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Conserved domains on  [gi|564355049|ref|XP_006239833|]
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photoreceptor cilium actin regulator isoform X1 [Rattus norvegicus]

Protein Classification

Retinal domain-containing protein( domain architecture ID 12173672)

Retinal domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Retinal pfam15449
Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. ...
 1-1247 0e+00

Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. Mutations of the gene encoding this protein have been associated with retinal disorders such as retinitis pigmentosa and late-onset progressive retinal atrophy. The function of this family of proteins is unknown, but it is likely to be important in the development and function of the retina.


:

Pssm-ID: 464722 [Multi-domain]  Cd Length: 1293  Bit Score: 1872.92  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049     1 MGCTPSHNVIVNSVAKSGIQFFKRPKAILPGCQWGSQKCPIPLLIQSSTFCDPGGELHPGARLAEETASSRKLPDMTEGL 80
Cdd:pfam15449    1 MGCTPSHSDIVNSVAKSGIQFLKKPKAILPGCQGGSERGSIPLLVKSSTCYDSGEGLSQGQRPAEEQPSSRWNQTMAEGL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049    81 CQL----------------PESQT--FHMNKSQSRMATDISFRTEGSHRTQEVEFSGKEGKENTPRETSERGREPKCHPS 142
Cdd:pfam15449   81 CQLtgdptsgkrkdmegliPETKTspSQLNKSQSHMAKDIPFKTQSSHRSQGAAFSGEESEESNTQETSKWGRKPKCHRS 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   143 DSQDHCCQTV---PEPKGKVDFPESLVKAHQHAYAYLHTSLSRYEAIVHLVQQASQTWELLQSMLSFLLLGFEEASQLLG 219
Cdd:pfam15449  161 GKQGHCCQTIlpaHESEGKVDFPEPLVKAHQHAYAYLHSSLSKYEAILHIAHQATQTQELLQPMVSFLLLCFDEVNQLLG 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   220 EISKDGEVLLREVRGDLAWPVRKGEPWEHPDLLQQLLQYTVNKLQVVHSTVAALTGSFLEGSSSYLRATAGHLEGKLSTK 299
Cdd:pfam15449  241 EISKDGEVLLQEVREDLAWPLKKGEPQEQPDLLQQLLQYTVSKLQVLHGTVASLTSSFLEGSSSYLHSTASHLENKLSTK 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   300 RGIDECLLRALGQLESLTSGSSDPGLLGPPLCSEDSGIGADNESVHSVEKLGKQASWDFAAELGEWKPGTAAQGEARPSG 379
Cdd:pfam15449  321 RGVDERLLRALGQLESLASGHGDPGVQDLPLCSEDSGIGADNESVHSVDKLGKQASWDLVPEPAEWKPGISPQVEARLSG 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   380 HAWQKGPYWTGPDRPQDCPLSGPRIAKVQPAVQDEARSSNTSSTSPEAVTSRPPEAAKSIPWDSLGTEIPVQTQLSRrSS 459
Cdd:pfam15449  401 HAWQQGPFWMGSDRPQDCPLSRPPTAKVQPAAQGEAGSPCPSSTGPENTTSRPLELGKSSPCDSLGTGIPVEAHLSK-GS 479

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   460 GLMGSPYLS-GDEDSSPEEEDELGSTDLHPEPQKALPSRPQSSPDPRESLFQPYSTKLRSPQAQEMILKMKEAISERIKF 538
Cdd:pfam15449  480 RLMDTPSLSeDEDSSPEEEEDEVSSTSLCTWQEKALPSRPQSSPAGTESPFQPHPRRLRSPQAQEMILKMKEAISERIKF 559

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   539 VPVPSRPQDWAEEEEGRSVVPPRPRSVSGCRRAPERQRRSQSEGCLKSHVEDPTLQELRRVQTDLSKRLEVFYALGATQQ 618
Cdd:pfam15449  560 VPVPSGHQDWAEEEEGRTVVPPRPSTVSGSRRAPERQRRSQSEECLKSHVEDPTLQELRRVQRDLSQRLEAFYALGAKRQ 639

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   619 GQSREQCLPPRTSLLWPPTNCRVSPSSAISKFKASLTQNFSILPNQDKSIFQRGSPCFDSDQPCQGKAEKLPSAIFCGKK 698
Cdd:pfam15449  640 GQSKEQVLQPRAAALWPDSNCRVSPSSTISKLKASLTKNFSILPSQDKSILQKCSPHPEGEQPWQGKAEKLPNAIPSGEK 719

