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Conserved domains on  [gi|564349810|ref|XP_006237748|]
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coiled-coil domain-containing protein 91 isoform X4 [Rattus norvegicus]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000037)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 145-384 8.39e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 57.64  E-value: 8.39e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 145 LKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHA 224
Cdd:COG1196  234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 225 QHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVH 304
Cdd:COG1196  314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 305 AEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRLDQVTRQR 384
Cdd:COG1196  394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 145-384 8.39e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 57.64  E-value: 8.39e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 145 LKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHA 224
Cdd:COG1196  234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 225 QHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVH 304
Cdd:COG1196  314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 305 AEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRLDQVTRQR 384
Cdd:COG1196  394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 100-412 1.52e-08

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 56.67  E-value: 1.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  100 VSNSQLRQKISSLET-KLKASEEEK----QRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQaRYREL----QEKHKQEL 170
Cdd:pfam17380 284 VSERQQQEKFEKMEQeRLRQEKEEKarevERRRKLEEAEKARQAEMDRQAAIYAEQERMAME-RERELerirQEERKREL 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  171 EDMRKaghEALSIIVDEYKALLQ---------SSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQH---------QRLLEV 232
Cdd:pfam17380 363 ERIRQ---EEIAMEISRMRELERlqmerqqknERVRQELEAARKVKILEEERQRKIQQQKVEMEQiraeqeearQREVRR 439

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  233 LDTEKELLKEKIQEAlTQQSQEQKETLGKclQEEMQKNKetlesavKLEKEAMKDVITKAVEEERENLEKVHAEEREMWK 312
Cdd:pfam17380 440 LEEERAREMERVRLE-EQERQQQVERLRQ--QEEERKRK-------KLELEKEKRDRKRAEEQRRKILEKELEERKQAMI 509

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  313 TEhardqERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAvKRTRDELVEYVREQRRLDQVTRQRSLSSLELF 392
Cdd:pfam17380 510 EE-----ERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER-RRIQEQMRKATEERSRLEAMEREREMMRQIVE 583

                         330       340
                  ....*....|....*....|
gi 564349810  393 LSCAQKQLSAliATEPVDIE 412
Cdd:pfam17380 584 SEKARAEYEA--TTPITTIK 601
PTZ00121 PTZ00121
MAEBL; Provisional
 113-383 1.91e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 50.52  E-value: 1.91e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  113 ETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYKA-- 190
Cdd:PTZ00121 1435 EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAde 1514

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  191 LLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKEllKEKIQEAltQQSQEQKETLGKCLQEEMQKN 270
Cdd:PTZ00121 1515 AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE--KKKAEEA--KKAEEDKNMALRKAEEAKKAE 1590

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  271 KETLESAVKL--EKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQE----RVAEAIQAAvQEQQRMSQEAVKAA 344
Cdd:PTZ00121 1591 EARIEEVMKLyeEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEaeekKKAEELKKA-EEENKIKAAEEAKK 1669

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 564349810  345 IAEEQRRSEKAM--EEAVKRTRDELVEYVREQRRLDQVTRQ 383
Cdd:PTZ00121 1670 AEEDKKKAEEAKkaEEDEKKAAEALKKEAEEAKKAEELKKK 1710
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 103-361 1.00e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.66  E-value: 1.00e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810   103 SQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKD--FLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEa 180
Cdd:TIGR02168  263 QELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQkqILRERLANLERQLEELEAQLEELESKLDELAEELAE- 341

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810   181 lsiiVDEYKALLQSSVKQQLDAIEKQyvSAIEKQAHRCEELLHAQHQRLlevldtEKELLKEKIQEALTQQSQEQKETLG 260
Cdd:TIGR02168  342 ----LEEKLEELKEELESLEAELEEL--EAELEELESRLEELEEQLETL------RSKVAQLELQIASLNNEIERLEARL 409

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810   261 KCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMwKTEHARDQERVAEAIQAAVQEQQRMSQEA 340
Cdd:TIGR02168  410 ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL-EEALEELREELEEAEQALDAAERELAQLQ 488

                          250       260
                   ....*....|....*....|.
gi 564349810   341 VKAAIAEEQRRSEKAMEEAVK 361
Cdd:TIGR02168  489 ARLDSLERLQENLEGFSEGVK 509
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 145-384 8.39e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 57.64  E-value: 8.39e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 145 LKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHA 224
Cdd:COG1196  234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 225 QHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVH 304
Cdd:COG1196  314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 305 AEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRLDQVTRQR 384
Cdd:COG1196  394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 100-412 1.52e-08

