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Conserved domains on  [gi|564344397|ref|XP_006235647|]
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mitochondrial import receptor subunit TOM34 isoform X1 [Rattus norvegicus]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 1003384)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
3a0801s09 super family cl36792
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 12-294 3.98e-22

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


The actual alignment was detected with superfamily member TIGR00990:

Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 96.59  E-value: 3.98e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397   12 LRAAGNQSFRNGQYAEASALYERALRLlqargsadpEEESVLYSNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLRR 91
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC---------KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397   92 ASAYEALEKYSLAYVDYkTVLQI-----DNSVASALEgiNRITRALMDSLGPEWRLKLPPIPVVP--------VSAQKRW 158
Cdd:TIGR00990 201 ANAYDGLGKYADALLDL-TASCIidgfrNEQSAQAVE--RLLKKFAESKAKEILETKPENLPSVTfvgnylqsFRPKPRP 277

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397  159 SSLPSENH--KETAKS------KSKETTATKNRVPSAGDVERARVLKEEGNELVK-----------KGNHKKAIEKYSES 219
Cdd:TIGR00990 278 AGLEDSNEldEETGNGqlqlglKSPESKADESYEEAARAFEKALDLGKLGEKEAIalnlrgtfkclKGKHLEALADLSKS 357

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564344397  220 LLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLADISSLLQIEPRN 294
Cdd:TIGR00990 358 IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432
 
Name Accession Description Interval E-value
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 12-294 3.98e-22

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 96.59  E-value: 3.98e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397   12 LRAAGNQSFRNGQYAEASALYERALRLlqargsadpEEESVLYSNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLRR 91
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC---------KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397   92 ASAYEALEKYSLAYVDYkTVLQI-----DNSVASALEgiNRITRALMDSLGPEWRLKLPPIPVVP--------VSAQKRW 158
Cdd:TIGR00990 201 ANAYDGLGKYADALLDL-TASCIidgfrNEQSAQAVE--RLLKKFAESKAKEILETKPENLPSVTfvgnylqsFRPKPRP 277

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397  159 SSLPSENH--KETAKS------KSKETTATKNRVPSAGDVERARVLKEEGNELVK-----------KGNHKKAIEKYSES 219
Cdd:TIGR00990 278 AGLEDSNEldEETGNGqlqlglKSPESKADESYEEAARAFEKALDLGKLGEKEAIalnlrgtfkclKGKHLEALADLSKS 357

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564344397  220 LLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLADISSLLQIEPRN 294
Cdd:TIGR00990 358 IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
189-298 1.70e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.80  E-value: 1.70e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397 189 DVERARVLKEEGNELVKKGNHKKAIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRA 268
Cdd:COG0457    4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                         90       100       110
                 ....*....|....*....|....*....|
gi 564344397 269 QAYKALKDYKSSLADISSLLQIEPRNGPAH 298
Cdd:COG0457   84 LALQALGRYEEALEDYDKALELDPDDAEAL 113
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 11-175 4.38e-06

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 47.47  E-value: 4.38e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397  11 ELRAAGNQSFRNGQYAEASALYERALRLlqarGSADPEeesvLYSNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLR 90
Cdd:PLN03088   4 DLEDKAKEAFVDDDFALAVDLYTQAIDL----DPNNAE----LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397  91 RASAYEALEKYSLAyvdyKTVLQIDNSVASaleGINRITRAL--MDSLGPEwRLKLPPIPVVPVSAQKRWSSLPSENHKE 168
Cdd:PLN03088  76 KGTACMKLEEYQTA----KAALEKGASLAP---GDSRFTKLIkeCDEKIAE-EEKDLVQPVPSDLPSSVTAPPVEEADAT 147


                 ....*..
gi 564344397 169 TAKSKSK 175
Cdd:PLN03088 148 PVVPPSK 154
TPR_1 pfam00515
Tetratricopeptide repeat;
229-260 1.03e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.94  E-value: 1.03e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 564344397  229 TYSNRALCHLVLKQYKEAEKDCTEALKLDGKN 260
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 229-260 1.51e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.20  E-value: 1.51e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 564344397   229 TYSNRALCHLVLKQYKEAEKDCTEALKLDGKN 260
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 12-294 3.98e-22

