|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
2725-2803 |
1.22e-26 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 105.37 E-value: 1.22e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564397520 2725 YLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKvtaSRPFTRFRTAVRVVIAVLRLRFLVKKW 2803
Cdd:pfam10495 2 LLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDDRPS---RKPRRKLKSAALAVIAIARMKRLAREW 77
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1043-1423 |
1.86e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 1.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1043 LSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKV 1122
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1123 EKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEE----NSVLWNQKETFTNeAKEREAALQKEVESLTRDQ 1198
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAldelRAELTLLNEEAAN-LRERLESLERRIAATERRL 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1199 WESRKQSEKDRATLLSqmrvLESELEDQLVQhrgCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEqaaerehereeFQQE 1278
Cdd:TIGR02168 841 EDLEEQIEELSEDIES----LAAEIEELEEL---IEELESELEALLNERASLEEALALLRSELEE-----------LSEE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1279 IKWLEGQLRQATRPRppGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIkkdladqqllIQEEEIKHLEETNENiqrQM 1358
Cdd:TIGR02168 903 LRELESKRSELRREL--EELREKLAQLELRLEGLEVRIDNLQERLSEEYS----------LTLEEAEALENKIED---DE 967
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564397520 1359 AQLQEELEKQRRSTEELEVVNSRN-SEIEELKAIIEHLQENQEQLQKAKaeeiEQLHEVIEKLQSE 1423
Cdd:TIGR02168 968 EEARRRLKRLENKIKELGPVNLAAiEEYEELKERYDFLTAQKEDLTEAK----ETLEEAIEEIDRE 1029
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
120-587 |
7.16e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.97 E-value: 7.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 120 LELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQHAREKEEmaLRNEQE 199
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE--LEEAEE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 200 TAELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKELSAkhQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVS 279
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA--AAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 280 LKNLEAQHQAAIRKLQEDLRSEhcQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEIRHLWSQLEsMKTNREEQ 359
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEE--AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE-AEADYEGF 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 360 NGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLRVYFEKKLNDAEKtyqedLTVFQQRLQEAREESLESAE 439
Cdd:COG1196 507 LEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAA-----AIEYLKAAKAGRATFLPLDK 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 440 ISSSCMFPEETSGRERKEPPDPLDLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDlkRDAEEKL 519
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE--GEGGSAG 659
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564397520 520 ASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLL 587
Cdd:COG1196 660 GSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
154-858 |
2.60e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.17 E-value: 2.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 154 ELREMLNGRRAQELALLQSRQQCElELMREQHAREKEEMalRNEQETAELKEKFRSEMEKTVQMMETLKQDWESERELCL 233
Cdd:PTZ00121 1138 DARKAEEARKAEDAKRVEIARKAE-DARKAEEARKAEDA--KKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKA 1214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 234 ETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAI-----RKLQEDLRSEHCQYLQD 308
Cdd:PTZ00121 1215 EEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIkaeeaRKADELKKAEEKKKADE 1294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 309 LElRFREKEKAKELELETLQASYEDLKAQSQEEIRhlwSQLESMKTNREEQNGSWEPLLAQAShleelqhlrsdfAQQQQ 388
Cdd:PTZ00121 1295 AK-KAEEKKKADEAKKKAEEAKKADEAKKKAEEAK---KKADAAKKKAEEAKKAAEAAKAEAE------------AAADE 1358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 389 QERAQHESELEHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISSScmfpeetsgRERKEPPDPLDLQLEQ 468
Cdd:PTZ00121 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA---------AAAKKKADEAKKKAEE 1429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 469 PKAQGSLIEDYQEKLSNAEEKI---ELMKQEFQKKEAEWELSREDLKRDAEEKLASMflELREKAES--EKLSIINRFEL 543
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKADEAKKkaeEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD--EAKKKAEEakKKADEAKKAAE 1507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 544 RESSMRHLQDQQAAQISDLERSLREQQG--HLRQLEQELTRDEVLLCSQCGKEPSVAQDEKSAillREKEDCALQLltaq 621
Cdd:PTZ00121 1508 AKKKADEAKKAEEAKKADEAKKAEEAKKadEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK---KAEEDKNMAL---- 1580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 622 nRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQLAslESKQQAllethvak 701
Cdd:PTZ00121 1581 -RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA--EEKKKA-------- 1649
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 702 MQVKHDAEISALEKRHLSNLDELESCYVADIQTIRDEHKKALELLRAELEEqlQKKDSCHREILTQELEKL-KLKHAEEL 780
Cdd:PTZ00121 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE--AKKAEELKKKEAEEKKKAeELKKAEEE 1727
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564397520 781 qsvrNSLRVKMSAQHTESGKGPAADLQGAHQQKAPAMALHNEGHQLEEDGDAALGGADTEDLQHHAEPREREGPHTVE 858
Cdd:PTZ00121 1728 ----NKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2105-2405 |
1.02e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 1.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2105 LLAEIQALRAQLRMTHLqnqEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQekciandLQKTLSKEQEAASDVR 2184
Cdd:COG1196 218 LKEELKELEAELLLLKL---RELEAELEELEAELEELEAELEELEAELAELEAELEE-------LRLELEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2185 KRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEVLRLRAVLDGKENELKVVLEELECERGKGQVLQAQQEEQQLRH 2264
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2265 LQREGQSSRALEELKISLEKQLAQNNQLCVALKHERaakdNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLE 2344
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLE----ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564397520 2345 LSEALQ-HERLLTEQLSRNAQEACARQDTQAQHALLRKLKAEKARALELEAMLEKVQKQAAH 2405
Cdd:COG1196 444 LEEAAEeEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG 505
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1059-1546 |
1.15e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 1.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1059 KQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESE 1138
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1139 QQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQwESRKQSEKDRATLLSQMRV 1218
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE-EELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1219 LESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRprppgpr 1298
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE------- 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1299 dsQCAKLDEEVELLQEKLREKLDgfNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQ---EELEKQRRSTEEL 1375
Cdd:COG1196 471 --EAALLEAALAELLEELAEAAA--RLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveAAYEAALEAALAA 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1376 EVVNSRNSEIEELKAIIEHLQENQ---------EQLQKAKAEEIEQLHEVIEKLQSELSLMGPTVHEMSDLPPGSLHTEL 1446
Cdd:COG1196 547 ALQNIVVEDDEVAAAAIEYLKAAKagratflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRT 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1447 SCLQAEGMGGQAL------HNELQAAQAAKGAFGQLLADHGHSQALEALQERLQDAEAAAARHLTELEHCVALRQAEVEA 1520
Cdd:COG1196 627 LVAARLEAALRRAvtlagrLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE 706
|
490 500
....*....|....*....|....*.
gi 564397520 1521 MASRIQEFEATLKAKEAIIVQRDLEI 1546
Cdd:COG1196 707 RELAEAEEERLEEELEEEALEEQLEA 732
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2281-2533 |
2.23e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 2.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2281 SLEKQLAQNNQLCVALKHERaakdnlqKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEAL----QHERLLT 2356
Cdd:TIGR02168 236 ELREELEELQEELKEAEEEL-------EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIsrleQQKQILR 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2357 EQLSRNAQEACARQDTQAQhaLLRKLKAEKARALELEAMLEKVQKQAAHTQQqleaqaqerclELRREKEVSGNLRSAVD 2436
Cdd:TIGR02168 309 ERLANLERQLEELEAQLEE--LESKLDELAEELAELEEKLEELKEELESLEA-----------ELEELEAELEELESRLE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2437 ALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKL----RELELQRQR 2512
Cdd:TIGR02168 376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELeeleEELEELQEE 455
|
250 260
....*....|....*....|.
gi 564397520 2513 DEHKIEQLQRLVRELRWKEEA 2533
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQA 476
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
136-543 |
2.74e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 2.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 136 QLELTQANLQKeKETALTELREMLNGRRAQELALLQSRqqcelELMREQHAREKEEMALRNEQETAELkEKFRSEMEKTV 215
Cdd:TIGR02168 180 KLERTRENLDR-LEDILNELERQLKSLERQAEKAERYK-----ELKAELRELELALLVLRLEELREEL-EELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 216 QMMETLkQDWESERELCLETLRKElsakhQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIRKLQ 295
Cdd:TIGR02168 253 EELEEL-TAELQELEEKLEELRLE-----VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 296 EDLRSEHCQylqdlelrfREKEKAKELELETLQASYEDLKAQSQEEIRhlwsQLESMKTNREEQNgswepllaqashlEE 375
Cdd:TIGR02168 327 ELESKLDEL---------AEELAELEEKLEELKEELESLEAELEELEA----ELEELESRLEELE-------------EQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 376 LQHLRSDFAqQQQQERAQHESELEHLrvyfEKKLNDAEKTYQEdltvfQQRLQEAREESLESAEIssscmfpeetsgrer 455
Cdd:TIGR02168 381 LETLRSKVA-QLELQIASLNNEIERL----EARLERLEDRRER-----LQQEIEELLKKLEEAEL--------------- 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 456 keppDPLDLQLEQPKAQgslIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKRDAEEK--LASMFLELREKAESE 533
Cdd:TIGR02168 436 ----KELQAELEELEEE---LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLdsLERLQENLEGFSEGV 508
|
410
....*....|
gi 564397520 534 KLSIINRFEL 543
Cdd:TIGR02168 509 KALLKNQSGL 518
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1059-1424 |
3.24e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.23 E-value: 3.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1059 KQLEDARQLHRCVEKEFrhrdEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESE 1138
Cdd:PRK03918 186 KRTENIEELIKEKEKEL----EEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1139 QQL---IVELEDLRKQLQQASRELLTLKEEnSVLWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEK--DRATLL 1213
Cdd:PRK03918 262 RELeerIEELKKEIEELEEKVKELKELKEK-AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEleEKEERL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1214 SQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLrsqrqfmdeqaaeREHEREEFQQEIKWLEgqlrqatrpr 1293
Cdd:PRK03918 341 EELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRL-------------TGLTPEKLEKELEELE---------- 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1294 ppgprdsqcaKLDEEVELLQEKLREKLDGFNELVIKKDLADQQL------------LIQEEEIKHLEETN----ENIQRQ 1357
Cdd:PRK03918 398 ----------KAKEEIEEEISKITARIGELKKEIKELKKAIEELkkakgkcpvcgrELTEEHRKELLEEYtaelKRIEKE 467
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564397520 1358 MAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSEL 1424
Cdd:PRK03918 468 LKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKL 534
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2076-2533 |
8.81e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 8.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2076 LVKKLEKVIQEQGDLQKVREHAclpDRSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELL 2155
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKKAEEA---KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2156 AYKVEQEKCIANDLQKTLSKEQEA------ASDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEV-----LR 2224
Cdd:PTZ00121 1397 KKKAEEDKKKADELKKAAAAKKKAdeakkkAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAkkadeAK 1476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2225 LRAVLDGKENELKVVLEElecERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNnqlcvALKHERAAKD 2304
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEE---AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE-----AKKAEEKKKA 1548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2305 NLQKELQiEASRCEALLAQEKGQLSELRKSL---EAERSRSLELSEALQHERLLTEQLSRNAQEACARQDTQAQHALLRK 2381
Cdd:PTZ00121 1549 DELKKAE-ELKKAEEKKKAEEAKKAEEDKNMalrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK 1627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2382 LKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAVDALQTHKQELGCCLEREREKAAWLQA 2461
Cdd:PTZ00121 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEEL 1707
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564397520 2462 ELEQLSARVKQQEARQDEK----RMDRRSSREDLDKRKwqrvKEKLRELELQRQRDEHKIEQLQRLVRELRWKEEA 2533
Cdd:PTZ00121 1708 KKKEAEEKKKAEELKKAEEenkiKAEEAKKEAEEDKKK----AEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEA 1779
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
119-579 |
1.32e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 54.46 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 119 SLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQeLALLQSRQQCELELMREQHAREKEEMALRNEQ 198
Cdd:pfam12128 252 TLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQ-WKEKRDELNGELSAADAAVAKDRSELEALEDQ 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 199 ETAELKEkfrsEMEKTVQMMETLKQdWESERELcLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEV 278
Cdd:pfam12128 331 HGAFLDA----DIETAAADQEQLPS-WQSELEN-LEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIRE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 279 SLKNLEAQHQAAIRKLQEDLRSEHCQYLQDL-ELRFREKEKAKELELETLQASY-EDLK---AQSQEEIRHLWSQLESMK 353
Cdd:pfam12128 405 ARDRQLAVAEDDLQALESELREQLEAGKLEFnEEEYRLKSRLGELKLRLNQATAtPELLlqlENFDERIERAREEQEAAN 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 354 TNREeqngSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLrvyfekkLNDAEKTYQEDLTVFQQRLQEAREE 433
Cdd:pfam12128 485 AEVE----RLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQ-------LFPQAGTLLHFLRKEAPDWEQSIGK 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 434 SLESAEISSSCMFPEETSGR--------------ERKEPPDPLDL--QLEQPKAQ-GSLIEDYQEKLSNAEEKIELMKQE 496
Cdd:pfam12128 554 VISPELLHRTDLDPEVWDGSvggelnlygvkldlKRIDVPEWAASeeELRERLDKaEEALQSAREKQAAAEEQLVQANGE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 497 FQKKEAEWELSREDLKrDAEEKLASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQL 576
Cdd:pfam12128 634 LEKASREETFARTALK-NARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREA 712
|
...
gi 564397520 577 EQE 579
Cdd:pfam12128 713 RTE 715
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
324-1165 |
2.85e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 2.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 324 LETLQASYEDLKAQS---------QEEIRHLwsQLESMKTNREEQNGSWEPLLAQashLEELQHLRSDFAQQQQQERAQH 394
Cdd:TIGR02168 195 LNELERQLKSLERQAekaerykelKAELREL--ELALLVLRLEELREELEELQEE---LKEAEEELEELTAELQELEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 395 EsELEHLRVYFEKKLNDAEKTYQE------DLTVFQQRLQEAREESLESAEissscmfpeetsgrerkeppdPLDLQLEQ 468
Cdd:TIGR02168 270 E-ELRLEVSELEEEIEELQKELYAlaneisRLEQQKQILRERLANLERQLE---------------------ELEAQLEE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 469 PKAQgslIEDYQEKLSNAEEKIELMKQEFQKKEAEWElSREDLKRDAEEKLAsmflELREKAESEKLsiiNRFELRESsm 548
Cdd:TIGR02168 328 LESK---LDELAEELAELEEKLEELKEELESLEAELE-ELEAELEELESRLE----ELEEQLETLRS---KVAQLELQ-- 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 549 rhlQDQQAAQISDLERSLREQQGHLRQLEQELtrdevllcSQCGKEPSVAQDEKSAILLREKEDCALQLLTAQNRFLEER 628
Cdd:TIGR02168 395 ---IASLNNEIERLEARLERLEDRRERLQQEI--------EELLKKLEEAELKELQAELEELEEELEELQEELERLEEAL 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 629 KEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQllalrmeletkHHSELTEQLASLESKQQALLETH-VAKMQVKHD 707
Cdd:TIGR02168 464 EELREELEEAEQALDAAERELAQLQARLDSLERLQE-----------NLEGFSEGVKALLKNQSGLSGILgVLSELISVD 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 708 AEIS-----ALEKRHLSNLDELESCYVADIQTIRdEHKKALELLRAELEEQLQKKDSCHREILTQELEKLKLkhAEELQS 782
Cdd:TIGR02168 533 EGYEaaieaALGGRLQAVVVENLNAAKKAIAFLK-QNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGV--AKDLVK 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 783 VRNSLRVKMSAqhTESGKGPAADLQGAHQQKAPAMALHN----EGHQLEEDGDAALGGADTEDLQHHAEPREREGPHTVE 858
Cdd:TIGR02168 610 FDPKLRKALSY--LLGGVLVVDDLDNALELAKKLRPGYRivtlDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIE 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 859 MQTSQTELAKpQELQASQDQGAQVRDQVFLLSRELEECRGELEQLQQRRERENQEGATLicmlRADVDLAQSEGKALRDA 938
Cdd:TIGR02168 688 ELEEKIAELE-KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL----EERIAQLSKELTELEAE 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 939 LRRLLDLFGETLKAAVTLKSRISERAGLLLDHEDAVDTSGAQLAAAALgemwpdegllDIDRTLPEGAETSSVCEISSHV 1018
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA----------ELTLLNEEAANLRERLESLERR 832
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1019 CESFFMSPENTQECEQPIRKVYQSLSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLRE 1098
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE 912
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564397520 1099 ESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLR-KQLQQASRELLTLKEE 1165
Cdd:TIGR02168 913 LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIeDDEEEARRRLKRLENK 980
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2215-2527 |
9.42e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 9.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2215 LDKVQQEVLRLRAVLDGKENELKVVLEELEcERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQLCV 2294
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELE-ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2295 ALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEALQherllteQLSRNAQEAcarqdTQA 2374
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT-------LLNEEAANL-----RER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2375 QHALLRKLKAEKARALELEAMLEKVQKQAAhTQQQLEAQAQERCLELRREKEVSGNLRS----AVDALQTHKQELGCCLE 2450
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIE-SLAAEIEELEELIEELESELEALLNERAsleeALALLRSELEELSEELR 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2451 REREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLD---KRKWQRVKEKLRELELQRQRDEHKIEQLQRLVREL 2527
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSeeySLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
549-1421 |
1.15e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.13 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 549 RHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLLCSQCGKEPSVAQDEKSAI------LLREKEDCALQLLTAQN 622
Cdd:pfam02463 154 RRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALeyyqlkEKLELEEEYLLYLDYLK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 623 RFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQLASLESKQQALLETHVAKM 702
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 703 QVKhdaEISALEKRHLSNLDELESCYVADIQTIRDEHKKALELLRAELEEQLQKKDscHREILTQELEKLKLKHAEELQS 782
Cdd:pfam02463 314 EKL---KESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQE--KLEQLEEELLAKKKLESERLSS 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 783 VRNSLRVKMSAQHTESGKgpaADLQGAHQQKapamalhNEGHQLEEDGDAALGGADTEDLQHHAEPREREGPHTVEMQTS 862
Cdd:pfam02463 389 AAKLKEEELELKSEEEKE---AQLLLELARQ-------LEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQEL 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 863 qTELAKPQELQASQDQGAQVRDQVFLLSRELEECRGELEQLQQRRERENQEGATLI---------CMLRADVDLAQSEGK 933
Cdd:pfam02463 459 -KLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLalikdgvggRIISAHGRLGDLGVA 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 934 ALRDALRRLLDLFGETLKAAVTLKSRISERAGLLLDHEDAVDTSGAQLAAAALGEMWPDEGLLDIDRTLPEGAETSSVCE 1013
Cdd:pfam02463 538 VENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADE 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1014 ISSHVCESFFMSPENTQECEQPIRKVYQSLSTAV----EGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQ 1089
Cdd:pfam02463 618 DDKRAKVVEGILKDTELTKLKESAKAKESGLRKGvsleEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRR 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1090 QELLERlrEESAAKDRLALELHTAEGLLEGFKVEKADLQEalGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVL 1169
Cdd:pfam02463 698 QLEIKK--KEQREKEELKKLKLEAEELLADRVQEAQDKIN--EELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKE 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1170 WNQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLAT 1249
Cdd:pfam02463 774 KELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE 853
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1250 LDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATrprppgprdSQCAKLDEEVELLQEKLREKLDGFNELVIK 1329
Cdd:pfam02463 854 EELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEK---------EKEEKKELEEESQKLNLLEEKENEIEERIK 924
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1330 KDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEE 1409
Cdd:pfam02463 925 EEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEK 1004
|
890
....*....|..
gi 564397520 1410 IEQLHEVIEKLQ 1421
Cdd:pfam02463 1005 KKLIRAIIEETC 1016
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1058-1452 |
3.50e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.72 E-value: 3.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1058 SKQLEDARQLHRCVEKEFrhrdEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEES 1137
Cdd:pfam05483 390 SSELEEMTKFKNNKEVEL----EELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTS 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1138 EQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTrdqwESRKQSEKdratLLSQMR 1217
Cdd:pfam05483 466 EEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDII----NCKKQEER----MLKQIE 537
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1218 VLEseledqlvqhrgcaqlaEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQAtrprppgp 1297
Cdd:pfam05483 538 NLE-----------------EKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKIL-------- 592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1298 rDSQCAKLDEEVElLQEKLREKLDGFNELVIKKDLAD-QQLLIQEEEIKHLEETNENIQRQMAQL----QEELEKQRRST 1372
Cdd:pfam05483 593 -ENKCNNLKKQIE-NKNKNIEELHQENKALKKKGSAEnKQLNAYEIKVNKLELELASAKQKFEEIidnyQKEIEDKKISE 670
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1373 EELEvvnsrnSEIEELKAIIEHLQENQEQLQKAKAEEI-----------EQLHEVIEKLQSELSLMGPTVHEMSDLpPGS 1441
Cdd:pfam05483 671 EKLL------EEVEKAKAIADEAVKLQKEIDKRCQHKIaemvalmekhkHQYDKIIEERDSELGLYKNKEQEQSSA-KAA 743
|
410
....*....|.
