841
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
224-776 |
3.76e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.48 E-value: 3.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 224 KLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEkTKLQSENLKQSIEKQHHLT 303
Cdd:PRK03918 176 RRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-LKEEIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 304 KELEDIKVSLQRSVSTQKALEEDLQIATKTICQLtEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEkn 383
Cdd:PRK03918 255 RKLEEKIRELEERIEELKKEIEELEEKVKELKEL-KEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK-- 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 384 edqlkiltmELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKG-TEQELIGLLQAREKEVHD 462
Cdd:PRK03918 332 ---------ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGlTPEKLEKELEELEKAKEE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 463 LEIQLTAITTSEQYYSKEVKDLKTELEneklkntELTSHCNKLSLENKELTQE-----TSDMTLELKNQQEDINNNKKQE 537
Cdd:PRK03918 403 IEEEISKITARIGELKKEIKELKKAIE-------ELKKAKGKCPVCGRELTEEhrkelLEEYTAELKRIEKELKEIEEKE 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 538 ERM---LKQIENLQETETQLRNELEyVREELKQKRDEVK-CKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTA 613
Cdd:PRK03918 476 RKLrkeLRELEKVLKKESELIKLKE-LAEQLKELEEKLKkYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 614 ESKqLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIdKRCQHKIAEMV 693
Cdd:PRK03918 555 KKK-LAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKEL-KKLEEELDKAF 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 694 ALMEKHKHQYDKIIEERDSELGLYKSKEQEQ-SSLRASLEIELSNLKAELlsvkKQLEIEREEKEKLKREAKENTATLKE 772
Cdd:PRK03918 633 EELAETEKRLEELRKELEELEKKYSEEEYEElREEYLELSRELAGLRAEL----EELEKRREEIKKTLEKLKEELEEREK 708
|
....
gi 530363230 773 KKDK 776
Cdd:PRK03918 709 AKKE 712
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
168-490 |
4.96e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 4.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 168 LKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMITAFEELRVQAENsrlemhfkLKEDYEKIQHLEQEYKKEINDKE 247
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA--------LRKDLARLEAEVEQLEERIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 248 KQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDL 327
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 328 QIATKTICQLTEEKETQMEEsnkaraahsfvvtefettVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKL 407
Cdd:TIGR02168 834 AATERRLEDLEEQIEELSED------------------IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 408 TNNKEVELEELKKVLGEKETLLYE-NKQFEKIAEELKGTEQELIGLL-QAREKEVHDLEIQLT---AITTSEQYYSKEVK 482
Cdd:TIGR02168 896 LEELSEELRELESKRSELRRELEElREKLAQLELRLEGLEVRIDNLQeRLSEEYSLTLEEAEAlenKIEDDEEEARRRLK 975
|
....*...
gi 530363230 483 DLKTELEN 490
Cdd:TIGR02168 976 RLENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
433-734 |
1.67e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 1.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 433 KQFEKIAEELKGTEQELIGL-LQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKE 511
Cdd:COG1196 213 ERYRELKEELKELEAELLLLkLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 512 LTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELeyvrEELKQKRDEVKCKLDKSEENCNNLRKQVE 591
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL----EELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 592 NKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQkfgeitdtyqkEIEDKKISEENLLEEVEKAKVIA 671
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE-----------RLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 530363230 672 DEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLEIE 734
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
440-750 |
2.31e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 2.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 440 EELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDM 519
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 520 TLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEV---KCKLDKSEENCNNLRKQVENKNKY 596
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtllNEEAANLRERLESLERRIAATERR 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 597 IEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAkqkfgeiTDTYQKEIEDKKISEENLLEEVEKAKVIADEAVK 676
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL-------LNERASLEEALALLRSELEELSEELRELESKRSE 912
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 530363230 677 LQKEIDkRCQHKIAEMVALMEKHKHQYDKIIEERDSElglYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLE 750
Cdd:TIGR02168 913 LRRELE-ELREKLAQLELRLEGLEVRIDNLQERLSEE---YSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
92-819 |
2.48e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 68.24 E-value: 2.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 92 YKEAEKIKKWKVSTEAELRQKESKLQENRKIIEAQRK--AIQELQFGNEKVSLKLEEgiQENKDLIKENNATRHLCNLLK 169
Cdd:PTZ00121 1220 AEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKfeEARMAHFARRQAAIKAEE--ARKADELKKAEEKKKADEAKK 1297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 170 ETCARSAEKTKKYEYEREETRQvymdLNNNIEKMITAFEELRVQAENSRLEMHFKLKEDYEKIQHLEQEYKKEINDKEKQ 249
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADE----AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 250 vsllliqiTEKENKMKDLTFLLEESR--DKVNQLEEKTKLQSENLKQSIE---KQHHLTKELEDIKVSLQRSVSTQKALE 324
Cdd:PTZ00121 1374 --------EEAKKKADAAKKKAEEKKkaDEAKKKAEEDKKKADELKKAAAakkKADEAKKKAEEKKKADEAKKKAEEAKK 1445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 325 EDLQIATKTICQLTEEKETQMEESNKARAAHSfvvtefettvcSLEELLRTEQqrLEKNEDQLKILTMELQKKSSELEEM 404
Cdd:PTZ00121 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKK-----------KAEEAKKADE--AKKKAEEAKKKADEAKKAAEAKKKA 1512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 405 TKLTNNKEV-ELEELKKVLGEKETLLYENKQFEKIAEELKGTEQ----ELIGLLQAREKEVHDLEIQLTAITTSEQYYSK 479
Cdd:PTZ00121 1513 DEAKKAEEAkKADEAKKAEEAKKADEAKKAEEKKKADELKKAEElkkaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 480 EVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETsdmtlELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELE 559
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE-----EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEA 1667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 560 YVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKyIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKF 639
Cdd:PTZ00121 1668 KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK-AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKA 1746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 640 GEITdtyQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIE-ERDSELGLYK 718
Cdd:PTZ00121 1747 EEAK---KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEgGKEGNLVIND 1823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 719 SKEQEQSSLRasleiELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTF--LLETPEIYwKLDSKA 796
Cdd:PTZ00121 1824 SKEMEDSAIK-----EVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEeeIEEADEIE-KIDKDD 1897
|
730 740
....*....|....*....|...
gi 530363230 797 VPSQTVSRNFTSVDHGISKDKRD 819
Cdd:PTZ00121 1898 IEREIPNNNMAGKNNDIIDDKLD 1920
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
237-784 |
6.99e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.50 E-value: 6.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 237 QEYKKEIndKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRS 316
Cdd:COG1196 216 RELKEEL--KELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 317 VSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETtvcsLEELLRTEQQRLEKNEDQLKILTMELQK 396
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEE----LEEELEEAEEELEEAEAELAEAEEALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 397 KSSELEEmtkltnnkevELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQY 476
Cdd:COG1196 370 AEAELAE----------AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 477 YSKEVKDLKTELENEKLKNTELTshcnKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQET--ETQL 554
Cdd:COG1196 440 EEEALEEAAEEEAELEEEEEALL----ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvkAALL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 555 RNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAEskqlnvyeikvnklELELES 634
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT--------------FLPLDK 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 635 AKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHK--HQYDKIIEERDS 712
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRevTLEGEGGSAGGS 661
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 530363230 713 ELGLYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTFLLE 784
Cdd:COG1196 662 LTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
105-776 |
1.67e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 65.38 E-value: 1.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 105 TEAELRQKESKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEY 184
Cdd:pfam02463 193 EELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 185 EREETRQVYMDLNNNIEKMITAFEELRVQAENSRLEMHF------KLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQIT 258
Cdd:pfam02463 273 ENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDdeeklkESEKEKKKAEKELKKEKEEIEELEKELKELEIKRE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 259 EKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKqhhLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLT 338
Cdd:pfam02463 353 AEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKL---KEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEEL 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 339 EEKETQMEESNKARAAHSFVVTEFETT---------VCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTN 409
Cdd:pfam02463 430 EILEEEEESIELKQGKLTEEKEELEKQelkllkdelELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGL 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 410 NKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELE 489
Cdd:pfam02463 510 KVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKL 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 490 NEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQ-QEDINNNKKQEERMLKQIENLQETETQLRNELEYVR-----E 563
Cdd:pfam02463 590 PLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEgILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEvkaslS 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 564 ELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEIT 643
Cdd:pfam02463 670 ELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEE 749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 644 DTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQK---EIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSK 720
Cdd:pfam02463 750 EEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKlkvEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEK 829
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 530363230 721 EQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDK 776
Cdd:pfam02463 830 IKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLK 885
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
181-776 |
1.05e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 1.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 181 KYEYEREETRQVYMDLNNNIEKMITAFEELRVQAEN-----SRLEMHFKLKEDYEKIQHL-----EQEYKKEINDKEKQV 250
Cdd:TIGR02168 169 KYKERRKETERKLERTRENLDRLEDILNELERQLKSlerqaEKAERYKELKAELRELELAllvlrLEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 251 SLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQ-- 328
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEel 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 329 -----IATKTICQLTEEKETQMEESNKARAAHS---FVVTEFETTVCSLEELLRTEQQ--------------RLEKNEDQ 386
Cdd:TIGR02168 329 eskldELAEELAELEEKLEELKEELESLEAELEeleAELEELESRLEELEEQLETLRSkvaqlelqiaslnnEIERLEAR 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 387 LKILTMELQKKSSELEEMtkLTNNKEVELEELKKVLGEK----ETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHD 462
Cdd:TIGR02168 409 LERLEDRRERLQQEIEEL--LKKLEEAELKELQAELEELeeelEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 463 LEIQLTAITTSEQYYSKEVKDLKTELEN---------------------EKLKNTELTSHCNKLSLENKE--------LT 513
Cdd:TIGR02168 487 LQARLDSLERLQENLEGFSEGVKALLKNqsglsgilgvlselisvdegyEAAIEAALGGRLQAVVVENLNaakkaiafLK 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 514 QETSD--MTLELKNQ-----QEDINNNKKQEERMLKQIENLQETETQLRNELEY-------------------------- 560
Cdd:TIGR02168 567 QNELGrvTFLPLDSIkgteiQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYllggvlvvddldnalelakklrpgyr 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 561 ------------------------VREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESK 616
Cdd:TIGR02168 647 ivtldgdlvrpggvitggsaktnsSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 617 QLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKrcqhkiaemvalM 696
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ------------L 794
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 697 EKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDK 776
Cdd:TIGR02168 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE 874
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
84-782 |
1.37e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 1.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 84 LSRVYSKLYKEAEKIKKWKVSTEAELRQKESKLQENRKIIEAQRKAIQELqfgNEKVSLKLEEGIQENKDLIKENNATRH 163
Cdd:TIGR02169 228 LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEEL---NKKIKDLGEEEQLRVKEKIGELEAEIA 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 164 LCN----LLKETCARSAEKTKKYEYEREETRQVYMDLNNNIE-------KMITAFEELRVQAENSRLEMH---FKLKEDY 229
Cdd:TIGR02169 305 SLErsiaEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEeerkrrdKLTEEYAELKEELEDLRAELEevdKEFAETR 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 230 EKIQHLEQE---YKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKEL 306
Cdd:TIGR02169 385 DELKDYREKlekLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 307 EDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQ-------- 378
Cdd:TIGR02169 465 SKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERyataieva 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 379 ---RLE----KNEDQLKILTMELqkKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYE------NKQFEK-------- 437
Cdd:TIGR02169 545 agnRLNnvvvEDDAVAKEAIELL--KRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAvdlvefDPKYEPafkyvfgd 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 438 --IAEELKGTEQELIGL-LQAREKEV----------HDLEIQLTAITTSEQYYSKEVKDLKTELENEKlknTELTSHCNK 504
Cdd:TIGR02169 623 tlVVEDIEAARRLMGKYrMVTLEGELfeksgamtggSRAPRGGILFSRSEPAELQRLRERLEGLKREL---SSLQSELRR 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 505 LSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELkqkrDEVKCKLDKSEENCN 584
Cdd:TIGR02169 700 IENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSEL----KELEARIEELEEDLH 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 585 NLRKQVEN-----KNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITD----------TYQKE 649
Cdd:TIGR02169 776 KLEEALNDlearlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEqridlkeqikSIEKE 855
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 650 IEDKKISEENLLEEVEKAKV----IADEAVKLQKEIDKR------CQHKIAEMVALMEKHKHQYD------KIIEERDSE 713
Cdd:TIGR02169 856 IENLNGKKEELEEELEELEAalrdLESRLGDLKKERDELeaqlreLERKIEELEAQIEKKRKRLSelkaklEALEEELSE 935
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 714 LGLYKSKEQEQSSLRASLE---------------IELSNLKA--ELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDK 776
Cdd:TIGR02169 936 IEDPKGEDEEIPEEELSLEdvqaelqrveeeiraLEPVNMLAiqEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
....*.
