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Conserved domains on  [gi|564353550|ref|XP_006239234|]
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F-actin-capping protein subunit beta isoform X2 [Rattus norvegicus]

Protein Classification

F-actin-capping protein subunit beta( domain architecture ID 10471470)

F-actin-capping protein subunit beta, with subunit alpha, binds in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
F_actin_cap_B pfam01115
F-actin capping protein, beta subunit;
65-293 4.09e-165

F-actin capping protein, beta subunit;


:

Pssm-ID: 460070  Cd Length: 230  Bit Score: 458.94  E-value: 4.09e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353550   65 DLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGAMPS 144
Cdd:pfam01115   1 DLLRRLPPKKIEENLNNLITLCPDLADDLLSSVDQPLKIKQDKETGKEYLLCDYNRDGDSYRSPWSNKYDPPLEDGPVPS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353550  145 ARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLD-HGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKL 223
Cdd:pfam01115  81 DRLRKLEIKANDAFDVYRDLYYEGGISSVYLWDLDdGGFAGVVLIKKEGDGSNESSGSWDSIHVFEVTETDSSGTATYKL 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353550  224 TSTVMLWLQTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDI 293
Cdd:pfam01115 161 TSTVILSLKTNDEATGALTLSGSLTRQTEKTLPVNDLDSHIANIGRLIEDMENKMRNLLQEVYFGKTKDI 230
 
Name Accession Description Interval E-value
F_actin_cap_B pfam01115
F-actin capping protein, beta subunit;
65-293 4.09e-165

F-actin capping protein, beta subunit;


Pssm-ID: 460070  Cd Length: 230  Bit Score: 458.94  E-value: 4.09e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353550   65 DLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGAMPS 144
Cdd:pfam01115   1 DLLRRLPPKKIEENLNNLITLCPDLADDLLSSVDQPLKIKQDKETGKEYLLCDYNRDGDSYRSPWSNKYDPPLEDGPVPS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353550  145 ARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLD-HGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKL 223
Cdd:pfam01115  81 DRLRKLEIKANDAFDVYRDLYYEGGISSVYLWDLDdGGFAGVVLIKKEGDGSNESSGSWDSIHVFEVTETDSSGTATYKL 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353550  224 TSTVMLWLQTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDI 293
Cdd:pfam01115 161 TSTVILSLKTNDEATGALTLSGSLTRQTEKTLPVNDLDSHIANIGRLIEDMENKMRNLLQEVYFGKTKDI 230
 
Name Accession Description Interval E-value
F_actin_cap_B pfam01115
F-actin capping protein, beta subunit;
65-293 4.09e-165

F-actin capping protein, beta subunit;


Pssm-ID: 460070  Cd Length: 230  Bit Score: 458.94  E-value: 4.09e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353550   65 DLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGAMPS 144
Cdd:pfam01115   1 DLLRRLPPKKIEENLNNLITLCPDLADDLLSSVDQPLKIKQDKETGKEYLLCDYNRDGDSYRSPWSNKYDPPLEDGPVPS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353550  145 ARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLD-HGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKL 223
Cdd:pfam01115  81 DRLRKLEIKANDAFDVYRDLYYEGGISSVYLWDLDdGGFAGVVLIKKEGDGSNESSGSWDSIHVFEVTETDSSGTATYKL 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353550  224 TSTVMLWLQTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDI 293
Cdd:pfam01115 161 TSTVILSLKTNDEATGALTLSGSLTRQTEKTLPVNDLDSHIANIGRLIEDMENKMRNLLQEVYFGKTKDI 230
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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