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Conserved domains on  [gi|564356550|ref|XP_006240364|]
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pecanex-like protein 1 isoform X8 [Rattus norvegicus]

Protein Classification

PHA03307 and Pecanex_C domain-containing protein( domain architecture ID 13361933)

PHA03307 and Pecanex_C domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Pecanex_C pfam05041
Pecanex protein (C-terminus); This family consists of C terminal region of the pecanex protein ...
1673-1899 9.89e-138

Pecanex protein (C-terminus); This family consists of C terminal region of the pecanex protein homologs. The pecanex protein is a maternal-effect neurogenic gene found in Drosophila.


:

Pssm-ID: 461533  Cd Length: 227  Bit Score: 428.66  E-value: 9.89e-138
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564356550  1673 DVDKDSSLVTLCYGLCVLGRRALGTASHHMSSNLESFLYGLHALFKGDFRISSVRDEWIFADMELLRKVVVPGIRMSIKL 1752
Cdd:pfam05041    1 DSDSDSTLVTLCFALSLLGRRALGSASHSMSNSLESFLYGLHFLFKGDFRITSDKDEWVFMDLDLLRKVVAPAMRMALKL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564356550  1753 HQDHFTSPDEYDDPTVLYEAIVSHEKNLVIAHEGDPAWRSAVLANSPSLLALRHVMDDGTNEYKIIMLNRRYLSFRVIKV 1832
Cdd:pfam05041   81 HQDHFTDPDEYDENEVLYDAIHTYELVIVIEHESDPRWRVAVLSNNPSLLALRHVDDDGEDEYKIIMLNRRTLSFRVIKV 160
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564356550  1833 NKECVRGLWAGQQQELVFLRNRNPERGSIQNAKQALRNMINSSCDQPIGYPIFVSPLTTSYSDSHDQ 1899
Cdd:pfam05041  161 NRECVRGLWAGQQQELIFLRNRNRERGSIQNAKQALRNIINSSCDQPIGYPIYVSPLTTSYSNTHLQ 227
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
323-615 7.85e-07

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 54.79  E-value: 7.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564356550  323 PHSGTRESLVGQSCPLAQSQP----AADRRKSYSQPPTKCGKSRALNAEKSVDSLRSLSTRSSGSTESYCSGTDRDTNST 398
Cdd:PHA03307   35 LLSGSQGQLVSDSAELAAVTVvagaAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSP 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564356550  399 LSSYKSEQTSS---THIESILSEHDESPKVGDKSAR-------KEGCAESAEERCHGATDRRTSSDKTALEGSTPAGPPe 468
Cdd:PHA03307  115 DPPPPTPPPASpppSPAPDLSEMLRPVGSPGPPPAAsppaagaSPAAVASDAASSRQAALPLSSPEETARAPSSPPAEP- 193
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564356550  469 APDAQASEEKPDQVAPSSSASEDANKnphaneftvPGDRPPEqSAESKEEQGEKPSLSTDSKVCkDDGGKQKEGDVRPKS 548
Cdd:PHA03307  194 PPSTPPAAASPRPPRRSSPISASASS---------PAPAPGR-SAADDAGASSSDSSSSESSGC-GWGPENECPLPRPAP 262
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564356550  549 SSLIHRTTSAHKPGRRRTGKKRASSFDSSRHRDYVSFRGVSGTKPH-SAIFCHDEDSSDQSDLSRAPS 615
Cdd:PHA03307  263 ITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPApSSPRASSSSSSSRESSSSSTS 330
 
Name Accession Description Interval E-value
Pecanex_C pfam05041
Pecanex protein (C-terminus); This family consists of C terminal region of the pecanex protein ...
1673-1899 9.89e-138

Pecanex protein (C-terminus); This family consists of C terminal region of the pecanex protein homologs. The pecanex protein is a maternal-effect neurogenic gene found in Drosophila.