gi 530363230 777 KTQTFL 782
Cdd:TIGR02169 1016 KREVFM 1021
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
176-489 |
1.76e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.01 E-value: 1.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 176 AEKTKKYEYEREETRQVymdlNNNIEKMITAFEELRVQAEnsRLEMHFKLKEDYEKIQHLEQEYK-----KEINDKEKQV 250
Cdd:TIGR02169 166 AEFDRKKEKALEELEEV----EENIERLDLIIDEKRQQLE--RLRREREKAERYQALLKEKREYEgyellKEKEALERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 251 SLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQ-SIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQI 329
Cdd:TIGR02169 240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDlGEEEQLRVKEKIGELEAEIASLERSIAEKERELED 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 330 ATKTICQLTEE---KETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEemtK 406
Cdd:TIGR02169 320 AEERLAKLEAEidkLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE---K 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 407 LTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKT 486
Cdd:TIGR02169 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476
|
...
gi 530363230 487 ELE 489
Cdd:TIGR02169 477 EYD 479
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
337-638 |
7.59e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 7.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 337 LTEEKETQMEE-SNKARAAHSFVVTEFETTVCSLEELLRteqqRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVEL 415
Cdd:COG1196 194 ILGELERQLEPlERQAEKAERYRELKEELKELEAELLLL----KLRELEAELEELEAELEELEAELEELEAELAELEAEL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 416 EELKKVLGEKETLLyenkqfekiaEELKGTEQELI-------GLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTEL 488
Cdd:COG1196 270 EELRLELEELELEL----------EEAQAEEYELLaelarleQDIARLEERRRELEERLEELEEELAELEEELEELEEEL 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 489 ENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYV---REEL 565
Cdd:COG1196 340 EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALlerLERL 419
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 530363230 566 KQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQK 638
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
196-708 |
1.08e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.26 E-value: 1.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 196 LNNNIEKMITAFEELRVQAENSRLEMHfKLKEDYEKIQHLEQEYKKEINDKEkqvsLLLIQITEKENKMKDLTFLLEESR 275
Cdd:TIGR04523 150 KEKELEKLNNKYNDLKKQKEELENELN-LLEKEKLNIQKNIDKIKNKLLKLE----LLLSNLKKKIQKNKSLESQISELK 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 276 DKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEE-KETQMEESNKARAA 354
Cdd:TIGR04523 225 KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQlNQLKSEISDLNNQK 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 355 HSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEE----LKKVLGEKETLLY 430
Cdd:TIGR04523 305 EQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEkqneIEKLKKENQSYKQ 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 431 ENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENK 510
Cdd:TIGR04523 385 EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRE 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 511 ELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVRE-------------------ELKQKRDE 571
Cdd:TIGR04523 465 SLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKkisslkekieklesekkekESKISDLE 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 572 VKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYqKEIE 651
Cdd:TIGR04523 545 DELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKEL-EKAK 623
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 530363230 652 DKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIE 708
Cdd:TIGR04523 624 KENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIE 680
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
88-645 |
1.48e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.88 E-value: 1.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 88 YSKLYKEAEKIKKWKVSTEAELRQKESKLQENRKIIEAQRKAIQELqfgnEKVSLKLEEGIQENKDLIKENNATRHLCNL 167
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEEL----ENELNLLEKEKLNIQKNIDKIKNKLLKLEL 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 168 LKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMITAFEELRVQAENSRLEMHfKLKEDYEKIQHLEQEYKKEINDKE 247
Cdd:TIGR04523 202 LLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLN-QLKDEQNKIKKQLSEKQKELEQNN 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 248 KQVSLLLIQITEKENKMKDLTFLLEESRDKV------NQLEEKTKLQSEnLKQSIEKQHHLTKELEDIKVSLQRSVSTQK 321
Cdd:TIGR04523 281 KKIKELEKQLNQLKSEISDLNNQKEQDWNKElkselkNQEKKLEEIQNQ-ISQNNKIISQLNEQISQLKKELTNSESENS 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 322 ALEEDLQIATKTICQLTEEKETQMEESNKaraahsfvvteFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSEL 401
Cdd:TIGR04523 360 EKQRELEEKQNEIEKLKKENQSYKQEIKN-----------LESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEI 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 402 EEMTKLTNNKEVELEELKKVLGEKETLLyenKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEV 481
Cdd:TIGR04523 429 ERLKETIIKNNSEIKDLTNQDSVKELII---KNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEK 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 482 KDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQeermlKQIENLQETETQLRNEleyv 561
Cdd:TIGR04523 506 KELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLE-----KEIDEKNKEIEELKQT---- 576
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 562 REELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGE 641
Cdd:TIGR04523 577 QKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKE 656
|
....
gi 530363230 642 ITDT 645
Cdd:TIGR04523 657 IRNK 660
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
282-779 |
1.85e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.61 E-value: 1.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 282 EEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTE 361
Cdd:PTZ00121 1173 EDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNE 1252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 362 FETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVEleELKKVLGEK---ETLLYENKQFEKI 438
Cdd:PTZ00121 1253 EIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKAD--EAKKKAEEAkkaDEAKKKAEEAKKK 1330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 439 AEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTEL--TSHCNKLSLENKELTQET 516
Cdd:PTZ00121 1331 ADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKkkADEAKKKAEEDKKKADEL 1410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 517 SDMTLELKNQQE---DINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKcKLDKSEENCNNLRKQVENK 593
Cdd:PTZ00121 1411 KKAAAAKKKADEakkKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK-KADEAKKKAEEAKKADEAK 1489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 594 NKyIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKfgEITDTYQKEIEDKKISEENLLEEVEKAKVIADE 673
Cdd:PTZ00121 1490 KK-AEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEA--KKADEAKKAEEKKKADELKKAEELKKAEEKKKA 1566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 674 AVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIER 753
Cdd:PTZ00121 1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK 1646
|
490 500
....*....|....*....|....*.
gi 530363230 754 EEKEKLKREAKENTATLKEKKDKKTQ 779
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAEEAKKAEE 1672
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
369-683 |
2.58e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 2.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 369 LEELLRTEQqRLEKNEDQLKILTMELQKKSSELEEMTKLTN-NKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQ 447
Cdd:TIGR02169 176 LEELEEVEE-NIERLDLIIDEKRQQLERLRREREKAERYQAlLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 448 ELIGLLQAREKEVHDLEIQLTAIT------TSEQY--YSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDM 519
Cdd:TIGR02169 255 KLTEEISELEKRLEEIEQLLEELNkkikdlGEEEQlrVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKL 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 520 TLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKckldKSEENCNNLRKQVENKNKYIEE 599
Cdd:TIGR02169 335 LAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK----DYREKLEKLKREINELKRELDR 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 600 LQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQK 679
Cdd:TIGR02169 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
....
gi 530363230 680 EIDK 683
Cdd:TIGR02169 491 ELAE 494
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
77-669 |
3.58e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.38 E-value: 3.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 77 LEQNSEGLSRVYSKLYKEAEKIKKWKVSTE---AELRQKESKLQENRKIIEAQRKAIQELQfgnEKVSlKLEEGIQENKD 153
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTEnieELIKEKEKELEEVLREINEISSELPELR---EELE-KLEKEVKELEE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 154 LIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMitafEELRVQAENSRlemhfKLKEDYEKIQ 233
Cdd:PRK03918 236 LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL----KELKEKAEEYI-----KLSEFYEEYL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 234 HLEQEYKKEINDKEKQVSLLLIQITE---KENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTK----EL 306
Cdd:PRK03918 307 DELREIEKRLSRLEEEINGIEERIKEleeKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRltglTP 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 307 EDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFV-VTEFETTVCSLEELLRTE-------QQ 378
Cdd:PRK03918 387 EKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpVCGRELTEEHRKELLEEYtaelkriEK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 379 RLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEV--ELEELKKVLGE--KETLLYENKQFEKIAEELKGTEQELIGLLQ 454
Cdd:PRK03918 467 ELKEIEEKERKLRKELRELEKVLKKESELIKLKELaeQLKELEEKLKKynLEELEKKAEEYEKLKEKLIKLKGEIKSLKK 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 455 aREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTS---------HCNKLSLEN-----KELTQETSDMT 520
Cdd:PRK03918 547 -ELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEerlkelepfYNEYLELKDaekelEREEKELKKLE 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 521 LELKNQQEDINNNKKQEERMLKQIENL-----QETETQLRNELEYVREELKQKRDEVKC---KLDKSEENCNNLRKQVEN 592
Cdd:PRK03918 626 EELDKAFEELAETEKRLEELRKELEELekkysEEEYEELREEYLELSRELAGLRAELEElekRREEIKKTLEKLKEELEE 705
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530363230 593 KNKYIEELQQENKALKKkgtaeskqLNVYEIKVNKLELEL-ESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKV 669
Cdd:PRK03918 706 REKAKKELEKLEKALER--------VEELREKVKKYKALLkERALSKVGEIASEIFEELTEGKYSGVRVKAEENKVKL 775
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
123-779 |
4.08e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 4.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 123 IEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKE-NNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNnIE 201
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLRRErEKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLAS-LE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 202 KMITAFEELRVQAENSRLEMHFKLKEDYEKIQHLEQE----YKKEINDKEKQVSLLLIQITEKENKMKDLtfllEESRDK 277
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEeqlrVKEKIGELEAEIASLERSIAEKERELEDA----EERLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 278 VNQLEEKTKLQSENLKQSIEKQ------------------HHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTE 339
Cdd:TIGR02169 327 LEAEIDKLLAEIEELEREIEEErkrrdklteeyaelkeelEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 340 EKETQMEESNKARAAHSFV----------VTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTN 409
Cdd:TIGR02169 407 ELDRLQEELQRLSEELADLnaaiagieakINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELS 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 410 NKEVELEELKKVLGEKETLLYENKQFEKIAEE-LKGTEQELIGLLQAREKEVHDLEI----QLTAITTSEQYYSKE---- 480
Cdd:TIGR02169 487 KLQRELAEAEAQARASEERVRGGRAVEEVLKAsIQGVHGTVAQLGSVGERYATAIEVaagnRLNNVVVEDDAVAKEaiel 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 481 VKDLK----TELENEKLKNTELTSHCNKL--------------------------------SLE--------------NK 510
Cdd:TIGR02169 567 LKRRKagraTFLPLNKMRDERRDLSILSEdgvigfavdlvefdpkyepafkyvfgdtlvveDIEaarrlmgkyrmvtlEG 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 511 ELTQETSDMT---LELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVK----------CKLD 577
Cdd:TIGR02169 647 ELFEKSGAMTggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSdasrkigeieKEIE 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 578 KSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELES-----AKQKFGEITDTYQK---- 648
Cdd:TIGR02169 727 QLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlearlSHSRIPEIQAELSKleee 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 649 --EIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEmvalMEKHKHQYDKIIEERDSELGLYKSKEQEQSS 726
Cdd:TIGR02169 807 vsRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKS----IEKEIENLNGKKEELEEELEELEAALRDLES 882
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 530363230 727 LRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQ 779
Cdd:TIGR02169 883 RLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
204-731 |
4.10e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 57.36 E-value: 4.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 204 ITAFEELRVQAENSRLEMHFKLKEDYEKIQHLEqEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEE 283
Cdd:PRK02224 222 IERYEEQREQARETRDEADEVLEEHEERREELE-TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLA 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 284 KTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTE---EKETQMEESNKARAAHSFVVT 360
Cdd:PRK02224 301 EAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEEraeELREEAAELESELEEAREAVE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 361 EFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEkIAE 440
Cdd:PRK02224 381 DRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPE-CGQ 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 441 ELKGTEQelIGLLQAREKEVHDLEIQLTAITTseqyyskEVKDLKTELEN-EKLKNTEltSHCNKLSLENKELTQETSDM 519
Cdd:PRK02224 460 PVEGSPH--VETIEEDRERVEELEAELEDLEE-------EVEEVEERLERaEDLVEAE--DRIERLEERREDLEELIAER 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 520 TLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELK---QKRDEVKCKLDkSEENCNNLRKQVENKNKY 596
Cdd:PRK02224 529 RETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAelnSKLAELKERIE-SLERIRTLLAAIADAEDE 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 597 IEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKqkfgeitdtYQKEIEDKKISEENLLEEVEKAKVIADEAVK 676
Cdd:PRK02224 608 IERLREKREALAELNDERRERLAEKRERKRELEAEFDEAR---------IEEAREDKERAEEYLEQVEEKLDELREERDD 678
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 530363230 677 LQKEIDKrCQHKIAEMVALMEKHKHqydkiIEERDSEL-GLYKSKEQEQSS---LRASL 731
Cdd:PRK02224 679 LQAEIGA-VENELEELEELRERREA-----LENRVEALeALYDEAEELESMygdLRAEL 731
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
271-592 |
4.97e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 4.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 271 LEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNK 350
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 351 araahsfvvtefettvcsLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLY 430
Cdd:TIGR02168 759 ------------------LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 431 ENKQ-FEKIAEELKGTEQELIGLLQAREKEVHDLEI---QLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLS 506
Cdd:TIGR02168 821 NLRErLESLERRIAATERRLEDLEEQIEELSEDIESlaaEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 507 LENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQEtetQLRNELEYVREELKQKRDEVKCKLDKSEENCNNL 586
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE---RLSEEYSLTLEEAEALENKIEDDEEEARRRLKRL 977
|
....*.