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 96.59  E-value: 3.98e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397   12 LRAAGNQSFRNGQYAEASALYERALRLlqargsadpEEESVLYSNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLRR 91
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC---------KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397   92 ASAYEALEKYSLAYVDYkTVLQI-----DNSVASALEgiNRITRALMDSLGPEWRLKLPPIPVVP--------VSAQKRW 158
Cdd:TIGR00990 201 ANAYDGLGKYADALLDL-TASCIidgfrNEQSAQAVE--RLLKKFAESKAKEILETKPENLPSVTfvgnylqsFRPKPRP 277

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397  159 SSLPSENH--KETAKS------KSKETTATKNRVPSAGDVERARVLKEEGNELVK-----------KGNHKKAIEKYSES 219
Cdd:TIGR00990 278 AGLEDSNEldEETGNGqlqlglKSPESKADESYEEAARAFEKALDLGKLGEKEAIalnlrgtfkclKGKHLEALADLSKS 357

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564344397  220 LLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLADISSLLQIEPRN 294
Cdd:TIGR00990 358 IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 153-287 1.85e-13

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 70.78  E-value: 1.85e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397  153 SAQKRWSSLPSENHKETAKSKSKETTATKNRVPSAGDVERARVLKEEGNELVKKGNHKKAIEKYSESLLFSSlESATYSN 232
Cdd:TIGR00990  87 KTEEKKSTAPKNAPVEPADELPEIDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSN 165

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 564344397  233 RALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLADISSL 287
Cdd:TIGR00990 166 RAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTAS 220
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
189-298 1.70e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.80  E-value: 1.70e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397 189 DVERARVLKEEGNELVKKGNHKKAIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRA 268
Cdd:COG0457    4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                         90       100       110
                 ....*....|....*....|....*....|
gi 564344397 269 QAYKALKDYKSSLADISSLLQIEPRNGPAH 298
Cdd:COG0457   84 LALQALGRYEEALEDYDKALELDPDDAEAL 113
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
193-308 7.04e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 64.26  E-value: 7.04e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397 193 ARVLKEEGNELVKKGNHKKAIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQAYK 272
Cdd:COG0457   42 AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALL 121

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 564344397 273 ALKDYKSSLADISSLLQIEPRNGPAHKLRQEVNQNM 308
Cdd:COG0457  122 ELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
191-292 1.00e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 63.40  E-value: 1.00e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397 191 ERARVLKEEGNELVKKGNHKKAIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQA 270
Cdd:COG4785   71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIA 150

                         90       100
                 ....*....|....*....|..
gi 564344397 271 YKALKDYKSSLADISSLLQIEP 292
Cdd:COG4785  151 LYYLGRYELAIADLEKALELDP 172
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
54-302 3.30e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 59.25  E-value: 3.30e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397  54 YSNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLRRASAYEALEKYSLAYVDYKTVLQIDNSVASALEGInritralm 133
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL-------- 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397 134 dslgpewrlklppipvvpvsaqkrwsslpsenhketakskskettatknrvpsagdverarvlkeeGNELVKKGNHKKAI 213
Cdd:COG0457   83 ------------------------------------------------------------------GLALQALGRYEEAL 96

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397 214 EKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLADISSLLQIEPR 293
Cdd:COG0457   97 EDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALA 176


                 ....*....
gi 564344397 294 NGPAHKLRQ 302
Cdd:COG0457  177 ALLAAALGE 185
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 191-298 7.66e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 59.62  E-value: 7.66e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397 191 ERARVLKEEGNELVKKGNHKKAIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQA 270
Cdd:COG3914   76 LLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEA 155