gi 564397520 1442 LHTELSCLQAE 1452
Cdd:pfam05483 744 LEIELSNIKAE 754
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
234-534 |
3.80e-05 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 49.24 E-value: 3.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 234 ETLRKELSAKHQSEMEGLQNQFQKELSEQKaelekifqaKHEAEVSLKNLEAQHQAAIRKlQEDLRSEHCQYLQDLELRF 313
Cdd:NF033838 109 EKSEAELTSKTKKELDAAFEQFKKDTLEPG---------KKVAEATKKVEEAEKKAKDQK-EEDRRNYPTNTYKTLELEI 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 314 REKE-KAKELELETLQAsyEDLKAQSQEEIRHLWSQLESMKtnreeqngswepllAQASHLEELQHLRsdfaqqqqqERA 392
Cdd:NF033838 179 AESDvEVKKAELELVKE--EAKEPRDEEKIKQAKAKVESKK--------------AEATRLEKIKTDR---------EKA 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 393 QHESEL---EHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISSSCMFPEETsgrerkePPDPlDLQLEQP 469
Cdd:NF033838 234 EEEAKRradAKLKEAVEKNVATSEQDKPKRRAKRGVLGEPATPDKKENDAKSSDSSVGEET-------LPSP-SLKPEKK 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 470 KAQGS-LIEDYQEKLSNAEEK--------------IELMKQEFQKKEAEWELSREDLKRDA-EEKLAsmflELREKAESE 533
Cdd:NF033838 306 VAEAEkKVEEAKKKAKDQKEEdrrnyptntyktleLEIAESDVKVKEAELELVKEEAKEPRnEEKIK----QAKAKVESK 381
|
.
gi 564397520 534 K 534
Cdd:NF033838 382 K 382
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1329-1551 |
4.44e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 4.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1329 KKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELE-VVNSRNSEIEELKAIIEHLQENQEQLQKAKA 1407
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALArRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1408 EEIEQLHEVIEKLQselsLMGPTVHEMSDLPPGSLHTELSCLQAEGMGGQALHNELQAAQAAKGAFGQLladhghSQALE 1487
Cdd:COG4942 101 AQKEELAELLRALY----RLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL------RAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564397520 1488 ALQERLQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQRDLEIDAVNK 1551
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
508-1159 |
1.34e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 508 REDLKRDAEekLASMFLELREKAE----SEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRD 583
Cdd:COG1196 202 LEPLERQAE--KAERYRELKEELKeleaELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 584 EVLLcsqcgkepsVAQDEKSAILLREKEDC--ALQLLTAQNRFLEERKEIMEKFAKEQDAFLLDTQEKhshelqllqqgh 661
Cdd:COG1196 280 ELEL---------EEAQAEEYELLAELARLeqDIARLEERRRELEERLEELEEELAELEEELEELEEE------------ 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 662 qqqLLALRMELEtkhhsELTEQLASLESKQQALLEthvakmqvkhdaEISALEKRHLSNLDELESCYVADIQTIRDEHKK 741
Cdd:COG1196 339 ---LEELEEELE-----EAEEELEEAEAELAEAEE------------ALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 742 ALELLRAELEEQLQKKDschREILTQELEKLKLKHAEELQSVRNSLRVKMSAQHTEsgkgpAADLQGAHQQKAPAMALHN 821
Cdd:COG1196 399 AAQLEELEEAEEALLER---LERLEEELEELEEALAELEEEEEEEEEALEEAAEEE-----AELEEEEEALLELLAELLE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 822 EGHQLEEDGDAALGGADTEDLQHHAEPREREGPHtvEMQTSQTELAKPQELQASQDQGAQVRDQVFLLSRELEECRGELE 901
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARLLLLLEAEADYE--GFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAL 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 902 QLQQRRERENQEGAtlicmlrADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRISERAGLLLDHEDAVDTSGAQL 981
Cdd:COG1196 549 QNIVVEDDEVAAAA-------IEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 982 AAAALGEMWPDEGLLDIDRTLPEGAETSSvceisshvcesffmspentqeceQPIRKVYQSLSTAVEGLLDMALDSSKQL 1061
Cdd:COG1196 622 LLGRTLVAARLEAALRRAVTLAGRLREVT-----------------------LEGEGGSAGGSLTGGSRRELLAALLEAE 678
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1062 EDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQL 1141
Cdd:COG1196 679 AELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPE 758
|
650
....*....|....*...
gi 564397520 1142 IVELEDLRKQLQQASREL 1159
Cdd:COG1196 759 PPDLEELERELERLEREI 776
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
2290-2533 |
2.28e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2290 NQLCVALKHERAAKDNLQKElQIEASRCEALLAQEKGQLSEL---RKSLEAERSRSLELSEAL----QHERLLTE---QL 2359
Cdd:pfam17380 272 NQLLHIVQHQKAVSERQQQE-KFEKMEQERLRQEKEEKAREVerrRKLEEAEKARQAEMDRQAaiyaEQERMAMErerEL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2360 SRNAQEACARQDTQAQHallRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAV---- 2435
Cdd:pfam17380 351 ERIRQEERKRELERIRQ---EEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEqira 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2436 ---DALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKLRELELQRQR 2512
Cdd:pfam17380 428 eqeEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQA 507
|
250 260
....*....|....*....|.
gi 564397520 2513 DEHKIEQLQRLVRELRWKEEA 2533
Cdd:pfam17380 508 MIEEERKRKLLEKEMEERQKA 528
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2293-2535 |
3.02e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 3.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2293 CVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEALqheRLLTEQLsrNAQEACARQDT 2372
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRI---RALEQEL--AALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2373 QAQHALLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAVDALQTHKQElgccLERE 2452
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE----LAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2453 REKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKwQRVKEKLRELELQRQRDEHKIEQLQRLVRELRWKEE 2532
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKEL-AELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
...
gi 564397520 2533 APG 2535
Cdd:COG4942 245 AAG 247
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
2070-2526 |
2.31e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2070 LGDYNSLVKKLEKVIQEQGDLQKVRehaclpdrssllaeiqalRAQLRMTHLQNQEKLQQLCA---ALTSTEARGSQREH 2146
Cdd:pfam15921 80 LEEYSHQVKDLQRRLNESNELHEKQ------------------KFYLRQSVIDLQTKLQEMQMerdAMADIRRRESQSQE 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2147 QLRRQVELLAYKVEQEKCIANDLQKTLSKEQEaasDVRKRLMVEQGAVQDLKSELHACKQEN---------------TNL 2211
Cdd:pfam15921 142 DLRNQLQNTVHELEAAKCLKEDMLEDSNTQIE---QLRKMMLSHEGVLQEIRSILVDFEEASgkkiyehdsmstmhfRSL 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2212 LESLDKVQQEVLRLRAVLDGKENELKVVLEELECERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQ 2291
Cdd:pfam15921 219 GSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQ 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2292 LCVALKHERAAKDNLQKELQIeaSRCEALLAQEKGQLSELRKSLEaERSRSLELSEALQHERLLTEQLSRN--AQEAcAR 2369
Cdd:pfam15921 299 SQLEIIQEQARNQNSMYMRQL--SDLESTVSQLRSELREAKRMYE-DKIEELEKQLVLANSELTEARTERDqfSQES-GN 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2370 QDTQAQHALLRKLKAEKARALELEAMLEKVQKQAAH--TQQQLEAQAQERCLELRR--------EKEVSGNLRSAVDALQ 2439
Cdd:pfam15921 375 LDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNsiTIDHLRRELDDRNMEVQRleallkamKSECQGQMERQMAAIQ 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2440 THKQELgcclererEKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLD------KRKWQRVKEKLRELELQRQRD 2513
Cdd:pfam15921 455 GKNESL--------EKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSdltaslQEKERAIEATNAEITKLRSRV 526
|
490
....*....|...
gi 564397520 2514 EHKIEQLQRLVRE 2526
Cdd:pfam15921 527 DLKLQELQHLKNE 539
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
1303-1423 |
2.35e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 42.70 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1303 AKLDEEVELLQE---KLREKLDGFN-ELVIKKDLA------DQQLL-IQEEEIKHLEETNENIQRQMAQLQEELEkqrrs 1371
Cdd:smart00787 161 KLLMKELELLNSikpKLRDRKDALEeELRQLKQLEdeledcDPTELdRAKEKLKKLLQEIMIKVKKLEELEEELQ----- 235
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 564397520 1372 teELE-VVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1423
Cdd:smart00787 236 --ELEsKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
198-345 |
3.26e-03 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 42.18 E-value: 3.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 198 QETAELKEKFRSEMEKTVQMMETLKQDWESeRELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKifQAKHEAE 277
Cdd:cd16269 149 EDREKLVEKYRQVPRKGVKAEEVLQEFLQS-KEAEAEAILQADQALTEKEKEIEAERAKAEAAEQERKLLE--EQQRELE 225
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 278 VSLKNLEAQHQAAIRKLQEDLRSEHCQYLQDLE--LRFREKEKAKELELETLQASyedlkAQSQEEIRHL 345
Cdd:cd16269 226 QKLEDQERSYEEHLRQLKEKMEEERENLLKEQEraLESKLKEQEALLEEGFKEQA-----ELLQEEIRSL 290
|
|
| BspD6I-like |
cd22316 |
nicking endonuclease Nt.BspD6I and similar endonucleases; Heterodimeric type II restriction ... |
1303-1423 |
3.31e-03 |
|
nicking endonuclease Nt.BspD6I and similar endonucleases; Heterodimeric type II restriction endonuclease nicking endonuclease BspD6I recognizes a pseudosymmetric DNA sequence (5'-GAGTC) and cuts both strands outside the recognition motif 4 nucleotides downstream. It forms the large subunit in a heterodimeric arrangement. This catalytic domain/subunit belongs to a superfamily of PDDEXK nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Pssm-ID: 411720 Cd Length: 345 Bit Score: 42.67 E-value: 3.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1303 AKLDEEVELLQEKLREKLDGFNELVIKKDLADqqlliqeeeIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNS-- 1380
Cdd:cd22316 38 EKKVEVEEILSNVERKPIFFDSDDDYLEYLFN---------PALPPLDNDDKANLVLELLRIRLKERGILIKISSKPLlt 108
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 564397520 1381 ---RNSEIEELKAIIEHLQENQeqLQKAKAEEIEQLHEVIEKLQSE 1423
Cdd:cd22316 109 padLNIIRKELENKLKKLREKK--YAKRQAEDWEEILEYFDLIENR 152
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1328-1602 |
3.89e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1328 IKKDLADQQLLIQ----EEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQ 1403
Cdd:TIGR02168 218 LKAELRELELALLvlrlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1404 KAKAEEIEQLHEVIEKLQSELSlMGPTVHEMSDLPPGSLHTELSCLQAEGMGGQALHNELQAAQAAKGAFGQLLadhghS 1483
Cdd:TIGR02168 298 SRLEQQKQILRERLANLERQLE-ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL-----E 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1484 QALEALQERLQDAEAAAArhltELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQRDLEIDAVNKWKVSHSVELEAL 1563
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVA----QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 564397520 1564 LLALAHFQHA-VEQQTSATPDEPPKLQQLLVQCARLSHQL 1602
Cdd:TIGR02168 448 ELEELQEELErLEEALEELREELEEAEQALDAAERELAQL 487
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
2725-2803 |
1.22e-26 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 105.37 E-value: 1.22e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564397520 2725 YLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKvtaSRPFTRFRTAVRVVIAVLRLRFLVKKW 2803
Cdd:pfam10495 2 LLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDDRPS---RKPRRKLKSAALAVIAIARMKRLAREW 77
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1043-1423 |
1.86e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 1.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1043 LSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKV 1122
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1123 EKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEE----NSVLWNQKETFTNeAKEREAALQKEVESLTRDQ 1198
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAldelRAELTLLNEEAAN-LRERLESLERRIAATERRL 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1199 WESRKQSEKDRATLLSqmrvLESELEDQLVQhrgCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEqaaerehereeFQQE 1278
Cdd:TIGR02168 841 EDLEEQIEELSEDIES----LAAEIEELEEL---IEELESELEALLNERASLEEALALLRSELEE-----------LSEE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1279 IKWLEGQLRQATRPRppGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIkkdladqqllIQEEEIKHLEETNENiqrQM 1358
Cdd:TIGR02168 903 LRELESKRSELRREL--EELREKLAQLELRLEGLEVRIDNLQERLSEEYS----------LTLEEAEALENKIED---DE 967
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564397520 1359 AQLQEELEKQRRSTEELEVVNSRN-SEIEELKAIIEHLQENQEQLQKAKaeeiEQLHEVIEKLQSE 1423
Cdd:TIGR02168 968 EEARRRLKRLENKIKELGPVNLAAiEEYEELKERYDFLTAQKEDLTEAK----ETLEEAIEEIDRE 1029
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
120-587 |
7.16e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.97 E-value: 7.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 120 LELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQHAREKEEmaLRNEQE 199
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE--LEEAEE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 200 TAELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKELSAkhQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVS 279
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA--AAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 280 LKNLEAQHQAAIRKLQEDLRSEhcQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEIRHLWSQLEsMKTNREEQ 359
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEE--AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE-AEADYEGF 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 360 NGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLRVYFEKKLNDAEKtyqedLTVFQQRLQEAREESLESAE 439
Cdd:COG1196 507 LEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAA-----AIEYLKAAKAGRATFLPLDK 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 440 ISSSCMFPEETSGRERKEPPDPLDLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDlkRDAEEKL 519
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE--GEGGSAG 659
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564397520 520 ASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLL 587
Cdd:COG1196 660 GSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1080-1420 |
8.69e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 71.25 E-value: 8.69e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1080 EEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQlivELEDLRKQLQQASREL 1159
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKE---RLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1160 LTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQS----EKDRATLLSQMRVLESELEDQlvqHRGCAQ 1235
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAElsklEEEVSRIEARLREIEQKLNRL---TLEKEY 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1236 LAEEVTTLKQQLATLDkhlrSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQAtrprppgprDSQCAKLDEEVELLQEK 1315
Cdd:TIGR02169 831 LEKEIQELQEQRIDLK----EQIKSIEKEIENLNGKKEELEEELEELEAALRDL---------ESRLGDLKKERDELEAQ 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1316 LREKLDGFNELVIKKDLADQQLL-------IQEEEIKHLEETNENIQRQMA------QLQEELEKQRRSTEELEVVNsrN 1382
Cdd:TIGR02169 898 LRELERKIEELEAQIEKKRKRLSelkakleALEEELSEIEDPKGEDEEIPEeelsleDVQAELQRVEEEIRALEPVN--M 975
|
330 340 350
....*....|....*....|....*....|....*...
gi 564397520 1383 SEIEELKAIIEHLQENQEQLQKAKAEEiEQLHEVIEKL 1420
Cdd:TIGR02169 976 LAIQEYEEVLKRLDELKEKRAKLEEER-KAILERIEEY 1012
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
144-716 |
2.16e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 2.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 144 LQKEKETAL--TELREMLNGRRAQELALLQSRQQCELELMREQHAREKEEMAlRNEQETAELKEKFRSEMEKTVQMMETL 221
Cdd:COG1196 205 LERQAEKAEryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELE-ELEAELAELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 222 KQDWESERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIRKLQEDLRSE 301
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 302 HCQYLQDLELRFREKEKAKELELETLQAsyEDLKAQSQEEIRHLWSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRS 381
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLEA--LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 382 DFAQQQQQERAQHESELEHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISSSCMFPEETSGRERKEPPDP 461
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 462 LDLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKRDAEEKLASMFLELREKAESEKLSIINRF 541
Cdd:COG1196 522 LAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 542 ELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLLCSQCGKEpsVAQDEKSAILLREKEDCALQLLTAQ 621
Cdd:COG1196 602 DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE--GGSAGGSLTGGSRRELLAALLEAEA 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 622 NRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQLASLESKQQALLETHVAK 701
Cdd:COG1196 680 ELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEP 759
|
570
....*....|....*.
gi 564397520 702 MQV-KHDAEISALEKR 716
Cdd:COG1196 760 PDLeELERELERLERE 775
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
154-858 |
2.60e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.17 E-value: 2.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 154 ELREMLNGRRAQELALLQSRQQCElELMREQHAREKEEMalRNEQETAELKEKFRSEMEKTVQMMETLKQDWESERELCL 233
Cdd:PTZ00121 1138 DARKAEEARKAEDAKRVEIARKAE-DARKAEEARKAEDA--KKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKA 1214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 234 ETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAI-----RKLQEDLRSEHCQYLQD 308
Cdd:PTZ00121 1215 EEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIkaeeaRKADELKKAEEKKKADE 1294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 309 LElRFREKEKAKELELETLQASYEDLKAQSQEEIRhlwSQLESMKTNREEQNGSWEPLLAQAShleelqhlrsdfAQQQQ 388
Cdd:PTZ00121 1295 AK-KAEEKKKADEAKKKAEEAKKADEAKKKAEEAK---KKADAAKKKAEEAKKAAEAAKAEAE------------AAADE 1358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 389 QERAQHESELEHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISSScmfpeetsgRERKEPPDPLDLQLEQ 468
Cdd:PTZ00121 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA---------AAAKKKADEAKKKAEE 1429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 469 PKAQGSLIEDYQEKLSNAEEKI---ELMKQEFQKKEAEWELSREDLKRDAEEKLASMflELREKAES--EKLSIINRFEL 543
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKADEAKKkaeEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD--EAKKKAEEakKKADEAKKAAE 1507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 544 RESSMRHLQDQQAAQISDLERSLREQQG--HLRQLEQELTRDEVLLCSQCGKEPSVAQDEKSAillREKEDCALQLltaq 621
Cdd:PTZ00121 1508 AKKKADEAKKAEEAKKADEAKKAEEAKKadEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK---KAEEDKNMAL---- 1580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 622 nRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQLAslESKQQAllethvak 701
Cdd:PTZ00121 1581 -RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA--EEKKKA-------- 1649
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 702 MQVKHDAEISALEKRHLSNLDELESCYVADIQTIRDEHKKALELLRAELEEqlQKKDSCHREILTQELEKL-KLKHAEEL 780
Cdd:PTZ00121 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE--AKKAEELKKKEAEEKKKAeELKKAEEE 1727
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564397520 781 qsvrNSLRVKMSAQHTESGKGPAADLQGAHQQKAPAMALHNEGHQLEEDGDAALGGADTEDLQHHAEPREREGPHTVE 858
Cdd:PTZ00121 1728 ----NKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1121-1424 |
6.89e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 6.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1121 KVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEEnsvlWNQKETFTNEAKEREAALQKEVESLTRDQWE 1200
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE----LEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1201 SRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIK 1280
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLER 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1281 WLEGQLRQATRprppgpRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQ 1360
Cdd:TIGR02168 832 RIAATERRLED------LEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564397520 1361 LQEELEKQRRSTEEL-EVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSEL 1424
Cdd:TIGR02168 906 LESKRSELRRELEELrEKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEA 970
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2105-2405 |
1.02e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 1.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2105 LLAEIQALRAQLRMTHLqnqEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQekciandLQKTLSKEQEAASDVR 2184
Cdd:COG1196 218 LKEELKELEAELLLLKL---RELEAELEELEAELEELEAELEELEAELAELEAELEE-------LRLELEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2185 KRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEVLRLRAVLDGKENELKVVLEELECERGKGQVLQAQQEEQQLRH 2264
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2265 LQREGQSSRALEELKISLEKQLAQNNQLCVALKHERaakdNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLE 2344
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLE----ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564397520 2345 LSEALQ-HERLLTEQLSRNAQEACARQDTQAQHALLRKLKAEKARALELEAMLEKVQKQAAH 2405
Cdd:COG1196 444 LEEAAEeEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG 505
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1059-1546 |
1.15e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 1.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1059 KQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESE 1138
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1139 QQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQwESRKQSEKDRATLLSQMRV 1218
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE-EELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1219 LESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRprppgpr 1298
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE------- 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1299 dsQCAKLDEEVELLQEKLREKLDgfNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQ---EELEKQRRSTEEL 1375
Cdd:COG1196 471 --EAALLEAALAELLEELAEAAA--RLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveAAYEAALEAALAA 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1376 EVVNSRNSEIEELKAIIEHLQENQ---------EQLQKAKAEEIEQLHEVIEKLQSELSLMGPTVHEMSDLPPGSLHTEL 1446
Cdd:COG1196 547 ALQNIVVEDDEVAAAAIEYLKAAKagratflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRT 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1447 SCLQAEGMGGQAL------HNELQAAQAAKGAFGQLLADHGHSQALEALQERLQDAEAAAARHLTELEHCVALRQAEVEA 1520
Cdd:COG1196 627 LVAARLEAALRRAvtlagrLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE 706
|
490 500
....*....|....*....|....*.
gi 564397520 1521 MASRIQEFEATLKAKEAIIVQRDLEI 1546
Cdd:COG1196 707 RELAEAEEERLEEELEEEALEEQLEA 732
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1041-1553 |
1.53e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 1.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1041 QSLSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGF 1120
Cdd:COG1196 263 AELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1121 KVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQwE 1200
Cdd:COG1196 343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE-E 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1201 SRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIK 1280
Cdd:COG1196 422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1281 WLEGQLRQATRPR--PPGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQM 1358
Cdd:COG1196 502 DYEGFLEGVKAALllAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDK 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1359 AQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQ--EQLQKAKAEEIEQLHEVIEKLQSELSLmgptvhEMSD 1436
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLlgRTLVAARLEAALRRAVTLAGRLREVTL------EGEG 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1437 LPPGSLHTElscLQAEGMGGQALHNELQAAQAAKGAFGQLLADHGHSQALEALQERLQDAEAAAARHLTELEhcvALRQA 1516
Cdd:COG1196 656 GSAGGSLTG---GSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE---ALEEQ 729
|
490 500 510
....*....|....*....|....*....|....*..