gi 530363230 587 RKQVEN 592
Cdd:TIGR02168 978 ENKIKE 983
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
88-757 |
5.44e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 5.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 88 YSKLYKEAEKIKKW-----KVSTEAELRQKESKLQENRKIIEAQRKAIQE-----------LQFGNEKVSLKLEEGIQEN 151
Cdd:TIGR02169 213 YQALLKEKREYEGYellkeKEALERQKEAIERQLASLEEELEKLTEEISElekrleeieqlLEELNKKIKDLGEEEQLRV 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 152 KDLIKENNATRHLCN----LLKETCARSAEKTKKYEYEREETRQVYMDLNNNIE-------KMITAFEELRVQAENSRLE 220
Cdd:TIGR02169 293 KEKIGELEAEIASLErsiaEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEeerkrrdKLTEEYAELKEELEDLRAE 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 221 MH---FKLKEDYEKIQHLEQE---YKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQ 294
Cdd:TIGR02169 373 LEevdKEFAETRDELKDYREKlekLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 295 SIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLR 374
Cdd:TIGR02169 453 QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGS 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 375 TEQQ-----------RLE----KNEDQLKILTMELqkKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYE------NK 433
Cdd:TIGR02169 533 VGERyataievaagnRLNnvvvEDDAVAKEAIELL--KRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAvdlvefDP 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 434 QFEK----------IAEELKGTEQELIGL-LQAREKEV----------HDLEIQLTAITTSEQYYSKEVKDLKTELENEK 492
Cdd:TIGR02169 611 KYEPafkyvfgdtlVVEDIEAARRLMGKYrMVTLEGELfeksgamtggSRAPRGGILFSRSEPAELQRLRERLEGLKREL 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 493 lknTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELkqkrDEV 572
Cdd:TIGR02169 691 ---SSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSEL----KEL 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 573 KCKLDKSEENCNNLRKQVEN-----KNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDtYQ 647
Cdd:TIGR02169 764 EARIEELEEDLHKLEEALNDlearlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQE-QR 842
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 648 KEIEDKKISEENLLEEVEKAKviadeavklqKEIDKRCQHKIAEMVALMEKHKHqYDKIIEERDSELGLYKSKEQEQSSL 727
Cdd:TIGR02169 843 IDLKEQIKSIEKEIENLNGKK----------EELEEELEELEAALRDLESRLGD-LKKERDELEAQLRELERKIEELEAQ 911
|
730 740 750
....*....|....*....|....*....|.
gi 530363230 728 RASLEIELSNLKAELLSVKKQL-EIEREEKE 757
Cdd:TIGR02169 912 IEKKRKRLSELKAKLEALEEELsEIEDPKGE 942
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
217-764 |
9.28e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.23 E-value: 9.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 217 SRLEMHFKLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEktklqsenLKQSI 296
Cdd:PRK03918 221 EELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE--------LKEKA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 297 EKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLtEEKETQMEESNKARAAHSFVVTEFETTVCSLEElLRTE 376
Cdd:PRK03918 293 EEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEL-EEKEERLEELKKKLKELEKRLEELEERHELYEE-AKAK 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 377 QQRLEKNEDQLKILTMELQKKsseleEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQElIGLLQAR 456
Cdd:PRK03918 371 KEELERLKKRLTGLTPEKLEK-----ELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGK-CPVCGRE 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 457 EKEVHDLEIQltaittseQYYSKEVKDLKTELeneklknteltshcnklslenKELTQETSDMTLELKNQQEDINNNKK- 535
Cdd:PRK03918 445 LTEEHRKELL--------EEYTAELKRIEKEL---------------------KEIEEKERKLRKELRELEKVLKKESEl 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 536 -QEERMLKQIENLQETETqlrnelEYVREELKQKRDEvkckLDKSEENCNNLRKQVENKNKYIEELQQENKAL----KKK 610
Cdd:PRK03918 496 iKLKELAEQLKELEEKLK------KYNLEELEKKAEE----YEKLKEKLIKLKGEIKSLKKELEKLEELKKKLaeleKKL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 611 GTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKiSEENLLEEVEKAKVIADEAVKLQKEIDKRcQHKIA 690
Cdd:PRK03918 566 DELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKD-AEKELEREEKELKKLEEELDKAFEELAET-EKRLE 643
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 530363230 691 EMVALMEKHKHQYDKiiEERDSELGLYKSKEQEQSSLRASLEiELSNLKAELLSVKKQLEIEREEKEKLKREAK 764
Cdd:PRK03918 644 ELRKELEELEKKYSE--EEYEELREEYLELSRELAGLRAELE-ELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
269-614 |
1.53e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 55.61 E-value: 1.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 269 FLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQiatkticQLTEEKETQMEES 348
Cdd:pfam12128 597 ASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLR-------RLFDEKQSEKDKK 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 349 NKARAAH-SFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKltnnkeVELEELKKVLGEKET 427
Cdd:pfam12128 670 NKALAERkDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALD------AQLALLKAAIAARRS 743
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 428 LLyenkqfekiAEELKGTEQELIGLLQAR---EKEVHDLEiqlTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNK 504
Cdd:pfam12128 744 GA---------KAELKALETWYKRDLASLgvdPDVIAKLK---REIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPR 811
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 505 LSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQ----ETETQLRNELEYVRE-----ELKQKRDEVKCK 575
Cdd:pfam12128 812 LATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQvrlsENLRGLRCEMSKLATlkedaNSEQAQGSIGER 891
|
330 340 350
....*....|....*....|....*....|....*....
gi 530363230 576 LDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAE 614
Cdd:pfam12128 892 LAQLEDLKLKRDYLSESVKKYVEHFKNVIADHSGSGLAE 930
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
377-615 |
1.57e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.77 E-value: 1.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 377 QQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYE-NKQFEKIAEELKGTEQELIGLLQA 455
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAlEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 456 REKEVHDLEIQLTAITTSEQYYSKEVKdLKTELENEKLKNTELTshcnklslenKELTQETSDMTLELKNQQEDINNNKK 535
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALL-LSPEDFLDAVRRLQYL----------KYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 536 QEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAES 615
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
76-665 |
1.61e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.43 E-value: 1.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 76 VLEQNSEGLSRVYSKLykeAEKIKKWKVSTEAELRQKESKLQENRKIIEAQRKAIQELQfgnekvslkleegiQENKDLI 155
Cdd:PRK02224 181 VLSDQRGSLDQLKAQI---EEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETR--------------DEADEVL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 156 KENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMITAFEELRVQAENSRLEmhfklKEDYEKIQHL 235
Cdd:PRK02224 244 EEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDAD-----AEAVEARREE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 236 EQEYKKEINDKEKQVSLlliQITEKENKMKDLtflleesRDKVNQLEEktklQSENLKqsiEKQHHLTKELEDIKVSLQR 315
Cdd:PRK02224 319 LEDRDEELRDRLEECRV---AAQAHNEEAESL-------REDADDLEE----RAEELR---EEAAELESELEEAREAVED 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 316 SVSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEfettVCSLEELLRTEQQRLEKNEDQLKILTMELQ 395
Cdd:PRK02224 382 RREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRER----EAELEATLRTARERVEEAEALLEAGKCPEC 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 396 KKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAI-TTSE 474
Cdd:PRK02224 458 GQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIeEKRE 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 475 QYYS--KEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKN------QQEDINNNKKQEERMLKQIEN 546
Cdd:PRK02224 538 RAEElrERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESlerirtLLAAIADAEDEIERLREKREA 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 547 LQETETQLRNELEYVREELKQKRDEVkckldkSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEikvN 626
Cdd:PRK02224 618 LAELNDERRERLAEKRERKRELEAEF------DEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVE---N 688
|
570 580 590
....*....|....*....|....*....|....*....