                         90       100
                 ....*....|....*....|....*...
gi 564344397 271 YKALKDYKSSLADISSLLQIEPRNGPAH 298
Cdd:COG3914  156 LRRLGRLEEAIAALRRALELDPDNAEAL 183
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 200-298 2.55e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.08  E-value: 2.55e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397 200 GNELVKKGNHKKAIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQAYKALKDYKS 279
Cdd:COG3914  119 GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198

                         90
                 ....*....|....*....
gi 564344397 280 SLADISSLLQIEPRNGPAH 298
Cdd:COG3914  199 AIAAYRRALELDPDNADAH 217
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 200-306 3.39e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.24  E-value: 3.39e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397 200 GNELVKKGNHKKAIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQAYKALKDYKS 279
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103

                         90       100
                 ....*....|....*....|....*..
gi 564344397 280 SLADISSLLQIEPRNGPAHKLRQEVNQ 306
Cdd:COG4235  104 AIAAWQKLLALLPADAPARLLEASIAE 130
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
229-301 3.39e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 56.08  E-value: 3.39e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564344397 229 TYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLADISSLLQIEPRNGPAHKLR 301
Cdd:COG4785   75 LYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
7-125 3.79e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.17  E-value: 3.79e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397   7 DSVEELRAAGNQSFRNGQYAEASALYERALRLlqargsaDPEEESVLYsNRAACYLKDGNCTDCIKDCTSALALVPFSIK 86
Cdd:COG0457    6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL-------DPDDAEALY-NLGLAYLRLGRYEEALADYEQALELDPDDAE 77

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 564344397  87 PLLRRASAYEALEKYSLAYVDYKTVLQIDNSVASALEGI 125
Cdd:COG0457   78 ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNL 116
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
2-117 1.26e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 54.54  E-value: 1.26e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397   2 APKLSDSVEELRAAGNQSFRNGQYAEASALYERALRLlqargsaDPEEeSVLYSNRAACYLKDGNCTDCIKDCTSALALV 81
Cdd:COG4785   66 ALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALEL-------DPDL-AEAYNNRGLAYLLLGDYDAALEDFDRALELD 137

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 564344397  82 PFSIKPLLRRASAYEALEKYSLAYVDYKTVLQIDNS 117
Cdd:COG4785  138 PDYAYAYLNRGIALYYLGRYELAIADLEKALELDPN 173
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 191-309 3.49e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.73  E-value: 3.49e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397 191 ERARVLKEEGNELVKKGNHKKAIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQA 270
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 564344397 271 YKALKDYKSSLADISSLLQIEPRNGPAHKLRQEVNQNMN 309
Cdd:COG4783   82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 14-294 4.11e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.58  E-value: 4.11e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397  14 AAGNQSFRNGQYAEASALYERALRLlqargsaDPEEESVLYsNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLRRAS 93
Cdd:COG2956   13 FKGLNYLLNGQPDKAIDLLEEALEL-------DPETVEAHL-ALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQ 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397  94 AYEALEKYSLAYVDYKTVLQIDNSVASALEGINRITRAlmdslgpewrlklppipvvpvsaQKRWsslpsenhketaksk 173
Cdd:COG2956   85 DYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQ-----------------------EGDW--------------- 126

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397 174 sKETTATKNRVPSAGDvERARVLKEEGNELVKKGNHKKAIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEA 253
Cdd:COG2956  127 -EKAIEVLERLLKLGP-ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERA 204

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 564344397 254 LKLDGKNVKAFYRRAQAYKALKDYKSSLADISSLLQIEPRN 294
Cdd:COG2956  205 LEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD 245
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 200-294 7.65e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.58  E-value: 7.65e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397 200 GNELVKKGNHKKAIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQAYKALKDYKS 279
Cdd:COG4783   45 GEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124

                         90
                 ....*....|....*
gi 564344397 280 SLADISSLLQIEPRN 294
Cdd:COG4783  125 AIAALEKALELDPDD 139
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
203-293 8.12e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 49.40  E-value: 8.12e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397 203 LVKKGNHKKAIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKdCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLA 282
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                         90
                 ....*....|.
gi 564344397 283 DISSLLQIEPR 293
Cdd:COG3063   81 YLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 187-292 8.83e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.73  E-value: 8.83e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397 187 AGDVERARVLKEEGNELVKKGNHKKAIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYR 266
Cdd:COG5010   48 DKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSN 127