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   699 NSRAPGDNERDIRACPTRTSVKKLIETFSPTESPRMPRDCRNLGTSPCLRKWGVPAMPPRFPIYRGLAPLYPKPQISPAV 778
Cdd:pfam15449  720 ASEAPGAQDWSGRGCPTRTSVKKLIETFSPTESLRTLGDSRDSGPSPCLRKWGVPIMPPRFPIYRGLAPLYPKPQISPAA 799

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   779 GRDPLKLGMSWRPSAP-FPSLPPAEASEGEDIGGEMEEDLQNLPPPPLEILMDKSFTALEHPEC------SLEETLLPEL 851
Cdd:pfam15449  800 GRESLKVGPGWRPLAPiFPPLPTAEASKSEDTNCETEEDLEHLPPPPLEILMDKSFTSLEPPESskpagsSPEGTPVPGL 879

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   852 QEARRPKRTWASPKLKASMSPMDLLPSKGNGSSPRLQGTRPGSTSNVGNSRKLTLDLNSQQTANPSPEAEGGAQIQAPPE 931
Cdd:pfam15449  880 GEAGPTRRTWASPKLRASMSPIDLLPSKSTASPTRPRSTGPGSSKSGCNPRKLALDLNHPPAASHNPEAEGGAQSQAQAE 959

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   932 NTAGLSKHHQKAIPRHHANPTSGQSRALEPSLARFSRDPHSPEASRKGPERSPPGVRKASPPRAQWASQGGRRLQSLPST 1011
Cdd:pfam15449  960 EAASLSKQPRKAIPWHHSSHTSGQSRTSEPSLARPTRGPHSPEAPRQSQERSPPLVRKASPTRAHWAPRADKRHPSLPSS 1039

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049  1012 HGPSQPGLRAV---------LSSPSPPLSPRTLSPPATRKPTSPPCQYPQSNPAP---------GSPPVQRTETNTPSSA 1073
Cdd:pfam15449 1040 HRPAQPSLPTVqrspspplsPRAPSPPRSPRVLSPPTSKKRTSPPPQHKLPSPPPesppaqhklSSPPTQRTEASSPSSG 1119

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049  1074 SSSSPSVSPSRGSKDSSHSEDSEGTTNKASRGTCSVLFPATA-FCEAKSSFSTSHPQTLPEPGGLLRTPAGGWRGSAGPR 1152
Cdd:pfam15449 1120 PSPSPPTSPSQGHKETRDSEDSQAATAKASGNTCSIFCPATSsLFEAKSPFSTAHPLLPPEAGGPLETPAGCWRSSSGPR 1199

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049  1153 LRADSQKRTVLNALDALPFVRRTASDrqRQQGDPLQLPSSDWESHPCQNS--SSSSSEENAKQELPPWNNSRVPELQSSS 1230
Cdd:pfam15449 1200 LRADSQRRTALCALNPQPFVRRTASD--RRPGVRLQLPASGATGTASESQlsQSSSSEESPKKDTEPWSSPCAPELKGSS 1277

                         1290
                   ....*....|....*..
gi 564355049  1231 tKWTSPLELCVLGHGLQ 1247
Cdd:pfam15449 1278 -RWASPPELCVLGHGLQ 1293
 
Name Accession Description Interval E-value
Retinal pfam15449
Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. ...
 1-1247 0e+00

Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. Mutations of the gene encoding this protein have been associated with retinal disorders such as retinitis pigmentosa and late-onset progressive retinal atrophy. The function of this family of proteins is unknown, but it is likely to be important in the development and function of the retina.