gi 530363230 627 KLElELESAKQKfgeitdtyQKEIEDKKISEENLLEEVE 665
Cdd:PRK02224 689 ELE-ELEELRER--------REALENRVEALEALYDEAE 718
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
77-600 |
1.75e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 1.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 77 LEQNSEGLSRVYSKLYKEAEKIKKWKVSTEAELRQKESKLQENRKIIEAQRKAIQELqfgnEKVSLKLEEGIQENKDLIK 156
Cdd:COG1196 237 LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL----LAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 157 ENNATRhlcNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMITAFEELRVQAENSRLEMH------FKLKEDYE 230
Cdd:COG1196 313 ELEERL---EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAeaeeelEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 231 KIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIK 310
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 311 VSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAH---------------SFVVTEFETTVcsLEELLRT 375
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALllaglrglagavavlIGVEAAYEAAL--EAALAAA 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 376 EQQRLEKNEDQLKILTMELQKK--------SSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQ 447
Cdd:COG1196 548 LQNIVVEDDEVAAAAIEYLKAAkagratflPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 448 ELIGLLQAREKEV---HDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTshcnKLSLENKELTQETSDMTLELK 524
Cdd:COG1196 628 VAARLEAALRRAVtlaGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELE----ELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530363230 525 NQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEEL 600
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
88-788 |
2.13e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 2.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 88 YSKLYKEAEKIKKwkvsTEAELRQKESKLQENRKIIEAQRKaIQELQFGNEkvSLKLEEGIQENKDliKENNATRHLCNL 167
Cdd:PTZ00121 1093 TEEAFGKAEEAKK----TETGKAEEARKAEEAKKKAEDARK-AEEARKAED--ARKAEEARKAEDA--KRVEIARKAEDA 1163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 168 LKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMITAFEELRvqAENSRLEMHFKLKEDYEKIQHLE--QEYKKEIND 245
Cdd:PTZ00121 1164 RKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARK--AEEERKAEEARKAEDAKKAEAVKkaEEAKKDAEE 1241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 246 KEKQVSlllIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEE 325
Cdd:PTZ00121 1242 AKKAEE---ERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD 1318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 326 DLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEEllRTEQQRLEKNEDQLKilTMELQKKSSEL---E 402
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE--KAEAAEKKKEEAKKK--ADAAKKKAEEKkkaD 1394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 403 EMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKI--AEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKE 480
Cdd:PTZ00121 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKkkADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADE 1474
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 481 VKdlKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEY 560
Cdd:PTZ00121 1475 AK--KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 561 VREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQEN--KALKKKGTAESKQLNVYEIKVNKLElELESAKQK 638
Cdd:PTZ00121 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEvmKLYEEEKKMKAEEAKKAEEAKIKAE-ELKKAEEE 1631
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 639 FGEITDTYQKEIEDKKISEEnLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYK 718
Cdd:PTZ00121 1632 KKKVEQLKKKEAEEKKKAEE-LKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKK 1710
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 719 SKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTFLLETPEI 788
Cdd:PTZ00121 1711 EAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
597-780 |
2.83e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 2.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 597 IEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQkEIEDKKISEENLLEEVEKakviadEAVK 676
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR-ALEQELAALEAELAELEK------EIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 677 LQKEIDKRcQHKIAEMVALMEKH-KHQYDKIIEERDSELGLYKSKE--QEQSSLRASLEIELSNLKAELLSVKKQLEIER 753
Cdd:COG4942 95 LRAELEAQ-KEELAELLRALYRLgRQPPLALLLSPEDFLDAVRRLQylKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180
....*....|....*....|....*..
gi 530363230 754 EEKEKLKREAKENTATLKEKKDKKTQT 780
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKL 200
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
90-653 |
3.43e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.26 E-value: 3.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 90 KLYKEAEKIKKWKVSTEAELRQKESKLQENRKIIEAQR---KAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCN 166
Cdd:TIGR04523 177 LLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKsleSQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLN 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 167 LLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMITAFEELRVQAENsrlEMHFKLKEDYEKIQHLEQEYKKEINDK 246
Cdd:TIGR04523 257 QLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQ---DWNKELKSELKNQEKKLEEIQNQISQN 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 247 EKQVSLLLIQITEKENKMKDLTfllEESRDKVNQLEEKTKlQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEED 326
Cdd:TIGR04523 334 NKIISQLNEQISQLKKELTNSE---SENSEKQRELEEKQN-EIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQ 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 327 LQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTK 406
Cdd:TIGR04523 410 KDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQK 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 407 LTNNKEVELEELKKvlgEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQY--YSKEVKDL 484
Cdd:TIGR04523 490 ELKSKEKELKKLNE---EKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKenLEKEIDEK 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 485 KTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREE 564
Cdd:TIGR04523 567 NKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQE 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 565 LKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKAL----KKKGTAESKQLNVYEIKVNKLELELESAK-QKF 639
Cdd:TIGR04523 647 VKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELslhyKKYITRMIRIKDLPKLEEKYKEIEKELKKlDEF 726
|
570
....*....|....
gi 530363230 640 GEITDTYQKEIEDK 653
Cdd:TIGR04523 727 SKELENIIKNFNKK 740
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
552-765 |
3.58e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 3.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 552 TQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELE 631
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 632 LESAKQKFGEITDTYQKEIEDKKI----SEENLLEEVEKAKVIADEAVKLQKEID--KRCQHKIAEMVALMEKHKHQYDK 705
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLalllSPEDFLDAVRRLQYLKYLAPARREQAEelRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 706 IIEERDSELGLYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKE 765
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
231-781 |
1.86e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.04 E-value: 1.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 231 KIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTfllEESRDKVNQLEEK-TKLQSENLKQSIEKQH--------- 300
Cdd:pfam15921 332 ELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFS---QESGNLDDQLQKLlADLHKREKELSLEKEQnkrlwdrdt 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 301 -------HLTKELEDIKVSLQRSVSTQKALEEDLQiatkticQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLE--- 370
Cdd:pfam15921 409 gnsitidHLRRELDDRNMEVQRLEALLKAMKSECQ-------GQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRkvv 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 371 ELLRTEQQRLEKNEDQLKILTMELQKKSSELE----EMTKLTNNKEVELEELKKVLGEKETLlyENKQFEKIAEELKGTE 446
Cdd:pfam15921 482 EELTAKKMTLESSERTVSDLTASLQEKERAIEatnaEITKLRSRVDLKLQELQHLKNEGDHL--RNVQTECEALKLQMAE 559
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 447 QE-LIGLLQAREKEVHDLEIQLTAITTSEQYyskEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLElkn 525
Cdd:pfam15921 560 KDkVIEILRQQIENMTQLVGQHGRTAGAMQV---EKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELE--- 633
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 526 QQEDINNNKKQeermLKQIENLQETETQLRNELEYVREELKQkrdevkckldkseencnnlrkqvenknkyieeLQQENK 605
Cdd:pfam15921 634 KVKLVNAGSER----LRAVKDIKQERDQLLNEVKTSRNELNS--------------------------------LSEDYE 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 606 ALKKKGTAESKQLnvyEIKVNKLELELESAkqkfgeitdtyQKEIEDKKiseeNLLEEVEKAKviaDEAVKLQKEIDKRC 685
Cdd:pfam15921 678 VLKRNFRNKSEEM---ETTTNKLKMQLKSA-----------QSELEQTR----NTLKSMEGSD---GHAMKVAMGMQKQI 736
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 686 QHKIAEMVALMEKhkhqyDKIIEERDSELGLYKSKEQEQSSlraSLEIELSNLKAELLSVKKQLEIEREEKEKLkreaKE 765
Cdd:pfam15921 737 TAKRGQIDALQSK-----IQFLEEAMTNANKEKHFLKEEKN---KLSQELSTVATEKNKMAGELEVLRSQERRL----KE 804
|
570
....*....|....*.
gi 530363230 766 NTATLKEKKDKKTQTF 781
Cdd:pfam15921 805 KVANMEVALDKASLQF 820
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
238-784 |
2.27e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.89 E-value: 2.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 238 EYKKEINDKEKQVSLLLIQITEKENK-----MKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVS 312
Cdd:TIGR00618 297 AHIKAVTQIEQQAQRIHTELQSKMRSrakllMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHT 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 313 LQRSVSTQK----ALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELlRTEQQRLEKNEDQLK 388
Cdd:TIGR00618 377 LTQHIHTLQqqktTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYA-ELCAAAITCTAQCEK 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 389 ILTMELQKKSSELEEMTKLTNNKEVELEELKKVlgeketllyeNKQFEKIAEELKGTEQELIGllQAREKEVHDLEIQLT 468
Cdd:TIGR00618 456 LEKIHLQESAQSLKEREQQLQTKEQIHLQETRK----------KAVVLARLLELQEEPCPLCG--SCIHPNPARQDIDNP 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 469 AITTSE-QYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENL 547
Cdd:TIGR00618 524 GPLTRRmQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKL 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 548 QETETQLRNELEYVREELKQKRDEVKCKLdkSEENC-NNLRKQVENKNKYIEELQQENKALKKKGTAESKQLnvYEIKVN 626
Cdd:TIGR00618 604 SEAEDMLACEQHALLRKLQPEQDLQDVRL--HLQQCsQELALKLTALHALQLTLTQERVREHALSIRVLPKE--LLASRQ 679
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 627 KLELELESAKQKFgeitdTYQKEIEDKKISEENLLEEVEKakviadEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKI 706
Cdd:TIGR00618 680 LALQKMQSEKEQL-----TYWKEMLAQCQTLLRELETHIE------EYDREFNEIENASSSLGSDLAAREDALNQSLKEL 748
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530363230 707 IEERDSELGlYKSKEQEQSSLRASLEIELSnlkAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTFLLE 784
Cdd:TIGR00618 749 MHQARTVLK-ARTEAHFNNNEEVTAALQTG---AELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQ 822
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
76-776 |
2.74e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.51 E-value: 2.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 76 VLEQNSEGLSRVYSKLYKEAEKIKKWKVSTEAELRQKESKLQENRKIIEAQRKAIQELQfgnekvslKLEEGIQENKDLI 155
Cdd:TIGR00618 205 LLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLK--------QLRARIEELRAQE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 156 KENNATRHLCNLlketcARSAEKTKKYEYEREETRQVYMDLNNNIEKMITAFEELRVQAENsrlemHFKLKEDYEKIQHL 235
Cdd:TIGR00618 277 AVLEETQERINR-----ARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAA-----HVKQQSSIEEQRRL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 236 EQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKvNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQR 315
Cdd:TIGR00618 347 LQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQK-TTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQ 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 316 SVSTQKalEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKiltMELQ 395
Cdd:TIGR00618 426 LAHAKK--QQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARL---LELQ 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 396 KKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQ 475
Cdd:TIGR00618 501 EEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDN 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 476 YYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQEtsdMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLR 555
Cdd:TIGR00618 581 RSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRK---LQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQ 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 556 NELEY----VREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELE 631
Cdd:TIGR00618 658 ERVREhalsIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAR 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 632 LESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIdkrcQHKIAEMVALMEKHKHQYDKIIEERD 711
Cdd:TIGR00618 738 EDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEI----QFFNRLREEDTHLLKTLEAEIGQEIP 813
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530363230 712 SELGLYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEiEREEKEKLKREAKENTATLKEKKDK 776
Cdd:TIGR00618 814 SDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLL-KYEECSKQLAQLTQEQAKIIQLSDK 877
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
242-777 |
6.39e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.02 E-value: 6.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 242 EINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQK 321
Cdd:TIGR04523 34 EEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIK 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 322 ALEEDLQIATKTICQLTEEKetqmEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSEL 401
Cdd:TIGR04523 114 NDKEQKNKLEVELNKLEKQK----KENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNI 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 402 EEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEV 481
Cdd:TIGR04523 190 DKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 482 KDLKTELENEKLKNTELTSHCNKLSLE------------NKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQE 549
Cdd:TIGR04523 270 SEKQKELEQNNKKIKELEKQLNQLKSEisdlnnqkeqdwNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKK 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 550 TETQLRNELEYVREELKQKRDEV---KCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVN 626
Cdd:TIGR04523 350 ELTNSESENSEKQRELEEKQNEIeklKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIE 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 627 KLELELESAKQKFGEITDT---YQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALmEKHKHQY 703
Cdd:TIGR04523 430 RLKETIIKNNSEIKDLTNQdsvKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKL-NEEKKEL 508
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530363230 704 DKIIEERDSELGLYKSKEQEQSSLRASLEIELSNLKAELLSV-----KKQLEIEREEKEKLKREAKENTATLKEKKDKK 777
Cdd:TIGR04523 509 EEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDdfelkKENLEKEIDEKNKEIEELKQTQKSLKKKQEEK 587
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
106-451 |
6.64e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 6.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 106 EAELRQKESKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYE 185
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 186 REETRQVYMDLNNNIEKMITAFEELRVQAENsrlemhfkLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMK 265
Cdd:TIGR02168 784 IEELEAQIEQLKEELKALREALDELRAELTL--------LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 266 DLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKE--T 343
Cdd:TIGR02168 856 SLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEglE 935
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 344 QMEESNKARAAHSFVVT-----EFETTVCSLEELLRTEQQRLEKNEDQLKILTM----ELQKKSSELEEMTKLTNNKEVE 414
Cdd:TIGR02168 936 VRIDNLQERLSEEYSLTleeaeALENKIEDDEEEARRRLKRLENKIKELGPVNLaaieEYEELKERYDFLTAQKEDLTEA 1015
|
330 340 350
....*....|....*....|....*....|....*....