                         90       100
                 ....*....|....*....|....*.
gi 564344397 267 RAQAYKALKDYKSSLADISSLLQIEP 292
Cdd:COG5010  128 LAALLLSLGQDDEAKAALQRALGTSP 153
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 186-309 1.19e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.04  E-value: 1.19e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397 186 SAGDVERA-----RVLKEEGNE----------LVKKGNHKKAIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDC 250
Cdd:COG2956   88 KAGLLDRAeelleKLLELDPDDaealrllaeiYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 564344397 251 TEALKLDGKNVKAFYRRAQAYKALKDYKSSLADISSLLQIEPRNGPAHKLRQEVNQNMN 309
Cdd:COG2956  168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
7-134 1.43e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.55  E-value: 1.43e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397   7 DSVEELRAAGNQSFRNGQYAEASALYERALRLlqargsaDPEEESVLYsNRAACYLKDGNCTDCIKDCTSALALVPFSIK 86
Cdd:COG0457   40 DDAEALYNLGLAYLRLGRYEEALADYEQALEL-------DPDDAEALN-NLGLALQALGRYEEALEDYDKALELDPDDAE 111

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 564344397  87 PLLRRASAYEALEKYSLAYVDYKTVLQIDNSVASALEGINRITRALMD 134
Cdd:COG0457  112 ALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 5-132 3.93e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 51.15  E-value: 3.93e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397   5 LSDSVEELRAAGNQSFRNGQYAEASALYERALRLlqargsaDPEEESVLYsNRAACYLKDGNCTDCIKDCTSALALVPFS 84
Cdd:COG3914   74 LLLLAALLELAALLLQALGRYEEALALYRRALAL-------NPDNAEALF-NLGNLLLALGRLEEALAALRRALALNPDF 145

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 564344397  85 IKPLLRRASAYEALEKYSLAYVDYKTVLQID-------NSVASALEGINRITRAL 132
Cdd:COG3914  146 AEAYLNLGEALRRLGRLEEAIAALRRALELDpdnaealNNLGNALQDLGRLEEAI 200
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 189-304 5.21e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.11  E-value: 5.21e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397 189 DVERARVLKEEGNELVKKGNHKKAIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRA 268
Cdd:COG2956   72 DPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELA 151

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 564344397 269 QAYKALKDYKSSLADISSLLQIEPRNGPAHKLRQEV 304
Cdd:COG2956  152 ELYLEQGDYDEAIEALEKALKLDPDCARALLLLAEL 187
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 11-175 4.38e-06

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 47.47  E-value: 4.38e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397  11 ELRAAGNQSFRNGQYAEASALYERALRLlqarGSADPEeesvLYSNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLR 90
Cdd:PLN03088   4 DLEDKAKEAFVDDDFALAVDLYTQAIDL----DPNNAE----LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397  91 RASAYEALEKYSLAyvdyKTVLQIDNSVASaleGINRITRAL--MDSLGPEwRLKLPPIPVVPVSAQKRWSSLPSENHKE 168
Cdd:PLN03088  76 KGTACMKLEEYQTA----KAALEKGASLAP---GDSRFTKLIkeCDEKIAE-EEKDLVQPVPSDLPSSVTAPPVEEADAT 147


                 ....*..
gi 564344397 169 TAKSKSK 175
Cdd:PLN03088 148 PVVPPSK 154
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 7-131 5.41e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.00  E-value: 5.41e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397   7 DSVEELRAAGNQSFRNGQYAEASALYERALRLlqargsaDPEEESVLYsNRAACYLKDGNCTDCIKDCTSALALVPFSIK 86
Cdd:COG4235   15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRL-------DPDNADALL-DLAEALLAAGDTEEAEELLERALALDPDNPE 86