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 56.67  E-value: 1.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  100 VSNSQLRQKISSLET-KLKASEEEK----QRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQaRYREL----QEKHKQEL 170
Cdd:pfam17380 284 VSERQQQEKFEKMEQeRLRQEKEEKarevERRRKLEEAEKARQAEMDRQAAIYAEQERMAME-RERELerirQEERKREL 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  171 EDMRKaghEALSIIVDEYKALLQ---------SSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQH---------QRLLEV 232
Cdd:pfam17380 363 ERIRQ---EEIAMEISRMRELERlqmerqqknERVRQELEAARKVKILEEERQRKIQQQKVEMEQiraeqeearQREVRR 439

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  233 LDTEKELLKEKIQEAlTQQSQEQKETLGKclQEEMQKNKetlesavKLEKEAMKDVITKAVEEERENLEKVHAEEREMWK 312
Cdd:pfam17380 440 LEEERAREMERVRLE-EQERQQQVERLRQ--QEEERKRK-------KLELEKEKRDRKRAEEQRRKILEKELEERKQAMI 509

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  313 TEhardqERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAvKRTRDELVEYVREQRRLDQVTRQRSLSSLELF 392
Cdd:pfam17380 510 EE-----ERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER-RRIQEQMRKATEERSRLEAMEREREMMRQIVE 583

                         330       340
                  ....*....|....*....|
gi 564349810  393 LSCAQKQLSAliATEPVDIE 412
Cdd:pfam17380 584 SEKARAEYEA--TTPITTIK 601
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 104-379 5.07e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 55.33  E-value: 5.07e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 104 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSI 183
Cdd:COG1196  243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELE-LEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL 321

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 184 IVDEYKALLQ-SSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRL-----LEVLDTEKELLKEKIQEALTQQSQEQKE 257
Cdd:COG1196  322 EEELAELEEElEELEEELEELEEELEEAEEELEEAEAELAEAEEALLeaeaeLAEAEEELEELAEELLEALRAAAELAAQ 401

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 258 TLGkcLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEkvhAEEREMWKTEHARDQERVAEAIQAAVQEQQRMS 337
Cdd:COG1196  402 LEE--LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA---LEEAAEEEAELEEEEEALLELLAELLEEAALLE 476

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 564349810 338 QEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRLDQ 379
Cdd:COG1196  477 AALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 146-407 1.16e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 50.71  E-value: 1.16e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 146 KEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEykALLQSSVKQQLDAIEKQYVSAIEKQAHrcEELLHAQ 225
Cdd:COG1196  221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAEL--AELEAELEELRLELEELELELEEAQAE--EYELLAE 296

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 226 HQRLLEVLDTEKELLKEkIQEALTQQSQEQKETLGKCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHA 305
Cdd:COG1196  297 LARLEQDIARLEERRRE-LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 306 EEREMWKtEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRLDQVTRQRS 385
Cdd:COG1196  376 EAEEELE-ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454

                        250       260
                 ....*....|....*....|..
gi 564349810 386 LSSLELFLSCAQKQLSALIATE 407
Cdd:COG1196  455 EEEEEALLELLAELLEEAALLE 476
PTZ00121 PTZ00121
MAEBL; Provisional
 113-383 1.91e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 50.52  E-value: 1.91e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  113 ETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYKA-- 190
Cdd:PTZ00121 1435 EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAde 1514

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  191 LLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKEllKEKIQEAltQQSQEQKETLGKCLQEEMQKN 270
Cdd:PTZ00121 1515 AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE--KKKAEEA--KKAEEDKNMALRKAEEAKKAE 1590

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  271 KETLESAVKL--EKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQE----RVAEAIQAAvQEQQRMSQEAVKAA 344
Cdd:PTZ00121 1591 EARIEEVMKLyeEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEaeekKKAEELKKA-EEENKIKAAEEAKK 1669

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 564349810  345 IAEEQRRSEKAM--EEAVKRTRDELVEYVREQRRLDQVTRQ 383
Cdd:PTZ00121 1670 AEEDKKKAEEAKkaEEDEKKAAEALKKEAEEAKKAEELKKK 1710
PTZ00121 PTZ00121
MAEBL; Provisional
 115-384 8.73e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 48.21  E-value: 8.73e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  115 KLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQAryrelqEKHKQELEDMRKAghEALSIIVDEYKALLQS 194
Cdd:PTZ00121 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA------EEDKKKADELKKA--AAAKKKADEAKKKAEE 1429