gi 564397520 1517 EVEAMASRIQEFEATLKAKEAIIVQRDLEIDAVNKWK 1553
Cdd:COG1196 730 LEAEREELLEELLEEEELLEEEALEELPEPPDLEELE 766
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1059-1690 |
1.53e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 1.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1059 KQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESE 1138
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1139 QQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKEtftnEAKEREAALQKEVESLTRDQWE-SRKQSEKDRATLLSQMR 1217
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIE----RLEARLERLEDRRERLQQEIEElLKKLEEAELKELQAELE 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1218 VLESELEDQLVQHRGC-----------AQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEF--QQEIKWLEG 1284
Cdd:TIGR02168 444 ELEEELEELQEELERLeealeelreelEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLknQSGLSGILG 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1285 QLRQATRPRP----------PGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETN--- 1351
Cdd:TIGR02168 524 VLSELISVDEgyeaaieaalGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFlgv 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1352 -------------------------ENIQRQMAQLQEELEKQRRSTEELEVVN-----------------SRNSEIEELK 1389
Cdd:TIGR02168 604 akdlvkfdpklrkalsyllggvlvvDDLDNALELAKKLRPGYRIVTLDGDLVRpggvitggsaktnssilERRREIEELE 683
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1390 AIIEHLQENQEQLQKA---KAEEIEQLHEVIEKLQSELSLMGPTVHEMSDLPPGSLHTELSCL----QAEGMGGQALHNE 1462
Cdd:TIGR02168 684 EKIEELEEKIAELEKAlaeLRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEeriaQLSKELTELEAEI 763
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1463 LQAAQAAKGAFGQLLADHGHSQALEALQERLQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQR 1542
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL 843
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1543 DLEIDAVNK--WKVSHSVELEALLLALAHFQHAVEQQTSATPDEPPK-----LQQLLVQCARLSHQLHVLYRRFLRCQVE 1615
Cdd:TIGR02168 844 EEQIEELSEdiESLAAEIEELEELIEELESELEALLNERASLEEALAllrseLEELSEELRELESKRSELRRELEELREK 923
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564397520 1616 LGQHQPRVasvgcadppAEAQGKRDGELEQdgvssglALAPHSLVAQAKEEQPEDCHLGNTSLRAQLRQLEEKLD 1690
Cdd:TIGR02168 924 LAQLELRL---------EGLEVRIDNLQER-------LSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
135-648 |
2.89e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.24 E-value: 2.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 135 AQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQHAREKEEMALRNEQ---ETAELKEKF---- 207
Cdd:PTZ00121 1263 AHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEakkKADAAKKKAeeak 1342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 208 ------RSEMEKTVQMMETLKQDWESERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQK----------AELEKIFQ 271
Cdd:PTZ00121 1343 kaaeaaKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKkkadelkkaaAAKKKADE 1422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 272 AKHEAEVSLKNLEAQHQAAIRKLQEDLR--SEHCQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEIRHLWSQL 349
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKkkAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA 1502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 350 ---ESMKTNREEQNGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLRVYFEKKLNDAEKTYQEDLTVFQQR 426
Cdd:PTZ00121 1503 kkaAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 427 LQEAREESLESAEISSSCMFPEETSGRERKEPPDPLDLQLEQ-PKAQGSLIEDYQEKLSNAEEKIElmKQEFQKKEAEWE 505
Cdd:PTZ00121 1583 AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEElKKAEEEKKKVEQLKKKEAEEKKK--AEELKKAEEENK 1660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 506 LSREDLKR-DAEEKLASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDE 584
Cdd:PTZ00121 1661 IKAAEEAKkAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564397520 585 VLlcSQCGKEPSVAQDEKSAI--LLREKEDCALQLLTAQNRFLEER-KEIMEKFAKEQDAFLLDTQE 648
Cdd:PTZ00121 1741 ED--KKKAEEAKKDEEEKKKIahLKKEEEKKAEEIRKEKEAVIEEElDEEDEKRRMEVDKKIKDIFD 1805
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
870-1429 |
3.59e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 3.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 870 QELQASQDQGAQVRDQVFLLSRELEECRGELEQLQQRRERENQEGATLicmlRADVDLAQSEGKALRDALRRLLDLFGET 949
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA----QAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 950 LKAAVTLKSRISERAGLLLDHEDAVDTSGAQLAAAALGEMWPDEGLLDIDRTLPEgaetssvceisshvcesffmspent 1029
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE------------------------- 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1030 qeceqpIRKVYQSLSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALE 1109
Cdd:COG1196 370 ------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1110 LHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQK 1189
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1190 EVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTL------KQQLATLDKHLRSQRQFMDE 1263
Cdd:COG1196 524 GAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLpldkirARAALAAALARGAIGAAVDL 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1264 QAAEREHEREEFQQEIKWLEGQLRQATRPRPPGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEE 1343
Cdd:COG1196 604 VASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1344 IKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEE------------IE 1411
Cdd:COG1196 684 LAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEeealeelpeppdLE 763
|
570
....*....|....*...
gi 564397520 1412 QLHEVIEKLQSELSLMGP 1429
Cdd:COG1196 764 ELERELERLEREIEALGP 781
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1147-1495 |
3.88e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 3.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1147 DLRKQLQQASRELLTLKeensvlWNQKETFTNEAKEREAALQKEVESLTRDQwesrKQSEKDRATLLSQMRVLESELEDQ 1226
Cdd:TIGR02168 217 ELKAELRELELALLVLR------LEELREELEELQEELKEAEEELEELTAEL----QELEEKLEELRLEVSELEEEIEEL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1227 lvQHRgCAQLAEEVTTLKQQLATLD---KHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATrprppGPRDSQCA 1303
Cdd:TIGR02168 287 --QKE-LYALANEISRLEQQKQILRerlANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK-----EELESLEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1304 KLDEEVELLQE---KLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNS 1380
Cdd:TIGR02168 359 ELEELEAELEElesRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKEL 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1381 RnSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSELSlmgptvhEMSDLppGSLHTELSCLQAEGMG-GQAL 1459
Cdd:TIGR02168 439 Q-AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER-------ELAQL--QARLDSLERLQENLEGfSEGV 508
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 564397520 1460 HNELQAAQAAKGAFGQLL----ADHGHSQALE-ALQERLQD 1495
Cdd:TIGR02168 509 KALLKNQSGLSGILGVLSelisVDEGYEAAIEaALGGRLQA 549
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
208-917 |
9.69e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 9.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 208 RSEMEKTVQMMETLKqdwESERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQH 287
Cdd:PTZ00121 1059 KAEAKAHVGQDEGLK---PSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARK 1135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 288 QAAIRKLQEDLRSEHCQYLQDLelrfREKEKAKELELetlqasyedlkAQSQEEIRHLWSQLESMKTNREEQngsweplL 367
Cdd:PTZ00121 1136 AEDARKAEEARKAEDAKRVEIA----RKAEDARKAEE-----------ARKAEDAKKAEAARKAEEVRKAEE-------L 1193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 368 AQASHLEELQHLRsdfaqqqqqeRAQHESELEHLRVYFEKKLNDAEKTYQEdltvFQQRLQEAREESLESAEISSSCMFP 447
Cdd:PTZ00121 1194 RKAEDARKAEAAR----------KAEEERKAEEARKAEDAKKAEAVKKAEE----AKKDAEEAKKAEEERNNEEIRKFEE 1259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 448 EETSGRERKEPPDPLDlqlEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKRDAEE--KLASmflE 525
Cdd:PTZ00121 1260 ARMAHFARRQAAIKAE---EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEakKKAD---A 1333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 526 LREKAE-SEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLLCSQCGKEPSVAQDEKSA 604
Cdd:PTZ00121 1334 AKKKAEeAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA 1413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 605 ILLREKEDcALQLLTAQNRFLEERKEIMEKfAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQL 684
Cdd:PTZ00121 1414 AAAKKKAD-EAKKKAEEKKKADEAKKKAEE-AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK 1491
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 685 ASlESKQQALLETHVAKMQVKHDAEISALEKRHLSNLDELESCYVADIQTIRDEHKKALELLRAELEEQLQKKDSCHREI 764
Cdd:PTZ00121 1492 AE-EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK 1570
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 765 LTQELEKLKLKHAEELQSVRNSLRVKMSAQHTESGKGPAADLQGAHQQKAPAMALHNEghQLEEDGDAALGGADTEDLQH 844
Cdd:PTZ00121 1571 KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA--EEEKKKVEQLKKKEAEEKKK 1648
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564397520 845 HAEPREREGPHTV----EMQTSQTELAKPQELQASQDQGAQVRDQvflLSRELEECRgELEQLQQRRERENQEGATL 917
Cdd:PTZ00121 1649 AEELKKAEEENKIkaaeEAKKAEEDKKKAEEAKKAEEDEKKAAEA---LKKEAEEAK-KAEELKKKEAEEKKKAEEL 1721
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1087-1425 |
5.45e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 5.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1087 QKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIV-ELEDLRKQLQQASRELLTLKEE 1165
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLkEKEALERQKEAIERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1166 nsvlwnqKETFTNEAKEREAALQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEdqlvqhrgcaQLAEEVTTLKQ 1245
Cdd:TIGR02169 253 -------LEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIA----------SLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1246 QLatldkhlrsqrQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRppgprdsqcAKLDEEVELLQEKLREKLDGFNE 1325
Cdd:TIGR02169 316 EL-----------EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR---------DKLTEEYAELKEELEDLRAELEE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1326 LVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEEL------------EVVNSRNSEIEELKAIIE 1393
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLnaaiagieakinELEEEKEDKALEIKKQEW 455
|
330 340 350
....*....|....*....|....*....|..
gi 564397520 1394 HLQENQEQLQKAKaEEIEQLHEVIEKLQSELS 1425
Cdd:TIGR02169 456 KLEQLAADLSKYE-QELYDLKEEYDRVEKELS 486
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
147-781 |
1.07e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.23 E-value: 1.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 147 EKETALTELREMLNGRRAQELALLQSRQQCELELMREQHAREKEEMALRNEQETAELKEKFRSEMEKTVQMMETLKQDWE 226
Cdd:PTZ00121 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEE 1288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 227 SERELCL---ETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEkifQAKHEAEVSLKNLEAQHQAAIRKLQEDLRSEhc 303
Cdd:PTZ00121 1289 KKKADEAkkaEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD---AAKKKAEEAKKAAEAAKAEAEAAADEAEAAE-- 1363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 304 qylqdlelrfrEKEKAKELELETLQASYEDLKAQSQEEirhlwSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRSDF 383
Cdd:PTZ00121 1364 -----------EKAEAAEKKKEEAKKKADAAKKKAEEK-----KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKA 1427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 384 AQQQQQERAQHESELehlrvyfEKKLNDAEKTYQEdltvfQQRLQEAREESLESAEISsscmfpEETSGRERKEPPDPLD 463
Cdd:PTZ00121 1428 EEKKKADEAKKKAEE-------AKKADEAKKKAEE-----AKKAEEAKKKAEEAKKAD------EAKKKAEEAKKADEAK 1489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 464 LQLEQPKAQGSLIEDYQEKLSNAEE--KIELMKQEFQKKEAEWELSREDLKRDAEEKLASmflELREKAESEKLSIINRF 541
Cdd:PTZ00121 1490 KKAEEAKKKADEAKKAAEAKKKADEakKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD---ELKKAEELKKAEEKKKA 1566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 542 E--LRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVllcsqcgkepSVAQDEK-SAILLREKEDCALQLL 618
Cdd:PTZ00121 1567 EeaKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA----------KKAEEAKiKAEELKKAEEEKKKVE 1636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 619 TAQNRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQLASLESKQQALLETH 698
Cdd:PTZ00121 1637 QLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 699 VAKmQVKHDAEISALEKRHLSNLDElESCYVADIQTIRDEHKKALELLRAELEEQLQKKDSCHREILTQELEKLKLKHAE 778
Cdd:PTZ00121 1717 KAE-ELKKAEEENKIKAEEAKKEAE-EDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM 1794
|
...
gi 564397520 779 ELQ 781
Cdd:PTZ00121 1795 EVD 1797
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
870-1420 |
1.27e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 1.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 870 QELQASQDQGAQVRDQVFLLSRELEECRGELEQLQQRRERENQEGATL---ICMLRADVDLAQSEGKALRDALRRLLDLF 946
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELeeeLAELEEELEELEEELEELEEELEEAEEEL 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 947 GETLKAAVTLKSRISERAGLLLDHEDAVDTSGAQLAAAALGEMWPDEGLLDIDRTLPEGAETSSVCEisshvcesffmsp 1026
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE------------- 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1027 ENTQECEQPIRKVYQSLSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRL 1106
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1107 ALELHTAEGLLEGFKVEKA-----DLQEALGKKEESEQQLIVEL-----EDLRKQLQQASRELLTLKEENSvlwnQKETF 1176
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLrglagAVAVLIGVEAAYEAALEAALaaalqNIVVEDDEVAAAAIEYLKAAKA----GRATF 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1177 TNEAKEREAALQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHR-GCAQLAEEVTTLKQQLATLDKHLR 1255
Cdd:COG1196 577 LPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARlEAALRRAVTLAGRLREVTLEGEGG 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1256 SQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPPGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQ 1335
Cdd:COG1196 657 SAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE 736
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1336 QLLIQEEEIKHLEETNENIQRQM---AQLQEELEKQRRSTEELEVVNSRnsEIEELKAIIEHLQENQEQLQKAKaEEIEQ 1412
Cdd:COG1196 737 LLEELLEEEELLEEEALEELPEPpdlEELERELERLEREIEALGPVNLL--AIEEYEELEERYDFLSEQREDLE-EARET 813
|
....*...
gi 564397520 1413 LHEVIEKL 1420
Cdd:COG1196 814 LEEAIEEI 821
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1060-1289 |
1.84e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 1.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1060 QLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQ 1139
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1140 QLIVELEDLRKQL---QQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLtrdqwESRKQSEKDRATLLSQM 1216
Cdd:TIGR02168 348 ELKEELESLEAELeelEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL-----EARLERLEDRRERLQQE 422
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564397520 1217 RvleSELEDQLVQHRgCAQLAEEVTTLKQQLATLDKHLRsqrqFMDEQAAEREHEREEFQQEIKWLEGQLRQA 1289
Cdd:TIGR02168 423 I---EELLKKLEEAE-LKELQAELEELEEELEELQEELE----RLEEALEELREELEEAEQALDAAERELAQL 487
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2281-2533 |
2.23e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 2.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2281 SLEKQLAQNNQLCVALKHERaakdnlqKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEAL----QHERLLT 2356
Cdd:TIGR02168 236 ELREELEELQEELKEAEEEL-------EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIsrleQQKQILR 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2357 EQLSRNAQEACARQDTQAQhaLLRKLKAEKARALELEAMLEKVQKQAAHTQQqleaqaqerclELRREKEVSGNLRSAVD 2436
Cdd:TIGR02168 309 ERLANLERQLEELEAQLEE--LESKLDELAEELAELEEKLEELKEELESLEA-----------ELEELEAELEELESRLE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2437 ALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKL----RELELQRQR 2512
Cdd:TIGR02168 376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELeeleEELEELQEE 455
|
250 260
....*....|....*....|.
gi 564397520 2513 DEHKIEQLQRLVRELRWKEEA 2533
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQA 476
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
136-543 |
2.74e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 2.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 136 QLELTQANLQKeKETALTELREMLNGRRAQELALLQSRqqcelELMREQHAREKEEMALRNEQETAELkEKFRSEMEKTV 215
Cdd:TIGR02168 180 KLERTRENLDR-LEDILNELERQLKSLERQAEKAERYK-----ELKAELRELELALLVLRLEELREEL-EELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 216 QMMETLkQDWESERELCLETLRKElsakhQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIRKLQ 295
Cdd:TIGR02168 253 EELEEL-TAELQELEEKLEELRLE-----VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 296 EDLRSEHCQylqdlelrfREKEKAKELELETLQASYEDLKAQSQEEIRhlwsQLESMKTNREEQNgswepllaqashlEE 375
Cdd:TIGR02168 327 ELESKLDEL---------AEELAELEEKLEELKEELESLEAELEELEA----ELEELESRLEELE-------------EQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 376 LQHLRSDFAqQQQQERAQHESELEHLrvyfEKKLNDAEKTYQEdltvfQQRLQEAREESLESAEIssscmfpeetsgrer 455
Cdd:TIGR02168 381 LETLRSKVA-QLELQIASLNNEIERL----EARLERLEDRRER-----LQQEIEELLKKLEEAEL--------------- 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 456 keppDPLDLQLEQPKAQgslIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKRDAEEK--LASMFLELREKAESE 533
Cdd:TIGR02168 436 ----KELQAELEELEEE---LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLdsLERLQENLEGFSEGV 508
|
410
....*....|
gi 564397520 534 KLSIINRFEL 543
Cdd:TIGR02168 509 KALLKNQSGL 518
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1059-1424 |
3.24e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.23 E-value: 3.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1059 KQLEDARQLHRCVEKEFrhrdEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESE 1138
Cdd:PRK03918 186 KRTENIEELIKEKEKEL----EEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1139 QQL---IVELEDLRKQLQQASRELLTLKEEnSVLWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEK--DRATLL 1213
Cdd:PRK03918 262 RELeerIEELKKEIEELEEKVKELKELKEK-AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEleEKEERL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1214 SQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLrsqrqfmdeqaaeREHEREEFQQEIKWLEgqlrqatrpr 1293
Cdd:PRK03918 341 EELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRL-------------TGLTPEKLEKELEELE---------- 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1294 ppgprdsqcaKLDEEVELLQEKLREKLDGFNELVIKKDLADQQL------------LIQEEEIKHLEETN----ENIQRQ 1357
Cdd:PRK03918 398 ----------KAKEEIEEEISKITARIGELKKEIKELKKAIEELkkakgkcpvcgrELTEEHRKELLEEYtaelKRIEKE 467
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564397520 1358 MAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSEL 1424
Cdd:PRK03918 468 LKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKL 534
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
138-471 |
6.90e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 6.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 138 ELTQANLQKEKEtaltELREMLNGRRAQELALLQSRQQCELELMREQHAREKEE--MALRNEQETAELKEKFRSEMEKTV 215
Cdd:PTZ00121 1526 EAKKAEEAKKAD----EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDknMALRKAEEAKKAEEARIEEVMKLY 1601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 216 QMMETLKQDW---ESERELCLETLRKELSAKHQSEmeglqnQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIR 292
Cdd:PTZ00121 1602 EEEKKMKAEEakkAEEAKIKAEELKKAEEEKKKVE------QLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 293 KLQEDLRSEHCQYLQDLELRFREKEKAKELELETLQASyEDLKAQS---QEEIRHLwsQLESMKTNREEQNGSWEPLLAQ 369
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE-EKKKAEElkkAEEENKI--KAEEAKKEAEEDKKKAEEAKKD 1752
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 370 ASHLEELQHLRSDFAQQQQQERAQHESEL-EHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEissscmfPE 448
Cdd:PTZ00121 1753 EEEKKKIAHLKKEEEKKAEEIRKEKEAVIeEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVIND-------SK 1825
|
330 340
....*....|....*....|...
gi 564397520 449 ETSGRERKEPPDPLDLQLEQPKA 471
Cdd:PTZ00121 1826 EMEDSAIKEVADSKNMQLEEADA 1848
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1040-1376 |
6.91e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 6.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1040 YQSLSTAVEGL-LDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRlalELHTAEGLLE 1118
Cdd:TIGR02168 215 YKELKAELRELeLALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEE---EIEELQKELY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1119 GFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEEnsvlwnqketfTNEAKEREAALQKEVESLtrdq 1198
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE-----------LAELEEKLEELKEELESL---- 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1199 wesrkqsEKDRATLLSQMRVLESELEDQLVQHRgcaQLAEEVTTLKQQLATldkhLRSQRQFMDEQAAEREHEREEFQQE 1278
Cdd:TIGR02168 357 -------EAELEELEAELEELESRLEELEEQLE---TLRSKVAQLELQIAS----LNNEIERLEARLERLEDRRERLQQE 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1279 IKWLEGQLRQAtrprppgprdsqcakldeEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQM 1358
Cdd:TIGR02168 423 IEELLKKLEEA------------------ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAEREL 484
|
330
....*....|....*...