gi 530363230 415 LEELKKVLGE--KETLLYENKQFEKIAEELKGTEQELIG 451
Cdd:TIGR02168 1016 KETLEEAIEEidREARERFKDTFDQVNENFQRVFPKLFG 1054
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
405-638 |
8.95e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 8.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 405 TKLTNNKEVELEELKKVLGEKETLLYENK-QFEKIAEELKGTEQELIgllqAREKEVHDLEIQLTAITTSEQYYSKEVKD 483
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKkEEKALLKQLAALERRIA----ALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 484 LKTELENEKLKNTELTSHCNKLSLENKeltqetsdmtLELKNQQEDINNNKKQEERMLKQIENLQETETQLR---NELEY 560
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPP----------LALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRadlAELAA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530363230 561 VREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQK 638
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
90-790 |
1.05e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 90 KLYKEAEKIKKWKVSTEAELRQKESKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLK 169
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEE 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 170 ETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMITAFEELRVQAENSRLEMHFKLKEDYEKIQHLEQEYKKEINDKEKQ 249
Cdd:pfam02463 405 KEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQE 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 250 VSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHH-LTKELEDIKVSLQRSVSTQKALEEDLQ 328
Cdd:pfam02463 485 QLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVaVENYKVAISTAVIVEVSATADEVEERQ 564
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 329 IATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLT 408
Cdd:pfam02463 565 KLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAK 644
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 409 NNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTEL 488
Cdd:pfam02463 645 ESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLA 724
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 489 ENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENlQETETQLRNELEYVREELKQK 568
Cdd:pfam02463 725 DRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREK-TEKLKVEEEKEEKLKAQEEEL 803
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 569 RDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQK 648
Cdd:pfam02463 804 RALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQK 883
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 649 EIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKS-KEQEQSSL 727
Cdd:pfam02463 884 LKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNkEEEEERNK 963
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 530363230 728 RASLEIELSNLKAELLSVKKQLEIEREEKEKLKRE-AKENTATLKEKKDKKTQTFLLETPEIYW 790
Cdd:pfam02463 964 RLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKErLEEEKKKLIRAIIEETCQRLKEFLELFV 1027
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
271-607 |
1.28e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 48.74 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 271 LEESRDKVNQLEEKTKLQSENLKQSIEKQH-HLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEEsn 349
Cdd:pfam07888 46 LLQAQEAANRQREKEKERYKRDREQWERQRrELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQ-- 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 350 kaRAAHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLL 429
Cdd:pfam07888 124 --RAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 430 YENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLEN 509
Cdd:pfam07888 202 AQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQA 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 510 KELTQETSDMTLEL--------KNQQEDINNNKKQEERMLKQIENLQETETQL---RNELEYVREELKQKRDEVKCKLDK 578
Cdd:pfam07888 282 AQLTLQLADASLALregrarwaQERETLQQSAEADKDRIEKLSAELQRLEERLqeeRMEREKLEVELGREKDCNRVQLSE 361
|
330 340
....*....|....*....|....*....
gi 530363230 579 SEENCNNLRKQVENKNKYIEELQQENKAL 607
Cdd:pfam07888 362 SRRELQELKASLRVAQKEKEQLQAEKQEL 390
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
368-762 |
1.37e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.35 E-value: 1.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 368 SLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTkltNNKEVELEELKKVLGEKETLL---------YENKQFEKI 438
Cdd:pfam15921 128 AMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDML---EDSNTQIEQLRKMMLSHEGVLqeirsilvdFEEASGKKI 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 439 AEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEklknTELTshcnkLSLENKELTQETSD 518
Cdd:pfam15921 205 YEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNK----IELL-----LQQHQDRIEQLISE 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 519 MTLELKNQQEDINNNKKQEERMLKQIENLQEtetQLRNE-------LEYVREELKQKRDEVKCKLDKSEENCNNLRKQVE 591
Cdd:pfam15921 276 HEVEITGLTEKASSARSQANSIQSQLEIIQE---QARNQnsmymrqLSDLESTVSQLRSELREAKRMYEDKIEELEKQLV 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 592 NKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDtyqkEIEDKKISEENLLEEVEKAKVIA 671
Cdd:pfam15921 353 LANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWD----RDTGNSITIDHLRRELDDRNMEV 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 672 DEAVKLQKEIDKRCQ-----------------HKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLE-- 732
Cdd:pfam15921 429 QRLEALLKAMKSECQgqmerqmaaiqgkneslEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQek 508
|
410 420 430
....*....|....*....|....*....|...
gi 530363230 733 ---IELSNlkAELLSVKKQLEIEREEKEKLKRE 762
Cdd:pfam15921 509 eraIEATN--AEITKLRSRVDLKLQELQHLKNE 539
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
258-773 |
1.95e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 48.63 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 258 TEKENKMKDLTFLLEESRDKVNQLE-EKTKLQS--ENLKQSIEKQHHLTKELEDIKVSLQRSVstqKALEEDLQIATKTI 334
Cdd:pfam01576 71 QELEEILHELESRLEEEEERSQQLQnEKKKMQQhiQDLEEQLDEEEAARQKLQLEKVTTEAKI---KKLEEDILLLEDQN 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 335 CQLTEEKEtQMEESnkaraahsfvVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVE 414
Cdd:pfam01576 148 SKLSKERK-LLEER----------ISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGE 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 415 LEELKKVLGEKETllyenkQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSkevkDLKTELENEKLK 494
Cdd:pfam01576 217 STDLQEQIAELQA------QIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQIS----ELQEDLESERAA 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 495 NTELTSHCNKLSLENKELTQETSDmTLELKNQQEDINNNKKQEERMLKQieNLQETETQLRNELEYVREELKQKRDEVKC 574
Cdd:pfam01576 287 RNKAEKQRRDLGEELEALKTELED-TLDTTAAQQELRSKREQEVTELKK--ALEEETRSHEAQLQEMRQKHTQALEELTE 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 575 KLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLEL---ELESAKQKFGEITDTYQKEIE 651
Cdd:pfam01576 364 QLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQArlsESERQRAELAEKLSKLQSELE 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 652 dkkiSEENLLEEVEKakviadEAVKLQKEIDKRCQ--HKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRA 729
Cdd:pfam01576 444 ----SVSSLLNEAEG------KNIKLSKDVSSLESqlQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKR 513
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 530363230 730 SLEIELSNLKAELLSVKKQLEIE-------REEKEKLKREAKENTATLKEK 773
Cdd:pfam01576 514 NVERQLSTLQAQLSDMKKKLEEDagtlealEEGKKRLQRELEALTQQLEEK 564
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
208-742 |
2.30e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 2.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 208 EELRVQAENSRLemhFKLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKL 287
Cdd:COG1196 279 LELELEEAQAEE---YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 288 QSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVvtefettvc 367
Cdd:COG1196 356 AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL--------- 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 368 sLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQ 447
Cdd:COG1196 427 -EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 448 ELIGLLQAREKEVHDLEIQLTA--ITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQEtsdmTLELKN 525
Cdd:COG1196 506 FLEGVKAALLLAGLRGLAGAVAvlIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT----FLPLDK 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 526 QQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVkckldkseencnnlRKQVENKNKYIEELQQENK 605
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV--------------AARLEAALRRAVTLAGRLR 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 606 ALKKKGTAESKQLNVYEIKVNKLELELESAKQKfgeitdtyQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRC 685
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE--------LEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 530363230 686 QHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLEIELSNLKAEL 742
Cdd:COG1196 720 ELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
548-776 |
2.83e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 2.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 548 QETETQLRNELEYVREELKQKRDEvkckLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNK 627
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKE----LAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 628 LELELESAKQKFGEITDTYQKeiedkkISEENLLEEVEKAKVIADEAVKLQ--KEIDKRCQHKIAEMVALMEKHKHQYDK 705
Cdd:COG4942 95 LRAELEAQKEELAELLRALYR------LGRQPPLALLLSPEDFLDAVRRLQylKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530363230 706 IIEERDSELGLYKSKEQEQSSLRAsleielsnLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDK 776
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEA--------LKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
358-777 |
3.26e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 3.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 358 VVTEFETTVCSLEELLRTE---QQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQ 434
Cdd:PRK03918 170 VIKEIKRRIERLEKFIKRTeniEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELES 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 435 FEKIAEELKGTEQELIGLLQAREKEVHDLEiqltaittseqyysKEVKDLKtELENEKLKNTELTSHCNKLSLENKELTQ 514
Cdd:PRK03918 250 LEGSKRKLEEKIRELEERIEELKKEIEELE--------------EKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEK 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 515 ETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKqVENKN 594
Cdd:PRK03918 315 RLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEK-LEKEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 595 KYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKF----GEITDTYQKEIEDKKISEenlLEEVEKAKVI 670
Cdd:PRK03918 394 EELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgRELTEEHRKELLEEYTAE---LKRIEKELKE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 671 ADEAVKLQKEIDKRCQHKIAEMVALMEKHKhqYDKIIEERDSELGLYKSKEQEQSSLrasleiELSNLKAELLSVKKQLE 750
Cdd:PRK03918 471 IEEKERKLRKELRELEKVLKKESELIKLKE--LAEQLKELEEKLKKYNLEELEKKAE------EYEKLKEKLIKLKGEIK 542
|
410 420
....*....|....*....|....*..
gi 530363230 751 IEREEKEKLKREAKENTATLKEKKDKK 777
Cdd:PRK03918 543 SLKKELEKLEELKKKLAELEKKLDELE 569
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
107-793 |
3.46e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.12 E-value: 3.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 107 AELRQKESKLQENRKIIEAQRKAIQE-LQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYE 185
Cdd:TIGR00606 415 ADLQSKERLKQEQADEIRDEKKGLGRtIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNS 494
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 186 REETRQVYMDLNNNiEKMITAFEELRVQAENSRLEMHFKLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMK 265
Cdd:TIGR00606 495 LTETLKKEVKSLQN-EKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKK 573
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 266 DLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQR------SVSTQKALEEDLQIATKTICQLTE 339
Cdd:TIGR00606 574 QLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSyedklfDVCGSQDEESDLERLKEEIEKSSK 653
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 340 EK----------ETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTN 409
Cdd:TIGR00606 654 QRamlagatavySQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAP 733
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 410 NKEVELEELKKVLGEketLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYsKEVKDLKTELE 489
Cdd:TIGR00606 734 GRQSIIDLKEKEIPE---LRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQ-MELKDVERKIA 809
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 490 NEKLKnteltSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKR 569
Cdd:TIGR00606 810 QQAAK-----LQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQ 884
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 570 --DEVKCKLDKSEENCNNLRKQVENKN----KYIEELQQENKALKKKGTAESK----QLNVYEIKVNKLELELESAKQKF 639
Cdd:TIGR00606 885 qfEEQLVELSTEVQSLIREIKDAKEQDspleTFLEKDQQEKEELISSKETSNKkaqdKVNDIKEKVKNIHGYMKDIENKI 964
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 640 GEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEI--DKRCQHKIAEMVALMEKHKHQYDKIIEERDSELG-L 716
Cdd:TIGR00606 965 QDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDidTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKeM 1044
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530363230 717 YKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTFLLETPEIYWKLD 793
Cdd:TIGR00606 1045 GQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLD 1121
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
510-683 |
7.10e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.36 E-value: 7.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 510 KELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEEN------- 582
Cdd:COG3883 26 SELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSggsvsyl 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 583 ---------------CNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQ 647
Cdd:COG3883 106 dvllgsesfsdfldrLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLA 185
|
170 180 190
....*....|....*....|....*....|....*.