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 564344397  87 PLLRRASAYEALEKYSLAYVDYKTVLQIDNSVASALEGINRITRA 131
Cdd:COG4235   87 ALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 189-298 1.05e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.26  E-value: 1.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397 189 DVERARVLKEEGNELVKKGNHKKAIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRA 268
Cdd:COG2956   38 DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLA 117

                         90       100       110
                 ....*....|....*....|....*....|
gi 564344397 269 QAYKALKDYKSSLADISSLLQIEPRNGPAH 298
Cdd:COG2956  118 EIYEQEGDWEKAIEVLERLLKLGPENAHAY 147
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 7-115 2.51e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 45.75  E-value: 2.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397   7 DSVEELRAAGNQSFRNGQYAEASALYERALRLlqargsaDPEEESVlYSNRAACYLKDGNCTDCIKDCTSALALVPFSIK 86
Cdd:COG3914  110 DNAEALFNLGNLLLALGRLEEALAALRRALAL-------NPDFAEA-YLNLGEALRRLGRLEEAIAALRRALELDPDNAE 181

                         90       100
                 ....*....|....*....|....*....
gi 564344397  87 PLLRRASAYEALEKYSLAYVDYKTVLQID 115
Cdd:COG3914  182 ALNNLGNALQDLGRLEEAIAAYRRALELD 210
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 198-300 3.90e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 44.33  E-value: 3.90e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397 198 EEGNELVKKGNHKKAIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQAYKALKDY 277
Cdd:COG2956   13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92

                         90       100
                 ....*....|....*....|...
gi 564344397 278 KSSLADISSLLQIEPRNGPAHKL 300
Cdd:COG2956   93 DRAEELLEKLLELDPDDAEALRL 115
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 6-132 8.47e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.72  E-value: 8.47e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397   6 SDSVEELRAAGNQSFRNGQYAEASALYERALRLlqargsaDPEEESVLYsNRAACYLKDGNCTDCIKDCTSALALVPFSI 85
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALEL-------DPDNPEAFA-LLGEILLQLGDLDEAIVLLHEALELDPDEP 72

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 564344397  86 KPLLRRASAYEALEKYSLAYVDYKTVLQIDNSVASALEGINRITRAL 132
Cdd:COG4783   73 EARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL 119
TPR_1 pfam00515
Tetratricopeptide repeat;
229-260 1.03e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.94  E-value: 1.03e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 564344397  229 TYSNRALCHLVLKQYKEAEKDCTEALKLDGKN 260
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
COG3899 COG3899
Predicted ATPase [General function prediction only];
9-80 1.04e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 44.08  E-value: 1.04e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564344397    9 VEELRAAGNQSFRNGQYAEASALYERALRLLQARgsADPEEESVLYSNRAACYLKDGNCTDCIKDCTSALAL 80
Cdd:COG3899   705 ARLLLRAARRALARGAYAEALRYLERALELLPPD--PEEEYRLALLLELAEALYLAGRFEEAEALLERALAA 774
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 7-115 1.07e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.72  E-value: 1.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397   7 DSVEELRAAGNQSFRNGQYAEASALYERALRLlqargsaDPEEESVLYsNRAACYLKDGNCTDCIKDCTSALALVPFSIK 86
Cdd:COG4783   36 DNPEAFALLGEILLQLGDLDEAIVLLHEALEL-------DPDEPEARL-NLGLALLKAGDYDEALALLEKALKLDPEHPE 107

                         90       100
                 ....*....|....*....|....*....
gi 564344397  87 PLLRRASAYEALEKYSLAYVDYKTVLQID 115
Cdd:COG4783  108 AYLRLARAYRALGRPDEAIAALEKALELD 136
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 229-260 1.51e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.20  E-value: 1.51e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 564344397   229 TYSNRALCHLVLKQYKEAEKDCTEALKLDGKN 260
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 7-132 2.00e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.41  E-value: 2.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397   7 DSVEELRAAGNQSFRNGQYAEASALYERALRLLQargsadpeEESVLYSNRAACYLKDGNCTDCIKDCTSALALVPFSIK 86
Cdd:COG2956  108 DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGP--------ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCAR 179

