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Conserved domains on  [gi|530396898|ref|XP_005274110|]
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uncharacterized protein C11orf24 isoform X1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5585 super family cl39316
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 1-449 6.26e-102

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


The actual alignment was detected with superfamily member pfam17823:

Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 313.43  E-value: 6.26e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898    1 MWTALVLIWIFSLSLSESHAASNDPRNFVPNKMWKGLVKRNASVETV---DNKTSED----VTMAAASPVTLTKGTSAAH 73
Cdd:pfam17823   1 MWTALVLIWIFSLPLSESHAAPADPRHFVLNKMWNGAGKQNASGDAVpraDNKSSEQ*nfcAATAAPAPVTLTKGTSAAH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898   74 LNSMEVTTEDTSR-TDVSEPATSGGAADGVTSIAPTAVASSTTAASITTAASSM--------------------TVASSA 132
Cdd:pfam17823  81 LNSTEVTAEHTPHgTDLSEPATREGAADGAASRALAAAASSSPSSAAQSLPAAIaalpseafsapraaacranaSAAPRA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  133 PTTAASSTTVASIAPTTAASSMTAASSTPMTLALPAPTSTST--------GRTPSTTATGHPSLSTALAQVPKSSALPRT 204
Cdd:pfam17823 161 AIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSApatltparGISTAATATGHPAAGTALAAVGNSSPAAGT 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  205 ----------ATLATLATRAQTVATTA---NTSSPMSTRPSPSKHMPSDTAA-SPVPPMRPQAQGPISQVSVDQPVVNTT 270
Cdd:pfam17823 241 vtaavgtvtpAALATLAAAAGTVASAAgtiNMGDPHARRLSPAKHMPSDTMArNPAAPMGAQAQGPIIQVSTDQPVHNTA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  271 NKSTPMPSNTTPEPAPTPTVVTT-------TKAQAREPTASPVPVPHTSPIPEMEAMSPTTQPSPMPYTQRAAGPGTSQA 343
Cdd:pfam17823 321 GEPTPSPSNTTLEPNTPKSVASTnlavvttTKAQAKEPSASPVPVLHTSMIPEVEATSPTTQPSPLLPTQGAAGPGILLA 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  344 PEQVETEATPGTDSTGPTPRSSGGTKMPATDSCQPSTQGQYMVVTTEPLTQAVVDKTLLLVVLLLGVTLFITVLVLFALQ 423
Cdd:pfam17823 401 PEQVATEATAGTASAGPTPRSSGDPKTLAMASCQLSTQGQYLVVTTDPLTPALVDKMFLLVVLILGMTLFIAVLMLFALQ 480

                         490       500
                  ....*....|....*....|....*.
gi 530396898  424 AYESYKKKDYTQVDYLINGMYADSEM 449
Cdd:pfam17823 481 AYESYKKKDYTQVDYLINEMYADSEM 506
 
Name Accession Description Interval E-value
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 1-449 6.26e-102

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 313.43  E-value: 6.26e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898    1 MWTALVLIWIFSLSLSESHAASNDPRNFVPNKMWKGLVKRNASVETV---DNKTSED----VTMAAASPVTLTKGTSAAH 73
Cdd:pfam17823   1 MWTALVLIWIFSLPLSESHAAPADPRHFVLNKMWNGAGKQNASGDAVpraDNKSSEQ*nfcAATAAPAPVTLTKGTSAAH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898   74 LNSMEVTTEDTSR-TDVSEPATSGGAADGVTSIAPTAVASSTTAASITTAASSM--------------------TVASSA 132
Cdd:pfam17823  81 LNSTEVTAEHTPHgTDLSEPATREGAADGAASRALAAAASSSPSSAAQSLPAAIaalpseafsapraaacranaSAAPRA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  133 PTTAASSTTVASIAPTTAASSMTAASSTPMTLALPAPTSTST--------GRTPSTTATGHPSLSTALAQVPKSSALPRT 204
Cdd:pfam17823 161 AIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSApatltparGISTAATATGHPAAGTALAAVGNSSPAAGT 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  205 ----------ATLATLATRAQTVATTA---NTSSPMSTRPSPSKHMPSDTAA-SPVPPMRPQAQGPISQVSVDQPVVNTT 270
Cdd:pfam17823 241 vtaavgtvtpAALATLAAAAGTVASAAgtiNMGDPHARRLSPAKHMPSDTMArNPAAPMGAQAQGPIIQVSTDQPVHNTA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  271 NKSTPMPSNTTPEPAPTPTVVTT-------TKAQAREPTASPVPVPHTSPIPEMEAMSPTTQPSPMPYTQRAAGPGTSQA 343
Cdd:pfam17823 321 GEPTPSPSNTTLEPNTPKSVASTnlavvttTKAQAKEPSASPVPVLHTSMIPEVEATSPTTQPSPLLPTQGAAGPGILLA 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  344 PEQVETEATPGTDSTGPTPRSSGGTKMPATDSCQPSTQGQYMVVTTEPLTQAVVDKTLLLVVLLLGVTLFITVLVLFALQ 423
Cdd:pfam17823 401 PEQVATEATAGTASAGPTPRSSGDPKTLAMASCQLSTQGQYLVVTTDPLTPALVDKMFLLVVLILGMTLFIAVLMLFALQ 480