gi 530363230 648 kEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDK 683
Cdd:COG3883 186 -QLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAA 220
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
358-599 |
7.43e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 7.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 358 VVTEFETTVCSLEELLRTEQQrLEKNEDQLKILTmELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQfEK 437
Cdd:COG4913 223 TFEAADALVEHFDDLERAHEA-LEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAEL-EE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 438 IAEELKGTEQElIGLLQAREKEVHDLEIQLTAittseQYYS---KEVKDLKTELENeklknteLTSHCNKLSLENKELTQ 514
Cdd:COG4913 300 LRAELARLEAE-LERLEARLDALREELDELEA-----QIRGnggDRLEQLEREIER-------LERELEERERRRARLEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 515 ETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKN 594
Cdd:COG4913 367 LLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALR 446
|
....*
gi 530363230 595 KYIEE 599
Cdd:COG4913 447 DALAE 451
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
301-774 |
1.08e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 301 HLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLtEEKETQMEESNKARAAHSFVVTEFETTVCSLEELlRTEQQRL 380
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREI-NEISSELPELREELEKLEKEVKELEELKEEIEEL-EKELESL 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 381 EKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETL--LYEN---------KQFEKIAEELKGTEQEL 449
Cdd:PRK03918 251 EGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLseFYEEyldelreieKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 450 IGL------LQAREKEVHDLEIQLTAITTSEQYYsKEVKDLKTELENEKLKNTELTShcNKLSLENKELTQETSDMTLEL 523
Cdd:PRK03918 331 KELeekeerLEELKKKLKELEKRLEELEERHELY-EEAKAKKEELERLKKRLTGLTP--EKLEKELEELEKAKEEIEEEI 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 524 KNQQEDINNNKKQEERMLKQIENLQE------------TETQLRNELEYVREELKQKRDEVKcKLDKSEENCNNLRKQVE 591
Cdd:PRK03918 408 SKITARIGELKKEIKELKKAIEELKKakgkcpvcgrelTEEHRKELLEEYTAELKRIEKELK-EIEEKERKLRKELRELE 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 592 NKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEIT---DTYQKEIEDKKISEENLLEEVEKAK 668
Cdd:PRK03918 487 KVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKgeiKSLKKELEKLEELKKKLAELEKKLD 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 669 VIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSElglykSKEQEQSSLRASLEIELSNLKAELLSVKKQ 748
Cdd:PRK03918 567 ELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAE-----KELEREEKELKKLEEELDKAFEELAETEKR 641
|
490 500
....*....|....*....|....*.
gi 530363230 749 LEIEREEKEKLKREAKENTATLKEKK 774
Cdd:PRK03918 642 LEELRKELEELEKKYSEEEYEELREE 667
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
617-779 |
1.27e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.59 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 617 QLNVYEIKVNKLELELESAKQKfgeiTDTYQKEIEDKKISEENLLEEVEKAKviaDEAVKLQKEIDKRcQHKIAEMVALM 696
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAE----LDALQAELEELNEEYNELQAELEALQ---AEIDKLQAEIAEA-EAEIEERREEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 697 EKH-KHQY----------------------------DKIIEERDSELGLYKSKEQEQSSLRASLEI---ELSNLKAELLS 744
Cdd:COG3883 89 GERaRALYrsggsvsyldvllgsesfsdfldrlsalSKIADADADLLEELKADKAELEAKKAELEAklaELEALKAELEA 168
|
170 180 190
....*....|....*....|....*....|....*
gi 530363230 745 VKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQ 779
Cdd:COG3883 169 AKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEA 203
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
232-665 |
1.99e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 1.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 232 IQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKlQSENLKQSIEKQHHLTKELEDIKv 311
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEE-ELEELEAELEELREELEKLEKLL- 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 312 SLQRSVSTQKALEEDLQIatktICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRteqQRLEKNEDQLKILT 391
Cdd:COG4717 126 QLLPLYQELEALEAELAE----LPERLEELEERLEELRELEEELEELEAELAELQEELEELLE---QLSLATEEELQDLA 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 392 MELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQE-LIGLLQAREKEVHDLEIQLTAI 470
Cdd:COG4717 199 EELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaALLALLGLGGSLLSLILTIAGV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 471 TT---------------SEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKK 535
Cdd:COG4717 279 LFlvlgllallflllarEKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 536 QEERMlkQIENLQETETQLRNELE-------YVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALK 608
Cdd:COG4717 359 LEEEL--QLEELEQEIAALLAEAGvedeeelRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEE 436
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 530363230 609 KKgtaesKQLNVYEIKVNKLELELESAKQKFGEITDtyQKEIEDKKISEENLLEEVE 665
Cdd:COG4717 437 LE-----EELEELEEELEELREELAELEAELEQLEE--DGELAELLQELEELKAELR 486
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
271-492 |
2.37e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 271 LEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNK 350
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 351 ARAAHSFVVTEFETT--VCSLEELLRTEQ-QRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKvlgEKET 427
Cdd:COG4942 102 QKEELAELLRALYRLgrQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA---ELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530363230 428 LLYENKQFEKIAEELKGTEQELIGLLQAREKEvhdLEIQLTAITTSEQYYSKEVKDLKTELENEK 492
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAE---LAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
389-772 |
2.73e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 2.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 389 ILTMELQKKSSELEemTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREK---EVHDLEI 465
Cdd:COG4717 46 MLLERLEKEADELF--KPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEElreELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 466 QLTAITTSEQYYS--KEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDinnNKKQEERMLKQ 543
Cdd:COG4717 124 LLQLLPLYQELEAleAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLA---TEEELQDLAEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 544 IENLQETETQLRNELEYVREELKQKRDEVKcKLDKSEENCNNLRKQVENKNKYI----------EELQQENKALKKKGTA 613
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELEEELE-QLENELEAAALEERLKEARLLLLiaaallallgLGGSLLSLILTIAGVL 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 614 ----------------ESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKL 677
Cdd:COG4717 280 flvlgllallflllarEKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 678 QKEIDKRCQHKiaEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLE------------IELSNLKAELLSV 745
Cdd:COG4717 360 EEELQLEELEQ--EIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEellgeleelleaLDEEELEEELEEL 437
|
410 420
....*....|....*....|....*..
gi 530363230 746 KKQLEIEREEKEKLKREAKENTATLKE 772
Cdd:COG4717 438 EEELEELEEELEELREELAELEAELEQ 464
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
103-322 |
2.77e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 2.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 103 VSTEAELRQKESKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLKETCARSAEKTKKY 182
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 183 EYEREETRQVYMDLNNNIEKM-ITAFEELRVQAENS----RLEMHFK-----LKEDYEKIQHLEQEYKKEINDKEKQVSL 252
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLgRQPPLALLLSPEDFldavRRLQYLKylapaRREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 253 LLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKA 322
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
432-739 |
2.78e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.51 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 432 NKQFEKIAEELKGTEQELIGL---LQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLE 508
Cdd:COG4372 44 QEELEQLREELEQAREELEQLeeeLEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKE 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 509 NKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEY-----VREELKQKRDEVKCKLDKSEENC 583
Cdd:COG4372 124 RQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQAlseaeAEQALDELLKEANRNAEKEEELA 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 584 NNLRKQV-ENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLE 662
Cdd:COG4372 204 EAEKLIEsLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAAL 283
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530363230 663 EVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLEIELSNLK 739
Cdd:COG4372 284 ELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLELLS 360
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
508-795 |
3.07e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.96 E-value: 3.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 508 ENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLR 587
Cdd:pfam02463 174 ALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 588 KQVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKA 667
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 668 KVIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQydkiiEERDSELGLYKSKEQEQSSLRASlEIELSNLKAELLSVKK 747
Cdd:pfam02463 334 KEEIEELEKELKELEIKREAEEEEEEELEKLQEKL-----EQLEEELLAKKKLESERLSSAAK-LKEEELELKSEEEKEA 407
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 530363230 748 QLEIEREEKEKLKREAKENTATLKEKKDKKTQTFLLETPEIYWKLDSK 795
Cdd:pfam02463 408 QLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEK 455
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
225-808 |
3.33e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.51 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 225 LKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKE----NKMKDLTFLLEESRDKVNQLEEKTKLQSEnlkqsiekqh 300
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSieynNAMDDYNNLKSALNELSSLEDMKNRYESE---------- 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 301 hltkeledikvslqrsvstQKALEEDLQIATKTICQLTEEKETQME-ESNKARAAHSFVVTEFE--TTVCSLEELLRTEQ 377
Cdd:PRK01156 258 -------------------IKTAESDLSMELEKNNYYKELEERHMKiINDPVYKNRNYINDYFKykNDIENKKQILSNID 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 378 QRLEKNEDQLKILTmELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYE----NKQFEKIAEELKGTEQELIGLL 453
Cdd:PRK01156 319 AEINKYHAIIKKLS-VLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSieslKKKIEEYSKNIERMSAFISEIL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 454 QAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENK------ELTQETSDMTL------ 521
Cdd:PRK01156 398 KIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVcpvcgtTLGEEKSNHIInhynek 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 522 ---------ELKNQQEDINNNKKQEERMLKQIE----NLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNnlrk 588
Cdd:PRK01156 478 ksrleekirEIEIEVKDIDEKIVDLKKRKEYLEseeiNKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKN---- 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 589 qvENKNKYIEELQQEN---------------KALKKKGTAESKQLNVYEIKVNKLELELESAKQkfgeITDTYQKEIEDK 653
Cdd:PRK01156 554 --RYKSLKLEDLDSKRtswlnalavislidiETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKS----YIDKSIREIENE 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 654 KISEENLLEEVEKAKVIADeavKLQKEIDKrCQHKIAEMvalmekhkhqydKIIEERDSELglyKSKEQEQSSLRASLEI 733
Cdd:PRK01156 628 ANNLNNKYNEIQENKILIE---KLRGKIDN-YKKQIAEI------------DSIIPDLKEI---TSRINDIEDNLKKSRK 688
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530363230 734 ELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATL-KEKKDKKTQTFLLETPEIYWKLDSKAVPSQTVSRNFTS 808
Cdd:PRK01156 689 ALDDAKANRARLESTIEILRTRINELSDRINDINETLeSMKKIKKAIGDLKRLREAFDKSGVPAMIRKSASQAMTS 764
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
477-680 |
3.34e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.68 E-value: 3.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 477 YSKEVKDLKTELENEKLKNTELtshcNKLSLENKELTQETSDMTlelKNQQED-INNNKKQEERMLKQIENLQETETQLR 555
Cdd:COG5022 873 SAQRVELAERQLQELKIDVKSI----SSLKLVNLELESEIIELK---KSLSSDlIENLEFKTELIARLKKLLNNIDLEEG 945
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 556 NELEYVREELKQKRDEVKCKLDKSEENCNNLRKQ----VENKNKYIEELQQENKAL------KKKGTAESKQLNVYEIKV 625
Cdd:COG5022 946 PSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKstilVREGNKANSELKNFKKELaelskqYGALQESTKQLKELPVEV 1025
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 530363230 626 nkleLELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKviADEAVKLQKE 680
Cdd:COG5022 1026 ----AELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQA--RYKALKLRRE 1074
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
540-784 |
3.92e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.15 E-value: 3.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 540 MLKQIENLQETETQLRNELEYVR-EELKQKrdevkckldkSEENCNNLRKQVENKNKYIEELQQENKALKKkgtaESKQL 618
Cdd:PRK05771 61 KLRSYLPKLNPLREEKKKVSVKSlEELIKD----------VEEELEKIEKEIKELEEEISELENEIKELEQ----EIERL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 619 NVYE-IKVN-KLELELESAKQKFGEItdtyqkeiedKKISEENLLEEVEKAKVIADEAVKlqkeidkrcqhkiAEMVALM 696
Cdd:PRK05771 127 EPWGnFDLDlSLLLGFKYVSVFVGTV----------PEDKLEELKLESDVENVEYISTDK-------------GYVYVVV 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 697 EKHKHQYDKIIEE-RDSELGLYKSKEQEQSS-LRASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEK- 773
Cdd:PRK05771 184 VVLKELSDEVEEElKKLGFERLELEEEGTPSeLIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERa 263
|
250
....*....|....*.