gi 564397520 1359 AQLQEELEKQRRSTEELE 1376
Cdd:TIGR02168 485 AQLQARLDSLERLQENLE 502
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1056-1394 |
7.96e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 7.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1056 DSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQ-KQQELLERLREESAAKDRLALELHTAEgllEGFKVEKADLQEALGKK 1134
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKKAEEKKKADELKKAEElKKAEEKKKAEEAKKAEEDKNMALRKAE---EAKKAEEARIEEVMKLY 1601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1135 EESEQqliVELEDLRKQLQQASR--ELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEKDRatl 1212
Cdd:PTZ00121 1602 EEEKK---MKAEEAKKAEEAKIKaeELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK--- 1675
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1213 lsQMRVLESELEDQLVQHRGCAQLAEEvttlKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRP 1292
Cdd:PTZ00121 1676 --KAEEAKKAEEDEKKAAEALKKEAEE----AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA 1749
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1293 RPPGPRDSQCAKLDEEVELLQEKLR-EKLDGFNELVIKKDlaDQQLLIQEEEIKHLEETNENIQR--QMAQLQEELEKQR 1369
Cdd:PTZ00121 1750 KKDEEEKKKIAHLKKEEEKKAEEIRkEKEAVIEEELDEED--EKRRMEVDKKIKDIFDNFANIIEggKEGNLVINDSKEM 1827
|
330 340
....*....|....*....|....*
gi 564397520 1370 RSTEELEVVNSRNSEIEELKAIIEH 1394
Cdd:PTZ00121 1828 EDSAIKEVADSKNMQLEEADAFEKH 1852
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2076-2533 |
8.81e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 8.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2076 LVKKLEKVIQEQGDLQKVREHAclpDRSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELL 2155
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKKAEEA---KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2156 AYKVEQEKCIANDLQKTLSKEQEA------ASDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEV-----LR 2224
Cdd:PTZ00121 1397 KKKAEEDKKKADELKKAAAAKKKAdeakkkAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAkkadeAK 1476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2225 LRAVLDGKENELKVVLEElecERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNnqlcvALKHERAAKD 2304
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEE---AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE-----AKKAEEKKKA 1548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2305 NLQKELQiEASRCEALLAQEKGQLSELRKSL---EAERSRSLELSEALQHERLLTEQLSRNAQEACARQDTQAQHALLRK 2381
Cdd:PTZ00121 1549 DELKKAE-ELKKAEEKKKAEEAKKAEEDKNMalrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK 1627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2382 LKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAVDALQTHKQELGCCLEREREKAAWLQA 2461
Cdd:PTZ00121 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEEL 1707
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564397520 2462 ELEQLSARVKQQEARQDEK----RMDRRSSREDLDKRKwqrvKEKLRELELQRQRDEHKIEQLQRLVRELRWKEEA 2533
Cdd:PTZ00121 1708 KKKEAEEKKKAEELKKAEEenkiKAEEAKKEAEEDKKK----AEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEA 1779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
158-495 |
9.85e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 9.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 158 MLNGRRAQELALLQSRQQcelELmrEQHAREKEEMALRNEQETAELKEKfRSEMEKTVQMMETLKQDWES-ERELCLETL 236
Cdd:TIGR02168 660 VITGGSAKTNSSILERRR---EI--EELEEKIEELEEKIAELEKALAEL-RKELEELEEELEQLRKELEElSRQISALRK 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 237 RKELSAKHQSEMEGLQNQFQKELSEQKAE-------LEKIFQAKHEAEVSLKNLEA---QHQAAIRKLQEDLRSEHCQY- 305
Cdd:TIGR02168 734 DLARLEAEVEQLEERIAQLSKELTELEAEieeleerLEEAEEELAEAEAEIEELEAqieQLKEELKALREALDELRAELt 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 306 -LQDLELRFREKEKAKELELETLQASYEDLKAQS---QEEIRHLWSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRS 381
Cdd:TIGR02168 814 lLNEEAANLRERLESLERRIAATERRLEDLEEQIeelSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 382 DFAQQQQQERAQHESELEHLRVYFEkKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISsscmfPEETSGRERKEPPDP 461
Cdd:TIGR02168 894 SELEELSEELRELESKRSELRRELE-ELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT-----LEEAEALENKIEDDE 967
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 564397520 462 LDLQLEQPKAQGSL----------IEDYQEKlsnAEEKIELMKQ 495
Cdd:TIGR02168 968 EEARRRLKRLENKIkelgpvnlaaIEEYEEL---KERYDFLTAQ 1008
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
119-579 |
1.32e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 54.46 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 119 SLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQeLALLQSRQQCELELMREQHAREKEEMALRNEQ 198
Cdd:pfam12128 252 TLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQ-WKEKRDELNGELSAADAAVAKDRSELEALEDQ 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 199 ETAELKEkfrsEMEKTVQMMETLKQdWESERELcLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEV 278
Cdd:pfam12128 331 HGAFLDA----DIETAAADQEQLPS-WQSELEN-LEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIRE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 279 SLKNLEAQHQAAIRKLQEDLRSEHCQYLQDL-ELRFREKEKAKELELETLQASY-EDLK---AQSQEEIRHLWSQLESMK 353
Cdd:pfam12128 405 ARDRQLAVAEDDLQALESELREQLEAGKLEFnEEEYRLKSRLGELKLRLNQATAtPELLlqlENFDERIERAREEQEAAN 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 354 TNREeqngSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLrvyfekkLNDAEKTYQEDLTVFQQRLQEAREE 433
Cdd:pfam12128 485 AEVE----RLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQ-------LFPQAGTLLHFLRKEAPDWEQSIGK 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 434 SLESAEISSSCMFPEETSGR--------------ERKEPPDPLDL--QLEQPKAQ-GSLIEDYQEKLSNAEEKIELMKQE 496
Cdd:pfam12128 554 VISPELLHRTDLDPEVWDGSvggelnlygvkldlKRIDVPEWAASeeELRERLDKaEEALQSAREKQAAAEEQLVQANGE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 497 FQKKEAEWELSREDLKrDAEEKLASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQL 576
Cdd:pfam12128 634 LEKASREETFARTALK-NARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREA 712
|
...
gi 564397520 577 EQE 579
Cdd:pfam12128 713 RTE 715
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1059-1428 |
1.48e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.00 E-value: 1.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1059 KQLEDARQLHRCVEKEFRHRDEEMAQaVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKvEKADLQEALGKKEESE 1138
Cdd:COG4717 95 EELEELEEELEELEAELEELREELEK-LEKLLQLLPLYQELEALEAELAELPERLEELEERLE-ELRELEEELEELEAEL 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1139 QQLIVELEDLRKQLQQASR-ELLTLKEENSVLWNQKETFTNE---AKEREAALQKEVESLTRDQWESRKQSEKDRATLLS 1214
Cdd:COG4717 173 AELQEELEELLEQLSLATEeELQDLAEELEELQQRLAELEEEleeAQEELEELEEELEQLENELEAAALEERLKEARLLL 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1215 QMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDkHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRP 1294
Cdd:COG4717 253 LIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALL-FLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLP 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1295 PGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQ--RQMAQLQEELEKQRRST 1372
Cdd:COG4717 332 PDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEqaEEYQELKEELEELEEQL 411
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 564397520 1373 EELEVVNSRNSEIEELKAIIEHLQENQEQLQkAKAEEIEQLHEVIEKLQSELSLMG 1428
Cdd:COG4717 412 EELLGELEELLEALDEEELEEELEELEEELE-ELEEELEELREELAELEAELEQLE 466
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
257-639 |
1.95e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.53 E-value: 1.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 257 KELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIRKLQE------DLRSEhcqyLQDLELRFREKEKAKEL--ELETLQ 328
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEisselpELREE----LEKLEKEVKELEELKEEieELEKEL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 329 ASYEDLKAQSQEEIRHLWSQLESMKTNREEqngswepLLAQASHLEELQhlrsdfaqqqqqERAQHESELEHLRVYFEKK 408
Cdd:PRK03918 248 ESLEGSKRKLEEKIRELEERIEELKKEIEE-------LEEKVKELKELK------------EKAEEYIKLSEFYEEYLDE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 409 LNDAEKT---YQEDLTVFQQRLQEAREESLESAEISSscmfpEETSGRERKEPPDPLDLQLEQPKAQGSLIEDYQEKLSN 485
Cdd:PRK03918 309 LREIEKRlsrLEEEINGIEERIKELEEKEERLEELKK-----KLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTG 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 486 AE-EKIELMKQEFQKKEAEWElsredlkrDAEEKLASMFLELREKAESEKLSIIN-----------RFELRESSMRHLQD 553
Cdd:PRK03918 384 LTpEKLEKELEELEKAKEEIE--------EEISKITARIGELKKEIKELKKAIEElkkakgkcpvcGRELTEEHRKELLE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 554 QQAAQISDLERSLREQQGHLRQLEQELTRDEVLLcsqcGKEPSVAQDEKSAILLREKED----CALQLLTAQNRFLEERK 629
Cdd:PRK03918 456 EYTAELKRIEKELKEIEEKERKLRKELRELEKVL----KKESELIKLKELAEQLKELEEklkkYNLEELEKKAEEYEKLK 531
|
410
....*....|
gi 564397520 630 EIMEKFAKEQ 639
Cdd:PRK03918 532 EKLIKLKGEI 541
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1062-1415 |
2.01e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.51 E-value: 2.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1062 EDARQLHRCVEKEFRHRdEEMAQAVQKQQELLERLREE-SAAKDRLALELHTAEGLlegfkvekADLQEALGKKEESEQQ 1140
Cdd:PRK02224 258 AEIEDLRETIAETERER-EELAEEVRDLRERLEELEEErDDLLAEAGLDDADAEAV--------EARREELEDRDEELRD 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1141 livELEDLRKQLQQASRELLTLKEENSVLwnqkETFTNEAKEREAALQKEVESlTRDQWESRkqsEKDRATLLSQMRVLE 1220
Cdd:PRK02224 329 ---RLEECRVAAQAHNEEAESLREDADDL----EERAEELREEAAELESELEE-AREAVEDR---REEIEELEEEIEELR 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1221 SELEDQLVQHRGCA----QLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREH-----------------EREEFQQEI 1279
Cdd:PRK02224 398 ERFGDAPVDLGNAEdfleELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpvegsphveTIEEDRERV 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1280 KWLEGQLRQAtrprppgprDSQCAKLDEEVELLqEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMA 1359
Cdd:PRK02224 478 EELEAELEDL---------EEEVEEVEERLERA-EDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAA 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1360 QLQEELEKQRRSTEE----------------------------LEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIE 1411
Cdd:PRK02224 548 ELEAEAEEKREAAAEaeeeaeeareevaelnsklaelkeriesLERIRTLLAAIADAEDEIERLREKREALAELNDERRE 627
|
....
gi 564397520 1412 QLHE 1415
Cdd:PRK02224 628 RLAE 631
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
123-790 |
2.80e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.44 E-value: 2.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 123 EALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQE----LALLQSRQQCELELMREQHAREKEEMALR--- 195
Cdd:pfam02463 181 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEyllyLDYLKLNEERIDLLQELLRDEQEEIESSKqei 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 196 -NEQETAELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKELSAKH--QSEMEGLQNQFQKELSEQKAELEKIFQA 272
Cdd:pfam02463 261 eKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVddEEKLKESEKEKKKAEKELKKEKEEIEEL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 273 KHEAEVSLKNLEA-----QHQAAIRKLQEDLRSEHCQYLQDLELRFREKEKAKELELEtlqasYEDLKAQSQEEIRHLWS 347
Cdd:pfam02463 341 EKELKELEIKREAeeeeeEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE-----LKSEEEKEAQLLLELAR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 348 QLESMKTNREEQngswepllaQASHLEELQHLRsDFAQQQQQERAQHESELEHLRVYFEKKLNDAEKTYQEDLTVFQQRL 427
Cdd:pfam02463 416 QLEDLLKEEKKE---------ELEILEEEEESI-ELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQ 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 428 QEAREESLESAEISSSCMFPEETSGRERKEPPDPLDLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELS 507
Cdd:pfam02463 486 LELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQK 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 508 REDLKRDAEEKLASMFLELREKAESEKLSIINRFELRessMRHLQDQQAAQISDLERSLR-EQQGHLRQLEQELTRDEVL 586
Cdd:pfam02463 566 LVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPI---LNLAQLDKATLEADEDDKRAkVVEGILKDTELTKLKESAK 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 587 LCSQCGKEPSVAQDEKSAILLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDAflldtQEKHSHELQLLQQGHQQQLL 666
Cdd:pfam02463 643 AKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRR-----QLEIKKKEQREKEELKKLKL 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 667 ALRMELETKHHSELTEQLASLESKQQALLETHVAKMQVKHDAEISALEKRHLSNLDELESCYVADIQTIRDEHKKALELL 746
Cdd:pfam02463 718 EAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLK 797
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 564397520 747 RAELEEQLQKKDSCHREILTQELEKLKLKHAEELQSVRNSLRVK 790
Cdd:pfam02463 798 AQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALE 841
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
324-1165 |
2.85e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 2.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 324 LETLQASYEDLKAQS---------QEEIRHLwsQLESMKTNREEQNGSWEPLLAQashLEELQHLRSDFAQQQQQERAQH 394
Cdd:TIGR02168 195 LNELERQLKSLERQAekaerykelKAELREL--ELALLVLRLEELREELEELQEE---LKEAEEELEELTAELQELEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 395 EsELEHLRVYFEKKLNDAEKTYQE------DLTVFQQRLQEAREESLESAEissscmfpeetsgrerkeppdPLDLQLEQ 468
Cdd:TIGR02168 270 E-ELRLEVSELEEEIEELQKELYAlaneisRLEQQKQILRERLANLERQLE---------------------ELEAQLEE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 469 PKAQgslIEDYQEKLSNAEEKIELMKQEFQKKEAEWElSREDLKRDAEEKLAsmflELREKAESEKLsiiNRFELRESsm 548
Cdd:TIGR02168 328 LESK---LDELAEELAELEEKLEELKEELESLEAELE-ELEAELEELESRLE----ELEEQLETLRS---KVAQLELQ-- 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 549 rhlQDQQAAQISDLERSLREQQGHLRQLEQELtrdevllcSQCGKEPSVAQDEKSAILLREKEDCALQLLTAQNRFLEER 628
Cdd:TIGR02168 395 ---IASLNNEIERLEARLERLEDRRERLQQEI--------EELLKKLEEAELKELQAELEELEEELEELQEELERLEEAL 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 629 KEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQllalrmeletkHHSELTEQLASLESKQQALLETH-VAKMQVKHD 707
Cdd:TIGR02168 464 EELREELEEAEQALDAAERELAQLQARLDSLERLQE-----------NLEGFSEGVKALLKNQSGLSGILgVLSELISVD 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 708 AEIS-----ALEKRHLSNLDELESCYVADIQTIRdEHKKALELLRAELEEQLQKKDSCHREILTQELEKLKLkhAEELQS 782
Cdd:TIGR02168 533 EGYEaaieaALGGRLQAVVVENLNAAKKAIAFLK-QNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGV--AKDLVK 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 783 VRNSLRVKMSAqhTESGKGPAADLQGAHQQKAPAMALHN----EGHQLEEDGDAALGGADTEDLQHHAEPREREGPHTVE 858
Cdd:TIGR02168 610 FDPKLRKALSY--LLGGVLVVDDLDNALELAKKLRPGYRivtlDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIE 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 859 MQTSQTELAKpQELQASQDQGAQVRDQVFLLSRELEECRGELEQLQQRRERENQEGATLicmlRADVDLAQSEGKALRDA 938
Cdd:TIGR02168 688 ELEEKIAELE-KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL----EERIAQLSKELTELEAE 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 939 LRRLLDLFGETLKAAVTLKSRISERAGLLLDHEDAVDTSGAQLAAAALgemwpdegllDIDRTLPEGAETSSVCEISSHV 1018
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA----------ELTLLNEEAANLRERLESLERR 832
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1019 CESFFMSPENTQECEQPIRKVYQSLSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLRE 1098
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE 912
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564397520 1099 ESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLR-KQLQQASRELLTLKEE 1165
Cdd:TIGR02168 913 LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIeDDEEEARRRLKRLENK 980
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
256-582 |
4.27e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 4.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 256 QKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIR--KLQEDLRSEHCQYLQDLELRFREKEKAKELELETLQASYED 333
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILNELERQLKSLERQAEKAERykELKAELRELELALLVLRLEELREELEELQEELKEAEEELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 334 LKAQ---SQEEIRHLWSQLESMKTNREEQNGSWEPLLAQASHLE-ELQHLRSDFA------QQQQQERAQHESELEHLrv 403
Cdd:TIGR02168 258 LTAElqeLEEKLEELRLEVSELEEEIEELQKELYALANEISRLEqQKQILRERLAnlerqlEELEAQLEELESKLDEL-- 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 404 yfEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISSSCMFPEETSGRERKEppdpldlqLEQPKAQGSLIedyQEKL 483
Cdd:TIGR02168 336 --AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK--------VAQLELQIASL---NNEI 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 484 SNAEEKIELMKQEFQKKEAEWELSREDLKRdAEEKLASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLE 563
Cdd:TIGR02168 403 ERLEARLERLEDRRERLQQEIEELLKKLEE-AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAE 481
|
330
....*....|....*....
gi 564397520 564 RSLREQQGHLRQLEQELTR 582
Cdd:TIGR02168 482 RELAQLQARLDSLERLQEN 500
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1074-1423 |
5.59e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 5.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1074 EFRHRDEEMAQAVQKQQELLERLREESAAKDrlALELHTAEGLLEgfKVEKADLQEALGKKEESEQQLivelEDLRKQLQ 1153
Cdd:PTZ00121 1422 EAKKKAEEKKKADEAKKKAEEAKKADEAKKK--AEEAKKAEEAKK--KAEEAKKADEAKKKAEEAKKA----DEAKKKAE 1493
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1154 QASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDqwESRKQSEKDRATLLSQMRVLESELEDQLVQHrgc 1233
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKAD--EAKKAEEKKKADELKKAEELKKAEEKKKAEE--- 1568
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1234 AQLAEEVTTLKQQLATLDKHLRSQRqfmdeqaaeREHEREEFQQEIKWLEGQLRQATRPRPPGPRDSQCAKLDEEVELLQ 1313
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEAR---------IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1314 EKLREKLDGFNELviKKdlADQQLLIQEEEIKHLEETNeniQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIE 1393
Cdd:PTZ00121 1640 KKEAEEKKKAEEL--KK--AEEENKIKAAEEAKKAEED---KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEA 1712
|
330 340 350
....*....|....*....|....*....|
gi 564397520 1394 HLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1423
Cdd:PTZ00121 1713 EEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1059-1424 |
6.86e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 6.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1059 KQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLA-----LELHTAEGLLEGFKVEKADLQEALGK 1133
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPvcgreLTEEHRKELLEEYTAELKRIEKELKE 470
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1134 KEESEQQLIVELEDLRKQLQQASR---------ELLTLKEENSVL----WNQKETFTNEAKEREAALQKEVESLTRDqWE 1200
Cdd:PRK03918 471 IEEKERKLRKELRELEKVLKKESEliklkelaeQLKELEEKLKKYnleeLEKKAEEYEKLKEKLIKLKGEIKSLKKE-LE 549
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1201 SRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEvttlkqqlaTLDKHLRSQRQFMDE--QAAEREHEREEFQQE 1278
Cdd:PRK03918 550 KLEELKKKLAELEKKLDELEEELAELLKELEELGFESVE---------ELEERLKELEPFYNEylELKDAEKELEREEKE 620
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1279 IKWLEGQLRQATRprppgprdsQCAKLDEEVELLQEKLREKLDGFNE-----LVIKKDLADQQLLIQEEEIKHLEETNEN 1353
Cdd:PRK03918 621 LKKLEEELDKAFE---------ELAETEKRLEELRKELEELEKKYSEeeyeeLREEYLELSRELAGLRAELEELEKRREE 691
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564397520 1354 IQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKaiiehlqenqEQLQKAKAEEIEQLHEVIEKLQSEL 1424
Cdd:PRK03918 692 IKKTLEKLKEELEEREKAKKELEKLEKALERVEELR----------EKVKKYKALLKERALSKVGEIASEI 752
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1052-1285 |
9.30e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 9.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1052 DMALDSSKQLEDARQLhrcvEKEFR--HRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKAdlQE 1129
Cdd:COG4913 215 EYMLEEPDTFEAADAL----VEHFDdlERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFA--QR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1130 ALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKEtftNEAKEREAALQKEVESLTRDqwesRKQSEKDR 1209
Cdd:COG4913 289 RLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIR---GNGGDRLEQLEREIERLERE----LEERERRR 361
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564397520 1210 ATLLSQMRVLESELEDQLvqhrgcAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEF---QQEIKWLEGQ 1285
Cdd:COG4913 362 ARLEALLAALGLPLPASA------EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELrelEAEIASLERR 434
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2215-2527 |
9.42e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 9.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2215 LDKVQQEVLRLRAVLDGKENELKVVLEELEcERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQLCV 2294
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELE-ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2295 ALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEALQherllteQLSRNAQEAcarqdTQA 2374
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT-------LLNEEAANL-----RER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2375 QHALLRKLKAEKARALELEAMLEKVQKQAAhTQQQLEAQAQERCLELRREKEVSGNLRS----AVDALQTHKQELGCCLE 2450
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIE-SLAAEIEELEELIEELESELEALLNERAsleeALALLRSELEELSEELR 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2451 REREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLD---KRKWQRVKEKLRELELQRQRDEHKIEQLQRLVREL 2527
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSeeySLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
121-361 |
9.74e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 9.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 121 ELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELallqSRQQCELELMREQHAREKEEMAL---RNE 197
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL----ERQLEELEAQLEELESKLDELAEelaELE 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 198 QETAELKEKFRS------EMEKTVQMMETLKQDWESErelcLETLRKELsAKHQSEMEGLQNQFQkELSEQKAELEKifQ 271
Cdd:TIGR02168 344 EKLEELKEELESleaeleELEAELEELESRLEELEEQ----LETLRSKV-AQLELQIASLNNEIE-RLEARLERLED--R 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 272 AKHEAEVSLKNLEAQHQAAIRKLQEDLrSEHCQYLQDLELRFREKEKAKELELETLQASYEDLKaQSQEEIRHLWSQLES 351
Cdd:TIGR02168 416 RERLQQEIEELLKKLEEAELKELQAEL-EELEEELEELQEELERLEEALEELREELEEAEQALD-AAERELAQLQARLDS 493
|
250
....*....|
gi 564397520 352 MKTNREEQNG 361
Cdd:TIGR02168 494 LERLQENLEG 503
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2107-2375 |
1.04e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2107 AEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREhQLR-------RQVELLAYKVEQEKCIANDLQKTLSKEQEA 2179
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELE-QLRkeleelsRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2180 ASDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEVLRLRAVLDGKENELKVVLEELEcERGKGQVLQAQQEE 2259
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA-NLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2260 QQLRHLQREGQSSRALEELKISLEKQLAQNNQLCVALKHERAAKDNLQKELqieasrcEALLAQEKGQLSELRKSLEAER 2339
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL-------EEALALLRSELEELSEELRELE 907
|
250 260 270
....*....|....*....|....*....|....*.
