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Conserved domains on  [gi|530396423|ref|XP_005273880|]
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large ribosomal subunit protein bL21m isoform X1 [Homo sapiens]

Protein Classification

bL21 family ribosomal protein( domain architecture ID 10467150)

bL21 family ribosomal protein is a structural component of the plastid, mitochondrial, or bacterial ribosome, which is involved in protein synthesis

PubMed:  24524803
SCOP:  4001630

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Ribosomal_L21p pfam00829
Ribosomal prokaryotic L21 protein;
96-178 5.39e-16

Ribosomal prokaryotic L21 protein;


:

Pssm-ID: 459952  Cd Length: 99  Bit Score: 71.64  E-value: 5.39e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396423   96 FAVVHFASRQWKVTSEDLILIgNELDLACGERIRLEKVLLVGaDNFTLLGKPLLGKdlVRVEATVIEKTESWPRIIMRFR 175
Cdd:pfam00829   1 YAIIETGGKQYKVTEGDVIKV-EKLDAEVGDTVELDKVLLVG-RVFTKVGAPYVEG--AKVTATVVEHGKGKKVIVFKYK 76

                  ...
gi 530396423  176 KRK 178
Cdd:pfam00829  77 RRK 79
 
Name Accession Description Interval E-value
Ribosomal_L21p pfam00829
Ribosomal prokaryotic L21 protein;
96-178 5.39e-16

Ribosomal prokaryotic L21 protein;


Pssm-ID: 459952  Cd Length: 99  Bit Score: 71.64  E-value: 5.39e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396423   96 FAVVHFASRQWKVTSEDLILIgNELDLACGERIRLEKVLLVGaDNFTLLGKPLLGKdlVRVEATVIEKTESWPRIIMRFR 175
Cdd:pfam00829   1 YAIIETGGKQYKVTEGDVIKV-EKLDAEVGDTVELDKVLLVG-RVFTKVGAPYVEG--AKVTATVVEHGKGKKVIVFKYK 76

                  ...
gi 530396423  176 KRK 178
Cdd:pfam00829  77 RRK 79
rplU PRK05573
50S ribosomal protein L21; Validated
96-162 2.01e-06

50S ribosomal protein L21; Validated


Pssm-ID: 235510  Cd Length: 103  Bit Score: 45.48  E-value: 2.01e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530396423  96 FAVVHFASRQWKVTSEDLILIgNELDLACGERIRLEKVLLVGADNFTLLGKPLLGKdlVRVEATVIE 162
Cdd:PRK05573   2 YAIIKTGGKQYKVEEGDVIKV-EKLDAEVGDTVEFDEVLLVGGGEEVKIGAPYVEG--AKVTAEVVE 65
L21 TIGR00061
ribosomal protein L21; Eubacterial and chloroplast. [Protein synthesis, Ribosomal proteins: ...
96-162 8.08e-05

ribosomal protein L21; Eubacterial and chloroplast. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 129171  Cd Length: 101  Bit Score: 40.84  E-value: 8.08e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530396423   96 FAVVHFASRQWKVTSEDLILIgNELDLACGERIRLEKVLLVGADNFTLLGKPLLGKdlVRVEATVIE 162
Cdd:TIGR00061   1 YAIVEIGGKQYKVEEGQTVRI-EKLDAAPGETVEFDKVLMVNKGDDVKIGKPYVEG--AKVVAEVEK 64
 
Name Accession Description Interval E-value
Ribosomal_L21p pfam00829
Ribosomal prokaryotic L21 protein;
96-178 5.39e-16

Ribosomal prokaryotic L21 protein;


Pssm-ID: 459952  Cd Length: 99  Bit Score: 71.64  E-value: 5.39e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396423   96 FAVVHFASRQWKVTSEDLILIgNELDLACGERIRLEKVLLVGaDNFTLLGKPLLGKdlVRVEATVIEKTESWPRIIMRFR 175
Cdd:pfam00829   1 YAIIETGGKQYKVTEGDVIKV-EKLDAEVGDTVELDKVLLVG-RVFTKVGAPYVEG--AKVTATVVEHGKGKKVIVFKYK 76

                  ...
gi 530396423  176 KRK 178
Cdd:pfam00829  77 RRK 79
rplU PRK05573
50S ribosomal protein L21; Validated
96-162 2.01e-06

50S ribosomal protein L21; Validated


Pssm-ID: 235510  Cd Length: 103  Bit Score: 45.48  E-value: 2.01e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530396423  96 FAVVHFASRQWKVTSEDLILIgNELDLACGERIRLEKVLLVGADNFTLLGKPLLGKdlVRVEATVIE 162
Cdd:PRK05573   2 YAIIKTGGKQYKVEEGDVIKV-EKLDAEVGDTVEFDEVLLVGGGEEVKIGAPYVEG--AKVTAEVVE 65
L21 TIGR00061
ribosomal protein L21; Eubacterial and chloroplast. [Protein synthesis, Ribosomal proteins: ...
96-162 8.08e-05

ribosomal protein L21; Eubacterial and chloroplast. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 129171  Cd Length: 101  Bit Score: 40.84  E-value: 8.08e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530396423   96 FAVVHFASRQWKVTSEDLILIgNELDLACGERIRLEKVLLVGADNFTLLGKPLLGKdlVRVEATVIE 162
Cdd:TIGR00061   1 YAIVEIGGKQYKVEEGQTVRI-EKLDAAPGETVEFDKVLMVNKGDDVKIGKPYVEG--AKVVAEVEK 64
PRK12278 PRK12278
50S ribosomal protein L21;
95-162 6.60e-04

50S ribosomal protein L21;


Pssm-ID: 237034 [Multi-domain]  Cd Length: 221  Bit Score: 40.23  E-value: 6.60e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530396423  95 LFAVVHFASRQWKVTSEDLILIgNELDLACGERIRLEKVLLVGADNFTLLGKPLLgkDLVRVEATVIE 162
Cdd:PRK12278   1 MFAVIKTGGKQYKVQAGDLLRV-EKLAAEAGETVQFGEVLMLGEGDNVTVGAPFV--DGAAVQAEVIE 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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