gi 530363230 774 ----KDKKT-QTFLLE 784
Cdd:PRK05771 264 ealsKFLKTdKTFAIE 279
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
224-426 |
3.95e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 3.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 224 KLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLT 303
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 304 KELEDIKVSLQRSvSTQKALE--------EDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELL-- 373
Cdd:COG4942 104 EELAELLRALYRL-GRQPPLAlllspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLae 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 530363230 374 -RTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKE 426
Cdd:COG4942 183 lEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
369-785 |
5.17e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.90 E-value: 5.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 369 LEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNnkevELEELKKVLGEKETLLYENKQFEKIAEELKGTEQE 448
Cdd:PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEEIEELEKELESLEGSKRKLEEKIRELEE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 449 LIGLLQAREKEVHDLEIQLTAITTSEQYYSK------EVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLE 522
Cdd:PRK03918 267 RIEELKKEIEELEEKVKELKELKEKAEEYIKlsefyeEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKK 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 523 LKNQQEDINNNKKQEE------RMLKQIENLQETETQLRNE-LEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNK 595
Cdd:PRK03918 347 LKELEKRLEELEERHElyeeakAKKEELERLKKRLTGLTPEkLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKK 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 596 YIEELqqenKALKKKGTAESKQLNVYEIK--VNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVE--KAKVIA 671
Cdd:PRK03918 427 AIEEL----KKAKGKCPVCGRELTEEHRKelLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEliKLKELA 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 672 DEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKI------IEERDSELGLYKSKEQEQSSLRASLEIELSNLKAELL-- 743
Cdd:PRK03918 503 EQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLkgeiksLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEel 582
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 530363230 744 --SVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTFLLET 785
Cdd:PRK03918 583 gfESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEE 626
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
541-711 |
5.71e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 5.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 541 LKQIENLQETETQLRnELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNv 620
Cdd:COG1579 6 LRALLDLQELDSELD-RLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLG- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 621 yEIKVNK----LELELESAKqkfgeitdtyqKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALM 696
Cdd:COG1579 84 -NVRNNKeyeaLQKEIESLK-----------RRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEEL 151
|
170
....*....|....*
gi 530363230 697 EKHKHQYDKIIEERD 711
Cdd:COG1579 152 AELEAELEELEAERE 166
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
559-772 |
6.65e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 6.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 559 EYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENK--ALKKKGTAESKQLNVYEIKVNKLELELESAK 636
Cdd:COG3206 160 AYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGlvDLSEEAKLLLQQLSELESQLAEARAELAEAE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 637 QKFgeitDTYQKEIEDKKISEENLLEEVEKAKVIADEAvKLQKEIDKrcqhkiaemvaLMEKHKHQYDKIIEERDSELGL 716
Cdd:COG3206 240 ARL----AALRAQLGSGPDALPELLQSPVIQQLRAQLA-ELEAELAE-----------LSARYTPNHPDVIALRAQIAAL 303
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530363230 717 YKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIEREEKEK----------LKREAKENTATLKE 772
Cdd:COG3206 304 RAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAElpeleaelrrLEREVEVARELYES 369
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
241-459 |
7.33e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 7.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 241 KEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQsiekqhhLTKELEDIKVSLQRSVSTQ 320
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA-------LEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 321 KALEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSE 400
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 530363230 401 LEEMTKLTNNKEVELEELKKVLGEKETLLY----ENKQFEKIAEELKGTEQELIGLLQAREKE 459
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLArlekELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
507-609 |
1.03e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.92 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 507 LENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELE-------YVREELKQKRDEVKCKLDKS 579
Cdd:COG2433 385 LIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEekderieRLERELSEARSEERREIRKD 464
|
90 100 110
....*....|....*....|....*....|....*.
gi 530363230 580 EE------NCNNLRKQVENKNKYIEELQQENKALKK 609
Cdd:COG2433 465 REisrldrEIERLERELEEERERIEELKRKLERLKE 500
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
649-765 |
1.03e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.92 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 649 EIEDKKISEENLLEEVEKAKVIADEAVKLQKEiDKRCQhKIAEMVALMEKHKHQYDKIIEERDSELG-----LYKSKEQE 723
Cdd:COG2433 380 EALEELIEKELPEEEPEAEREKEHEERELTEE-EEEIR-RLEEQVERLEAEVEELEAELEEKDERIErlereLSEARSEE 457
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 530363230 724 QSSLRAslEIELSNLKAELLSVKKQLEIEREEKEKLKREAKE 765
Cdd:COG2433 458 RREIRK--DREISRLDREIERLERELEEERERIEELKRKLER 497
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
595-769 |
1.30e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 595 KYIEELQQENKALKKKGTAESKQlnvyEIKVNKLELELESaKQKFGEITDTyQKEIEDKKISEENLLEEVEKAKviaDEA 674
Cdd:PRK12704 42 RILEEAKKEAEAIKKEALLEAKE----EIHKLRNEFEKEL-RERRNELQKL-EKRLLQKEENLDRKLELLEKRE---EEL 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 675 VKLQKEIDKRCQHkiaemvalMEKHKHQYDKIIEERDSEL----GLykSKEQEQSSLRASLEIELSNLKAELLSvkkqlE 750
Cdd:PRK12704 113 EKKEKELEQKQQE--------LEKKEEELEELIEEQLQELerisGL--TAEEAKEILLEKVEEEARHEAAVLIK-----E 177
|
170
....*....|....*....
gi 530363230 751 IEREEKEKLKREAKENTAT 769
Cdd:PRK12704 178 IEEEAKEEADKKAKEILAQ 196
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
591-780 |
1.34e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.51 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 591 ENKNKYIEELQQENKALKKKgtaeSKQLNVYEIKVNKLELELESAKQKFgeitdtyqKEIEDKKISEenLLEEVEKAKVI 670
Cdd:PRK00409 516 EKLNELIASLEELERELEQK----AEEAEALLKEAEKLKEELEEKKEKL--------QEEEDKLLEE--AEKEAQQAIKE 581
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 671 A-DEAVKLQKEIDKRCQHKIAEMVA--LMEKHKHqYDKIIEERDSELglyKSKEQEQSSLRASLEIELSNL--KAELLSV 745
Cdd:PRK00409 582 AkKEADEIIKELRQLQKGGYASVKAheLIEARKR-LNKANEKKEKKK---KKQKEKQEELKVGDEVKYLSLgqKGEVLSI 657
|
170 180 190
....*....|....*....|....*....|....*...
gi 530363230 746 KKQLEIEREE---KEKLKREAKENTATLKEKKDKKTQT 780
Cdd:PRK00409 658 PDDKEAIVQAgimKMKVPLSDLEKIQKPKKKKKKKPKT 695
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
208-595 |
1.64e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 208 EELRVQAEnSRLEMHFKLKEDYEKIQHLEQEYKKEINdkekqVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKL 287
Cdd:PRK04863 789 EQLRAERE-ELAERYATLSFDVQKLQRLHQAFSRFIG-----SHLAVAFEADPEAELRQLNRRRVELERALADHESQEQQ 862
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 288 QSENLKQSIEKQHHLTKELEDIKVslqrsvstqkaLEEDlqiatkTICQLTEEKETQMEESNKARAahsfVVTEFETTVC 367
Cdd:PRK04863 863 QRSQLEQAKEGLSALNRLLPRLNL-----------LADE------TLADRVEEIREQLDEAEEAKR----FVQQHGNALA 921
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 368 SLEELLRTEQQRLEKNEdqlkiltmELQKKSSELEEMTKLTNNKEVELEELKKVlgeKETLLYENkqfekiAEELKGTEQ 447
Cdd:PRK04863 922 QLEPIVSVLQSDPEQFE--------QLKQDYQQAQQTQRDAKQQAFALTEVVQR---RAHFSYED------AAEMLAKNS 984
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 448 ELIGLLQAREKEV-HDLEIQLTAITTSEQYYSKEVKDLkteleneklknTELTSHCNKLSLENKELTQETSDMTLelknq 526
Cdd:PRK04863 985 DLNEKLRQRLEQAeQERTRAREQLRQAQAQLAQYNQVL-----------ASLKSSYDAKRQMLQELKQELQDLGV----- 1048
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530363230 527 QEDINNNKKQEERMLKQIENLQETETQlRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNK 595
Cdd:PRK04863 1049 PADSGAEERARARRDELHARLSANRSR-RNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKA 1116
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
374-724 |
1.66e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 374 RTEQQRLEKNEDQLkiLTMELQKKSSELEEMTKLTNN---KEVELEELKKVLGEKETLLYE-NKQFEKIAEELKGTEQEl 449
Cdd:pfam17380 287 RQQQEKFEKMEQER--LRQEKEEKAREVERRRKLEEAekaRQAEMDRQAAIYAEQERMAMErERELERIRQEERKRELE- 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 450 igllQAREKEVhdleiqltaitTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQed 529
Cdd:pfam17380 364 ----RIRQEEI-----------AMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIR-- 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 530 innnKKQEERMLKQIENLQETETQlrnELEYVREELKQKRDEVKckldkseencnNLRKQVENKNKYIEELQQEnkalkk 609
Cdd:pfam17380 427 ----AEQEEARQREVRRLEEERAR---EMERVRLEEQERQQQVE-----------RLRQQEEERKRKKLELEKE------ 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 610 kgtaESKQLNVYEIKVNKLELELESAKQKFgeITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRcqHKI 689
Cdd:pfam17380 483 ----KRDRKRAEEQRRKILEKELEERKQAM--IEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER--RRI 554
|
330 340 350
....*....|....*....|....*....|....*
gi 530363230 690 AEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQ 724
Cdd:pfam17380 555 QEQMRKATEERSRLEAMEREREMMRQIVESEKARA 589
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
542-683 |
1.85e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 542 KQIENLQETETQLRNELEyvreELKQKRDEVKCKLDKSEENCNNLRKQV-ENKNKYIEELQQENKALKKKGTAESKQLNV 620
Cdd:COG4913 288 RRLELLEAELEELRAELA----RLEAELERLEARLDALREELDELEAQIrGNGGDRLEQLEREIERLERELEERERRRAR 363
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 530363230 621 YEIKVNKLELELESAKQKFGEItdtyQKEIEDKKISEENLLEEVEKAKV-IADEAVKLQKEIDK 683
Cdd:COG4913 364 LEALLAALGLPLPASAEEFAAL----RAEAAALLEALEEELEALEEALAeAEAALRDLRRELRE 423
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
187-311 |
2.47e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.74 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 187 EETRQVYMDLNNNIEKMITAFEELRVQAENSRLEMHF------KLKEDYEK------------IQHLEQEYKKEINDKEK 248
Cdd:PRK00409 505 EEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEAllkeaeKLKEELEEkkeklqeeedklLEEAEKEAQQAIKEAKK 584
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 530363230 249 QVSLLLIQITEKEnKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLtKELEDIKV 311
Cdd:PRK00409 585 EADEIIKELRQLQ-KGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEEL-KVGDEVKY 645
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
107-759 |
2.48e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.99 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 107 AELRQKESKLQENRKIIEAQRKA----IQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLKETCARsaEKTKKY 182
Cdd:COG5022 810 KEYRSYLACIIKLQKTIKREKKLreteEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAE--RQLQEL 887
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 183 EYEREETRQVYmDLNNNIEKMITafeELRVQAENS-RLEMHFKLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKE 261
Cdd:COG5022 888 KIDVKSISSLK-LVNLELESEII---ELKKSLSSDlIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVE 963
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 262 NKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEdLQIATKTICQLTEEK 341
Cdd:COG5022 964 SKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAE-LQSASKIISSESTEL 1042
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 342 ETQMEESNkaraahsfvvtefettvcsLEELLRTEQQRLEKNEDQLKiLTMELQKKSSELEEMTKLTNNKEVELEELKKV 421
Cdd:COG5022 1043 SILKPLQK-------------------LKGLLLLENNQLQARYKALK-LRRENSLLDDKQLYQLESTENLLKTINVKDLE 1102
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 422 LGEKETLLYENKQFEKIAEELK-GTEQELIGLLqarEKEVHDLEI--QLTAITTSEQYYSKEVKDLKTELENEKLKNT-- 496
Cdd:COG5022 1103 VTNRNLVKPANVLQFIVAQMIKlNLLQEISKFL---SQLVNTLEPvfQKLSVLQLELDGLFWEANLEALPSPPPFAALse 1179
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 497 ELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNN---KKQEERMLKQIENLQETETQLrNELEYVREELKQKRDEVK 573
Cdd:COG5022 1180 KRLYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGwprGDKLKKLISEGWVPTEYSTSL-KGFNNLNKKFDTPASMSN 1258
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 574 CKL-DKSEENCNNLRKQVENKNKYIEELQQENKALKkkgtaeSKQLNVYEIKVNKLELELESAKQKFGEITDTY--QKEI 650
Cdd:COG5022 1259 EKLlSLLNSIDNLLSSYKLEEEVLPATINSLLQYIN------VGLFNALRTKASSLRWKSATEVNYNSEELDDWcrEFEI 1332
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 651 EDKKISEENLLEEVEKAKVIADEAVKLQKEIDKRCQHKIAEMVALMEKHK-----HQYDKIIEERDSELGLyKSKEQEQS 725
Cdd:COG5022 1333 SDVDEELEELIQAVKVLQLLKDDLNKLDELLDACYSLNPAEIQNLKSRYDpadkeNNLPKEILKKIEALLI-KQELQLSL 1411
|
650 660 670
....*....|....*....|....*....|....*..