Pssm-ID: 464722 [Multi-domain]  Cd Length: 1293  Bit Score: 1872.92  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049     1 MGCTPSHNVIVNSVAKSGIQFFKRPKAILPGCQWGSQKCPIPLLIQSSTFCDPGGELHPGARLAEETASSRKLPDMTEGL 80
Cdd:pfam15449    1 MGCTPSHSDIVNSVAKSGIQFLKKPKAILPGCQGGSERGSIPLLVKSSTCYDSGEGLSQGQRPAEEQPSSRWNQTMAEGL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049    81 CQL----------------PESQT--FHMNKSQSRMATDISFRTEGSHRTQEVEFSGKEGKENTPRETSERGREPKCHPS 142
Cdd:pfam15449   81 CQLtgdptsgkrkdmegliPETKTspSQLNKSQSHMAKDIPFKTQSSHRSQGAAFSGEESEESNTQETSKWGRKPKCHRS 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   143 DSQDHCCQTV---PEPKGKVDFPESLVKAHQHAYAYLHTSLSRYEAIVHLVQQASQTWELLQSMLSFLLLGFEEASQLLG 219
Cdd:pfam15449  161 GKQGHCCQTIlpaHESEGKVDFPEPLVKAHQHAYAYLHSSLSKYEAILHIAHQATQTQELLQPMVSFLLLCFDEVNQLLG 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   220 EISKDGEVLLREVRGDLAWPVRKGEPWEHPDLLQQLLQYTVNKLQVVHSTVAALTGSFLEGSSSYLRATAGHLEGKLSTK 299
Cdd:pfam15449  241 EISKDGEVLLQEVREDLAWPLKKGEPQEQPDLLQQLLQYTVSKLQVLHGTVASLTSSFLEGSSSYLHSTASHLENKLSTK 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   300 RGIDECLLRALGQLESLTSGSSDPGLLGPPLCSEDSGIGADNESVHSVEKLGKQASWDFAAELGEWKPGTAAQGEARPSG 379
Cdd:pfam15449  321 RGVDERLLRALGQLESLASGHGDPGVQDLPLCSEDSGIGADNESVHSVDKLGKQASWDLVPEPAEWKPGISPQVEARLSG 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   380 HAWQKGPYWTGPDRPQDCPLSGPRIAKVQPAVQDEARSSNTSSTSPEAVTSRPPEAAKSIPWDSLGTEIPVQTQLSRrSS 459
Cdd:pfam15449  401 HAWQQGPFWMGSDRPQDCPLSRPPTAKVQPAAQGEAGSPCPSSTGPENTTSRPLELGKSSPCDSLGTGIPVEAHLSK-GS 479

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   460 GLMGSPYLS-GDEDSSPEEEDELGSTDLHPEPQKALPSRPQSSPDPRESLFQPYSTKLRSPQAQEMILKMKEAISERIKF 538
Cdd:pfam15449  480 RLMDTPSLSeDEDSSPEEEEDEVSSTSLCTWQEKALPSRPQSSPAGTESPFQPHPRRLRSPQAQEMILKMKEAISERIKF 559

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   539 VPVPSRPQDWAEEEEGRSVVPPRPRSVSGCRRAPERQRRSQSEGCLKSHVEDPTLQELRRVQTDLSKRLEVFYALGATQQ 618
Cdd:pfam15449  560 VPVPSGHQDWAEEEEGRTVVPPRPSTVSGSRRAPERQRRSQSEECLKSHVEDPTLQELRRVQRDLSQRLEAFYALGAKRQ 639

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   619 GQSREQCLPPRTSLLWPPTNCRVSPSSAISKFKASLTQNFSILPNQDKSIFQRGSPCFDSDQPCQGKAEKLPSAIFCGKK 698
Cdd:pfam15449  640 GQSKEQVLQPRAAALWPDSNCRVSPSSTISKLKASLTKNFSILPSQDKSILQKCSPHPEGEQPWQGKAEKLPNAIPSGEK 719

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   699 NSRAPGDNERDIRACPTRTSVKKLIETFSPTESPRMPRDCRNLGTSPCLRKWGVPAMPPRFPIYRGLAPLYPKPQISPAV 778
Cdd:pfam15449  720 ASEAPGAQDWSGRGCPTRTSVKKLIETFSPTESLRTLGDSRDSGPSPCLRKWGVPIMPPRFPIYRGLAPLYPKPQISPAA 799

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   779 GRDPLKLGMSWRPSAP-FPSLPPAEASEGEDIGGEMEEDLQNLPPPPLEILMDKSFTALEHPEC------SLEETLLPEL 851
Cdd:pfam15449  800 GRESLKVGPGWRPLAPiFPPLPTAEASKSEDTNCETEEDLEHLPPPPLEILMDKSFTSLEPPESskpagsSPEGTPVPGL 879