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  195 SVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETL 274
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK 1509

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  275 ESAVKLEK--EAMKDVITKAVEEERENLEKVHAEEREmwKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAI--AEEQR 350
Cdd:PTZ00121 1510 KKADEAKKaeEAKKADEAKKAEEAKKADEAKKAEEKK--KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALrkAEEAK 1587

                         250       260       270
                  ....*....|....*....|....*....|....
gi 564349810  351 RSEKAMEEAVKRTRDELVEYVREQRRLDQVTRQR 384
Cdd:PTZ00121 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK 1621
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 103-362 2.53e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 46.47  E-value: 2.53e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 103 SQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALS 182
Cdd:COG1196  298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE-LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 183 IIVDEYKALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKE---------KIQEALTQQSQ 253
Cdd:COG1196  377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEeeeeeealeEAAEEEAELEE 456

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 254 EQKETlgkcLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARD-QERVAEAIQAAVQE 332
Cdd:COG1196  457 EEEAL----LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAgLRGLAGAVAVLIGV 532

                        250       260       270
                 ....*....|....*....|....*....|
gi 564349810 333 QQRMSQEAVKAAIAEEQRRSEKAMEEAVKR 362
Cdd:COG1196  533 EAAYEAALEAALAAALQNIVVEDDEVAAAA 562
PTZ00121 PTZ00121
MAEBL; Provisional
 113-362 3.08e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 46.29  E-value: 3.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  113 ETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQdaVSFQARYRELQEKHKQElEDMRKAGHEAlsiivDEYKALL 192
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEE--LKKAEEKKKAEEAKKAE-EDKNMALRKA-----EEAKKAE 1590

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  193 QSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKE 272
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  273 TLEsavKLEKEAMKdvitKAVEEERENLEKVHAEEREMWKTEHARDQE----RVAEAIQAAVQEQQRMSQEAVKAAIAEE 348
Cdd:PTZ00121 1671 EED---KKKAEEAK----KAEEDEKKAAEALKKEAEEAKKAEELKKKEaeekKKAEELKKAEEENKIKAEEAKKEAEEDK 1743

                         250
                  ....*....|....
gi 564349810  349 QRRSEKAMEEAVKR 362
Cdd:PTZ00121 1744 KKAEEAKKDEEEKK 1757
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 103-344 8.04e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 44.37  E-value: 8.04e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 103 SQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALS 182
Cdd:COG4942   30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR-IRALEQELAALEAELAELEKEIAELRAELEAQKEELAE 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 183 IIVDEYKALLQSSVKQQLDAiekQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELlkEKIQEALTQQSQEQKEtlgkc 262
Cdd:COG4942  109 LLRALYRLGRQPPLALLLSP---EDFLDAVRRLQYLKYLAPARREQAEELRADLAEL--AALRAELEAERAELEA----- 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 263 LQEEMQKNKETLESAVKlEKEAMKDVITKAVEEERENLEKVHAEEREMwktehardQERVAEAIQAAVQEQQRMSQEAVK 342
Cdd:COG4942  179 LLAELEEERAALEALKA-ERQKLLARLEKELAELAAELAELQQEAEEL--------EALIARLEAEAAAAAERTPAAGFA 249


                 ..
gi 564349810 343 AA 344
Cdd:COG4942  250 AL 251
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 103-361 1.00e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.66  E-value: 1.00e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810   103 SQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKD--FLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEa 180
Cdd:TIGR02168  263 QELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQkqILRERLANLERQLEELEAQLEELESKLDELAEELAE- 341

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810   181 lsiiVDEYKALLQSSVKQQLDAIEKQyvSAIEKQAHRCEELLHAQHQRLlevldtEKELLKEKIQEALTQQSQEQKETLG 260
Cdd:TIGR02168  342 ----LEEKLEELKEELESLEAELEEL--EAELEELESRLEELEEQLETL------RSKVAQLELQIASLNNEIERLEARL 409

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810   261 KCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMwKTEHARDQERVAEAIQAAVQEQQRMSQEA 340
Cdd:TIGR02168  410 ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL-EEALEELREELEEAEQALDAAERELAQLQ 488