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 564344397  87 PLLRRASAYEALEKYSLAYVDYKTVLQIDNSVASALEGINRITRAL 132
Cdd:COG2956  180 ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKL 225
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
23-144 2.12e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.92  E-value: 2.12e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397  23 GQYAEASALYERALRLlqargsaDPEEESVLYsNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLRRASAYEALEKYS 102
Cdd:COG0457   90 GRYEEALEDYDKALEL-------DPDDAEALY-NLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 564344397 103 LAYVDYKTVLQIDNSVASALEGINRITRALMDSLGPEWRLKL 144
Cdd:COG0457  162 EALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 20-115 2.29e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.10  E-value: 2.29e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397  20 FRNGQYAEASALYERALRLlqargsaDPEEESVLYsNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLRRASAYEALE 99
Cdd:COG5010   65 NKLGDFEESLALLEQALQL-------DPNNPELYY-NLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG 136

                         90
                 ....*....|....*.
gi 564344397 100 KYSLAYVDYKTVLQID 115
Cdd:COG5010  137 QDDEAKAALQRALGTS 152
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
4-113 2.52e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 41.79  E-value: 2.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397   4 KLSDSVEELRAAGNQSFRNGQYAEASALYERALRLLQArgsadpEEESVLYSnRAACYLKDGNCTDCIKDCTSALALVP- 82
Cdd:COG4700   84 EFADTVQNRVRLADALLELGRYDEAIELYEEALTGIFA------DDPHILLG-LAQALFELGRYAEALETLEKLIAKNPd 156

                         90       100       110
                 ....*....|....*....|....*....|...
gi 564344397  83 --FSIKPLLrRASAYEALEKYSLAYVDYKTVLQ 113
Cdd:COG4700  157 fkSSDAHLL-YARALEALGDLEAAEAELEALAR 188
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
20-117 3.76e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.00  E-value: 3.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397  20 FRNGQYAEASALYERALRLlqargsaDPEEESVLYsNRAACYLKDGNCTDCIKdCTSALALVPFSIKPLLRRASAYEALE 99
Cdd:COG3063    3 LKLGDLEEAEEYYEKALEL-------DPDNADALN-NLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELG 73

                         90
                 ....*....|....*...
gi 564344397 100 KYSLAYVDYKTVLQIDNS 117
Cdd:COG3063   74 DYDEALAYLERALELDPS 91
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
191-261 6.69e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 40.28  E-value: 6.69e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564344397 191 ERARVLKEEGNELVKKGNHKKAIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNV 261
Cdd:COG4785  105 DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 88-298 7.85e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.22  E-value: 7.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397   88 LLRRASAYEALEKYSLAYVDYKTVLQIDNSVASALEGINRITRALMDSLGPE------WRLKLPPIPVVPVSAqKRWSSL 161
Cdd:TIGR02917  25 LIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEkelrkaLSLGYPKNQVLPLLA-RAYLLQ 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397  162 psenhketakSKSKETTATKNRVPSAGDVERARVLKEEGNELVKKGNHKKAIEKYSESLLFSslESATYSNRALCHLVL- 240
Cdd:TIGR02917 104 ----------GKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID--PRSLYAKLGLAQLALa 171

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 564344397  241 -KQYKEAEKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLADISSLLQIEPRNGPAH 298
Cdd:TIGR02917 172 eNRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVL 230
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 16-122 8.11e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.48  E-value: 8.11e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397  16 GNQSFRNGQYAEASALYERALRllqargsADPEEESVLYsNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLRRASAY 95
Cdd:COG2956  151 AELYLEQGDYDEAIEALEKALK-------LDPDCARALL-LLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELY 222