gi 564397520 2340 SRSLELSEALQHERLLTEQLSRNAQEACARQDTQAQ 2375
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
549-1421 |
1.15e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.13 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 549 RHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLLCSQCGKEPSVAQDEKSAI------LLREKEDCALQLLTAQN 622
Cdd:pfam02463 154 RRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALeyyqlkEKLELEEEYLLYLDYLK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 623 RFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQLASLESKQQALLETHVAKM 702
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 703 QVKhdaEISALEKRHLSNLDELESCYVADIQTIRDEHKKALELLRAELEEQLQKKDscHREILTQELEKLKLKHAEELQS 782
Cdd:pfam02463 314 EKL---KESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQE--KLEQLEEELLAKKKLESERLSS 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 783 VRNSLRVKMSAQHTESGKgpaADLQGAHQQKapamalhNEGHQLEEDGDAALGGADTEDLQHHAEPREREGPHTVEMQTS 862
Cdd:pfam02463 389 AAKLKEEELELKSEEEKE---AQLLLELARQ-------LEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQEL 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 863 qTELAKPQELQASQDQGAQVRDQVFLLSRELEECRGELEQLQQRRERENQEGATLI---------CMLRADVDLAQSEGK 933
Cdd:pfam02463 459 -KLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLalikdgvggRIISAHGRLGDLGVA 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 934 ALRDALRRLLDLFGETLKAAVTLKSRISERAGLLLDHEDAVDTSGAQLAAAALGEMWPDEGLLDIDRTLPEGAETSSVCE 1013
Cdd:pfam02463 538 VENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADE 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1014 ISSHVCESFFMSPENTQECEQPIRKVYQSLSTAV----EGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQ 1089
Cdd:pfam02463 618 DDKRAKVVEGILKDTELTKLKESAKAKESGLRKGvsleEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRR 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1090 QELLERlrEESAAKDRLALELHTAEGLLEGFKVEKADLQEalGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVL 1169
Cdd:pfam02463 698 QLEIKK--KEQREKEELKKLKLEAEELLADRVQEAQDKIN--EELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKE 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1170 WNQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLAT 1249
Cdd:pfam02463 774 KELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE 853
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1250 LDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATrprppgprdSQCAKLDEEVELLQEKLREKLDGFNELVIK 1329
Cdd:pfam02463 854 EELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEK---------EKEEKKELEEESQKLNLLEEKENEIEERIK 924
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1330 KDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEE 1409
Cdd:pfam02463 925 EEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEK 1004
|
890
....*....|..
gi 564397520 1410 IEQLHEVIEKLQ 1421
Cdd:pfam02463 1005 KKLIRAIIEETC 1016
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1031-1397 |
1.22e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.19 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1031 ECEQPIRKVYQSLSTA---VEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLA 1107
Cdd:PRK02224 325 ELRDRLEECRVAAQAHneeAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1108 LELHTAEGLLEGFKVEK-----------ADLQEALGKKEESEQQL----------------IVE-LEDLRKQLQQASREL 1159
Cdd:PRK02224 405 VDLGNAEDFLEELREERdelrereaeleATLRTARERVEEAEALLeagkcpecgqpvegspHVEtIEEDRERVEELEAEL 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1160 LTLKEENSVLWNQKETFTNEAK-EREAALQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLA- 1237
Cdd:PRK02224 485 EDLEEEVEEVEERLERAEDLVEaEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAe 564
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1238 -------EEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHereefqqeikwleGQLRQATRPRppgpRDSQCAKLDEEVE 1310
Cdd:PRK02224 565 eeaeearEEVAELNSKLAELKERIESLERIRTLLAAIADA-------------EDEIERLREK----REALAELNDERRE 627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1311 LLQEK------LREKLDG--FNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRN 1382
Cdd:PRK02224 628 RLAEKrerkreLEAEFDEarIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRV 707
|
410
....*....|....*
gi 564397520 1383 SEIEELKAIIEHLQE 1397
Cdd:PRK02224 708 EALEALYDEAEELES 722
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1071-1424 |
2.06e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.40 E-value: 2.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1071 VEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGK---KEESEQQLIVELED 1147
Cdd:TIGR04523 129 LEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKiknKLLKLELLLSNLKK 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1148 LRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESL--TRDQWESRKQSEKDRATLLSQMRVLESELED 1225
Cdd:TIGR04523 209 KIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLnqLKDEQNKIKKQLSEKQKELEQNNKKIKELEK 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1226 QLvqhrgcAQLAEEVTTLKQQ-LATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPP-----GPRD 1299
Cdd:TIGR04523 289 QL------NQLKSEISDLNNQkEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNsesenSEKQ 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1300 SQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEE-------EIKHLEETNENIQRQMAQLQEELEKQRRST 1372
Cdd:TIGR04523 363 RELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKlnqqkdeQIKKLQQEKELLEKEIERLKETIIKNNSEI 442
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 564397520 1373 EELE-VVNSRNSEIEELKAIIEHLQENQEQLQKakaeEIEQLHEVIEKLQSEL 1424
Cdd:TIGR04523 443 KDLTnQDSVKELIIKNLDNTRESLETQLKVLSR----SINKIKQNLEQKQKEL 491
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1045-1423 |
2.15e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.42 E-value: 2.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1045 TAVEGLLDMALDSSKQLEDarQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREE----SAAKDRLALELHTAEGLLEGF 1120
Cdd:PRK02224 176 LGVERVLSDQRGSLDQLKA--QIEEKEEKDLHERLNGLESELAELDEEIERYEEQreqaRETRDEADEVLEEHEERREEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1121 KVEKADLQEALGKKEESEQqlivELEDLRKQLQQASRELLTLKEENSVLWNQKETftnEAKEREAALQKevesltRDQWE 1200
Cdd:PRK02224 254 ETLEAEIEDLRETIAETER----EREELAEEVRDLRERLEELEEERDDLLAEAGL---DDADAEAVEAR------REELE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1201 SRKQSEKDRatlLSQMRVLESELEDQLVQHRGCA-QLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHereeFQQEI 1279
Cdd:PRK02224 321 DRDEELRDR---LEECRVAAQAHNEEAESLREDAdDLEERAEELREEAAELESELEEAREAVEDRREEIEE----LEEEI 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1280 KWLEGQLRQATRPRppgprdsqcakldEEVELLQEKLREKLDGFNELV---------IKKDLADQQLLIQE--------- 1341
Cdd:PRK02224 394 EELRERFGDAPVDL-------------GNAEDFLEELREERDELREREaeleatlrtARERVEEAEALLEAgkcpecgqp 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1342 -EEIKHLEETNENiQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQK----------AKAEEI 1410
Cdd:PRK02224 461 vEGSPHVETIEED-RERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEEliaerretieEKRERA 539
|
410
....*....|...
gi 564397520 1411 EQLHEVIEKLQSE 1423
Cdd:PRK02224 540 EELRERAAELEAE 552
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
178-965 |
2.79e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.12 E-value: 2.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 178 LELMREQHAREKEEMAlRNEQETAELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKElsakHQSEmEGLQNQFQK 257
Cdd:pfam15921 76 IERVLEEYSHQVKDLQ-RRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRE----SQSQ-EDLRNQLQN 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 258 ELseqkaelekifqakHEAEvslknleaqhqaAIRKLQEDLRSEHCQYLQDLelrfREKEKAKELELETLQASYEDLKAQ 337
Cdd:pfam15921 150 TV--------------HELE------------AAKCLKEDMLEDSNTQIEQL----RKMMLSHEGVLQEIRSILVDFEEA 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 338 SQEEIRhlwsQLESMKTNREEQNGSwepllAQASHLEELqhlrsdfaqqqqqeraqhESELEHL--RVY-FEKKLNDAEK 414
Cdd:pfam15921 200 SGKKIY----EHDSMSTMHFRSLGS-----AISKILREL------------------DTEISYLkgRIFpVEDQLEALKS 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 415 TYQEDLTVFQQRLQEAREESLESAEISSSCMFPEETSGRERKEP-PDPLDLQLEQPKAQGSLiedYQEKLSNAEEKIELM 493
Cdd:pfam15921 253 ESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSiQSQLEIIQEQARNQNSM---YMRQLSDLESTVSQL 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 494 KQEFQKKEAEWELSREDLkrdaEEKLASMFLELRE-KAESEKLSiinrfelRESSmrHLQDQQAAQISDL-----ERSLR 567
Cdd:pfam15921 330 RSELREAKRMYEDKIEEL----EKQLVLANSELTEaRTERDQFS-------QESG--NLDDQLQKLLADLhkrekELSLE 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 568 EQQG---------------HLRQ----LEQELTRDEVLLCSQCGKEPSVAQDEKSAILLREKEDCALQLLTAQnrfLEER 628
Cdd:pfam15921 397 KEQNkrlwdrdtgnsitidHLRRelddRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQ---LEST 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 629 KEIMEKFAKEQDAflldtqekhshelqllqqghqqqllaLRMELETKHHSeLTEQLASLESKQQALLETHVAKMQVKHDA 708
Cdd:pfam15921 474 KEMLRKVVEELTA--------------------------KKMTLESSERT-VSDLTASLQEKERAIEATNAEITKLRSRV 526
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 709 EISALEKRHLSNldelescyvadiqtiRDEHKKALELLRAELEEQLQKKDSChREILTQELEKLklkhaeelqsvrnslr 788
Cdd:pfam15921 527 DLKLQELQHLKN---------------EGDHLRNVQTECEALKLQMAEKDKV-IEILRQQIENM---------------- 574
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 789 vkmsaqhtesgkgpaADLQGAHQQKAPAMALhnEGHQLEED-GDAALGGADTEDLQHHAEPREREgphtVEMQTSQTELA 867
Cdd:pfam15921 575 ---------------TQLVGQHGRTAGAMQV--EKAQLEKEiNDRRLELQEFKILKDKKDAKIRE----LEARVSDLELE 633
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 868 KPQELQASQDQGAQVRD---QVFLLSRELEECRGELEQLQQRRE-------RENQEGATLICMLRADVDLAQSEGKALRD 937
Cdd:pfam15921 634 KVKLVNAGSERLRAVKDikqERDQLLNEVKTSRNELNSLSEDYEvlkrnfrNKSEEMETTTNKLKMQLKSAQSELEQTRN 713
|
810 820
....*....|....*....|....*...
gi 564397520 938 ALRRLLDLFGETLKAAVTLKSRISERAG 965
Cdd:pfam15921 714 TLKSMEGSDGHAMKVAMGMQKQITAKRG 741
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
120-829 |
3.00e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.97 E-value: 3.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 120 LELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLngrraQELALLQSRQQCELELMREQHAREKEEMALRNEQE 199
Cdd:TIGR00618 196 AELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREAL-----QQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 200 TAELKEKFRSEMEKtvqmmetlkqdwesERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVS 279
Cdd:TIGR00618 271 ELRAQEAVLEETQE--------------RINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQ 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 280 LKNLEAQHQAAIRKLQEDLRSEHCQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQeEIRHLWSQLESMKTNREEQ 359
Cdd:TIGR00618 337 QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQ-SLCKELDILQREQATIDTR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 360 NGSWEPL---LAQASHLEELQHLRSDFAQQQQQERAQHESELEHLRVYFEKKLNdaEKTYQEDlTVFQQRLQEAREESLE 436
Cdd:TIGR00618 416 TSAFRDLqgqLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLK--EREQQLQ-TKEQIHLQETRKKAVV 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 437 SAEISSSCMFPEETSGRERKEPPDPLDLQLEQPKAQGSL-IEDYQEKLSNAEEKIELMKQEFQKKEAEWElSREDLKRDA 515
Cdd:TIGR00618 493 LARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQrGEQTYAQLETSEEDVYHQLTSERKQRASLK-EQMQEIQQS 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 516 EEKLASMFLELREkaeseklsIINRFELRESSMRHLQDQQaaqiSDLERSLR-EQQGHLRQLEQELTRDEVLLC-SQCGK 593
Cdd:TIGR00618 572 FSILTQCDNRSKE--------DIPNLQNITVRLQDLTEKL----SEAEDMLAcEQHALLRKLQPEQDLQDVRLHlQQCSQ 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 594 EPSVAQDEKSAI---LLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDAFLLDTQE--KHSHELQLLQQGHQQQLLAL 668
Cdd:TIGR00618 640 ELALKLTALHALqltLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEmlAQCQTLLRELETHIEEYDRE 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 669 RMELETKHHSELTEQLASLESKQQALLE-THVAKMQVKHDAEISALEKRHLSNLDELESCYVADIQTIrdEHKKALELLR 747
Cdd:TIGR00618 720 FNEIENASSSLGSDLAAREDALNQSLKElMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEI--QFFNRLREED 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 748 AELEEQLQKKDSCHREILTQELEKLKLKHAEELQSVRNSLRVKMSAQHTEsgKGPAADLQGAHQQKAPAMALHNEGHQLE 827
Cdd:TIGR00618 798 THLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEI--THQLLKYEECSKQLAQLTQEQAKIIQLS 875
|
..
gi 564397520 828 ED 829
Cdd:TIGR00618 876 DK 877
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1058-1452 |
3.50e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.72 E-value: 3.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1058 SKQLEDARQLHRCVEKEFrhrdEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEES 1137
Cdd:pfam05483 390 SSELEEMTKFKNNKEVEL----EELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTS 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1138 EQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTrdqwESRKQSEKdratLLSQMR 1217
Cdd:pfam05483 466 EEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDII----NCKKQEER----MLKQIE 537
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1218 VLEseledqlvqhrgcaqlaEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQAtrprppgp 1297
Cdd:pfam05483 538 NLE-----------------EKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKIL-------- 592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1298 rDSQCAKLDEEVElLQEKLREKLDGFNELVIKKDLAD-QQLLIQEEEIKHLEETNENIQRQMAQL----QEELEKQRRST 1372
Cdd:pfam05483 593 -ENKCNNLKKQIE-NKNKNIEELHQENKALKKKGSAEnKQLNAYEIKVNKLELELASAKQKFEEIidnyQKEIEDKKISE 670
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1373 EELEvvnsrnSEIEELKAIIEHLQENQEQLQKAKAEEI-----------EQLHEVIEKLQSELSLMGPTVHEMSDLpPGS 1441
Cdd:pfam05483 671 EKLL------EEVEKAKAIADEAVKLQKEIDKRCQHKIaemvalmekhkHQYDKIIEERDSELGLYKNKEQEQSSA-KAA 743
|
410
....*....|.
gi 564397520 1442 LHTELSCLQAE 1452
Cdd:pfam05483 744 LEIELSNIKAE 754
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
234-534 |
3.80e-05 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 49.24 E-value: 3.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 234 ETLRKELSAKHQSEMEGLQNQFQKELSEQKaelekifqaKHEAEVSLKNLEAQHQAAIRKlQEDLRSEHCQYLQDLELRF 313
Cdd:NF033838 109 EKSEAELTSKTKKELDAAFEQFKKDTLEPG---------KKVAEATKKVEEAEKKAKDQK-EEDRRNYPTNTYKTLELEI 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 314 REKE-KAKELELETLQAsyEDLKAQSQEEIRHLWSQLESMKtnreeqngswepllAQASHLEELQHLRsdfaqqqqqERA 392
Cdd:NF033838 179 AESDvEVKKAELELVKE--EAKEPRDEEKIKQAKAKVESKK--------------AEATRLEKIKTDR---------EKA 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 393 QHESEL---EHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISSSCMFPEETsgrerkePPDPlDLQLEQP 469
Cdd:NF033838 234 EEEAKRradAKLKEAVEKNVATSEQDKPKRRAKRGVLGEPATPDKKENDAKSSDSSVGEET-------LPSP-SLKPEKK 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 470 KAQGS-LIEDYQEKLSNAEEK--------------IELMKQEFQKKEAEWELSREDLKRDA-EEKLAsmflELREKAESE 533
Cdd:NF033838 306 VAEAEkKVEEAKKKAKDQKEEdrrnyptntyktleLEIAESDVKVKEAELELVKEEAKEPRnEEKIK----QAKAKVESK 381
|
.
gi 564397520 534 K 534
Cdd:NF033838 382 K 382
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1058-1416 |
3.83e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.66 E-value: 3.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1058 SKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEglLEGFKVEKADLQEALGKKEES 1137
Cdd:TIGR00606 446 KEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKE--VKSLQNEKADLDRKLRKLDQE 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1138 EQQL-----------------IVELEDLRKQLQQASRELLTL------KEENSVLWNQKETFTNEAKEREAALQKEVESL 1194
Cdd:TIGR00606 524 MEQLnhhtttrtqmemltkdkMDKDEQIRKIKSRHSDELTSLlgyfpnKKQLEDWLHSKSKEINQTRDRLAKLNKELASL 603
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1195 TRDQWESRKQSEKDRATLLSqmrvleseLEDQLVQHRGC-------AQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAE 1267
Cdd:TIGR00606 604 EQNKNHINNELESKEEQLSS--------YEDKLFDVCGSqdeesdlERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDE 675
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1268 RE------HEREEFQQEIKWLEGQLRQATRPRPpgprdsqcakldEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQE 1341
Cdd:TIGR00606 676 NQsccpvcQRVFQTEAELQEFISDLQSKLRLAP------------DKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKE 743
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564397520 1342 EEIKHLEETNENIQRQMAQLQEELEKQRRsteELEVVNSRNSEIEELK---AIIEHLQENQEQLQKAKAEEIEQLHEV 1416
Cdd:TIGR00606 744 KEIPELRNKLQKVNRDIQRLKNDIEEQET---LLGTIMPEEESAKVCLtdvTIMERFQMELKDVERKIAQQAAKLQGS 818
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1329-1551 |
4.44e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 4.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1329 KKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELE-VVNSRNSEIEELKAIIEHLQENQEQLQKAKA 1407
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALArRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1408 EEIEQLHEVIEKLQselsLMGPTVHEMSDLPPGSLHTELSCLQAEGMGGQALHNELQAAQAAKGAFGQLladhghSQALE 1487
Cdd:COG4942 101 AQKEELAELLRALY----RLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL------RAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564397520 1488 ALQERLQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQRDLEIDAVNK 1551
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1066-1400 |
4.48e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.35 E-value: 4.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1066 QLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEES---EQQLI 1142
Cdd:pfam17380 292 KFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELErirQEEIA 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1143 VELEDLRkqlqQASRELLTLKEENSVLWNQKETfTNEAKEREAALQKEVESLTRDQWESRKQSEKDRATllsQMRVLESE 1222
Cdd:pfam17380 372 MEISRMR----ELERLQMERQQKNERVRQELEA-ARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQR---EVRRLEEE 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1223 LEDQLVQHRgcaqlaEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRprppgprdsqc 1302
Cdd:pfam17380 444 RAREMERVR------LEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQ----------- 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1303 akldeevELLQEKLREKLdgfnelvIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRN 1382
Cdd:pfam17380 507 -------AMIEEERKRKL-------LEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAME 572
|
330
....*....|....*...
gi 564397520 1383 SEIEELKAIIEHLQENQE 1400
Cdd:pfam17380 573 REREMMRQIVESEKARAE 590
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1065-1502 |
4.90e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 4.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1065 RQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLA---LELHTAEGLLEGFKVEKADLQEALGKKEESEQ-- 1139
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAelqEELEELEEELEELEAELEELREELEKLEKLLQll 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1140 QLIVELEDLRKQLQQASRELLTLKEENSV---LWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEKDRATLLSQM 1216
Cdd:COG4717 129 PLYQELEALEAELAELPERLEELEERLEElreLEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1217 RVLESELEdqlvqhrgcaQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPPG 1296
Cdd:COG4717 209 AELEEELE----------EAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1297 PRDSQCAKLDEEVELLQEK--LREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEE 1374
Cdd:COG4717 279 LFLVLGLLALLFLLLAREKasLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1375 LEVVNSRNSEIEELKAIIEHLQ-ENQEQLQKA--KAEEIEQLHEVIEKLQSELSLMGPTVHE-MSDLPPGSLHTELSCLQ 1450
Cdd:COG4717 359 LEEELQLEELEQEIAALLAEAGvEDEEELRAAleQAEEYQELKEELEELEEQLEELLGELEElLEALDEEELEEELEELE 438
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 564397520 1451 AEgmgGQALHNELQAAQAAKGAFGQLLADHGHSQALEALQERLQDAEAAAAR 1502
Cdd:COG4717 439 EE---LEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRE 487
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
201-972 |
4.91e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.20 E-value: 4.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 201 AELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKELSAKhqSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSL 280
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAK--KALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 281 KNLEAQHQAAIRKLQEDLRSEhcQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEIRHLWSQLESmktNREEQN 360
Cdd:pfam02463 243 QELLRDEQEEIESSKQEIEKE--EEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVD---DEEKLK 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 361 GSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEhlRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEI 440
Cdd:pfam02463 318 ESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEE--EEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 441 SSSCMFPEETSGRERKEPPDPLDLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEA--EWELSREDLKRDAEEK 518
Cdd:pfam02463 396 ELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQElkLLKDELELKKSEDLLK 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 519 LASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLE-RSLREQQGHLRQLEQELTRDEVLLCSQCGKEPSV 597
Cdd:pfam02463 476 ETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVgGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSA 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 598 AQDEKSAILLR----------------EKEDCALQLLTAQNRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGH 661
Cdd:pfam02463 556 TADEVEERQKLvraltelplgarklrlLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELT 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 662 QQQLLALRMELETKHHSELTEQLASLESKQQALLEthvaKMQVKHDAEISALEKRHLSNLDELESCYVADIQTIRDEhKK 741
Cdd:pfam02463 636 KLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSE----LTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQRE-KE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 742 ALELLRAELEEQLQKKDSCHREILTQELEKLKLKHAEELQSVRNSLRVKMSAQHTESgkgpaadlQGAHQQKAPAMALHN 821
Cdd:pfam02463 711 ELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKS--------ELSLKEKELAEEREK 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 822 EGHQLEEDGDAALGGADTEDLQHHAEPREREGPHTVEMQTSQTELAKPQELQASQDQGAQVRDQVFLLSRELEECRG--E 899
Cdd:pfam02463 783 TEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLeeE 862
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564397520 900 LEQLQQRRERENQEGATLICMLRADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRISERAGLLLDHED 972
Cdd:pfam02463 863 ITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEE 935
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2263-2533 |
5.35e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 5.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2263 RHLQRegQSSRALEELKISLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEAL---LAQEKGQLSELRKSLEAER 2339
Cdd:COG1196 203 EPLER--QAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELeaeLAELEAELEELRLELEELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2340 srsLELSEALQHERLLTEQLSRnaqeacarqdtqaqhaLLRKLKAEKARALELEAMLEKvqkqaahtqqqleaQAqercL 2419
Cdd:COG1196 281 ---LELEEAQAEEYELLAELAR----------------LEQDIARLEERRRELEERLEE--------------LE----E 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2420 ELRREKEvsgnlrsavdALQTHKQElgccLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDkRKWQRV 2499
Cdd:COG1196 324 ELAELEE----------ELEELEEE----LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE-ELAEEL 388
|
250 260 270
....*....|....*....|....*....|....