                          250       260
                   ....*....|....*....|.
gi 564349810   341 VKAAIAEEQRRSEKAMEEAVK 361
Cdd:TIGR02168  489 ARLDSLERLQENLEGFSEGVK 509
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 104-377 1.11e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.66  E-value: 1.11e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810   104 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLK-----EKEQDAVSFQARYRELQEKHKQELEDMRKAGH 178
Cdd:TIGR02168  695 ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARleaevEQLEERIAQLSKELTELEAEIEELEERLEEAE 774

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810   179 EALSIIVDEyKALLQSSVKQQLDAIE--KQYVSAIEKQAHRCEELLHAQHQRLlEVLDTEKELLKEKIQEaLTQQSQEQK 256
Cdd:TIGR02168  775 EELAEAEAE-IEELEAQIEQLKEELKalREALDELRAELTLLNEEAANLRERL-ESLERRIAATERRLED-LEEQIEELS 851

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810   257 ETLGKC--LQEEMQKNKETLESAVKLEKEAmKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVA--EAIQAAVQE 332
Cdd:TIGR02168  852 EDIESLaaEIEELEELIEELESELEALLNE-RASLEEALALLRSELEELSEELRELESKRSELRRELEElrEKLAQLELR 930

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*..
gi 564349810   333 QQRMSQEA--VKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRL 377
Cdd:TIGR02168  931 LEGLEVRIdnLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRL 977
PTZ00121 PTZ00121
MAEBL; Provisional
 117-362 1.79e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.98  E-value: 1.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  117 KASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYKallqssv 196
Cdd:PTZ00121 1541 KAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK------- 1613

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  197 KQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLES 276
Cdd:PTZ00121 1614 KAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  277 AVKLEKEAMK-DVITKAVEEERENLEKVH-AEEREMWKTEHARDQE----RVAEAIQAAVQEQQRMSQEAVKAAIAEEQR 350
Cdd:PTZ00121 1694 LKKEAEEAKKaEELKKKEAEEKKKAEELKkAEEENKIKAEEAKKEAeedkKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773

                         250
                  ....*....|....
gi 564349810  351 RSEK--AMEEAVKR 362
Cdd:PTZ00121 1774 RKEKeaVIEEELDE 1787
PTZ00121 PTZ00121
MAEBL; Provisional
 113-379 2.21e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.59  E-value: 2.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  113 ETKLKASEEEK--QRIKKDVESLMEK-HSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYK 189
Cdd:PTZ00121 1312 EEAKKADEAKKkaEEAKKKADAAKKKaEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  190 ALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLH-AQHQRLLEVLDTEKEllKEKIQEALTQQSQEQKEtlGKCLQEEMQ 268
Cdd:PTZ00121 1392 KADEAKKKAEEDKKKADELKKAAAAKKKADEAKKkAEEKKKADEAKKKAE--EAKKADEAKKKAEEAKK--AEEAKKKAE 1467

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  269 KNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKaaiAEE 348
Cdd:PTZ00121 1468 EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK---AEE 1544

                         250       260       270
                  ....*....|....*....|....*....|.
gi 564349810  349 QRRSEKaMEEAVKRTRDELVEYVREQRRLDQ 379
Cdd:PTZ00121 1545 KKKADE-LKKAEELKKAEEKKKAEEAKKAEE 1574
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 104-342 3.45e-04

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 42.90  E-value: 3.45e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810   104 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAV---SFQARYRELQEKHKQELEDMRK--AGH 178
Cdd:pfam12128  298 QWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEqlpSWQSELENLEERLKALTGKHQDvtAKY 377

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810   179 EALSIIVDEYKALLQSSVKQQLDAIEKqyvsAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEkiqealtqqsqEQKET 258
Cdd:pfam12128  378 NRRRSKIKEQNNRDIAGIKDKLAKIRE----ARDRQLAVAEDDLQALESELREQLEAGKLEFNE-----------EEYRL 442

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810   259 LGKCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQ 338
Cdd:pfam12128  443 KSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSAL 522


                   ....
gi 564349810   339 EAVK 342
Cdd:pfam12128  523 DELE 526
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 103-349 4.48e-04