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   852 QEARRPKRTWASPKLKASMSPMDLLPSKGNGSSPRLQGTRPGSTSNVGNSRKLTLDLNSQQTANPSPEAEGGAQIQAPPE 931
Cdd:pfam15449  880 GEAGPTRRTWASPKLRASMSPIDLLPSKSTASPTRPRSTGPGSSKSGCNPRKLALDLNHPPAASHNPEAEGGAQSQAQAE 959

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   932 NTAGLSKHHQKAIPRHHANPTSGQSRALEPSLARFSRDPHSPEASRKGPERSPPGVRKASPPRAQWASQGGRRLQSLPST 1011
Cdd:pfam15449  960 EAASLSKQPRKAIPWHHSSHTSGQSRTSEPSLARPTRGPHSPEAPRQSQERSPPLVRKASPTRAHWAPRADKRHPSLPSS 1039

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049  1012 HGPSQPGLRAV---------LSSPSPPLSPRTLSPPATRKPTSPPCQYPQSNPAP---------GSPPVQRTETNTPSSA 1073
Cdd:pfam15449 1040 HRPAQPSLPTVqrspspplsPRAPSPPRSPRVLSPPTSKKRTSPPPQHKLPSPPPesppaqhklSSPPTQRTEASSPSSG 1119

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049  1074 SSSSPSVSPSRGSKDSSHSEDSEGTTNKASRGTCSVLFPATA-FCEAKSSFSTSHPQTLPEPGGLLRTPAGGWRGSAGPR 1152
Cdd:pfam15449 1120 PSPSPPTSPSQGHKETRDSEDSQAATAKASGNTCSIFCPATSsLFEAKSPFSTAHPLLPPEAGGPLETPAGCWRSSSGPR 1199

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049  1153 LRADSQKRTVLNALDALPFVRRTASDrqRQQGDPLQLPSSDWESHPCQNS--SSSSSEENAKQELPPWNNSRVPELQSSS 1230
Cdd:pfam15449 1200 LRADSQRRTALCALNPQPFVRRTASD--RRPGVRLQLPASGATGTASESQlsQSSSSEESPKKDTEPWSSPCAPELKGSS 1277

                         1290
                   ....*....|....*..
gi 564355049  1231 tKWTSPLELCVLGHGLQ 1247
Cdd:pfam15449 1278 -RWASPPELCVLGHGLQ 1293
PHA03247 PHA03247
large tegument protein UL36; Provisional
 753-1067 3.14e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 3.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049  753 PAMPPRFPiYRGLAPLYPKPQ-ISPAVGRDPLKLGMSWRPSAPFPSLPPAEASEGEDIGGEMEEDLQNLPPPPleilMDK 831
Cdd:PHA03247 2557 PAAPPAAP-DRSVPPPRPAPRpSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPP----PSP 2631

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049  832 SFTALEHPECSLEETLLPElqearRPKRTWASPKLKASMSPMDLLPSKGNGSSPRlQGTRPGSTSNVGNSRKLTLDLNSQ 911
Cdd:PHA03247 2632 SPAANEPDPHPPPTVPPPE-----RPRDDPAPGRVSRPRRARRLGRAAQASSPPQ-RPRRRAARPTVGSLTSLADPPPPP 2705

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049  912 QTANPSPEAEGGAQIQAPPENTAGLSKHHQKAIPRHHANPTSgqsralePSLARFSRDPHSPEASRKGPERSPPGVRKAS 991
Cdd:PHA03247 2706 PTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAG-------PATPGGPARPARPPTTAGPPAPAPPAAPAAG 2778

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564355049  992 PPRAQWASQGGRRLQSLPSTHGPSQPGLRAVLSSPSPPLSPRTLSPPAtrkPTSPPCQYPQSNPAPGSPPVQRTET 1067
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG---PLPPPTSAQPTAPPPPPGPPPPSLP 2851
 
Name Accession Description Interval E-value
Retinal pfam15449
Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. ...
 1-1247 0e+00

Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. Mutations of the gene encoding this protein have been associated with retinal disorders such as retinitis pigmentosa and late-onset progressive retinal atrophy. The function of this family of proteins is unknown, but it is likely to be important in the development and function of the retina.