gi 564397520 2500 KEKLRELELQRQRDEHKIEQLQRLVRELRWKEEA 2533
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEE 422
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1117-1422 |
5.99e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 5.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1117 LEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEakerEAALQKEVESLTR 1196
Cdd:TIGR04523 386 IKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQ----DSVKELIIKNLDN 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1197 dqweSRKQSEKDRATLLSQMRVLESELEdqlvqhrgcaQLAEEVTTLKQQLatldKHLRSQRQFMDEQAAEREHEREEFQ 1276
Cdd:TIGR04523 462 ----TRESLETQLKVLSRSINKIKQNLE----------QKQKELKSKEKEL----KKLNEEKKELEEKVKDLTKKISSLK 523
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1277 QEIKWLEgqlrqatrprppgprdSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQlliqeEEIKHLEETNENIQR 1356
Cdd:TIGR04523 524 EKIEKLE----------------SEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKN-----KEIEELKQTQKSLKK 582
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564397520 1357 QMAQLQEELEKQRRSTEELevvnsrNSEIEELKAIIEHLqenQEQLQKAKAEEiEQLHEVIEKLQS 1422
Cdd:TIGR04523 583 KQEEKQELIDQKEKEKKDL------IKEIEEKEKKISSL---EKELEKAKKEN-EKLSSIIKNIKS 638
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
168-507 |
6.85e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.58 E-value: 6.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 168 ALLQSRQQCELELMREQHAR-EKEEMA--LRNEQETAELKEKFRSEMEKTVQM-METLKQDWESERELclETLRKElsaK 243
Cdd:pfam17380 283 AVSERQQQEKFEKMEQERLRqEKEEKAreVERRRKLEEAEKARQAEMDRQAAIyAEQERMAMEREREL--ERIRQE---E 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 244 HQSEMEGLQNQFQKELSEQKAELEKI-FQAKHEAEVSLKNLEAQHQAAIrkLQEDLRSEHCQYLQDLELRFREKEKAKEL 322
Cdd:pfam17380 358 RKRELERIRQEEIAMEISRMRELERLqMERQQKNERVRQELEAARKVKI--LEEERQRKIQQQKVEMEQIRAEQEEARQR 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 323 ELETLQASYEDLKAQSQEEIRHLWSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLR 402
Cdd:pfam17380 436 EVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKR 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 403 VYFEKKLNDAEKTYQEdltvfQQRLQEAREESLESAEIssscmfpeetsgRERKeppdpldlqleQPKAQGSLIEDYQEK 482
Cdd:pfam17380 516 KLLEKEMEERQKAIYE-----EERRREAEEERRKQQEM------------EERR-----------RIQEQMRKATEERSR 567
|
330 340
....*....|....*....|....*..
gi 564397520 483 LSNAEEKIELMKQ--EFQKKEAEWELS 507
Cdd:pfam17380 568 LEAMEREREMMRQivESEKARAEYEAT 594
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2138-2402 |
6.94e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 6.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2138 EARGSQREHQLRRQVE-----LLAYKVEQEKCIANDLQKTLSKEQEAASDVRKRLMVEQGAVQDLKSELHackqentNLL 2212
Cdd:TIGR02168 208 QAEKAERYKELKAELRelelaLLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVS-------ELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2213 ESLDKVQQEVLRLRAVLDGKENELKVVLEELEcergkgqvLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQL 2292
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILRERLA--------NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2293 CVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEALqherlltEQLSRNAQEACARQDT 2372
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL-------ERLEDRRERLQQEIEE 425
|
250 260 270
....*....|....*....|....*....|
gi 564397520 2373 QAQHALLRKLKAEKARALELEAMLEKVQKQ 2402
Cdd:TIGR02168 426 LLKKLEEAELKELQAELEELEEELEELQEE 455
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
128-563 |
8.70e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.58 E-value: 8.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 128 SLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQeLALLQSRQQCELELMREQHAREKEEMALRNEQETAELKEKF 207
Cdd:pfam15921 209 SMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQ-LEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKA 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 208 RSEMEKTVQMMETLKQDWESERElcletlRKELSAKHQSEMEGLQNQFQKELSEqkaelekifqAKHEAEVSLKNLEAQH 287
Cdd:pfam15921 288 SSARSQANSIQSQLEIIQEQARN------QNSMYMRQLSDLESTVSQLRSELRE----------AKRMYEDKIEELEKQL 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 288 QAAIRKLQEdLRSEHCQY----------LQDLELRFREKEKAKELELETLQASYeDLKAQSQEEIRHLWSQLES------ 351
Cdd:pfam15921 352 VLANSELTE-ARTERDQFsqesgnlddqLQKLLADLHKREKELSLEKEQNKRLW-DRDTGNSITIDHLRRELDDrnmevq 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 352 -----MKTNREEQNGSWEPLLAQASHLEELQHLRSDFAqqqqqerAQHESELEHLRVYFEK------KLNDAEKTYQeDL 420
Cdd:pfam15921 430 rlealLKAMKSECQGQMERQMAAIQGKNESLEKVSSLT-------AQLESTKEMLRKVVEEltakkmTLESSERTVS-DL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 421 TVFQQRLQEAREESleSAEIssscmfpeeTSGRERkeppdpLDLQLEQPKAqgslIEDYQEKLSNAEEKIELMKQEFQKK 500
Cdd:pfam15921 502 TASLQEKERAIEAT--NAEI---------TKLRSR------VDLKLQELQH----LKNEGDHLRNVQTECEALKLQMAEK 560
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564397520 501 EAEWELSR---EDLKRDAEEKLASMFLELREKAESEKLSIINRFELREssMRHLQDQQAAQISDLE 563
Cdd:pfam15921 561 DKVIEILRqqiENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQE--FKILKDKKDAKIRELE 624
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
121-357 |
9.29e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.20 E-value: 9.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 121 ELEALRLSLNNMHTAQLELTQANLQKEKETALTEL---REMLNGRRAQELALLQSRQQCELELMREQHAREKEEMALRNE 197
Cdd:pfam17380 349 ELERIRQEERKRELERIRQEEIAMEISRMRELERLqmeRQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 198 QETAELKEKFRSEMEKTVQmMETLKQDwESERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAE--LEKIFQAKHE 275
Cdd:pfam17380 429 QEEARQREVRRLEEERARE-MERVRLE-EQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRkiLEKELEERKQ 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 276 AEVSLKNLEaqhqaaiRKLQEDLRSEHCQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEirhlwSQLESMKTN 355
Cdd:pfam17380 507 AMIEEERKR-------KLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEER-----SRLEAMERE 574
|
..
gi 564397520 356 RE 357
Cdd:pfam17380 575 RE 576
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
508-1159 |
1.34e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 508 REDLKRDAEekLASMFLELREKAE----SEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRD 583
Cdd:COG1196 202 LEPLERQAE--KAERYRELKEELKeleaELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 584 EVLLcsqcgkepsVAQDEKSAILLREKEDC--ALQLLTAQNRFLEERKEIMEKFAKEQDAFLLDTQEKhshelqllqqgh 661
Cdd:COG1196 280 ELEL---------EEAQAEEYELLAELARLeqDIARLEERRRELEERLEELEEELAELEEELEELEEE------------ 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 662 qqqLLALRMELEtkhhsELTEQLASLESKQQALLEthvakmqvkhdaEISALEKRHLSNLDELESCYVADIQTIRDEHKK 741
Cdd:COG1196 339 ---LEELEEELE-----EAEEELEEAEAELAEAEE------------ALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 742 ALELLRAELEEQLQKKDschREILTQELEKLKLKHAEELQSVRNSLRVKMSAQHTEsgkgpAADLQGAHQQKAPAMALHN 821
Cdd:COG1196 399 AAQLEELEEAEEALLER---LERLEEELEELEEALAELEEEEEEEEEALEEAAEEE-----AELEEEEEALLELLAELLE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 822 EGHQLEEDGDAALGGADTEDLQHHAEPREREGPHtvEMQTSQTELAKPQELQASQDQGAQVRDQVFLLSRELEECRGELE 901
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARLLLLLEAEADYE--GFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAL 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 902 QLQQRRERENQEGAtlicmlrADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRISERAGLLLDHEDAVDTSGAQL 981
Cdd:COG1196 549 QNIVVEDDEVAAAA-------IEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 982 AAAALGEMWPDEGLLDIDRTLPEGAETSSvceisshvcesffmspentqeceQPIRKVYQSLSTAVEGLLDMALDSSKQL 1061
Cdd:COG1196 622 LLGRTLVAARLEAALRRAVTLAGRLREVT-----------------------LEGEGGSAGGSLTGGSRRELLAALLEAE 678
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1062 EDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQL 1141
Cdd:COG1196 679 AELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPE 758
|
650
....*....|....*...
gi 564397520 1142 IVELEDLRKQLQQASREL 1159
Cdd:COG1196 759 PPDLEELERELERLEREI 776
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2267-2533 |
1.35e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2267 REGQSSRALEELKISLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEaERSRSLELS 2346
Cdd:PTZ00121 1243 KKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE-EAKKADEAK 1321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2347 EALQHERLLTEQLSRNAQEACARQDTQAQHALLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKE 2426
Cdd:PTZ00121 1322 KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAE 1401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2427 VSGNLRSAVDALQTHKQELGCCLEREREKAAWLQAELEQLSARvKQQEARQ--DEKRMDRRSSREDLDKRKWQRVKEKLR 2504
Cdd:PTZ00121 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK-KADEAKKkaEEAKKAEEAKKKAEEAKKADEAKKKAE 1480
|
250 260 270
....*....|....*....|....*....|.
gi 564397520 2505 ElelQRQRDE--HKIEQLQRLVRELRWKEEA 2533
Cdd:PTZ00121 1481 E---AKKADEakKKAEEAKKKADEAKKAAEA 1508
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1120-1539 |
1.61e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1120 FKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRElltlkeensvlwnqketftNEAKEREAALQKEVESltRDQW 1199
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRE-------------------REKAERYQALLKEKRE--YEGY 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1200 E---SRKQSEKDRATLLSQMRVLESELEDQLVQhrgCAQLAEEVTTLKQQLATLDKHLRSQRQfmDEQAAerehereeFQ 1276
Cdd:TIGR02169 227 EllkEKEALERQKEAIERQLASLEEELEKLTEE---ISELEKRLEEIEQLLEELNKKIKDLGE--EEQLR--------VK 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1277 QEIKWLEGQLRQAtrprppgprDSQCAKLDEEVELLQEKLREkldgfnelvikkdlADQQLLIQEEEIKHLEETNENIQR 1356
Cdd:TIGR02169 294 EKIGELEAEIASL---------ERSIAEKERELEDAEERLAK--------------LEAEIDKLLAEIEELEREIEEERK 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1357 QMAQLQEELEKQRRSTEELEvvnsrnSEIEELKAIIEHLQENQEQLQkakaEEIEQLHEVIEKLQSELSLMGPTVHEmsd 1436
Cdd:TIGR02169 351 RRDKLTEEYAELKEELEDLR------AELEEVDKEFAETRDELKDYR----EKLEKLKREINELKRELDRLQEELQR--- 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1437 lppgsLHTELSCLQAEGMGGQALHNELQAAQAAKGA--------FGQLLADHG-HSQALEALQERLQDAEaaaaRHLTEL 1507
Cdd:TIGR02169 418 -----LSEELADLNAAIAGIEAKINELEEEKEDKALeikkqewkLEQLAADLSkYEQELYDLKEEYDRVE----KELSKL 488
|
410 420 430
....*....|....*....|....*....|..
gi 564397520 1508 EHCVALRQAEVEAMASRIQEFEATLKAKEAII 1539
Cdd:TIGR02169 489 QRELAEAEAQARASEERVRGGRAVEEVLKASI 520
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1121-1425 |
1.70e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.32 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1121 KVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNE----AKEREAALQKEVESLTR 1196
Cdd:TIGR04523 238 QQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEisdlNNQKEQDWNKELKSELK 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1197 DQWESRKQSEKDratlLSQMRVLESELEDQLvqhrgcAQLAEEVTTLKQQLATLDKHLR---SQRQFMDEQAAEREHERE 1273
Cdd:TIGR04523 318 NQEKKLEEIQNQ----ISQNNKIISQLNEQI------SQLKKELTNSESENSEKQRELEekqNEIEKLKKENQSYKQEIK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1274 EFQQEIKWLEGQLRQAtrprppgprDSQCAKLDEEVELLQ---EKLREKLDGFNELVIK-----KDLADQQLlIQEEEIK 1345
Cdd:TIGR04523 388 NLESQINDLESKIQNQ---------EKLNQQKDEQIKKLQqekELLEKEIERLKETIIKnnseiKDLTNQDS-VKELIIK 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1346 HLEETNENIQRQMAQLQEELEKQRRSTEELEV-VNSRNSEIEELKAIIEHLQENQEQLQKAKAE---EIEQLHEVIEKLQ 1421
Cdd:TIGR04523 458 NLDNTRESLETQLKVLSRSINKIKQNLEQKQKeLKSKEKELKKLNEEKKELEEKVKDLTKKISSlkeKIEKLESEKKEKE 537
|
....
gi 564397520 1422 SELS 1425
Cdd:TIGR04523 538 SKIS 541
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
146-542 |
1.72e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 146 KEKETALTELREMLNG--RRAQELALLQSR-QQCELELMREQHAREKEEMALRNEQETAELKEKFRSEMEKTVQMMETLK 222
Cdd:PRK03918 210 NEISSELPELREELEKleKEVKELEELKEEiEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 223 QDWESERELC--LETLRKELS------AKHQSEMEGLQNQFqKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQA--AIR 292
Cdd:PRK03918 290 EKAEEYIKLSefYEEYLDELReiekrlSRLEEEINGIEERI-KELEEKEERLEELKKKLKELEKRLEELEERHELyeEAK 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 293 KLQEDLRsehcqylqdlelrfREKEKAKELELETLQASYEDL---KAQSQEEIRHLWSQLESMKTNREEQNGSwepllaq 369
Cdd:PRK03918 369 AKKEELE--------------RLKKRLTGLTPEKLEKELEELekaKEEIEEEISKITARIGELKKEIKELKKA------- 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 370 ashLEELQHLRSDFAQQQQQERAQHESELehLRVYfEKKLNDAEKTYQEdltvFQQRLQEAREE--SLESAEISSSCMFP 447
Cdd:PRK03918 428 ---IEELKKAKGKCPVCGRELTEEHRKEL--LEEY-TAELKRIEKELKE----IEEKERKLRKElrELEKVLKKESELIK 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 448 EETSGRERKEppdpldlqleqpkAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKR--DAEEKLASMFLE 525
Cdd:PRK03918 498 LKELAEQLKE-------------LEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKleELKKKLAELEKK 564
|
410
....*....|....*..
gi 564397520 526 LREkAESEKLSIINRFE 542
Cdd:PRK03918 565 LDE-LEEELAELLKELE 580
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1097-1427 |
2.05e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.35 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1097 REESAAKDRLA---LELHTAEGLLEGFKVEKADLQEALGKKEE------SEQQLIVELEDLRKQLQQASRELLTLKEENS 1167
Cdd:TIGR00606 584 KEINQTRDRLAklnKELASLEQNKNHINNELESKEEQLSSYEDklfdvcGSQDEESDLERLKEEIEKSSKQRAMLAGATA 663
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1168 VLWNQKETFTNEAK------EREAALQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAE--- 1238
Cdd:TIGR00606 664 VYSQFITQLTDENQsccpvcQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDlke 743
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1239 -EVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQE---------IKWLEGQLRQATRPRPPGPRDSQCAKLDEE 1308
Cdd:TIGR00606 744 kEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAkvcltdvtiMERFQMELKDVERKIAQQAAKLQGSDLDRT 823
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1309 VELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEV----VNSRNSE 1384
Cdd:TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVElsteVQSLIRE 903
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 564397520 1385 IEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSELSLM 1427
Cdd:TIGR00606 904 IKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDI 946
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
679-1250 |
2.05e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 679 ELTEQLASLESKQQALLETHVAKMQVKHDAEISALEKRHLSNLDELESCyVADIQTIRDEHKKALELLRAELEEQLQKKD 758
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAEL-EAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 759 SCHREILTQELEKLKLKHAEE-LQSVRNSLRVKmsaqhtesgkgpAADLQGAHQQKAPAMALHNEGHQLEEDGDAALGGA 837
Cdd:COG1196 296 ELARLEQDIARLEERRRELEErLEELEEELAEL------------EEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 838 DTEDLQHHAEPREREGPHTVEMQTSQTELAKPQELQASQDQGAQVRDQVFLLSRELEECRGELEQLQQRRERENQEGATL 917
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 918 ICMLRADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRISERAGLLLDHEDAVDT----SGAQLAAAALGEMWPDE 993
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADyegfLEGVKAALLLAGLRGLA 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 994 GLLDIDRTLPEGAETSSVCEISSHVCESFFmspENTQECEQPIRKVYQSLSTAVEGLLDMALDSSKQLEDARQLHRcVEK 1073
Cdd:COG1196 524 GAVAVLIGVEAAYEAALEAALAAALQNIVV---EDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGA-IGA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1074 EFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQ 1153
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEA 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1154 QASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQwESRKQSEKDRATLLSQMRVLESELEDQLVQHRGC 1233
Cdd:COG1196 680 ELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE-ALEEQLEAEREELLEELLEEEELLEEEALEELPE 758
|
570 580
....*....|....*....|.
gi 564397520 1234 ----AQLAEEVTTLKQQLATL 1250
Cdd:COG1196 759 ppdlEELERELERLEREIEAL 779
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1333-1548 |
2.09e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.36 E-value: 2.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1333 ADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVvnsrnsEIEELKAIIEHLQENQEQLQKAKAEEIEQ 1412
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQA------ELEALQAEIDKLQAEIAEAEAEIEERREE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1413 LHEVIEKLQSELSLMGPTVHEMSDLPPGSLHTELSCLQAEGMGGQALHNELQAAQAAKGAFGQLLADHGhsQALEALQER 1492
Cdd:COG3883 88 LGERARALYRSGGSVSYLDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKL--AELEALKAE 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 564397520 1493 LQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQRDLEIDA 1548
Cdd:COG3883 166 LEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
2290-2533 |
2.28e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2290 NQLCVALKHERAAKDNLQKElQIEASRCEALLAQEKGQLSEL---RKSLEAERSRSLELSEAL----QHERLLTE---QL 2359
Cdd:pfam17380 272 NQLLHIVQHQKAVSERQQQE-KFEKMEQERLRQEKEEKAREVerrRKLEEAEKARQAEMDRQAaiyaEQERMAMErerEL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2360 SRNAQEACARQDTQAQHallRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAV---- 2435
Cdd:pfam17380 351 ERIRQEERKRELERIRQ---EEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEqira 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2436 ---DALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKLRELELQRQR 2512
Cdd:pfam17380 428 eqeEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQA 507
|
250 260
....*....|....*....|.