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 42.12  E-value: 4.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 103 SQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQEKHKQELEDMRKagheals 182
Cdd:COG3883   19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAE-LEALQAEIDKLQAEIAEAEAEIEERREELGE------- 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 183 IIVDEYKALLQSSVKQQL-------DAIEKqyVSAIEKqahrceelLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQ 255
Cdd:COG3883   91 RARALYRSGGSVSYLDVLlgsesfsDFLDR--LSALSK--------IADADADLLEELKADKAELEAKKAELEAKLAELE 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 256 KetlgkcLQEEMQKNKETLESAVKlEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQR 335
Cdd:COG3883  161 A------LKAELEAAKAELEAQQA-EQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233

                        250
                 ....*....|....
gi 564349810 336 MSQEAVKAAIAEEQ 349
Cdd:COG3883  234 AAAAAAAAAAASAA 247
PTZ00121 PTZ00121
MAEBL; Provisional
 113-376 5.71e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.44  E-value: 5.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  113 ETKLKASEEEK-QRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQE----LEDMRKAGHEALSIIVDE 187
Cdd:PTZ00121 1474 EAKKKAEEAKKaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEeakkADEAKKAEEKKKADELKK 1553

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  188 YKALLQSSVKQQLDAIEKQYVSAiEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEAltqqsqeQKETLGKCLQEEM 267
Cdd:PTZ00121 1554 AEELKKAEEKKKAEEAKKAEEDK-NMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA-------KKAEEAKIKAEEL 1625

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  268 QKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHA------EEREMWKTEHAR--DQERVAEAIQAAVQEQQRMSQE 339
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAaeeakkAEEDKKKAEEAKkaEEDEKKAAEALKKEAEEAKKAE 1705

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 564349810  340 AVKAAIAEEQRRSE--KAMEEAVKRTRDELVEYVREQRR 376
Cdd:PTZ00121 1706 ELKKKEAEEKKKAEelKKAEEENKIKAEEAKKEAEEDKK 1744
PTZ00121 PTZ00121
MAEBL; Provisional
 97-407 1.36e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.28  E-value: 1.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810   97 GVHVSNSQLRQKISSLEtKLKASEEEKQRIKKdvESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKA 176
Cdd:PTZ00121 1054 GNHEGKAEAKAHVGQDE-GLKPSYKDFDFDAK--EDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKA 1130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  177 GHEALSIIVDEYKALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLK----EKIQEALTQQS 252
Cdd:PTZ00121 1131 EEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKaedaRKAEAARKAEE 1210

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  253 QEQKETLGKCLQEEMQKNKETLESAVKLEKEAmkdvitKAVEEERENLEKVHAEEREMW---------KTEHARDQERVA 323
Cdd:PTZ00121 1211 ERKAEEARKAEDAKKAEAVKKAEEAKKDAEEA------KKAEEERNNEEIRKFEEARMAhfarrqaaiKAEEARKADELK 1284

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  324 EAIQAAVQEQQRMSQEAVKA----AIAEEQRRSEKAMEEA--VKRTRDELVEYVREQRRLDQVTRQRSLSSLELFLSCAQ 397
Cdd:PTZ00121 1285 KAEEKKKADEAKKAEEKKKAdeakKKAEEAKKADEAKKKAeeAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364

                         330
                  ....*....|
gi 564349810  398 KQLSALIATE 407
Cdd:PTZ00121 1365 KAEAAEKKKE 1374
PTZ00121 PTZ00121
MAEBL; Provisional
 164-383 1.51e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 40.89  E-value: 1.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  164 EKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQLDAIEKQyvsaiekQAHRCEELLHAQHQRLLEVLDTEKEL---- 239
Cdd:PTZ00121 1233 EEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE-------EARKADELKKAEEKKKADEAKKAEEKkkad 1305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  240 -LKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLE---SAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEH 315
Cdd:PTZ00121 1306 eAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKkaaEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564349810  316 ARDQERVAEAIQAAVQEQQRMSQEAVKAAiaEEQRRSEKAMEEA-VKRTRDELVEYVREQRRLDQVTRQ 383
Cdd:PTZ00121 1386 KAEEKKKADEAKKKAEEDKKKADELKKAA--AAKKKADEAKKKAeEKKKADEAKKKAEEAKKADEAKKK 1452
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 184-359 1.67e-03

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 40.17  E-value: 1.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 184 IVDEYKALlQSSVKQQLDAiEKQYVSAIEKQAHRCEELLHAQHQRLLEVldtEKELLKEkiQEALTQQSQEQKETLGKCL 263
Cdd:PRK09510  60 VVEQYNRQ-QQQQKSAKRA-EEQRKKKEQQQAEELQQKQAAEQERLKQL---EKERLAA--QEQKKQAEEAAKQAALKQK 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810 264 QEEMQKNKETLESAVKLEKEAMK-DVITKAVEEERENLE----KVHAEEREMWKTEHARDQERVAEAIQAAVQE-QQRMS 337
Cdd:PRK09510 133 QAEEAAAKAAAAAKAKAEAEAKRaAAAAKKAAAEAKKKAeaeaAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEaKKKAA 212