Pssm-ID: 461533  Cd Length: 227  Bit Score: 428.66  E-value: 9.89e-138
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564356550  1673 DVDKDSSLVTLCYGLCVLGRRALGTASHHMSSNLESFLYGLHALFKGDFRISSVRDEWIFADMELLRKVVVPGIRMSIKL 1752
Cdd:pfam05041    1 DSDSDSTLVTLCFALSLLGRRALGSASHSMSNSLESFLYGLHFLFKGDFRITSDKDEWVFMDLDLLRKVVAPAMRMALKL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564356550  1753 HQDHFTSPDEYDDPTVLYEAIVSHEKNLVIAHEGDPAWRSAVLANSPSLLALRHVMDDGTNEYKIIMLNRRYLSFRVIKV 1832
Cdd:pfam05041   81 HQDHFTDPDEYDENEVLYDAIHTYELVIVIEHESDPRWRVAVLSNNPSLLALRHVDDDGEDEYKIIMLNRRTLSFRVIKV 160
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564356550  1833 NKECVRGLWAGQQQELVFLRNRNPERGSIQNAKQALRNMINSSCDQPIGYPIFVSPLTTSYSDSHDQ 1899
Cdd:pfam05041  161 NRECVRGLWAGQQQELIFLRNRNRERGSIQNAKQALRNIINSSCDQPIGYPIYVSPLTTSYSNTHLQ 227
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
323-615 7.85e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 54.79  E-value: 7.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564356550  323 PHSGTRESLVGQSCPLAQSQP----AADRRKSYSQPPTKCGKSRALNAEKSVDSLRSLSTRSSGSTESYCSGTDRDTNST 398
Cdd:PHA03307   35 LLSGSQGQLVSDSAELAAVTVvagaAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSP 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564356550  399 LSSYKSEQTSS---THIESILSEHDESPKVGDKSAR-------KEGCAESAEERCHGATDRRTSSDKTALEGSTPAGPPe 468
Cdd:PHA03307  115 DPPPPTPPPASpppSPAPDLSEMLRPVGSPGPPPAAsppaagaSPAAVASDAASSRQAALPLSSPEETARAPSSPPAEP- 193
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564356550  469 APDAQASEEKPDQVAPSSSASEDANKnphaneftvPGDRPPEqSAESKEEQGEKPSLSTDSKVCkDDGGKQKEGDVRPKS 548
Cdd:PHA03307  194 PPSTPPAAASPRPPRRSSPISASASS---------PAPAPGR-SAADDAGASSSDSSSSESSGC-GWGPENECPLPRPAP 262
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564356550  549 SSLIHRTTSAHKPGRRRTGKKRASSFDSSRHRDYVSFRGVSGTKPH-SAIFCHDEDSSDQSDLSRAPS 615
Cdd:PHA03307  263 ITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPApSSPRASSSSSSSRESSSSSTS 330
 
Name Accession Description Interval E-value
Pecanex_C pfam05041
Pecanex protein (C-terminus); This family consists of C terminal region of the pecanex protein ...
1673-1899 9.89e-138

Pecanex protein (C-terminus); This family consists of C terminal region of the pecanex protein homologs. The pecanex protein is a maternal-effect neurogenic gene found in Drosophila.


Pssm-ID: 461533  Cd Length: 227  Bit Score: 428.66  E-value: 9.89e-138
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564356550  1673 DVDKDSSLVTLCYGLCVLGRRALGTASHHMSSNLESFLYGLHALFKGDFRISSVRDEWIFADMELLRKVVVPGIRMSIKL 1752
Cdd:pfam05041    1 DSDSDSTLVTLCFALSLLGRRALGSASHSMSNSLESFLYGLHFLFKGDFRITSDKDEWVFMDLDLLRKVVAPAMRMALKL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564356550  1753 HQDHFTSPDEYDDPTVLYEAIVSHEKNLVIAHEGDPAWRSAVLANSPSLLALRHVMDDGTNEYKIIMLNRRYLSFRVIKV 1832
Cdd:pfam05041   81 HQDHFTDPDEYDENEVLYDAIHTYELVIVIEHESDPRWRVAVLSNNPSLLALRHVDDDGEDEYKIIMLNRRTLSFRVIKV 160
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564356550  1833 NKECVRGLWAGQQQELVFLRNRNPERGSIQNAKQALRNMINSSCDQPIGYPIFVSPLTTSYSDSHDQ 1899
Cdd:pfam05041  161 NRECVRGLWAGQQQELIFLRNRNRERGSIQNAKQALRNIINSSCDQPIGYPIYVSPLTTSYSNTHLQ 227
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
323-615 7.85e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 54.79  E-value: 7.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564356550  323 PHSGTRESLVGQSCPLAQSQP----AADRRKSYSQPPTKCGKSRALNAEKSVDSLRSLSTRSSGSTESYCSGTDRDTNST 398
Cdd:PHA03307   35 LLSGSQGQLVSDSAELAAVTVvagaAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSP 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564356550  399 LSSYKSEQTSS---THIESILSEHDESPKVGDKSAR-------KEGCAESAEERCHGATDRRTSSDKTALEGSTPAGPPe 468
Cdd:PHA03307  115 DPPPPTPPPASpppSPAPDLSEMLRPVGSPGPPPAAsppaagaSPAAVASDAASSRQAALPLSSPEETARAPSSPPAEP- 193
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564356550  469 APDAQASEEKPDQVAPSSSASEDANKnphaneftvPGDRPPEqSAESKEEQGEKPSLSTDSKVCkDDGGKQKEGDVRPKS 548
Cdd:PHA03307  194 PPSTPPAAASPRPPRRSSPISASASS---------PAPAPGR-SAADDAGASSSDSSSSESSGC-GWGPENECPLPRPAP 262
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564356550  549 SSLIHRTTSAHKPGRRRTGKKRASSFDSSRHRDYVSFRGVSGTKPH-SAIFCHDEDSSDQSDLSRAPS 615
Cdd:PHA03307  263 ITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPApSSPRASSSSSSSRESSSSSTS 330
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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