                         490       500
                  ....*....|....*....|....*.
gi 530396898  424 AYESYKKKDYTQVDYLINGMYADSEM 449
Cdd:pfam17823 481 AYESYKKKDYTQVDYLINEMYADSEM 506
PHA03247 PHA03247
large tegument protein UL36; Provisional
 133-391 1.50e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 60.72  E-value: 1.50e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  133 PTTAASSTTVASIAPTTAASSMTAASSTPMTLALPAPTSTSTGrtPSTTATGHPSLSTALAQVPKSSALPRTAtlATLAT 212
Cdd:PHA03247 2705 PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAG--PATPGGPARPARPPTTAGPPAPAPPAAP--AAGPP 2780

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  213 RAQTVATTANTSSPMSTRPSPSKHMPSDTAASPVPPMRPQAQGPISQVSVDQPVVNTTNKSTPMPSntTPEPAPTPTVVT 292
Cdd:PHA03247 2781 RRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPP--PPSLPLGGSVAP 2858

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  293 TTKAQAREPTASPVPVPHTSPIPEME-----AMSPTTQPSPMPYTQRAAGPGTSQAPEQVETEATPGTDSTGPTPRSSGG 367
Cdd:PHA03247 2859 GGDVRRRPPSRSPAAKPAAPARPPVRrlarpAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPR 2938

                         250       260
                  ....*....|....*....|....
gi 530396898  368 TKMPATDSCQPSTQGQYMVVTTEP 391
Cdd:PHA03247 2939 PQPPLAPTTDPAGAGEPSGAVPQP 2962
 
Name Accession Description Interval E-value
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 1-449 6.26e-102

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 313.43  E-value: 6.26e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898    1 MWTALVLIWIFSLSLSESHAASNDPRNFVPNKMWKGLVKRNASVETV---DNKTSED----VTMAAASPVTLTKGTSAAH 73
Cdd:pfam17823   1 MWTALVLIWIFSLPLSESHAAPADPRHFVLNKMWNGAGKQNASGDAVpraDNKSSEQ*nfcAATAAPAPVTLTKGTSAAH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898   74 LNSMEVTTEDTSR-TDVSEPATSGGAADGVTSIAPTAVASSTTAASITTAASSM--------------------TVASSA 132
Cdd:pfam17823  81 LNSTEVTAEHTPHgTDLSEPATREGAADGAASRALAAAASSSPSSAAQSLPAAIaalpseafsapraaacranaSAAPRA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  133 PTTAASSTTVASIAPTTAASSMTAASSTPMTLALPAPTSTST--------GRTPSTTATGHPSLSTALAQVPKSSALPRT 204
Cdd:pfam17823 161 AIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSApatltparGISTAATATGHPAAGTALAAVGNSSPAAGT 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  205 ----------ATLATLATRAQTVATTA---NTSSPMSTRPSPSKHMPSDTAA-SPVPPMRPQAQGPISQVSVDQPVVNTT 270
Cdd:pfam17823 241 vtaavgtvtpAALATLAAAAGTVASAAgtiNMGDPHARRLSPAKHMPSDTMArNPAAPMGAQAQGPIIQVSTDQPVHNTA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  271 NKSTPMPSNTTPEPAPTPTVVTT-------TKAQAREPTASPVPVPHTSPIPEMEAMSPTTQPSPMPYTQRAAGPGTSQA 343
Cdd:pfam17823 321 GEPTPSPSNTTLEPNTPKSVASTnlavvttTKAQAKEPSASPVPVLHTSMIPEVEATSPTTQPSPLLPTQGAAGPGILLA 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  344 PEQVETEATPGTDSTGPTPRSSGGTKMPATDSCQPSTQGQYMVVTTEPLTQAVVDKTLLLVVLLLGVTLFITVLVLFALQ 423
Cdd:pfam17823 401 PEQVATEATAGTASAGPTPRSSGDPKTLAMASCQLSTQGQYLVVTTDPLTPALVDKMFLLVVLILGMTLFIAVLMLFALQ 480