gi 564397520 2513 DEHKIEQLQRLVRELRWKEEA 2533
Cdd:pfam17380 508 MIEEERKRKLLEKEMEERQKA 528
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2233-2533 |
2.38e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 2.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2233 ENELKVVLEELECERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQ-LCVALKHERAAKDNLQKELQ 2311
Cdd:PTZ00121 1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKrVEIARKAEDARKAEEARKAE 1173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2312 iEASRCE-ALLAQEKGQLSELRKsleAERSRSLELSEALQHERLLTEqlSRNAQEAcaRQDTQAQHALLRKLKAEKARAL 2390
Cdd:PTZ00121 1174 -DAKKAEaARKAEEVRKAEELRK---AEDARKAEAARKAEEERKAEE--ARKAEDA--KKAEAVKKAEEAKKDAEEAKKA 1245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2391 ELEAMLEKVQK-QAAHTQQQLEAQAQERCLELRREKEV--SGNLRSAVDALQTHKQELGCCLEREREKA-----AWLQAE 2462
Cdd:PTZ00121 1246 EEERNNEEIRKfEEARMAHFARRQAAIKAEEARKADELkkAEEKKKADEAKKAEEKKKADEAKKKAEEAkkadeAKKKAE 1325
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564397520 2463 LEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKLRELELQRQRDEHKIEQLQRLVRELRWKEEA 2533
Cdd:PTZ00121 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1089-1423 |
2.61e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 46.43 E-value: 2.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1089 QQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSV 1168
Cdd:pfam07888 40 LQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDA 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1169 LWNQKE--------------TFTNEAKEREAAL------QKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELED--- 1225
Cdd:pfam07888 120 LLAQRAahearireleedikTLTQRVLERETELermkerAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQElrn 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1226 -QLVQHRGCAQLAEEVTTLKQQLATLDKHlRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPPGPRDSQCAK 1304
Cdd:pfam07888 200 sLAQRDTQVLQLQDTITTLTQKLTTAHRK-EAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQAR 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1305 LdeEVELLQEKLREKldgfnELVIKKDLA----DQQLLIQEEEIKH--LEETNENIQRQMAQLQEE-LEKQRRSTE---- 1373
Cdd:pfam07888 279 L--QAAQLTLQLADA-----SLALREGRArwaqERETLQQSAEADKdrIEKLSAELQRLEERLQEErMEREKLEVElgre 351
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 564397520 1374 ---ELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1423
Cdd:pfam07888 352 kdcNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLETV 404
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1305-1423 |
2.71e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.39 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1305 LDEEVELLQEKLREKLDGFNELVIKKDLADQQLLiqEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELE-------- 1376
Cdd:COG2433 378 IEEALEELIEKELPEEEPEAEREKEHEERELTEE--EEEIRRLEEQVERLEAEVEELEAELEEKDERIERLErelsears 455
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 564397520 1377 ----------VVNSRNSEIEELKAIIEHLQENQEQLQkakaEEIEQLHEVIEKLQSE 1423
Cdd:COG2433 456 eerreirkdrEISRLDREIERLERELEEERERIEELK----RKLERLKELWKLEHSG 508
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2293-2535 |
3.02e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 3.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2293 CVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEALqheRLLTEQLsrNAQEACARQDT 2372
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRI---RALEQEL--AALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2373 QAQHALLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAVDALQTHKQElgccLERE 2452
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE----LAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2453 REKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKwQRVKEKLRELELQRQRDEHKIEQLQRLVRELRWKEE 2532
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKEL-AELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
...
gi 564397520 2533 APG 2535
Cdd:COG4942 245 AAG 247
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1329-1508 |
3.16e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 3.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1329 KKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEV---VNSRNSEIEELKAIIEHLQEN------- 1398
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDeidVASAEREIAELEAELERLDASsddlaal 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1399 QEQLQKAKAeEIEQLHEVIEKLQSELSLMGPTVHEMSDLPPgSLHTELSclQAEGMGGQALHNELQAaqaakgAFGQLLA 1478
Cdd:COG4913 691 EEQLEELEA-ELEELEEELDELKGEIGRLEKELEQAEEELD-ELQDRLE--AAEDLARLELRALLEE------RFAAALG 760
|
170 180 190
....*....|....*....|....*....|
gi 564397520 1479 DHGHSQALEALQERLQDAEAAAARHLTELE 1508
Cdd:COG4913 761 DAVERELRENLEERIDALRARLNRAEEELE 790
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2030-2484 |
3.42e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 3.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2030 EKEALGTHLTWSEELLQAIQEVFAREQENAELQprpysSDLGDYNSLVKKLEKVIQEQGDLQ---KVREHACLPDRSSLL 2106
Cdd:COG1196 325 LAELEEELEELEEELEELEEELEEAEEELEEAE-----AELAEAEEALLEAEAELAEAEEELeelAEELLEALRAAAELA 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2107 AEIQALRAQLRmTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIANDLQKTLSKEQEAASDVRKR 2186
Cdd:COG1196 400 AQLEELEEAEE-ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2187 LMVEQGAVQDLKSELHACKQENTN--------LLESLDKVQQEVLRLRAVLDGKENELKVVLEELECERGKGQVLQAQQE 2258
Cdd:COG1196 479 LAELLEELAEAAARLLLLLEAEADyegflegvKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEV 558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2259 EQQLRHLQREGQSSRAlEELKISLEKQLAQNNQLCVALKHERAAkdNLQKELQIEASRCEALLAQEKGQLSELRKSLEAE 2338
Cdd:COG1196 559 AAAAIEYLKAAKAGRA-TFLPLDKIRARAALAAALARGAIGAAV--DLVASDLREADARYYVLGDTLLGRTLVAARLEAA 635
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2339 RSRSLELSEALQHERLLTEQLSRNAQEACARQDTQAQHALLRKLKAEKARALELEAMLEKVQKQAAhtQQQLEAQAQERC 2418
Cdd:COG1196 636 LRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLA--EEEEERELAEAE 713
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564397520 2419 LELRREKEVSGNLRSAVDALQTHKQELGCCLEREREKAAwLQAELEQLSARVKQQEARQDEKRMDR 2484
Cdd:COG1196 714 EERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA-LEELPEPPDLEELERELERLEREIEA 778
|
|
| CorA |
pfam01544 |
CorA-like Mg2+ transporter protein; The CorA transport system is the primary Mg2+ influx ... |
1276-1425 |
4.39e-04 |
|
CorA-like Mg2+ transporter protein; The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. The family includes the MRS2 protein from yeast that is thought to be an RNA splicing protein. However its membership of this family suggests that its effect on splicing is due to altered magnesium levels in the cell.
Pssm-ID: 460246 [Multi-domain] Cd Length: 292 Bit Score: 45.00 E-value: 4.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1276 QQEIKWLEgQLRQATRPRPPGPRDSQcakldeevELLQEKLREKLDGFNELVikkDLADQQLLIQEEEIkhLEETNENIQ 1355
Cdd:pfam01544 85 HEPLPALD-EVRKRLTLLGGGPLDPG--------DLLYRLLDEIVDRFLELL---EKLEDELDELEDEL--EDETNNELL 150
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564397520 1356 RQMAQLQEELEK-------QRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLqkakAEEIEQLHEVIEKLQSELS 1425
Cdd:pfam01544 151 RELAALRRSLVYlrrsllpQRDVLNRLLRREDDPLLDDEQKEYLRDLLDRLERL----LEDLDALRERLRSLQDEYS 223
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1027-1426 |
5.45e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 5.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1027 ENTQECEQPIRKVYQSLSTAVEGLLDM--ALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKD 1104
Cdd:TIGR00618 438 RYAELCAAAITCTAQCEKLEKIHLQESaqSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPAR 517
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1105 RLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLkeenSVLWNQKETFTNEAKERE 1184
Cdd:TIGR00618 518 QDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSIL----TQCDNRSKEDIPNLQNIT 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1185 AALQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRgcaqLAEEVTTLKQQLATLDK-----HLRSQRQ 1259
Cdd:TIGR00618 594 VRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQE----LALKLTALHALQLTLTQervreHALSIRV 669
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1260 FMDEQAAERehereefQQEIKWLEGQLRQATRPRPPGPRDSQCAKLDEEVELLQEKLREKldgfnelvIKKDLADQQLLI 1339
Cdd:TIGR00618 670 LPKELLASR-------QLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNE--------IENASSSLGSDL 734
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1340 QEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEK 1419
Cdd:TIGR00618 735 AAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPS 814
|
....*..
gi 564397520 1420 LQSELSL 1426
Cdd:TIGR00618 815 DEDILNL 821
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2147-2400 |
5.65e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 5.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2147 QLRRQVELLAYKVEQEKCIANDLQKTLSKEQEAASDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEVLRLR 2226
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2227 AVLDGKENELKVVLEELECERGKGQVLQAQQEEQQLRHLQREGQSSRALEELkiSLEKQLAQNNQLCVALKHERAAkdnl 2306
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL--TLLNEEAANLRERLESLERRIA---- 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2307 qkELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEALQHERLLTEQLSRNAQEACARQDTQA--QHALLRKLKA 2384
Cdd:TIGR02168 835 --ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSeeLRELESKRSE 912
|
250
....*....|....*.
gi 564397520 2385 EKARALELEAMLEKVQ 2400
Cdd:TIGR02168 913 LRRELEELREKLAQLE 928
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2064-2403 |
6.79e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 6.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2064 RPYSSDLGDYNSLVKKLEKVIQEQGDLQKVREhACLPDRSSLLAEIQALRAQLRMTHLQNQEKLQQLcAALTSTEARGSQ 2143
Cdd:TIGR02169 660 RAPRGGILFSRSEPAELQRLRERLEGLKRELS-SLQSELRRIENRLDELSQELSDASRKIGEIEKEI-EQLEQEEEKLKE 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2144 REHQLRR-----QVELLAYKVEQEKCIAN--DLQKTLSKEQEAASDVRKRLMVEQ-GAVQDLKSELHACKQENTNLLESL 2215
Cdd:TIGR02169 738 RLEELEEdlsslEQEIENVKSELKELEARieELEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRIEARLREI 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2216 DKVQQEVLRLRAVLDGKENELKVVLEELECERgkgqvlqaqqeeqqlRHLQREGQSSRA-LEELKISLEKQLAQNNQLCV 2294
Cdd:TIGR02169 818 EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQI---------------KSIEKEIENLNGkKEELEEELEELEAALRDLES 882
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2295 ALKHERAAKDNLQK----------ELQIEASRCEALLAQEKGQLSELR---KSLEAERSRSLELSEALQHERLLTEQLSR 2361
Cdd:TIGR02169 883 RLGDLKKERDELEAqlrelerkieELEAQIEKKRKRLSELKAKLEALEeelSEIEDPKGEDEEIPEEELSLEDVQAELQR 962
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2362 NAQE------------------ACARQDTQAQHAllrKLKAEKARALELEAMLEKVQKQA 2403
Cdd:TIGR02169 963 VEEEiralepvnmlaiqeyeevLKRLDELKEKRA---KLEEERKAILERIEEYEKKKREV 1019
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1128-1420 |
7.17e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 44.95 E-value: 7.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1128 QEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWN----QKETFTNEAKEREAALQKEVESLTRDQWEsrk 1203
Cdd:COG5185 267 LEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKAteslEEQLAAAEAEQELEESKRETETGIQNLTA--- 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1204 QSEKDRATLLSQMRVLESELEdQLVQHRGCAQLAEEVTTLKQQLATLDKHL----RSQRQFMDEQAAEREHEREEFQQEI 1279
Cdd:COG5185 344 EIEQGQESLTENLEAIKEEIE-NIVGEVELSKSSEELDSFKDTIESTKESLdeipQNQRGYAQEILATLEDTLKAADRQI 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1280 KWLEGQLRQATRPRPPGPRdsqcaKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIkhLEETNENIQRQMA 1359
Cdd:COG5185 423 EELQRQIEQATSSNEEVSK-----LLNELISELNKVMREADEESQSRLEEAYDEINRSVRSKKED--LNEELTQIESRVS 495
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564397520 1360 QLQEELEKQRRSTEelEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKL 1420
Cdd:COG5185 496 TLKATLEKLRAKLE--RQLEGVRSKLDQVAESLKDFMRARGYAHILALENLIPASELIQAS 554
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2107-2382 |
7.55e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 7.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2107 AEIQALRAQLRmthlQNQEKLQQLCAALTSTEargsQREHQLRRQVELLAYKVeqekciaNDLQKTLSKEQEAASDVRKR 2186
Cdd:COG4942 20 DAAAEAEAELE----QLQQEIAELEKELAALK----KEEKALLKQLAALERRI-------AALARRIRALEQELAALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2187 LMVEQGAVQDLKSELHACKQENTNLLESLDKVqqevlrlravldGKENELKVVLeelecergkgqvlQAQQEEQQLRHLQ 2266
Cdd:COG4942 85 LAELEKEIAELRAELEAQKEELAELLRALYRL------------GRQPPLALLL-------------SPEDFLDAVRRLQ 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2267 REGQSSRALEELKISLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELS 2346
Cdd:COG4942 140 YLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ 219
|
250 260 270
....*....|....*....|....*....|....*.
gi 564397520 2347 EALQHERLLTEQLSRNAQEACARQDTQAQHALLRKL 2382
Cdd:COG4942 220 QEAEELEALIARLEAEAAAAAERTPAAGFAALKGKL 255
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
188-913 |
9.05e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.96 E-value: 9.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 188 EKEEMALRNEQETAELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKELsakhqseMEGLQNQFQKELSEQKAELE 267
Cdd:TIGR00618 153 EFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQL-------LTLCTPCMPDTYHERKQVLE 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 268 KIFQAKHEAEVSLKNLEAQHQAAIRKLQEDLRSEH-CQYLQDLELRFREKEKAKELELETLQASYEDLK--------AQS 338
Cdd:TIGR00618 226 KELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQlLKQLRARIEELRAQEAVLEETQERINRARKAAPlaahikavTQI 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 339 QEEIRHLWSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEhLRVYFEKKLNDAE--KTY 416
Cdd:TIGR00618 306 EQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATS-IREISCQQHTLTQhiHTL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 417 QEDLTVFQQRLQEAREESLesaeissscmfpeetsgRERKEPPDPLDLQLEQPKAQGSLIedYQEKLSNAEEKIELMKQE 496
Cdd:TIGR00618 385 QQQKTTLTQKLQSLCKELD-----------------ILQREQATIDTRTSAFRDLQGQLA--HAKKQQELQQRYAELCAA 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 497 FQKKEAEWELSREDLKRDAEEKLasmflelreKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQL 576
Cdd:TIGR00618 446 AITCTAQCEKLEKIHLQESAQSL---------KEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPA 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 577 EQELTRDEVLLCSQCGKEPSVAQDEKS--------------AILLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDAF 642
Cdd:TIGR00618 517 RQDIDNPGPLTRRMQRGEQTYAQLETSeedvyhqltserkqRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRL 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 643 LLDTQEKHSHELQLLQQGHQQQLlalrmELETKHHSELTEQLASLESKQQALLETHVAKMQV---KHDAEISALekrhLS 719
Cdd:TIGR00618 597 QDLTEKLSEAEDMLACEQHALLR-----KLQPEQDLQDVRLHLQQCSQELALKLTALHALQLtltQERVREHAL----SI 667
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 720 NLDELESCYVADIQTIRDEHKKALELLRAELeeqLQKKDSCHREILTQELEKLKlkHAEELQSVRNSLRVKMSAQ---HT 796
Cdd:TIGR00618 668 RVLPKELLASRQLALQKMQSEKEQLTYWKEM---LAQCQTLLRELETHIEEYDR--EFNEIENASSSLGSDLAARedaLN 742
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 797 ESGKGPAADLQGAHQQKAPAMALHNEGHQLEEDGDAALGGADTEDLQHHAEPREREGP-HTVEMQTSQTELAKPQELQAS 875
Cdd:TIGR00618 743 QSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLlKTLEAEIGQEIPSDEDILNLQ 822
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|..
gi 564397520 876 QDQGAQVRDQVFLLSRE--------------LEECRGELEQLQQRRERENQE 913
Cdd:TIGR00618 823 CETLVQEEEQFLSRLEEksatlgeithqllkYEECSKQLAQLTQEQAKIIQL 874
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
2143-2522 |
9.08e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.04 E-value: 9.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2143 QREHQLRRQVELLAYKVEQEKCIANDLQKTLSKEqeaASDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEV 2222
Cdd:TIGR00606 684 QRVFQTEAELQEFISDLQSKLRLAPDKLKSTESE---LKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDI 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2223 LRLRAVLDGKENELKVVLEELEcergkgQVLQAQQEEQQLRHLQREgqssraLEELKISLEKQLA--QNNQLCVALKHER 2300
Cdd:TIGR00606 761 QRLKNDIEEQETLLGTIMPEEE------SAKVCLTDVTIMERFQME------LKDVERKIAQQAAklQGSDLDRTVQQVN 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2301 AAKDNLQKELQIEASRCE---ALLAQEKGQLSELRKSLEAERSRSLELSEALQHERLLTEQLSRNAQEAcarqdtqaqHA 2377
Cdd:TIGR00606 829 QEKQEKQHELDTVVSKIElnrKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEV---------QS 899
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2378 LLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAVDALQTHKQElgCCLEREREKaa 2457
Cdd:TIGR00606 900 LIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQD--GKDDYLKQK-- 975
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564397520 2458 wlQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKrkwQRVKEKLRELELQRQRDEHKIEQLQR 2522
Cdd:TIGR00606 976 --ETELNTVNAQLEECEKHQEKINEDMRLMRQDIDT---QKIQERWLQDNLTLRKRENELKEVEE 1035
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2267-2521 |
9.20e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 9.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2267 REGQSSRALEELKISLEKQLAQNNQLCVALKHERAAKDNLQKELQI---EASRCEALLAQEKGQLSELRKSLEAERSRSL 2343
Cdd:TIGR02169 682 RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQleqEEEKLKERLEELEEDLSSLEQEIENVKSELK 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2344 ELSEALQ--HERLLTEQLSRNAQEA-CARQDTQAQHALLRKLKAE----KARALELEAMLEKVQkqaahtqqqleaqaqe 2416
Cdd:TIGR02169 762 ELEARIEelEEDLHKLEEALNDLEArLSHSRIPEIQAELSKLEEEvsriEARLREIEQKLNRLT---------------- 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2417 rcLELRREKEVSGNLRSAVDALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKrkw 2496
Cdd:TIGR02169 826 --LEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRE--- 900
|
250 260
....*....|....*....|....*
gi 564397520 2497 qrVKEKLRELELQRQRDEHKIEQLQ 2521
Cdd:TIGR02169 901 --LERKIEELEAQIEKKRKRLSELK 923
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2221-2526 |
1.04e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2221 EVLRLRAVLDGKENELKVVLEELECERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQLcVALKHER 2300
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDL-SSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2301 AAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSL------------ELSEALQH-ERLLTEQLSRNAQEAC 2367
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIqaelskleeevsRIEARLREiEQKLNRLTLEKEYLEK 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2368 ARQDTQAQHALLRKLKAEKARALE-LEAMLEKVQKQAAHTQQQLEAQAQERcLELRREKEvsgNLRSAVDALQTHKQELG 2446
Cdd:TIGR02169 834 EIQELQEQRIDLKEQIKSIEKEIEnLNGKKEELEEELEELEAALRDLESRL-GDLKKERD---ELEAQLRELERKIEELE 909
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2447 CCLEREREKAAWLQAELEQLSARVKQQEarqDEKRMDRRSSREDLDKRKWQRV--------------------------- 2499
Cdd:TIGR02169 910 AQIEKKRKRLSELKAKLEALEEELSEIE---DPKGEDEEIPEEELSLEDVQAElqrveeeiralepvnmlaiqeyeevlk 986
|
330 340 350
....*....|....*....|....*....|..
gi 564397520 2500 -----KEKLRELELQRQRDEHKIEQLQRLVRE 2526
Cdd:TIGR02169 987 rldelKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1056-1550 |
1.07e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1056 DSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKE 1135
Cdd:TIGR02169 361 ELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1136 ESEQQLIVELEDLRKQLQQASRELLTLKEEnsvLWNQKETFtNEAKEREAALQKEVESL--TRDQWESRKQSEKDRATLL 1213
Cdd:TIGR02169 441 EEKEDKALEIKKQEWKLEQLAADLSKYEQE---LYDLKEEY-DRVEKELSKLQRELAEAeaQARASEERVRGGRAVEEVL 516
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1214 SQMRVLESELEDQLVQHRGCAQLAEEVT--------------TLKQQLATLDKHLRSQRQFM------DEQAAEREHERE 1273
Cdd:TIGR02169 517 KASIQGVHGTVAQLGSVGERYATAIEVAagnrlnnvvveddaVAKEAIELLKRRKAGRATFLplnkmrDERRDLSILSED 596
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1274 --------------EFQQEIKW----------------LEGQLRQATRP--------------RPPGPRDSQCAKLDEEV 1309
Cdd:TIGR02169 597 gvigfavdlvefdpKYEPAFKYvfgdtlvvedieaarrLMGKYRMVTLEgelfeksgamtggsRAPRGGILFSRSEPAEL 676
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1310 ELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEV-VNSRNSEIEEL 1388
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEdLSSLEQEIENV 756
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1389 KAIIEHLQENQEQLQKAKAEEIEQL--------HEVIEKLQSELSLMGPTVHEMS------DLPPGSLHTELSCLQAEGM 1454
Cdd:TIGR02169 757 KSELKELEARIEELEEDLHKLEEALndlearlsHSRIPEIQAELSKLEEEVSRIEarlreiEQKLNRLTLEKEYLEKEIQ 836
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1455 GGQALHNELQAAQAAKGAfgQLLADHGHSQALEALQERLQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKA 1534
Cdd:TIGR02169 837 ELQEQRIDLKEQIKSIEK--EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK 914
|
570
....*....|....*.