                         90       100
                 ....*....|....*....|....*..
gi 564344397  96 EALEKYSLAYVDYKTVLQIDNSVASAL 122
Cdd:COG2956  223 EKLGDPEEALELLRKALELDPSDDLLL 249
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 27-298 1.11e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.45  E-value: 1.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397   27 EASALYERALRLLQARGSAdpeeesvlysnraacYLKDGNCTDCIKDCTSALALVPFSIKPLLRRASAYEALEKYSLAYV 106
Cdd:TIGR02917 592 EAADAAPDSPEAWLMLGRA---------------QLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT 656

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397  107 DYKTVLQIDNSVASALEGINRItralmdslgpewrlklppipvvpvsaqkrwssLPSENHKETAKSKSKETTATKnrvps 186
Cdd:TIGR02917 657 SLKRALELKPDNTEAQIGLAQL--------------------------------LLAAKRTESAKKIAKSLQKQH----- 699

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397  187 agdVERARVLKEEGNELVKKGNHKKAIEKYSESLLFSSLeSATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYR 266
Cdd:TIGR02917 700 ---PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTA 775

                         250       260       270
                  ....*....|....*....|....*....|..
gi 564344397  267 RAQAYKALKDYKSSLADISSLLQIEPRNGPAH 298
Cdd:TIGR02917 776 LAELYLAQKDYDKAIKHYQTVVKKAPDNAVVL 807
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 187-298 1.21e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.79  E-value: 1.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397 187 AGDVERARVLKEEGNELVKKGNHKKAIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYR 266
Cdd:COG5010   14 LLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYN 93

                         90       100       110
                 ....*....|....*....|....*....|..
gi 564344397 267 RAQAYKALKDYKSSLADISSLLQIEPRNGPAH 298
Cdd:COG5010   94 LALLYSRSGDKDEAKEYYEKALALSPDNPNAY 125
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 212-293 1.39e-03

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 39.77  E-value: 1.39e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397 212 AIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQAYKALKDY---KSSLADISSLL 288
Cdd:PLN03088  21 AVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYqtaKAALEKGASLA 100


                 ....*
gi 564344397 289 QIEPR 293
Cdd:PLN03088 101 PGDSR 105
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
236-298 1.81e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.07  E-value: 1.81e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564344397 236 CHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLAdISSLLQIEPRNGPAH 298
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEAL 62
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
19-115 1.82e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.13  E-value: 1.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397  19 SFRNGQYAEASALYERALRLLQARGSADPEEESVLYSNRAACYLKDGNCTDCIKDCTSALALVPFSIKPLLRRASAYEAL 98
Cdd:COG4785   41 LADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLL 120

                         90
                 ....*....|....*..
gi 564344397  99 EKYSLAYVDYKTVLQID 115
Cdd:COG4785  121 GDYDAALEDFDRALELD 137
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 203-301 2.93e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.30  E-value: 2.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397  203 LVKKGNHKKAIEKYSE-SLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSL 281
Cdd:TIGR02917 100 YLLQGKFQQVLDELPGkTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEAR 179

                          90       100
                  ....*....|....*....|
gi 564344397  282 ADISSLLQIEPRNGPAHKLR 301
Cdd:TIGR02917 180 ALIDEVLTADPGNVDALLLK 199
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 202-306 4.42e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 36.51  E-value: 4.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564344397 202 ELVKKGNHKKAIEKYSESL-LF--SSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVK---AFYRRAQAYKALK 275
Cdd:COG1729    2 ALLKAGDYDEAIAAFKAFLkRYpnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELG 81

                         90       100       110
                 ....*....|....*....|....*....|.
gi 564344397 276 DYKSSLADISSLLQIEPRNGPAHKLRQEVNQ 306
Cdd:COG1729   82 DYDKARATLEELIKKYPDSEAAKEARARLAR 112
TPR_12 pfam13424
Tetratricopeptide repeat;
20-66 8.32e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 34.67  E-value: 8.32e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 564344397   20 FRNGQYAEASALYERALRLLQARGSADPEEESVLYSNRAACYLKDGN 66
Cdd:pfam13424  14 RRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGR 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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