Pssm-ID: 464722 [Multi-domain]  Cd Length: 1293  Bit Score: 1872.92  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049     1 MGCTPSHNVIVNSVAKSGIQFFKRPKAILPGCQWGSQKCPIPLLIQSSTFCDPGGELHPGARLAEETASSRKLPDMTEGL 80
Cdd:pfam15449    1 MGCTPSHSDIVNSVAKSGIQFLKKPKAILPGCQGGSERGSIPLLVKSSTCYDSGEGLSQGQRPAEEQPSSRWNQTMAEGL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049    81 CQL----------------PESQT--FHMNKSQSRMATDISFRTEGSHRTQEVEFSGKEGKENTPRETSERGREPKCHPS 142
Cdd:pfam15449   81 CQLtgdptsgkrkdmegliPETKTspSQLNKSQSHMAKDIPFKTQSSHRSQGAAFSGEESEESNTQETSKWGRKPKCHRS 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   143 DSQDHCCQTV---PEPKGKVDFPESLVKAHQHAYAYLHTSLSRYEAIVHLVQQASQTWELLQSMLSFLLLGFEEASQLLG 219
Cdd:pfam15449  161 GKQGHCCQTIlpaHESEGKVDFPEPLVKAHQHAYAYLHSSLSKYEAILHIAHQATQTQELLQPMVSFLLLCFDEVNQLLG 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   220 EISKDGEVLLREVRGDLAWPVRKGEPWEHPDLLQQLLQYTVNKLQVVHSTVAALTGSFLEGSSSYLRATAGHLEGKLSTK 299
Cdd:pfam15449  241 EISKDGEVLLQEVREDLAWPLKKGEPQEQPDLLQQLLQYTVSKLQVLHGTVASLTSSFLEGSSSYLHSTASHLENKLSTK 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   300 RGIDECLLRALGQLESLTSGSSDPGLLGPPLCSEDSGIGADNESVHSVEKLGKQASWDFAAELGEWKPGTAAQGEARPSG 379
Cdd:pfam15449  321 RGVDERLLRALGQLESLASGHGDPGVQDLPLCSEDSGIGADNESVHSVDKLGKQASWDLVPEPAEWKPGISPQVEARLSG 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   380 HAWQKGPYWTGPDRPQDCPLSGPRIAKVQPAVQDEARSSNTSSTSPEAVTSRPPEAAKSIPWDSLGTEIPVQTQLSRrSS 459
Cdd:pfam15449  401 HAWQQGPFWMGSDRPQDCPLSRPPTAKVQPAAQGEAGSPCPSSTGPENTTSRPLELGKSSPCDSLGTGIPVEAHLSK-GS 479

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   460 GLMGSPYLS-GDEDSSPEEEDELGSTDLHPEPQKALPSRPQSSPDPRESLFQPYSTKLRSPQAQEMILKMKEAISERIKF 538
Cdd:pfam15449  480 RLMDTPSLSeDEDSSPEEEEDEVSSTSLCTWQEKALPSRPQSSPAGTESPFQPHPRRLRSPQAQEMILKMKEAISERIKF 559

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   539 VPVPSRPQDWAEEEEGRSVVPPRPRSVSGCRRAPERQRRSQSEGCLKSHVEDPTLQELRRVQTDLSKRLEVFYALGATQQ 618
Cdd:pfam15449  560 VPVPSGHQDWAEEEEGRTVVPPRPSTVSGSRRAPERQRRSQSEECLKSHVEDPTLQELRRVQRDLSQRLEAFYALGAKRQ 639

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   619 GQSREQCLPPRTSLLWPPTNCRVSPSSAISKFKASLTQNFSILPNQDKSIFQRGSPCFDSDQPCQGKAEKLPSAIFCGKK 698
Cdd:pfam15449  640 GQSKEQVLQPRAAALWPDSNCRVSPSSTISKLKASLTKNFSILPSQDKSILQKCSPHPEGEQPWQGKAEKLPNAIPSGEK 719

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   699 NSRAPGDNERDIRACPTRTSVKKLIETFSPTESPRMPRDCRNLGTSPCLRKWGVPAMPPRFPIYRGLAPLYPKPQISPAV 778
Cdd:pfam15449  720 ASEAPGAQDWSGRGCPTRTSVKKLIETFSPTESLRTLGDSRDSGPSPCLRKWGVPIMPPRFPIYRGLAPLYPKPQISPAA 799