gi 530363230 726 SLRASLE---IELSNLKAELLSVKKQLEIEREEKEKL 759
Cdd:COG5022 1412 EGKDETEvhlSEIFSEEKSLISLDRNSIYKEEVLSSL 1448
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
653-773 |
4.83e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.53 E-value: 4.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 653 KKISEENLLEEVEKAKVIADEAvklQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELG-LYKSKEQEQSSLRASL 731
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRILEEA---KKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQkLEKRLLQKEENLDRKL 102
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 530363230 732 EiELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEK 773
Cdd:PRK12704 103 E-LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
|
|
| PRK00106 |
PRK00106 |
ribonuclease Y; |
504-690 |
5.49e-03 |
|
ribonuclease Y;
Pssm-ID: 178867 [Multi-domain] Cd Length: 535 Bit Score: 40.62 E-value: 5.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 504 KLSLENKELT-----QETSDMTLELKNQQEDINNNKKQEERMLKQiENLQETETQLRNELEYVREELKQKRDEVKCKLDK 578
Cdd:PRK00106 27 KSAKEAAELTllnaeQEAVNLRGKAERDAEHIKKTAKRESKALKK-ELLLEAKEEARKYREEIEQEFKSERQELKQIESR 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 579 SEENCNNLRKQVENKNKYIEELQQENKALKKKgtaeSKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKiSEE 658
Cdd:PRK00106 106 LTERATSLDRKDENLSSKEKTLESKEQSLTDK----SKHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAE-TEN 180
|
170 180 190
....*....|....*....|....*....|....*..
gi 530363230 659 NLLEEV-----EKAKVIADEAVKLQKEIDKRCQHKIA 690
Cdd:PRK00106 181 KLTHEIatrirEAEREVKDRSDKMAKDLLAQAMQRLA 217
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
374-749 |
6.59e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.42 E-value: 6.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 374 RTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYE---------------------N 432
Cdd:TIGR00606 206 QMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKimkldneikalksrkkqmekdN 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 433 KQFEKIAEE-LKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDL---KTELENE----KLKNTELTSHCNK 504
Cdd:TIGR00606 286 SELELKMEKvFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLnqeKTELLVEqgrlQLQADRHQEHIRA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 505 LSLENKEL-------------------------------------TQETSDMTLELKNQQEDINNNKKQEERMLKQIENL 547
Cdd:TIGR00606 366 RDSLIQSLatrleldgfergpfserqiknfhtlvierqedeaktaAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELK 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 548 QETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRK-QVENKNKYIEELQQENKALKKKGTAESKQLNVYEIKVN 626
Cdd:TIGR00606 446 KEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERElSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEME 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 627 KLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKA------KVIADEAVKLQKEIDKRCQH--KIAEMVALMEK 698
Cdd:TIGR00606 526 QLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLgyfpnkKQLEDWLHSKSKEINQTRDRlaKLNKELASLEQ 605
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 530363230 699 HKHQYDKIIEERDSELGLYKSKEQEQSSLRAsLEIELSNLKAELLSVKKQL 749
Cdd:TIGR00606 606 NKNHINNELESKEEQLSSYEDKLFDVCGSQD-EESDLERLKEEIEKSSKQR 655
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
77-506 |
7.53e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 40.27 E-value: 7.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 77 LEQNSEGLSRVYSKLYKEAEKIKKWkvsteAELRQKESKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIK 156
Cdd:PRK01156 307 IENKKQILSNIDAEINKYHAIIKKL-----SVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEE 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 157 ENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMITAFEELRVQAENSRLEMHFKLKEDY------- 229
Cdd:PRK01156 382 YSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVcpvcgtt 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 230 ---EKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEesrdkvnQLEEKTKLQSENLKQSIEKQHHltkEL 306
Cdd:PRK01156 462 lgeEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKE-------YLESEEINKSINEYNKIESARA---DL 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 307 EDIKVSLQRSVSTQ-KALEEDLQIATKTIcqltEEKETQMEESNKARAAHSFVVTEfettvcsleellrTEQQRLEKNED 385
Cdd:PRK01156 532 EDIKIKINELKDKHdKYEEIKNRYKSLKL----EDLDSKRTSWLNALAVISLIDIE-------------TNRSRSNEIKK 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 386 QLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYENK-QFEKIAEELKGTEQELIGlLQAREKEVHDLE 464
Cdd:PRK01156 595 QLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKiLIEKLRGKIDNYKKQIAE-IDSIIPDLKEIT 673
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 530363230 465 IQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTSHCNKLS 506
Cdd:PRK01156 674 SRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELS 715
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
271-459 |
7.64e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 7.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 271 LEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLTEEKETQMEESNK 350
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 351 ARAAHSFV--------VTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVL 422
Cdd:COG3883 98 SGGSVSYLdvllgsesFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQ 177
|
170 180 190
....*....|....*....|....*....|....*..
gi 530363230 423 GEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKE 459
Cdd:COG3883 178 AEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
195-459 |
7.69e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 7.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 195 DLNNNIEKMITAFEELRvqaensrlEMHFKLKEDYEKIQHLE------QEYKKEINDKEKQVSLLLI--------QITEK 260
Cdd:COG4913 222 DTFEAADALVEHFDDLE--------RAHEALEDAREQIELLEpirelaERYAAARERLAELEYLRAAlrlwfaqrRLELL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 261 ENKMKDLTFLLEESRDKVNQLEEKTKLQSENLkQSIEKQH--HLTKELEDIKVSLQRSVSTQKALEEDLQIATKTICQLT 338
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREEL-DELEAQIrgNGGDRLEQLEREIERLERELEERERRRARLEALLAALG 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 339 EEKETQMEESNKARAahsfvvtEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEEL 418
Cdd:COG4913 373 LPLPASAEEFAALRA-------EAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL 445
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 530363230 419 KKVlgeketllyenkqfekIAEELKGTEQEL--IG-LLQAREKE 459
Cdd:COG4913 446 RDA----------------LAEALGLDEAELpfVGeLIEVRPEE 473
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
256-475 |
9.09e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.43 E-value: 9.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 256 QITEKENKMKDLTFLLEESRDKVNQLEEKtklqsenlkqsIEKqhhLTKELEDIKVSLQRSVSTQKALEEDLQIATKTIC 335
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAE-----------LEE---LNEEYNELQAELEALQAEIDKLQAEIAEAEAEIE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 336 QLTEEKETQMEESNKARAAHSFVVTEFETTvcSLEELLrteqqrlekneDQLKILTMELQKKSSELEEMTKLTNNKEVEL 415
Cdd:COG3883 83 ERREELGERARALYRSGGSVSYLDVLLGSE--SFSDFL-----------DRLSALSKIADADADLLEELKADKAELEAKK 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 416 EELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQ 475
Cdd:COG3883 150 AELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
392-744 |
9.54e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 39.89 E-value: 9.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 392 MELQKKSSELEE------MTKLTNNKEVELEELKKVlGEKETLLyeNKQFEKIAEELKGTEQELIGLLQAREKEVHDLEi 465
Cdd:PLN02939 84 MELPQKSTSSDDdhnrasMQRDEAIAAIDNEQQTNS-KDGEQLS--DFQLEDLVGMIQNAEKNILLLNQARLQALEDLE- 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 466 qltAITTSEQYYSKEVKDLKTELENeklkntelTSHCNKLSLENKELTQETSDMTLELKNQ-QEDINNNKKQEERMLKQI 544
Cdd:PLN02939 160 ---KILTEKEALQGKINILEMRLSE--------TDARIKLAAQEKIHVEILEEQLEKLRNElLIRGATEGLCVHSLSKEL 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 545 ENLQETETQLRNELEYVREELkqkrDEVKckldKSEENCNNLRKQVENKNKYIEELQQENKALKKK-GTAESKQLNVYEI 623
Cdd:PLN02939 229 DVLKEENMLLKDDIQFLKAEL----IEVA----ETEERVFKLEKERSLLDASLRELESKFIVAQEDvSKLSPLQYDCWWE 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530363230 624 KVNKLELELESAKQKFGEITDTYQK--EIEDKKISEENLLEEVEKAKV------IADEAVKLQKEIDKRCQHKIAEMVAL 695
Cdd:PLN02939 301 KVENLQDLLDRATNQVEKAALVLDQnqDLRDKVDKLEASLKEANVSKFssykveLLQQKLKLLEERLQASDHEIHSYIQL 380
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 530363230 696 mekhkhqYDKIIEERDSELGlyKSKEQeqsSLRASLEIELSNLKAELLS 744
Cdd:PLN02939 381 -------YQESIKEFQDTLS--KLKEE---SKKRSLEHPADDMPSEFWS 417
|
|
| |