                        170       180
                 ....*....|....*....|..
gi 564349810 338 QEAVKAAIAEEQRRSEKAMEEA 359
Cdd:PRK09510 213 AEAKKKAAAEAKAAAAKAAAEA 234
mukB PRK04863
chromosome partition protein MukB;
59-277 1.72e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 40.71  E-value: 1.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810   59 VQLQQSAHTHLNIPLfplgltdeSNHGALALEDEPEgpgvhVSNSQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHS 138
Cdd:PRK04863  809 VQKLQRLHQAFSRFI--------GSHLAVAFEADPE-----AELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLS 875

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  139 VLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRK-AGHEALSIIVDEYKALLQSSvKQQLDAIEKQYVSAIEKQA-- 215
Cdd:PRK04863  876 ALNRLLPRLNLLADETLADRVEEIREQLDEAEEAKRFvQQHGNALAQLEPIVSVLQSD-PEQFEQLKQDYQQAQQTQRda 954

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564349810  216 -----------HRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSqEQKETLgKCLQEEMQKNKETLESA 277
Cdd:PRK04863  955 kqqafaltevvQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERT-RAREQL-RQAQAQLAQYNQVLASL 1025
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 101-306 2.75e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 40.00  E-value: 2.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  101 SNSQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDflkekeqdavsfQARYRELQEKHKQELEDMRKAGHeA 180
Cdd:TIGR04523 385 EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE------------IERLKETIIKNNSEIKDLTNQDS-V 451

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  181 LSIIVDEYKAlLQSSVKQQLDAIEKQYVSAIEKQAHRCEELlhAQHQRLLEVLDTEKELLKEKIQEaLTQQSQEQKETLG 260
Cdd:TIGR04523 452 KELIIKNLDN-TRESLETQLKVLSRSINKIKQNLEQKQKEL--KSKEKELKKLNEEKKELEEKVKD-LTKKISSLKEKIE 527

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 564349810  261 KCLQEEMQKNKETLESAVKLEK---EAMKDVITKAVEEERENLEKVHAE 306
Cdd:TIGR04523 528 KLESEKKEKESKISDLEDELNKddfELKKENLEKEIDEKNKEIEELKQT 576
PTZ00121 PTZ00121
MAEBL; Provisional
 113-399 4.78e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 39.35  E-value: 4.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  113 ETKLKASEEEKQRIK-KDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKAghEALSIIVDEYKAL 191
Cdd:PTZ00121 1395 EAKKKAEEDKKKADElKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA--EEAKKKAEEAKKA 1472

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  192 LQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLlEVLDTEKELLKEKIQEALTQQSQEQKETLGKClqEEMQKNK 271
Cdd:PTZ00121 1473 DEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK-KADEAKKAEEAKKADEAKKAEEAKKADEAKKA--EEKKKAD 1549

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  272 ETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREmwKTEHARDQErvaeaIQAAVQEQQRMSQEAVKAAIAEEQRR 351
Cdd:PTZ00121 1550 ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK--KAEEARIEE-----VMKLYEEEKKMKAEEAKKAEEAKIKA 1622

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 564349810  352 SEKAMEEAVKRTRDELVEYVREQRRLDQVTRQRSLSSLELFLSCAQKQ 399
Cdd:PTZ00121 1623 EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
106-277 8.05e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 38.74  E-value: 8.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  106 RQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEK--------DFLKEKEQDAVSFQARYRELQekhkQELEDMRKAG 177
Cdd:COG4913   609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQErrealqrlAEYSWDEIDVASAEREIAELE----AELERLDASS 684

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349810  178 HE--ALSIIVDEYKALLQSSVKQQLDAIEKQyvSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQ 255
Cdd:COG4913   685 DDlaALEEQLEELEAELEELEEELDELKGEI--GRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDA 762

                         170       180
                  ....*....|....*....|...
gi 564349810  256 KE-TLGKCLQEEMQKNKETLESA 277
Cdd:COG4913   763 VErELRENLEERIDALRARLNRA 785
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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