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   779 GRDPLKLGMSWRPSAP-FPSLPPAEASEGEDIGGEMEEDLQNLPPPPLEILMDKSFTALEHPEC------SLEETLLPEL 851
Cdd:pfam15449  800 GRESLKVGPGWRPLAPiFPPLPTAEASKSEDTNCETEEDLEHLPPPPLEILMDKSFTSLEPPESskpagsSPEGTPVPGL 879

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   852 QEARRPKRTWASPKLKASMSPMDLLPSKGNGSSPRLQGTRPGSTSNVGNSRKLTLDLNSQQTANPSPEAEGGAQIQAPPE 931
Cdd:pfam15449  880 GEAGPTRRTWASPKLRASMSPIDLLPSKSTASPTRPRSTGPGSSKSGCNPRKLALDLNHPPAASHNPEAEGGAQSQAQAE 959

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049   932 NTAGLSKHHQKAIPRHHANPTSGQSRALEPSLARFSRDPHSPEASRKGPERSPPGVRKASPPRAQWASQGGRRLQSLPST 1011
Cdd:pfam15449  960 EAASLSKQPRKAIPWHHSSHTSGQSRTSEPSLARPTRGPHSPEAPRQSQERSPPLVRKASPTRAHWAPRADKRHPSLPSS 1039

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049  1012 HGPSQPGLRAV---------LSSPSPPLSPRTLSPPATRKPTSPPCQYPQSNPAP---------GSPPVQRTETNTPSSA 1073
Cdd:pfam15449 1040 HRPAQPSLPTVqrspspplsPRAPSPPRSPRVLSPPTSKKRTSPPPQHKLPSPPPesppaqhklSSPPTQRTEASSPSSG 1119

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049  1074 SSSSPSVSPSRGSKDSSHSEDSEGTTNKASRGTCSVLFPATA-FCEAKSSFSTSHPQTLPEPGGLLRTPAGGWRGSAGPR 1152
Cdd:pfam15449 1120 PSPSPPTSPSQGHKETRDSEDSQAATAKASGNTCSIFCPATSsLFEAKSPFSTAHPLLPPEAGGPLETPAGCWRSSSGPR 1199

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049  1153 LRADSQKRTVLNALDALPFVRRTASDrqRQQGDPLQLPSSDWESHPCQNS--SSSSSEENAKQELPPWNNSRVPELQSSS 1230
Cdd:pfam15449 1200 LRADSQRRTALCALNPQPFVRRTASD--RRPGVRLQLPASGATGTASESQlsQSSSSEESPKKDTEPWSSPCAPELKGSS 1277

                         1290
                   ....*....|....*..
gi 564355049  1231 tKWTSPLELCVLGHGLQ 1247
Cdd:pfam15449 1278 -RWASPPELCVLGHGLQ 1293
PHA03247 PHA03247
large tegument protein UL36; Provisional
 753-1067 3.14e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 3.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049  753 PAMPPRFPiYRGLAPLYPKPQ-ISPAVGRDPLKLGMSWRPSAPFPSLPPAEASEGEDIGGEMEEDLQNLPPPPleilMDK 831
Cdd:PHA03247 2557 PAAPPAAP-DRSVPPPRPAPRpSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPP----PSP 2631

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049  832 SFTALEHPECSLEETLLPElqearRPKRTWASPKLKASMSPMDLLPSKGNGSSPRlQGTRPGSTSNVGNSRKLTLDLNSQ 911
Cdd:PHA03247 2632 SPAANEPDPHPPPTVPPPE-----RPRDDPAPGRVSRPRRARRLGRAAQASSPPQ-RPRRRAARPTVGSLTSLADPPPPP 2705

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564355049  912 QTANPSPEAEGGAQIQAPPENTAGLSKHHQKAIPRHHANPTSgqsralePSLARFSRDPHSPEASRKGPERSPPGVRKAS 991
Cdd:PHA03247 2706 PTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAG-------PATPGGPARPARPPTTAGPPAPAPPAAPAAG 2778

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564355049  992 PPRAQWASQGGRRLQSLPSTHGPSQPGLRAVLSSPSPPLSPRTLSPPAtrkPTSPPCQYPQSNPAPGSPPVQRTET 1067
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG---PLPPPTSAQPTAPPPPPGPPPPSLP 2851
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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