                         490       500
                  ....*....|....*....|....*.
gi 530396898  424 AYESYKKKDYTQVDYLINGMYADSEM 449
Cdd:pfam17823 481 AYESYKKKDYTQVDYLINEMYADSEM 506
PHA03247 PHA03247
large tegument protein UL36; Provisional
 133-391 1.50e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 60.72  E-value: 1.50e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  133 PTTAASSTTVASIAPTTAASSMTAASSTPMTLALPAPTSTSTGrtPSTTATGHPSLSTALAQVPKSSALPRTAtlATLAT 212
Cdd:PHA03247 2705 PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAG--PATPGGPARPARPPTTAGPPAPAPPAAP--AAGPP 2780

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  213 RAQTVATTANTSSPMSTRPSPSKHMPSDTAASPVPPMRPQAQGPISQVSVDQPVVNTTNKSTPMPSntTPEPAPTPTVVT 292
Cdd:PHA03247 2781 RRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPP--PPSLPLGGSVAP 2858

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  293 TTKAQAREPTASPVPVPHTSPIPEME-----AMSPTTQPSPMPYTQRAAGPGTSQAPEQVETEATPGTDSTGPTPRSSGG 367
Cdd:PHA03247 2859 GGDVRRRPPSRSPAAKPAAPARPPVRrlarpAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPR 2938

                         250       260
                  ....*....|....*....|....
gi 530396898  368 TKMPATDSCQPSTQGQYMVVTTEP 391
Cdd:PHA03247 2939 PQPPLAPTTDPAGAGEPSGAVPQP 2962
PHA03247 PHA03247
large tegument protein UL36; Provisional
 50-393 5.81e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.17  E-value: 5.81e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898   50 KTSEDVTMAAASPVTLTKGTSAAHLNSMEVTTEDTSRTDVSEPATSGG----AADGVTSIAPTAVASSTTAASITTAASS 125
Cdd:PHA03247 2706 PTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGparpARPPTTAGPPAPAPPAAPAAGPPRRLTR 2785

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  126 MTVASSAPTTAASSTTVASIAPTTAASSMTAASSTPMTLALPAPTSTSTGRTPSTTATG--HPSLSTALAQVPKSSALPR 203
Cdd:PHA03247 2786 PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGppPPSLPLGGSVAPGGDVRRR 2865

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  204 TATLATLAT-------RAQTVATTANTSSPMSTRPSPSKHMPSDTAASPVPPmRPQAQGPISQVSVDQPVVNTTNKSTPM 276
Cdd:PHA03247 2866 PPSRSPAAKpaaparpPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPP-QPQPQPPPPPQPQPPPPPPPRPQPPLA 2944

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  277 PSNTTPEPAPTPTVVTTTKAQAREPTASPVPVPHT-SPIPEMEAMSPTTQPSPMPYTQRAAGPGTSQApeqVETEATPGT 355
Cdd:PHA03247 2945 PTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVpQPAPSREAPASSTPPLTGHSLSRVSSWASSLA---LHEETDPPP 3021

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 530396898  356 DSTGPTPRSSGGTKMPATDSCQPSTQGQYMVVTTEPLT 393
Cdd:PHA03247 3022 VSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLP 3059
PHA03247 PHA03247
large tegument protein UL36; Provisional
 129-371 1.48e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 1.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  129 ASSAPTTAASSTTVASIAPTTAASSMTAASSTPMTLALPAPTSTStgRTPSTTATGHPSLSTALAQVPKSSALPRTATLA 208
Cdd:PHA03247 2609 RGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPR--DDPAPGRVSRPRRARRLGRAAQASSPPQRPRRR 2686

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  209 TLATraqTVATTANTSSPMSTRPSPSKHMPSDTAASPVPPMrPQAQGPISQVSVDQPVVNTTNKSTPMPSNTTPEPAPTP 288
Cdd:PHA03247 2687 AARP---TVGSLTSLADPPPPPPTPEPAPHALVSATPLPPG-PAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPT 2762

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  289 TVVTTTKAQAREPTASPVPVPHTSPIPEMEAMSPTTQPSPMPYTQRAAGPGTSQAPEQVETEATPGTDSTGPTPRSSGGT 368
Cdd:PHA03247 2763 TAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPP 2842


                  ...
gi 530396898  369 KMP 371
Cdd:PHA03247 2843 PGP 2845
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
91-256 7.18e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 45.23  E-value: 7.18e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  91 EPATSGGAADGVtsiAPTAVASSTTAASITTAASSMTVASSAPTTAASSTTVASIAPTTAASSMTAASSTPMTLALPAPT 170
Cdd:PRK07003 359 EPAVTGGGAPGG---GVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPAT 435

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898 171 STSTGRT---PSTTATGHPSLSTALAQVPKSSALPRTATLATLATRAQTVATTANTSSPMSTRPSPSKHMPSDTAASPVP 247
Cdd:PRK07003 436 ADRGDDAadgDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAA 515


                 ....*....
gi 530396898 248 PMRPQAQGP 256
Cdd:PRK07003 516 ASREDAPAA 524
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 185-353 2.11e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 43.70  E-value: 2.11e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898 185 HPSLSTALAQVPKSSALPRTATLATLATRAQTVATTANTSspmstrPSPSKHMPSDTAASPVPPMRPQAQGPISQVSVDQ 264
Cdd:PRK07994 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAV------PPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQ 433

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898 265 PVVnTTNKSTPMPSNTTPEPAPtptvvtttkAQAREPTASPVPVPHTSPIPEMEAMSPTTQPSPMPYTQRAAGPgtSQAP 344
Cdd:PRK07994 434 GAT-KAKKSEPAAASRARPVNS---------ALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATP--KALK 501


                 ....*....
gi 530396898 345 EQVETEATP 353
Cdd:PRK07994 502 KALEHEKTP 510
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
92-339 3.14e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.33  E-value: 3.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  92 PATSGGAAdgvtsiAPTAVASSTTAASITTAASSMTVASSAPTTAASSTTVASIAPTTAASSMTAASSTPMTLALPAPTS 171
Cdd:PRK12323 365 PGQSGGGA------GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQ 438

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898 172 TSTGRTPSTTATGHPSLSTALAQVPKSSALPRTAtlATLATRAQTVATTANTSSPMSTRPSPSKHMPSDTaasPVPPMRP 251
Cdd:PRK12323 439 ASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPV--AAAAAAAPARAAPAAAPAPADDDPPPWEELPPEF---ASPAPAQ 513

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898 252 QAQGPISQVSVDQPVVNTTNKSTPMPsnttpepaptptvvtttkAQAREPTASPVPVPHTSPIPEMEAMSPTTQPSPMPY 331
Cdd:PRK12323 514 PDAAPAGWVAESIPDPATADPDDAFE------------------TLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPD 575


                 ....*...
gi 530396898 332 TQRAAGPG 339
Cdd:PRK12323 576 MFDGDWPA 583
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
178-367 4.07e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.91  E-value: 4.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898 178 PSTTATGHPSlstALAQVPKSSALPRTATLATLATRAQTVATTANTSSPMSTRPSPSKHMPSDTAASPVPPMRPQAQGPI 257
Cdd:PRK07003 360 PAVTGGGAPG---GGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATA 436

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898 258 SQVSVDQPVVNTTNKSTPMPSNTTPEPAPTPTVVTTTKAQAREPTASPVPVPHTSPIPEMEAMSPTTQPSPMPYTQRAAG 337
Cdd:PRK07003 437 DRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAA 516

                        170       180       190
                 ....*....|....*....|....*....|..
gi 530396898 338 PGTSQ--APEQVETEATPGTDSTGPTPRSSGG 367
Cdd:PRK07003 517 SREDApaAAAPPAPEARPPTPAAAAPAARAGG 548
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
186-373 1.18e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.40  E-value: 1.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898 186 PSLSTALAQVPKSSALPRTAtlATLATRAQTVATTANTSSPMSTRPSPSKHMP------SDTAASPVPPMRPQAQGPISQ 259
Cdd:PRK12323 365 PGQSGGGAGPATAAAAPVAQ--PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAaravaaAPARRSPAPEALAAARQASAR 442

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898 260 VSVDQPVVNTTNKSTPMPSNTTPEPAPTPTVVTTTKAQAR-EPTASPVPVPHTSPIPEmeaMSPTTQPSPMPYTQRAA-- 336
Cdd:PRK12323 443 GPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARaAPAAAPAPADDDPPPWE---ELPPEFASPAPAQPDAApa 519

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 530396898 337 --------GPGTSQAPEQVETEATPGTDSTGPTPRSSGGTKMPAT 373
Cdd:PRK12323 520 gwvaesipDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPR 564
PHA03247 PHA03247
large tegument protein UL36; Provisional
 165-380 3.12e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 3.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  165 ALPAPTSTSTGRTPSTTATGHPSLSTALAQVPKSSALPRTATLATLATRAQTVATTANTSSPMSTRPSPSKHMPSDTAAS 244
Cdd:PHA03247 2567 SVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTV 2646

