NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|564331778|ref|XP_006230635|]
View 

shadow of prion protein isoform X2 [Rattus norvegicus]

Protein Classification

Shadoo domain-containing protein( domain architecture ID 10633204)

Shadoo domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Shadoo pfam14999
Shadow of prion protein, neuroprotective; This protein family is a Prion-like protein and its ...
 38-147 6.24e-40

Shadow of prion protein, neuroprotective; This protein family is a Prion-like protein and its function is neuroprotective and similar to PrP(C)-like. Shadoo is mainly expressed in the brain, and highly expressed in the hippocampus, the area of the brain which co-ordinates memory as well as spatial memory and navigation. This protein may also alter the biological actions of normal and abnormal Prion Protein (PrP) which lead to lethal neurodegenerative diseases. This family of proteins is found in eukaryotes. Proteins in this family are approximately 150 amino acids in length, of which the first 90 are alanine rich.


:

Pssm-ID: 373461  Cd Length: 133  Bit Score: 130.83  E-value: 6.24e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564331778   38 VRGGARGASRVRVRPAPRYS---SSLRVAAAGAAAGAAAGVAAGLATGSGWRRTSGPGELGLEDDENGAMGGNGTDRGVY 114
Cdd:pfam14999  21 LRGGARGASRVRVRPAPRYSaagSSLRVAAAGAAAGAAAGAAAGLAAGSGWRRATGPGEGGLEDDEDGAPGGNGTGRGVY 100

                          90       100       110
                  ....*....|....*....|....*....|...
gi 564331778  115 SYWAWTSGSGSVHSPRICLLLSGTLGALELLRP 147
Cdd:pfam14999 101 SYWAWTSGTGSTHHPPLCLLLGGALGALELLQP 133
 
Name Accession Description Interval E-value
Shadoo pfam14999
Shadow of prion protein, neuroprotective; This protein family is a Prion-like protein and its ...
 38-147 6.24e-40

Shadow of prion protein, neuroprotective; This protein family is a Prion-like protein and its function is neuroprotective and similar to PrP(C)-like. Shadoo is mainly expressed in the brain, and highly expressed in the hippocampus, the area of the brain which co-ordinates memory as well as spatial memory and navigation. This protein may also alter the biological actions of normal and abnormal Prion Protein (PrP) which lead to lethal neurodegenerative diseases. This family of proteins is found in eukaryotes. Proteins in this family are approximately 150 amino acids in length, of which the first 90 are alanine rich.


Pssm-ID: 373461  Cd Length: 133  Bit Score: 130.83  E-value: 6.24e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564331778   38 VRGGARGASRVRVRPAPRYS---SSLRVAAAGAAAGAAAGVAAGLATGSGWRRTSGPGELGLEDDENGAMGGNGTDRGVY 114
Cdd:pfam14999  21 LRGGARGASRVRVRPAPRYSaagSSLRVAAAGAAAGAAAGAAAGLAAGSGWRRATGPGEGGLEDDEDGAPGGNGTGRGVY 100

                          90       100       110
                  ....*....|....*....|....*....|...
gi 564331778  115 SYWAWTSGSGSVHSPRICLLLSGTLGALELLRP 147
Cdd:pfam14999 101 SYWAWTSGTGSTHHPPLCLLLGGALGALELLQP 133
 
Name Accession Description Interval E-value
Shadoo pfam14999
Shadow of prion protein, neuroprotective; This protein family is a Prion-like protein and its ...
 38-147 6.24e-40

Shadow of prion protein, neuroprotective; This protein family is a Prion-like protein and its function is neuroprotective and similar to PrP(C)-like. Shadoo is mainly expressed in the brain, and highly expressed in the hippocampus, the area of the brain which co-ordinates memory as well as spatial memory and navigation. This protein may also alter the biological actions of normal and abnormal Prion Protein (PrP) which lead to lethal neurodegenerative diseases. This family of proteins is found in eukaryotes. Proteins in this family are approximately 150 amino acids in length, of which the first 90 are alanine rich.


Pssm-ID: 373461  Cd Length: 133  Bit Score: 130.83  E-value: 6.24e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564331778   38 VRGGARGASRVRVRPAPRYS---SSLRVAAAGAAAGAAAGVAAGLATGSGWRRTSGPGELGLEDDENGAMGGNGTDRGVY 114
Cdd:pfam14999  21 LRGGARGASRVRVRPAPRYSaagSSLRVAAAGAAAGAAAGAAAGLAAGSGWRRATGPGEGGLEDDEDGAPGGNGTGRGVY 100

                          90       100       110
                  ....*....|....*....|....*....|...
gi 564331778  115 SYWAWTSGSGSVHSPRICLLLSGTLGALELLRP 147
Cdd:pfam14999 101 SYWAWTSGTGSTHHPPLCLLLGGALGALELLQP 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH