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Conserved domains on  [gi|564341339|ref|XP_006234414|]
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pyruvate dehydrogenase kinase, isozyme 1 isoform X1 [Rattus norvegicus]

Protein Classification

PDK/BCKDK family protein kinase( domain architecture ID 13768654)

PDK/BCKDK family protein kinase contains a histidine kinase-like ATPase domain and catalyzes the phosphorylation of protein substrates, such as branched-chain alpha-ketoacid dehydrogenase (BCKD) kinase that catalyzes the phosphorylation and inactivation of the BCKD complex, the key regulatory enzyme of the valine, leucine and isoleucine catabolic pathways

CATH:  3.30.565.10|1.20.140.20
EC:  2.7.11.-
Gene Ontology:  GO:0004672|GO:0005524|GO:0006468
PubMed:  10339418|10637609

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HATPase_PDK-like cd16929
Histidine kinase-like ATPase domain of pyruvate dehydrogenase kinase, branched-chain ...
 146-312 1.40e-76

Histidine kinase-like ATPase domain of pyruvate dehydrogenase kinase, branched-chain alpha-ketoacid dehydrogenase kinase and related domains; This family includes the histidine kinase-like ATPase (HATPase) domains of all four PDK isoforms (pyruvate dehydrogenase kinases 1-4) that have been described in mammals, and other PDKs including Saccharomyces Pkp1p and Pkp2p. PDKs and phosphatases tightly regulate the mitochondrial pyruvate dehydrogenase complex (PDC) by reversible phosphorylation. PDC catalyzes the oxidative decarboxylation of pyruvate to acetyl-CoA, connecting glycolysis and the TCA acid cycle. Also included in this family is mammalian branched-chain alpha-ketoacid dehydrogenase kinase (BDK), a mitochondrial protein kinase that phosphorylates a subunit of the branched-chain a-ketoacid dehydrogenase (BCKD) complex, which catalyzes the oxidative decarboxylation of branched-chain alpha-ketoacids derived from leucine, isoleucine, and valine, a rate-limiting step in the oxidative degradation of these branched-chain amino acids.


:

Pssm-ID: 340406 [Multi-domain]  Cd Length: 169  Bit Score: 233.00  E-value: 1.40e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 146 DVVEVIKDGYENARRLCDLYYINSPELELEelnaksPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHHADKG-VYPPIQ 224
Cdd:cd16929    1 SPKKVVEDASEEARVLCDDYYLSSPELEIE------GDPSIRFPYVPSHLYYILFELLKNAMRATVESHGDDSdDLPPIK 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 225 VHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRP-------RVETSRAVPLAGFGYGLPISRLYAQYFQGDLKL 297
Cdd:cd16929   75 VTVAKGDEDLTIKISDRGGGIPREDLARLFSYMYSTAPQPslddfsdLISGTQPSPLAGFGYGLPMSRLYAEYFGGDLDL 154

                        170
                 ....*....|....*
gi 564341339 298 YSLEGYGTDAVIYIK 312
Cdd:cd16929  155 QSMEGYGTDVYIYLK 169
BCDHK_Adom3 pfam10436
Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; Catabolism and synthesis of ...
 2-142 2.41e-57

Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. This is the butyryl-CoA dehydrogenase, subunit A domain 3, a largely alpha-helical bundle of the enzyme BCDHK. This enzyme is the regulator of the dehydrogenase complex that breaks branched-chain amino-acids down, by phosphorylating and thereby inactivating it when synthesis is required. The domain is associated with family HATPase_c pfam02518 which is towards the C-terminal.


:

Pssm-ID: 463093  Cd Length: 158  Bit Score: 183.47  E-value: 2.41e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339    2 FLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWYIQSLQELLDFKDKSAEDAKtiyEFTDTVIRIRNRHNDVIPTMA 81
Cdd:pfam10436  25 FLREELPVRLAHRIRELQNLPYILVSNPSISKVYEWYLQSFEELLSFPPPILEDNE---KFTELLEEILDRHNDVVPTLA 101

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564341339   82 QGVTEYKESfgvdpVTSQNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGSPSHRKH-IGSIN 142
Cdd:pfam10436 102 QGVLELKKY-----LSPEEIQSFLDRFLRSRIGIRLLAEQHIALTEQSNNPSHPPDyVGIID 158
 
Name Accession Description Interval E-value
HATPase_PDK-like cd16929
Histidine kinase-like ATPase domain of pyruvate dehydrogenase kinase, branched-chain ...
 146-312 1.40e-76

Histidine kinase-like ATPase domain of pyruvate dehydrogenase kinase, branched-chain alpha-ketoacid dehydrogenase kinase and related domains; This family includes the histidine kinase-like ATPase (HATPase) domains of all four PDK isoforms (pyruvate dehydrogenase kinases 1-4) that have been described in mammals, and other PDKs including Saccharomyces Pkp1p and Pkp2p. PDKs and phosphatases tightly regulate the mitochondrial pyruvate dehydrogenase complex (PDC) by reversible phosphorylation. PDC catalyzes the oxidative decarboxylation of pyruvate to acetyl-CoA, connecting glycolysis and the TCA acid cycle. Also included in this family is mammalian branched-chain alpha-ketoacid dehydrogenase kinase (BDK), a mitochondrial protein kinase that phosphorylates a subunit of the branched-chain a-ketoacid dehydrogenase (BCKD) complex, which catalyzes the oxidative decarboxylation of branched-chain alpha-ketoacids derived from leucine, isoleucine, and valine, a rate-limiting step in the oxidative degradation of these branched-chain amino acids.


Pssm-ID: 340406 [Multi-domain]  Cd Length: 169  Bit Score: 233.00  E-value: 1.40e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 146 DVVEVIKDGYENARRLCDLYYINSPELELEelnaksPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHHADKG-VYPPIQ 224
Cdd:cd16929    1 SPKKVVEDASEEARVLCDDYYLSSPELEIE------GDPSIRFPYVPSHLYYILFELLKNAMRATVESHGDDSdDLPPIK 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 225 VHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRP-------RVETSRAVPLAGFGYGLPISRLYAQYFQGDLKL 297
Cdd:cd16929   75 VTVAKGDEDLTIKISDRGGGIPREDLARLFSYMYSTAPQPslddfsdLISGTQPSPLAGFGYGLPMSRLYAEYFGGDLDL 154

                        170
                 ....*....|....*
gi 564341339 298 YSLEGYGTDAVIYIK 312
Cdd:cd16929  155 QSMEGYGTDVYIYLK 169
BCDHK_Adom3 pfam10436
Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; Catabolism and synthesis of ...
 2-142 2.41e-57

Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. This is the butyryl-CoA dehydrogenase, subunit A domain 3, a largely alpha-helical bundle of the enzyme BCDHK. This enzyme is the regulator of the dehydrogenase complex that breaks branched-chain amino-acids down, by phosphorylating and thereby inactivating it when synthesis is required. The domain is associated with family HATPase_c pfam02518 which is towards the C-terminal.


Pssm-ID: 463093  Cd Length: 158  Bit Score: 183.47  E-value: 2.41e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339    2 FLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWYIQSLQELLDFKDKSAEDAKtiyEFTDTVIRIRNRHNDVIPTMA 81
Cdd:pfam10436  25 FLREELPVRLAHRIRELQNLPYILVSNPSISKVYEWYLQSFEELLSFPPPILEDNE---KFTELLEEILDRHNDVVPTLA 101

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564341339   82 QGVTEYKESfgvdpVTSQNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGSPSHRKH-IGSIN 142
Cdd:pfam10436 102 QGVLELKKY-----LSPEEIQSFLDRFLRSRIGIRLLAEQHIALTEQSNNPSHPPDyVGIID 158
HATPase_c smart00387
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
 192-312 1.92e-20

Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.


Pssm-ID: 214643 [Multi-domain]  Cd Length: 111  Bit Score: 85.39  E-value: 1.92e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339   192 PSHLYHMVFELFKNAMRATMEHhadkgvyPPIQVHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVetsra 271
Cdd:smart00387   3 PDRLRQVLSNLLDNAIKYTPEG-------GRITVTLERDGDHVEITVEDNGPGIPPEDLEKIFEPFFRTDKRSRK----- 70

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 564341339   272 vpLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIK 312
Cdd:smart00387  71 --IGGTGLGLSIVKKLVELHGGEISVESEPGGGTTFTITLP 109
HATPase_c pfam02518
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ...
 191-312 5.68e-15

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.


Pssm-ID: 460579 [Multi-domain]  Cd Length: 109  Bit Score: 70.09  E-value: 5.68e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339  191 VPSHLYHMVFELFKNAMRATMEHhadkgvyPPIQVHVTlGEEDLTVKMSDRGGGVPLRKIDRLFNyMYSTAPRPRVEtsr 270
Cdd:pfam02518   2 DELRLRQVLSNLLDNALKHAAKA-------GEITVTLS-EGGELTLTVEDNGIGIPPEDLPRIFE-PFSTADKRGGG--- 69

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 564341339  271 avplaGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIK 312
Cdd:pfam02518  70 -----GTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLP 106
KdpD COG2205
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
139-311 9.10e-14

K+-sensing histidine kinase KdpD [Signal transduction mechanisms];


Pssm-ID: 441807 [Multi-domain]  Cd Length: 239  Bit Score: 69.94  E-value: 9.10e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 139 GSINPN---CDVVEVIKDGYENARRLCDLYYInspELELEelnakSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHha 215
Cdd:COG2205   82 GKLSLElepVDLAELLEEAVEELRPLAEEKGI---RLELD-----LPPELPLVYADPELLEQVLANLLDNAIKYSPPG-- 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 216 dkgvyPPIQVHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNYMYstaprpRVETSRAVPlaGFGYGLPISRLYAQYFQGDL 295
Cdd:COG2205  152 -----GTITISARREGDGVRISVSDNGPGIPEEELERIFERFY------RGDNSRGEG--GTGLGLAIVKRIVEAHGGTI 218

                        170
                 ....*....|....*.
gi 564341339 296 KLYSLEGYGTDAVIYI 311
Cdd:COG2205  219 WVESEPGGGTTFTVTL 234
PRK11091 PRK11091
aerobic respiration control sensor protein ArcB; Provisional
 185-313 7.15e-04

aerobic respiration control sensor protein ArcB; Provisional


Pssm-ID: 236842 [Multi-domain]  Cd Length: 779  Bit Score: 41.46  E-value: 7.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 185 PIQVVYVPSHLYHMVFELFKNAMRATmehhaDKGvyppiQVHVTL---GEEDLTVKMSDRGGGVPLRKIDRLFNyMYSTA 261
Cdd:PRK11091 389 PHKVITDGTRLRQILWNLISNAVKFT-----QQG-----GVTVRVryeEGDMLTFEVEDSGIGIPEDELDKIFA-MYYQV 457

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 564341339 262 PRpRVETSRAVplaGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKA 313
Cdd:PRK11091 458 KD-SHGGKPAT---GTGIGLAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHA 505
 
Name Accession Description Interval E-value
HATPase_PDK-like cd16929
Histidine kinase-like ATPase domain of pyruvate dehydrogenase kinase, branched-chain ...
 146-312 1.40e-76

Histidine kinase-like ATPase domain of pyruvate dehydrogenase kinase, branched-chain alpha-ketoacid dehydrogenase kinase and related domains; This family includes the histidine kinase-like ATPase (HATPase) domains of all four PDK isoforms (pyruvate dehydrogenase kinases 1-4) that have been described in mammals, and other PDKs including Saccharomyces Pkp1p and Pkp2p. PDKs and phosphatases tightly regulate the mitochondrial pyruvate dehydrogenase complex (PDC) by reversible phosphorylation. PDC catalyzes the oxidative decarboxylation of pyruvate to acetyl-CoA, connecting glycolysis and the TCA acid cycle. Also included in this family is mammalian branched-chain alpha-ketoacid dehydrogenase kinase (BDK), a mitochondrial protein kinase that phosphorylates a subunit of the branched-chain a-ketoacid dehydrogenase (BCKD) complex, which catalyzes the oxidative decarboxylation of branched-chain alpha-ketoacids derived from leucine, isoleucine, and valine, a rate-limiting step in the oxidative degradation of these branched-chain amino acids.


Pssm-ID: 340406 [Multi-domain]  Cd Length: 169  Bit Score: 233.00  E-value: 1.40e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 146 DVVEVIKDGYENARRLCDLYYINSPELELEelnaksPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHHADKG-VYPPIQ 224
Cdd:cd16929    1 SPKKVVEDASEEARVLCDDYYLSSPELEIE------GDPSIRFPYVPSHLYYILFELLKNAMRATVESHGDDSdDLPPIK 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 225 VHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRP-------RVETSRAVPLAGFGYGLPISRLYAQYFQGDLKL 297
Cdd:cd16929   75 VTVAKGDEDLTIKISDRGGGIPREDLARLFSYMYSTAPQPslddfsdLISGTQPSPLAGFGYGLPMSRLYAEYFGGDLDL 154

                        170
                 ....*....|....*
gi 564341339 298 YSLEGYGTDAVIYIK 312
Cdd:cd16929  155 QSMEGYGTDVYIYLK 169
BCDHK_Adom3 pfam10436
Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; Catabolism and synthesis of ...
 2-142 2.41e-57

Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. This is the butyryl-CoA dehydrogenase, subunit A domain 3, a largely alpha-helical bundle of the enzyme BCDHK. This enzyme is the regulator of the dehydrogenase complex that breaks branched-chain amino-acids down, by phosphorylating and thereby inactivating it when synthesis is required. The domain is associated with family HATPase_c pfam02518 which is towards the C-terminal.


Pssm-ID: 463093  Cd Length: 158  Bit Score: 183.47  E-value: 2.41e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339    2 FLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWYIQSLQELLDFKDKSAEDAKtiyEFTDTVIRIRNRHNDVIPTMA 81
Cdd:pfam10436  25 FLREELPVRLAHRIRELQNLPYILVSNPSISKVYEWYLQSFEELLSFPPPILEDNE---KFTELLEEILDRHNDVVPTLA 101

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564341339   82 QGVTEYKESfgvdpVTSQNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGSPSHRKH-IGSIN 142
Cdd:pfam10436 102 QGVLELKKY-----LSPEEIQSFLDRFLRSRIGIRLLAEQHIALTEQSNNPSHPPDyVGIID 158
HATPase_c smart00387
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
 192-312 1.92e-20

Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.


Pssm-ID: 214643 [Multi-domain]  Cd Length: 111  Bit Score: 85.39  E-value: 1.92e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339   192 PSHLYHMVFELFKNAMRATMEHhadkgvyPPIQVHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVetsra 271
Cdd:smart00387   3 PDRLRQVLSNLLDNAIKYTPEG-------GRITVTLERDGDHVEITVEDNGPGIPPEDLEKIFEPFFRTDKRSRK----- 70

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 564341339   272 vpLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIK 312
Cdd:smart00387  71 --IGGTGLGLSIVKKLVELHGGEISVESEPGGGTTFTITLP 109
HATPase_c pfam02518
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ...
 191-312 5.68e-15

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.


Pssm-ID: 460579 [Multi-domain]  Cd Length: 109  Bit Score: 70.09  E-value: 5.68e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339  191 VPSHLYHMVFELFKNAMRATMEHhadkgvyPPIQVHVTlGEEDLTVKMSDRGGGVPLRKIDRLFNyMYSTAPRPRVEtsr 270
Cdd:pfam02518   2 DELRLRQVLSNLLDNALKHAAKA-------GEITVTLS-EGGELTLTVEDNGIGIPPEDLPRIFE-PFSTADKRGGG--- 69

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 564341339  271 avplaGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIK 312
Cdd:pfam02518  70 -----GTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLP 106
KdpD COG2205
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
139-311 9.10e-14

K+-sensing histidine kinase KdpD [Signal transduction mechanisms];


Pssm-ID: 441807 [Multi-domain]  Cd Length: 239  Bit Score: 69.94  E-value: 9.10e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 139 GSINPN---CDVVEVIKDGYENARRLCDLYYInspELELEelnakSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHha 215
Cdd:COG2205   82 GKLSLElepVDLAELLEEAVEELRPLAEEKGI---RLELD-----LPPELPLVYADPELLEQVLANLLDNAIKYSPPG-- 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 216 dkgvyPPIQVHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNYMYstaprpRVETSRAVPlaGFGYGLPISRLYAQYFQGDL 295
Cdd:COG2205  152 -----GTITISARREGDGVRISVSDNGPGIPEEELERIFERFY------RGDNSRGEG--GTGLGLAIVKRIVEAHGGTI 218

                        170
                 ....*....|....*.
gi 564341339 296 KLYSLEGYGTDAVIYI 311
Cdd:COG2205  219 WVESEPGGGTTFTVTL 234
BaeS COG0642
Signal transduction histidine kinase [Signal transduction mechanisms];
176-311 1.77e-10

Signal transduction histidine kinase [Signal transduction mechanisms];


Pssm-ID: 440407 [Multi-domain]  Cd Length: 328  Bit Score: 61.46  E-value: 1.77e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 176 ELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATmehhaDKGVypPIQVHVTLGEEDLTVKMSDRGGGVPLRKIDRLFN 255
Cdd:COG0642  205 ELELDLPDDLPTVRGDPDRLRQVLLNLLSNAIKYT-----PEGG--TVTVSVRREGDRVRISVEDTGPGIPPEDLERIFE 277

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 564341339 256 YMYSTAPRPRVEtsravplaGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYI 311
Cdd:COG0642  278 PFFRTDPSRRGG--------GTGLGLAIVKRIVELHGGTIEVESEPGKGTTFTVTL 325
WalK COG5002
Sensor histidine kinase WalK [Signal transduction mechanisms];
145-305 5.19e-07

Sensor histidine kinase WalK [Signal transduction mechanisms];


Pssm-ID: 444026 [Multi-domain]  Cd Length: 390  Bit Score: 51.09  E-value: 5.19e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 145 CDVVEVIkdgyenaRRLCDLYYINSPELELEeLNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRatmehHADKGvyPPIQ 224
Cdd:COG5002  240 VDLAELL-------EEVVEELRPLAEEKGIE-LELDLPEDPLLVLGDPDRLEQVLTNLLDNAIK-----YTPEG--GTIT 304

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 225 VHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNYMYstaprpRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYG 304
Cdd:COG5002  305 VSLREEDDQVRISVRDTGIGIPEEDLPRIFERFY------RVDKSRSRETGGTGLGLAIVKHIVEAHGGRIWVESEPGKG 378


                 .
gi 564341339 305 T 305
Cdd:COG5002  379 T 379
HATPase_DpiB-CitA-like cd16915
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
 198-311 2.11e-06

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 DpiB, DcuS, and Bacillus subtilis CitS, DctS, and YufL; This family includes histidine kinase-like ATPase domains of Escherichia coli K-12 DpiB and DcuS, and Bacillus subtilis CitS, DctS and MalK histidine kinases (HKs) all of which are two component transduction systems (TCSs). E. coli K-12 DpiB (also known as CitA) is the histidine kinase (HK) of DpiA-DpiB, a two-component signal transduction system (TCS) required for the expression of citrate-specific fermentation genes and genes involved in plasmid inheritance. E. coli K-12 DcuS (also known as YjdH) is the HK of DcuS-DcuR, a TCS that in the presence of the extracellular C4-dicarboxlates, activates the expression of the genes of anaerobic fumarate respiration and of aerobic C4-dicarboxylate uptake. CitS is the HK of Bacillus subtilis CitS-CitT, a TCS which regulates expression of CitM, the Mg-citrate transporter. Bacillus subtilis DctS forms a tripartite sensor unit (DctS/DctA/DctB) for sensing C4 dicarboxylates. Bacillus subtilis MalK (also known as YfuL) is the HK of MalK-MalR (YufL-YufM) a TCS which regulates the expression of the malate transporters MaeN (YufR) and YflS, and is essential for utilization of malate in minimal medium. Proteins having this DpiB-CitA-like HATPase domain generally have sensor domains such as Cache and PAS, and a histidine kinase A (HisKA)-like SpoOB-type, alpha-helical domain.


Pssm-ID: 340392 [Multi-domain]  Cd Length: 104  Bit Score: 45.74  E-value: 2.11e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 198 MVFELFKNAMRATMEHHAdkgvyPPIQVHVTLGEE--DLTVKMSDRGGGVPLRKIDRLFNYMYST-APRPRvetsravpl 274
Cdd:cd16915    4 IVGNLIDNALDALAATGA-----PNKQVEVFLRDEgdDLVIEVRDTGPGIAPELRDKVFERGVSTkGQGER--------- 69

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 564341339 275 agfGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYI 311
Cdd:cd16915   70 ---GIGLALVRQSVERLGGSITVESEPGGGTTFSIRI 103
CitA COG3290
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction ...
 202-311 4.92e-06

Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction mechanisms];


Pssm-ID: 442519 [Multi-domain]  Cd Length: 389  Bit Score: 47.92  E-value: 4.92e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 202 LFKNAMRATMEHHADKgvyPPIQVHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNYMYSTaprpRVETSRavplagfGYGL 281
Cdd:COG3290  289 LLDNAIEAVEKLPEEE---RRVELSIRDDGDELVIEVEDSGPGIPEELLEKIFERGFST----KLGEGR-------GLGL 354

                         90       100       110
                 ....*....|....*....|....*....|
gi 564341339 282 PISRLYAQYFQGDLKLYSLEGYGTDAVIYI 311
Cdd:COG3290  355 ALVKQIVEKYGGTIEVESEEGEGTVFTVRL 384
NtrY COG5000
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ...
 202-311 6.81e-06

Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];


Pssm-ID: 444024 [Multi-domain]  Cd Length: 422  Bit Score: 47.65  E-value: 6.81e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 202 LFKNAMRAtMEHHadkgvyPPIQVHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRprvetsravplaGFGYGL 281
Cdd:COG5000  325 LLKNAIEA-IEEG------GEIEVSTRREDGRVRIEVSDNGPGIPEEVLERIFEPFFTTKPK------------GTGLGL 385

                         90       100       110
                 ....*....|....*....|....*....|
gi 564341339 282 PISRLYAQYFQGDLKLYSLEGYGTDAVIYI 311
Cdd:COG5000  386 AIVKKIVEEHGGTIELESRPGGGTTFTIRL 415
HATPase_BaeS-like cd16946
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
 192-295 5.45e-05

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli BasS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) similar to Escherichia coli BaeS HK of the BaeS/BaeR two-component regulatory system (TCS), which responds to envelope stress. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), and a HAMP sensory domain.


Pssm-ID: 340422 [Multi-domain]  Cd Length: 109  Bit Score: 42.06  E-value: 5.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 192 PSHLYHMVFELFKNAMRATmehhaDKGVyppiQVHVTLGEEDLTVKM--SDRGGGVPLRKIDRLFNYMYstaprpRVETS 269
Cdd:cd16946    2 RDRLQQLFVNLLENSLRYT-----DTGG----KLRIRAAQTPQEVRLdvEDSAPGVSDDQLARLFERFY------RVESS 66

                         90       100
                 ....*....|....*....|....*.
gi 564341339 270 RAVPLAGFGYGLPISRLYAQYFQGDL 295
Cdd:cd16946   67 RNRASGGSGLGLAICHNIALAHGGTI 92
HATPase_CreC-like cd16945
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
 223-297 6.36e-05

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli CreC; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Escherichia coli CreC of the CreC-CreB two-component regulatory system (TCS) involved in catabolic regulation. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), and accessory sensory domain(s) such as HAMP, CACHE or PAS.


Pssm-ID: 340421 [Multi-domain]  Cd Length: 106  Bit Score: 41.68  E-value: 6.36e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564341339 223 IQVHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNYMYSTaPRPRVETSRAvplagfGYGLPISRLYAQYFQGDLKL 297
Cdd:cd16945   26 IALQLEADTEGIELLVFDEGSGIPDYALNRVFERFYSL-PRPHSGQKST------GLGLAFVQEVAQLHGGRITL 93
HATPase_TmoS-FixL-DctS-like cd16920
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
 199-305 7.03e-05

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Rhizobium meliloti FixL, and Rhodobacter capsulatus DctS; includes hybrid sensor histidine kinase similar to Pseudomonas mendocina TmoS; This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs), such as Pseudomonas mendocina TmoS HK of the TmoS-TmoT TCS, which controls the expression of the toluene-4-monooxygenase pathway, Rhizobium meliloti FixL HK of the FixL-FixJ TCS, which regulates the expression of the genes related to nitrogen fixation in the root nodule in response to O(2) levels, and Rhodobacter capsulatus DctS of the DctS-DctR TCS, which controls synthesis of the high-affinity C4-dicarboxylate transport system. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA) and PAS sensor domain(s); many are hybrid sensor histidine kinases as they also contain a REC signal receiver domain.


Pssm-ID: 340397 [Multi-domain]  Cd Length: 104  Bit Score: 41.61  E-value: 7.03e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 199 VFELFKNAMRATMEHHADKGVyppIQVHVTLGEED-LTVKMSDRGGGVPLRKIDRLFNYMYSTAPrprvetsravplAGF 277
Cdd:cd16920    5 LINLVRNGIEAMSEGGCERRE---LTIRTSPADDRaVTISVKDTGPGIAEEVAGQLFDPFYTTKS------------EGL 69

                         90       100
                 ....*....|....*....|....*...
gi 564341339 278 GYGLPISRLYAQYFQGDLKLYSLEGYGT 305
Cdd:cd16920   70 GMGLSICRSIIEAHGGRLSVESPAGGGA 97
COG4191 COG4191
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal ...
 192-311 1.10e-04

Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms];


Pssm-ID: 443345 [Multi-domain]  Cd Length: 361  Bit Score: 43.63  E-value: 1.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 192 PSHLYHMVFELFKNAMRAtMEHHADkgvyPPIQVHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRvetsra 271
Cdd:COG4191  254 PGQLEQVLLNLLINAIDA-MEEGEG----GRITISTRREGDYVVISVRDNGPGIPPEVLERIFEPFFTTKPVGK------ 322

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 564341339 272 vplaGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYI 311
Cdd:COG4191  323 ----GTGLGLSISYGIVEKHGGRIEVESEPGGGTTFTITL 358
COG4192 COG4192
Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal ...
 202-299 1.73e-04

Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms];


Pssm-ID: 443346 [Multi-domain]  Cd Length: 640  Bit Score: 43.52  E-value: 1.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 202 LFKNAMRATMEHhadkgvyPPIQVHVTLGEEDLTVKMSDRGGGVPLrkIDRLFNYMYSTAPrprvetsravplAGFGYGL 281
Cdd:COG4192  551 LLVNALDAVATQ-------PQISVDLLSNAENLRVAISDNGNGWPL--VDKLFTPFTTTKE------------VGLGLGL 609

                         90
                 ....*....|....*...
gi 564341339 282 PISRLYAQYFQGDLKLYS 299
Cdd:COG4192  610 SICRSIMQQFGGDLYLAS 627
HATPase_BasS-like cd16940
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
 185-309 5.08e-04

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli BasS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) similar to Escherichia coli BasS HK of the BasS-BasR two-component regulatory system (TCS). Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some contain a HAMP sensory domain, while some an N-terminal two-component sensor kinase domain.


Pssm-ID: 340417 [Multi-domain]  Cd Length: 113  Bit Score: 39.31  E-value: 5.08e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 185 PIQVVYVPSHLYHMVFELFKNAMRatmehhadkgvYPP--IQVHVTLGEEDLTV-KMSDRGGGVPLRKIDRLFNYMYSTA 261
Cdd:cd16940    4 DIQVQGDALLLFLLLRNLVDNAVR-----------YSPqgSRVEIKLSADDGAViRVEDNGPGIDEEELEALFERFYRSD 72

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 564341339 262 PRprvetsravPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVI 309
Cdd:cd16940   73 GQ---------NYGGSGLGLSIVKRIVELHGGQIFLGNAQGGGLEAWV 111
PRK11091 PRK11091
aerobic respiration control sensor protein ArcB; Provisional
 185-313 7.15e-04

aerobic respiration control sensor protein ArcB; Provisional


Pssm-ID: 236842 [Multi-domain]  Cd Length: 779  Bit Score: 41.46  E-value: 7.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 185 PIQVVYVPSHLYHMVFELFKNAMRATmehhaDKGvyppiQVHVTL---GEEDLTVKMSDRGGGVPLRKIDRLFNyMYSTA 261
Cdd:PRK11091 389 PHKVITDGTRLRQILWNLISNAVKFT-----QQG-----GVTVRVryeEGDMLTFEVEDSGIGIPEDELDKIFA-MYYQV 457

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 564341339 262 PRpRVETSRAVplaGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKA 313
Cdd:PRK11091 458 KD-SHGGKPAT---GTGIGLAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHA 505
HATPase_RstB-like cd16939
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
 202-297 9.21e-04

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Salmonella typhimurium RstB; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Salmonella typhimurium RstB HK of the RstA-RstB two-component regulatory system (TCS), which regulates expression of the constituents participating in pyrimidine metabolism and iron acquisition, and may be required for regulation of Salmonella motility and invasion. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), and a HAMP sensor domain.


Pssm-ID: 340416 [Multi-domain]  Cd Length: 104  Bit Score: 38.18  E-value: 9.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 202 LFKNAMRatmehHADKGVyppiQVHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNymystaPRPRVETSRAVPLAGFGYGL 281
Cdd:cd16939    8 LLRNALR-----YAHRTV----RIALLVSGGRLTLIVEDDGPGIPAAARERVFE------PFVRLDPSRDRATGGFGLGL 72

                         90
                 ....*....|....*.
gi 564341339 282 PISRLYAQYFQGDLKL 297
Cdd:cd16939   73 AIVHRVALWHGGHVEC 88
HATPase_BvrS-ChvG-like cd16953
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
 221-285 1.06e-03

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Brucella abortus BvrS and Sinorhizobium meliloti ChvG; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Brucella abortus BvrS of the BvrR-BvrS two-component regulatory system (TCS), which controls cell invasion and intracellular survival, as well as Sinorhizobium meliloti and Agrobacterium tumefaciens ChvG of the ChvI-ChvG TCS necessary for endosymbiosis and pathogenicity in plants. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), an accessory HAMP sensor domain, a periplasmic stimulus-sensing domain, and some also have a sensor N-terminal transmembrane domain.


Pssm-ID: 340429 [Multi-domain]  Cd Length: 110  Bit Score: 38.32  E-value: 1.06e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564341339 221 PPIQVHVTL----GEEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAvplagfGYGLPISR 285
Cdd:cd16953   17 PPDTGRITVsampTGKMVTISVEDEGPGIPQEKLESIFDRFYTERPANEAFGQHS------GLGLSISR 79
HATPase_CckA-like cd16919
Histidine kinase-like ATPase domain of two-component sensor hybrid histidine kinases, similar ...
 234-311 1.82e-03

Histidine kinase-like ATPase domain of two-component sensor hybrid histidine kinases, similar to Brucella abortus 2308 CckA; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component hybrid sensor histidine kinase (HKs) similar to Brucella abortus 2308 CckA, which is a component of an essential protein phosphorelay that regulates expression of genes required for growth, division, and intracellular survival; phosphoryl transfer initiates from the sensor kinase CckA and proceeds via the ChpT phosphotransferase to two regulatory substrates: the DNA-binding response regulator CtrA and the phospho-receiver protein CpdR. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), a REC signal receiver domain, and some contain PAS or PAS and GAF sensor domain(s).


Pssm-ID: 340396 [Multi-domain]  Cd Length: 116  Bit Score: 37.74  E-value: 1.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 234 LTVKMSDRGGGVPLRKIDRLFNYMYSTAPrprvetsravplAGFGYGLPISRLYAQYFQ--GDLKLYSLEGYGTDAVIYI 311
Cdd:cd16919   48 VCLEVSDTGSGMPAEVLRRAFEPFFTTKE------------VGKGTGLGLSMVYGFVKQsgGHLRIYSEPGVGTTVRIYL 115
PRK11100 PRK11100
sensory histidine kinase CreC; Provisional
 223-309 2.01e-03

sensory histidine kinase CreC; Provisional


Pssm-ID: 236846 [Multi-domain]  Cd Length: 475  Bit Score: 39.83  E-value: 2.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 223 IQVHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNYMYSTaPRPrvETSRavplAGFGYGLPISRLYAQYFQGDLKLYSLEG 302
Cdd:PRK11100 390 ITLSAEVDGEQVALSVEDQGPGIPDYALPRIFERFYSL-PRP--ANGR----KSTGLGLAFVREVARLHGGEVTLRNRPE 462


                 ....*..
gi 564341339 303 YGTDAVI 309
Cdd:PRK11100 463 GGVLATL 469
HATPase_HupT_MifS-like cd16976
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
 199-304 4.45e-03

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Rhodobacter capsulatus HupT and Pseudomonas aeruginosa MifS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Rhodobacter capsulatus HupT of the HupT-HupR two-component regulatory system (TCS), which regulates the synthesis of HupSL, a membrane bound [NiFe]hydrogenase. It also contains the HATPase domain of Pseudomonas aeruginosa MifS, the HK of the MifS-MifR TCS, which may be involved in sensing alpha-ketoglutarate and regulating its transport and subsequent metabolism. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some also have a C-terminal PAS sensor domain.