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898  245 PvPPMRPQAQGPISQVSVDQPVVNTTNKSTPMPSNTTPEPAPTPTVVTTTKAQAREPTASPVPVPHTSPipemeaMSPTT 324
Cdd:PHA03247 2647 P-PPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHA------LVSAT 2719

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 530396898  325 QPSPMPYTQRAAGPGTSQAP---EQVETEATPGTDSTGPTPRSSGGTKMPATDSCQPST 380
Cdd:PHA03247 2720 PLPPGPAAARQASPALPAAPappAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAG 2778
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
131-343 3.72e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.86  E-value: 3.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898 131 SAPTTAASSTTVASIAPTTAASSMTAASSTPMTLALPAPTSTSTGRTPSTTATGHPSLSTALAQVPKSSALPRTATLAtl 210
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPA-- 449

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898 211 atraqtvATTANTSSPMSTRPSPSKHMPSDTAASPVPPMRPQAQGPISQVSVDQP----VVNTTNKSTPMPSNTTPEPAP 286
Cdd:PRK12323 450 -------PAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPpweeLPPEFASPAPAQPDAAPAGWV 522

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 530396898 287 TPTVVTTTKAQAREPTASPVPVPHTSPIPEMEAmspTTQPSPMPYTQRAAGPGTSQA 343
Cdd:PRK12323 523 AESIPDPATADPDDAFETLAPAPAAAPAPRAAA---ATEPVVAPRPPRASASGLPDM 576
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 210-353 4.40e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 39.46  E-value: 4.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898 210 LATRAQTVATTANtSSPMSTRPSPSKHMPSDTAASPVPPMRPQAQGPISQVSVDQPvvnttnksTPMPSNTTPEPAPTPT 289
Cdd:PRK07994 357 LAFHPAAPLPEPE-VPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAP--------AVPLPETTSQLLAARQ 427

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898 290 VVTTTKAQAREPTASPVPVPHTSPIPEMEAMSPTTQPSPMPYTQRAAGPG------TSQAPEQVETEATP 353
Cdd:PRK07994 428 QLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEayrwkaTNPVEVKKEPVATP 497
PHA03378 PHA03378
EBNA-3B; Provisional
 174-372 8.41e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 38.51  E-value: 8.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898 174 TGRTPSTTATGHPSLSTALAQVPKSSALPRTATlatlaTRAQTVATTANTSSPMSTRPSPSKHM-----PSDTAASPVPP 248
Cdd:PHA03378 578 TSPTTSQLASSAPSYAQTPWPVPHPSQTPEPPT-----TQSHIPETSAPRQWPMPLRPIPMRPLrmqpiTFNVLVFPTPH 652

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898 249 MRPQAQGPISQVSVDQPVVNTTNKSTPMPSNTTPEPAPTPTVVTTTKAQAREPTASPVPVPHTSPIPEMEAMSPtTQPSP 328
Cdd:PHA03378 653 QPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARP-PAAAP 731

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 530396898 329 MPYTQRAAGPGTSQAPEQVETEATPGTDSTGPTPRSSGGTKMPA 372
Cdd:PHA03378 732 GRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPT 775
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 233-350 8.54e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 38.54  E-value: 8.54e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898 233 PSKHMPSDTAASPVPPMRPQAQ----GPISQVSVDQPVVNTTNKSTPMPSNTTPEPAPTPTVVTTTKAQAREPTASPVPV 308
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAapaaAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 530396898 309 PHTS-----PIPEMEAMSPTTQPSPMPYTQRAAGPGTSQAPEQVETE 350
Cdd:PRK14951 446 ALAPappaqAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
236-362 9.39e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 38.22  E-value: 9.39e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530396898 236 HMPSDTAASPVPPMRPQAQGPISQVSVDQPvvNTTNKSTPMPSNTTPEPAPTPTVVTTTKAQAREPTASPVPVPHTSPIP 315
Cdd:PRK14971 361 QLTQKGDDASGGRGPKQHIKPVFTQPAAAP--QPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN 438

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 530396898 316 EMEAMSPTTQPSPMPYTQRAA-------GPGTSQaPEQVETEATPGTDSTGPTP 362
Cdd:PRK14971 439 PPSTAPQAVRPAQFKEEKKIPvskvsslGPSTLR-PIQEKAEQATGNIKEAPTG 491
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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