Pssm-ID: 340435 [Multi-domain]  Cd Length: 102  Bit Score: 36.28  E-value: 4.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 199 VFELFKNAMRAtMEHHADkgvyPPIQVHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRvetsravplaGFG 278
Cdd:cd16976    5 LMNLLQNALDA-MGKVEN----PRIRIAARRLGGRLVLVVRDNGPGIAEEHLSRVFDPFFTTKPVGK----------GTG 69

                         90       100
                 ....*....|....*....|....*.
gi 564341339 279 YGLPISRLYAQYFQGDLKLYSLEGYG 304
Cdd:cd16976   70 LGLSISYGIVEEHGGRLSVANEEGAG 95
PRK15347 PRK15347
two component system sensor kinase;
223-305 4.80e-03

two component system sensor kinase;


Pssm-ID: 237951 [Multi-domain]  Cd Length: 921  Bit Score: 38.85  E-value: 4.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 223 IQVHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNYMYstaprpRVETSRAvplaGFGYGLPISRLYAQYFQGDLKLYSLEG 302
Cdd:PRK15347 534 IRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPFY------QADTHSQ----GTGLGLTIASSLAKMMGGELTLFSTPG 603


                 ...
gi 564341339 303 YGT 305
Cdd:PRK15347 604 VGS 606
HATPase_EnvZ-like cd16950
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
 223-311 5.55e-03

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli EnvZ and Pseudomonas aeruginosa BfmS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Escherichia coli EnvZ of the EnvZ-OmpR two-component regulatory system (TCS), which functions in osmoregulation. It also contains the HATPase domain of Pseudomonas aeruginosa BfmS, the HK of the BfmSR TCS, which functions in the regulation of the rhl quorum-sensing system and bacterial virulence in P. aeruginosa. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA) and a HAMP sensor domain; some also contain a periplasmic domain.


Pssm-ID: 340426 [Multi-domain]  Cd Length: 101  Bit Score: 35.89  E-value: 5.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 223 IQVHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNymystaPRPRVETSRAVplAGFGYGLPISRLYAQYFQGDLKLYSLEG 302
Cdd:cd16950   20 VEVSSDGEGNRTRIQVLDNGPGIAPEEVDELFQ------PFYRGDNARGT--SGTGLGLAIVQRISDAHGGSLTLANRAG 91


                 ....*....
gi 564341339 303 YGTDAVIYI 311
Cdd:cd16950   92 GGLCARIEL 100
PRK11360 PRK11360
two-component system sensor histidine kinase AtoS;
230-318 6.04e-03

two-component system sensor histidine kinase AtoS;


Pssm-ID: 236901 [Multi-domain]  Cd Length: 607  Bit Score: 38.41  E-value: 6.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 230 GEEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRprvetsravplaGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVI 309
Cdd:PRK11360 530 SDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKAK------------GTGLGLALSQRIINAHGGDIEVESEPGVGTTFTL 597


                 ....*....
gi 564341339 310 YIKALSTES 318
Cdd:PRK11360 598 YLPINPQGN 606
KinE COG5809
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome ...
 202-305 8.40e-03

Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 444511 [Multi-domain]  Cd Length: 489  Bit Score: 38.03  E-value: 8.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 202 LFKNAMRATmehhaDKGVYppIQVHVTLGEED-LTVKMSDRGGGVPLRKIDRLFNYMYSTAPRprvetsravplaGFGYG 280
Cdd:COG5809  387 LLKNAIEAM-----PEGGN--ITIETKAEDDDkVVISVTDEGCGIPEERLKKLGEPFYTTKEK------------GTGLG 447

                         90       100
                 ....*....|....*....|....*
gi 564341339 281 LPISRLYAQYFQGDLKLYSLEGYGT 305
Cdd:COG5809  448 LMVSYKIIEEHGGKITVESEVGKGT 472
RsbW COG2172
Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms];
201-288 9.21e-03

Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms];


Pssm-ID: 441775 [Multi-domain]  Cd Length: 127  Bit Score: 36.04  E-value: 9.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564341339 201 ELFKNAMRatmehHADKGVYP-PIQVHVTLGEEDLTVKMSDRGGGVPLRKIDRLFNymystaprprvetsravPLAGFGY 279
Cdd:COG2172   41 EAVTNAVR-----HAYGGDPDgPVEVELELDPDGLEIEVRDEGPGFDPEDLPDPYS-----------------TLAEGGR 98


                 ....*....
gi 564341339 280 GLPISRLYA 288
Cdd:COG2172   99 GLFLIRRLM 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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