gi 564397520 1535 KEAIIVQRDLEIDAVN 1550
Cdd:TIGR02169 915 KRKRLSELKAKLEALE 930
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
224-688 |
1.10e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 224 DWESERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIRKLQE--DLRSE 301
Cdd:PRK02224 180 RVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREEleTLEAE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 302 HCQYLQDLELRFREKEKAKElELETLQASYEDLkaqsQEEIRHLWSQLESMKTNREeqngswepllAQASHLEELQhlrs 381
Cdd:PRK02224 260 IEDLRETIAETEREREELAE-EVRDLRERLEEL----EEERDDLLAEAGLDDADAE----------AVEARREELE---- 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 382 dfaqqqqQERAQHESELEHLRVYFEKKLNDAEkTYQEDLTVFQQRLQEAREESLESAEISSSCmfpeETSGRERKEPPDP 461
Cdd:PRK02224 321 -------DRDEELRDRLEECRVAAQAHNEEAE-SLREDADDLEERAEELREEAAELESELEEA----REAVEDRREEIEE 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 462 LDLQLEQPKAQgslIEDYQEKLSNAEEKIELM---KQEFQKKEAEWELSREDLKRDAEEklASMFLELREKAESEKlsii 538
Cdd:PRK02224 389 LEEEIEELRER---FGDAPVDLGNAEDFLEELreeRDELREREAELEATLRTARERVEE--AEALLEAGKCPECGQ---- 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 539 nrfELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLlcsqcgkepsvAQDEKSAILLREKEDCALQLL 618
Cdd:PRK02224 460 ---PVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDL-----------VEAEDRIERLEERREDLEELI 525
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 619 TAQNRFLEERKEIMEKFAKEQDAflLDTQEKHSHELQLLQQGHQQQLLALRMELETKhHSELTEQLASLE 688
Cdd:PRK02224 526 AERRETIEEKRERAEELRERAAE--LEAEAEEKREAAAEAEEEAEEAREEVAELNSK-LAELKERIESLE 592
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1121-1375 |
1.13e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.90 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1121 KVEKADLQEAL---GKKEESEQqlivELEDLRKQLQQASRELLTLKEEnsvLWNQKETFTNEAKEREAAL-QKEVESLTR 1196
Cdd:PRK11281 59 KLVQQDLEQTLallDKIDRQKE----ETEQLKQQLAQAPAKLRQAQAE---LEALKDDNDEETRETLSTLsLRQLESRLA 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1197 DQWESRKQSEKDRATLLSQMRVLESELEdqlvqhRGCAQLAEEVTTLkQQLATLDKHLRsqrqfmDEQAAEREHEREEFQ 1276
Cdd:PRK11281 132 QTLDQLQNAQNDLAEYNSQLVSLQTQPE------RAQAALYANSQRL-QQIRNLLKGGK------VGGKALRPSQRVLLQ 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1277 QEIKWLEGQLRQATrprppgprdsqcaKLDEEVELLQEKLREKLDgfnELVIKKDLADQQLLIQEEEI--KHLEETneni 1354
Cdd:PRK11281 199 AEQALLNAQNDLQR-------------KSLEGNTQLQDLLQKQRD---YLTARIQRLEHQLQLLQEAInsKRLTLS---- 258
|
250 260
....*....|....*....|.
gi 564397520 1355 QRQMAQLQEELEKQRRSTEEL 1375
Cdd:PRK11281 259 EKTVQEAQSQDEAARIQANPL 279
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
2263-2528 |
1.22e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.56 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2263 RHLQREGQSSRALEELKISLEKQlaqnnQLCVALKHERAAkdnlqkELQIEASRCEALLAQEKGQLSELRKSLEAERSRS 2342
Cdd:PRK04863 345 RQQEKIERYQADLEELEERLEEQ-----NEVVEEADEQQE------ENEARAEAAEEEVDELKSQLADYQQALDVQQTRA 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2343 LELSEALQ----------------------------HERLLTEQLSRNAQEACARQDTQAQHA----LLRKLKAEKAR-- 2388
Cdd:PRK04863 414 IQYQQAVQalerakqlcglpdltadnaedwleefqaKEQEATEELLSLEQKLSVAQAAHSQFEqayqLVRKIAGEVSRse 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2389 ----ALELEAMLEKVQKQAAHTQQQLEAQAqerclELRREKEvsgNLRSAVDALQTHKQELGCCLEREREKAAwLQAELE 2464
Cdd:PRK04863 494 awdvARELLRRLREQRHLAEQLQQLRMRLS-----ELEQRLR---QQQRAERLLAEFCKRLGKNLDDEDELEQ-LQEELE 564
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2465 QLSARVKQQEARQDEKRMDRRSSREDLDKR---------KWQRVKEKLRELELQ-------RQRDEHKIEQLQRLVRELR 2528
Cdd:PRK04863 565 ARLESLSESVSEARERRMALRQQLEQLQARiqrlaarapAWLAAQDALARLREQsgeefedSQDVTEYMQQLLERERELT 644
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1309-1532 |
1.51e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.26 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1309 VELLQEKLREKLDGFNELVIKKDLAD---------QQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVn 1379
Cdd:PRK02224 178 VERVLSDQRGSLDQLKAQIEEKEEKDlherlngleSELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETL- 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1380 srNSEIEELKAIIEHLQENQEQLqkakAEEIEQLHEVIEKLQSELSLMGPTVhEMSDLPPGSLHTELSCLQAEgmgGQAL 1459
Cdd:PRK02224 257 --EAEIEDLRETIAETEREREEL----AEEVRDLRERLEELEEERDDLLAEA-GLDDADAEAVEARREELEDR---DEEL 326
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564397520 1460 HNELQAAQAAKGAFGQLLadHGHSQALEALQERLQDAEAAAARHLTELEHC---VALRQAEVEAMASRIQEFEATL 1532
Cdd:PRK02224 327 RDRLEECRVAAQAHNEEA--ESLREDADDLEERAEELREEAAELESELEEAreaVEDRREEIEELEEEIEELRERF 400
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2377-2533 |
1.89e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2377 ALLRKLKAEKARALELEAMLEKVQKQAAHtqQQLEAQAQERCLELRREKEVSGNLRSAVDALQ-THKQELgccLEREREK 2455
Cdd:COG4913 225 EAADALVEHFDDLERAHEALEDAREQIEL--LEPIRELAERYAAARERLAELEYLRAALRLWFaQRRLEL---LEAELEE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2456 aawLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRV---KEKLRELELQRQRDEHKIEQLQRLVRELRWKEE 2532
Cdd:COG4913 300 ---LRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLeqlEREIERLERELEERERRRARLEALLAALGLPLP 376
|
.
gi 564397520 2533 A 2533
Cdd:COG4913 377 A 377
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2304-2528 |
2.05e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2304 DNLQKELQIEASRCEAL---LAQEKGQLSELRKSLEAERSRSLELSEALQHERLLTEQLsRNAQEACARQDTQAQHALLR 2380
Cdd:TIGR02168 680 EELEEKIEELEEKIAELekaLAELRKELEELEEELEQLRKELEELSRQISALRKDLARL-EAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2381 kLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAVDALQTHKQELGCCLEREREKAAWLQ 2460
Cdd:TIGR02168 759 -LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2461 AELEQLSARVKQQEARQDEKRMDRRSSREDLDK--RKWQRVKEKLRELELQRQRDEHKIEQLQRLVRELR 2528
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEEleSELEALLNERASLEEALALLRSELEELSEELRELE 907
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
286-586 |
2.17e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 286 QHQAAIRKLQEdlrSEHCQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEIRHLWSQLESMKTNREEQNGSwep 365
Cdd:pfam17380 279 QHQKAVSERQQ---QEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELER--- 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 366 lLAQASHLEELQHLRS-----DFAQQQQQERAQHESELEHLRVYFE----KKLNDAEKTYQEDLTVFQQRLQEAREESLE 436
Cdd:pfam17380 353 -IRQEERKRELERIRQeeiamEISRMRELERLQMERQQKNERVRQEleaaRKVKILEEERQRKIQQQKVEMEQIRAEQEE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 437 SAEISSSCMFPEETSGRERkeppdpldLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEwELSREDLKRDAE 516
Cdd:pfam17380 432 ARQREVRRLEEERAREMER--------VRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAE-EQRRKILEKELE 502
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 517 EKLASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQgHLRQLEQELTRDEVL 586
Cdd:pfam17380 503 ERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQE-QMRKATEERSRLEAM 571
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1303-1423 |
2.19e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1303 AKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQ---------LQEELEKQRRSTE 1373
Cdd:COG1579 27 KELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNvrnnkeyeaLQKEIESLKRRIS 106
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 564397520 1374 ELE--------VVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1423
Cdd:COG1579 107 DLEdeilelmeRIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
2070-2526 |
2.31e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2070 LGDYNSLVKKLEKVIQEQGDLQKVRehaclpdrssllaeiqalRAQLRMTHLQNQEKLQQLCA---ALTSTEARGSQREH 2146
Cdd:pfam15921 80 LEEYSHQVKDLQRRLNESNELHEKQ------------------KFYLRQSVIDLQTKLQEMQMerdAMADIRRRESQSQE 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2147 QLRRQVELLAYKVEQEKCIANDLQKTLSKEQEaasDVRKRLMVEQGAVQDLKSELHACKQEN---------------TNL 2211
Cdd:pfam15921 142 DLRNQLQNTVHELEAAKCLKEDMLEDSNTQIE---QLRKMMLSHEGVLQEIRSILVDFEEASgkkiyehdsmstmhfRSL 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2212 LESLDKVQQEVLRLRAVLDGKENELKVVLEELECERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQ 2291
Cdd:pfam15921 219 GSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQ 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2292 LCVALKHERAAKDNLQKELQIeaSRCEALLAQEKGQLSELRKSLEaERSRSLELSEALQHERLLTEQLSRN--AQEAcAR 2369
Cdd:pfam15921 299 SQLEIIQEQARNQNSMYMRQL--SDLESTVSQLRSELREAKRMYE-DKIEELEKQLVLANSELTEARTERDqfSQES-GN 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2370 QDTQAQHALLRKLKAEKARALELEAMLEKVQKQAAH--TQQQLEAQAQERCLELRR--------EKEVSGNLRSAVDALQ 2439
Cdd:pfam15921 375 LDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNsiTIDHLRRELDDRNMEVQRleallkamKSECQGQMERQMAAIQ 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2440 THKQELgcclererEKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLD------KRKWQRVKEKLRELELQRQRD 2513
Cdd:pfam15921 455 GKNESL--------EKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSdltaslQEKERAIEATNAEITKLRSRV 526
|
490
....*....|...
gi 564397520 2514 EHKIEQLQRLVRE 2526
Cdd:pfam15921 527 DLKLQELQHLKNE 539
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
1303-1423 |
2.35e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 42.70 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1303 AKLDEEVELLQE---KLREKLDGFN-ELVIKKDLA------DQQLL-IQEEEIKHLEETNENIQRQMAQLQEELEkqrrs 1371
Cdd:smart00787 161 KLLMKELELLNSikpKLRDRKDALEeELRQLKQLEdeledcDPTELdRAKEKLKKLLQEIMIKVKKLEELEEELQ----- 235
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 564397520 1372 teELE-VVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1423
Cdd:smart00787 236 --ELEsKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
194-521 |
2.53e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 194 LRNEQETAELKEKFRSEMEKTvQMMETLKQDWESERELclETLRKELSAKhqsemeglqnqfQKELSEQKAELEKIFQAK 273
Cdd:TIGR02169 203 LRREREKAERYQALLKEKREY-EGYELLKEKEALERQK--EAIERQLASL------------EEELEKLTEEISELEKRL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 274 HEAEVSLKNLEAQHQA----AIRKLQEDLRSEHCQYLQdlelrFREKEKAKELELETLQASyedlKAQSQEEIRHLWSQL 349
Cdd:TIGR02169 268 EEIEQLLEELNKKIKDlgeeEQLRVKEKIGELEAEIAS-----LERSIAEKERELEDAEER----LAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 350 ESMKTNREEQNGSWEPLLAQASHL-EELQHLRSDFAQQQQQERAQHEsELEHLRVYFEkKLNDAEKTYQEDLTVFQQRLQ 428
Cdd:TIGR02169 339 EELEREIEEERKRRDKLTEEYAELkEELEDLRAELEEVDKEFAETRD-ELKDYREKLE-KLKREINELKRELDRLQEELQ 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 429 EAREEsLESAEISSSCMFPEETSGRERKEppdplDLQLEQPKAQGSLiEDYQEKLSNAEEKIELMKQEFQKKEAEwelsR 508
Cdd:TIGR02169 417 RLSEE-LADLNAAIAGIEAKINELEEEKE-----DKALEIKKQEWKL-EQLAADLSKYEQELYDLKEEYDRVEKE----L 485
|
330
....*....|...
gi 564397520 509 EDLKRDAEEKLAS 521
Cdd:TIGR02169 486 SKLQRELAEAEAQ 498
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1072-1423 |
2.54e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.67 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1072 EKEFRHRDEEMAQAVQKQQELLERLREEsaakdrlaleLHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQ 1151
Cdd:pfam12128 599 EEELRERLDKAEEALQSAREKQAAAEEQ----------LVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDK 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1152 LQQASRELLTLKEEnsvlwnQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEKDRatllsqmRVLESELEDQLvqhr 1231
Cdd:pfam12128 669 KNKALAERKDSANE------RLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYW-------QVVEGALDAQL---- 731
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1232 gcAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPPGPR---------DSQC 1302
Cdd:pfam12128 732 --ALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRyfdwyqetwLQRR 809
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1303 AKLDEEVELLQEKLREkldgfnelvIKKDLADQQlliqeeeikhlEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRN 1382
Cdd:pfam12128 810 PRLATQLSNIERAISE---------LQQQLARLI-----------ADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEM 869
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 564397520 1383 SEIEELkaiieHLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1423
Cdd:pfam12128 870 SKLATL-----KEDANSEQAQGSIGERLAQLEDLKLKRDYL 905
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1027-1409 |
2.61e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1027 ENTQECEQPIRKVYQSLSTAVEglLDMALDSSKQLEDARQLHRCVEK--EFRHRDEEMAQAVQKQQELLERLREESAAKD 1104
Cdd:PTZ00121 1388 EEKKKADEAKKKAEEDKKKADE--LKKAAAAKKKADEAKKKAEEKKKadEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1105 rlALELHTAEGLLEgfKVEKADLQEALGKKEESEQQLIVEL----------EDLRKQLQQASRELLTLKEENsvlwNQKE 1174
Cdd:PTZ00121 1466 --AEEAKKADEAKK--KAEEAKKADEAKKKAEEAKKKADEAkkaaeakkkaDEAKKAEEAKKADEAKKAEEA----KKAD 1537
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1175 TFTNEAKEREAALQKEVESLTRDQwESRKQSEKDRATLLSQMRVLESELEDQLVQHR--GCAQLAEEVTTLKQQLATLDK 1252
Cdd:PTZ00121 1538 EAKKAEEKKKADELKKAEELKKAE-EKKKAEEAKKAEEDKNMALRKAEEAKKAEEARieEVMKLYEEEKKMKAEEAKKAE 1616
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1253 HLRSQRQFM---DEQAAEREHEREEFQQEIKWLEgQLRQA-----TRPRPPGPRDSQCAKLDEEVELLQEKLREKLDGFN 1324
Cdd:PTZ00121 1617 EAKIKAEELkkaEEEKKKVEQLKKKEAEEKKKAE-ELKKAeeenkIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1325 ELVIKKDLADQQLLIQEEEIKHLEE---TNENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQ 1401
Cdd:PTZ00121 1696 KEAEEAKKAEELKKKEAEEKKKAEElkkAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRK 1775
|
....*...
gi 564397520 1402 LQKAKAEE 1409
Cdd:PTZ00121 1776 EKEAVIEE 1783
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
179-278 |
2.69e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.53 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 179 ELMREQHAREKEEMALRNEQETA--ELKEKFRSEMEKTVQMMETLKQDWESERELCLE--TLRKELSAKHqsemeGLQNQ 254
Cdd:COG0542 415 ELERRLEQLEIEKEALKKEQDEAsfERLAELRDELAELEEELEALKARWEAEKELIEEiqELKEELEQRY-----GKIPE 489
|
90 100 110
....*....|....*....|....*....|.
gi 564397520 255 FQKELSEQKAELEKIFQAKHE-------AEV 278
Cdd:COG0542 490 LEKELAELEEELAELAPLLREevteediAEV 520
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1094-1291 |
2.72e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1094 ERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQK 1173
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1174 ETFTNEAKEREAALQK-----EVESLTRDqwESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLA 1248
Cdd:COG4942 100 EAQKEELAELLRALYRlgrqpPLALLLSP--EDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 564397520 1249 TLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATR 1291
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQ 220
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
198-345 |
3.26e-03 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 42.18 E-value: 3.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 198 QETAELKEKFRSEMEKTVQMMETLKQDWESeRELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKifQAKHEAE 277
Cdd:cd16269 149 EDREKLVEKYRQVPRKGVKAEEVLQEFLQS-KEAEAEAILQADQALTEKEKEIEAERAKAEAAEQERKLLE--EQQRELE 225
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 278 VSLKNLEAQHQAAIRKLQEDLRSEHCQYLQDLE--LRFREKEKAKELELETLQASyedlkAQSQEEIRHL 345
Cdd:cd16269 226 QKLEDQERSYEEHLRQLKEKMEEERENLLKEQEraLESKLKEQEALLEEGFKEQA-----ELLQEEIRSL 290
|
|
| BspD6I-like |
cd22316 |
nicking endonuclease Nt.BspD6I and similar endonucleases; Heterodimeric type II restriction ... |
1303-1423 |
3.31e-03 |
|
nicking endonuclease Nt.BspD6I and similar endonucleases; Heterodimeric type II restriction endonuclease nicking endonuclease BspD6I recognizes a pseudosymmetric DNA sequence (5'-GAGTC) and cuts both strands outside the recognition motif 4 nucleotides downstream. It forms the large subunit in a heterodimeric arrangement. This catalytic domain/subunit belongs to a superfamily of PDDEXK nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Pssm-ID: 411720 Cd Length: 345 Bit Score: 42.67 E-value: 3.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1303 AKLDEEVELLQEKLREKLDGFNELVIKKDLADqqlliqeeeIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNS-- 1380
Cdd:cd22316 38 EKKVEVEEILSNVERKPIFFDSDDDYLEYLFN---------PALPPLDNDDKANLVLELLRIRLKERGILIKISSKPLlt 108
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 564397520 1381 ---RNSEIEELKAIIEHLQENQeqLQKAKAEEIEQLHEVIEKLQSE 1423
Cdd:cd22316 109 padLNIIRKELENKLKKLREKK--YAKRQAEDWEEILEYFDLIENR 152
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2137-2532 |
3.42e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 3.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2137 TEARGSQREHQLRRQVELLAYKVEQEKCIANDLQKTLSKEQEAASDVRK--RLMVEQGAVQDLKSELHA-CKQENTNLLE 2213
Cdd:PRK03918 315 RLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELyeEAKAKKEELERLKKRLTGlTPEKLEKELE 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2214 SLDKVQQEV-------LRLRAVLDGKENELKVVLEELECERGKGQVLQAQQEEQQLRHLQREgqssrALEELKiSLEKQL 2286
Cdd:PRK03918 395 ELEKAKEEIeeeiskiTARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEE-----YTAELK-RIEKEL 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2287 AQnnqlcvALKHERAAKDNLqKELQIEASRCEALLAQEK--GQLSELRKSLEAERSRSLElSEALQHERLLTEQLSRNAQ 2364
Cdd:PRK03918 469 KE------IEEKERKLRKEL-RELEKVLKKESELIKLKElaEQLKELEEKLKKYNLEELE-KKAEEYEKLKEKLIKLKGE 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2365 EACARQDTQAQHALLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAVDALQTHKQE 2444
Cdd:PRK03918 541 IKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKE 620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2445 LGCC---LEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKLRELELQRQRDEHKIEQLQ 2521
Cdd:PRK03918 621 LKKLeeeLDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLK 700
|
410
....*....|.
gi 564397520 2522 RLVRELRWKEE 2532
Cdd:PRK03918 701 EELEEREKAKK 711
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1059-1231 |
3.55e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1059 KQLEDARQLHRCVEkEFRHRDEEMAQAVQKQQEL---LERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKE 1135
Cdd:COG4913 641 DALQERREALQRLA-EYSWDEIDVASAEREIAELeaeLERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLE 719
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1136 ESEQQLIVELEDLRKQLQQASRElltlkeensvlwNQKETFTNEAKEREAALQKEVESLTRDQWESRkqsekdRATLLSQ 1215
Cdd:COG4913 720 KELEQAEEELDELQDRLEAAEDL------------ARLELRALLEERFAAALGDAVERELRENLEER------IDALRAR 781
|
170
....*....|....*.
gi 564397520 1216 MRVLESELEDQLVQHR 1231
Cdd:COG4913 782 LNRAEEELERAMRAFN 797
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
181-580 |
3.55e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 181 MR-EQHAREKEEMALRNEQETAELKEKFRSEMEKTVQMME----------TLKQDWESERE---LCLETLR-KELSAKHQ 245
Cdd:PRK04863 275 MRhANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARelaelneaesDLEQDYQAASDhlnLVQTALRqQEKIERYQ 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 246 SEMEGL------QNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIrKLQEDLRSEHCQYLQDLElRFREKEKA 319
Cdd:PRK04863 355 ADLEELeerleeQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQAL-DVQQTRAIQYQQAVQALE-RAKQLCGL 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 320 KELELETLQASYEDLKAQSQE---EIRHLWSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHES 396
Cdd:PRK04863 433 PDLTADNAEDWLEEFQAKEQEateELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLA 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 397 E-LEHLRvyfeKKLNDAEKTYQEdltvfQQRLQEAREESlesaeissscmfpeetSGRERKEPPDPLDLQLEQpKAQGSL 475
Cdd:PRK04863 513 EqLQQLR----MRLSELEQRLRQ-----QQRAERLLAEF----------------CKRLGKNLDDEDELEQLQ-EELEAR 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 476 IEDYQEKLSNAEEKIELMKQEfqkkeaewelsREDLKRDAEE--KLASMFLELREKAEseklsiinrfELRESSMRHLQD 553
Cdd:PRK04863 567 LESLSESVSEARERRMALRQQ-----------LEQLQARIQRlaARAPAWLAAQDALA----------RLREQSGEEFED 625
|
410 420 430
....*....|....*....|....*....|..
gi 564397520 554 QQA-----AQISDLERSLREQQGHLRQLEQEL 580
Cdd:PRK04863 626 SQDvteymQQLLERERELTVERDELAARKQAL 657
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1144-1368 |
3.76e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 3.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1144 ELEDLRKQ------LQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEKDRATLLSQMR 1217
Cdd:COG4913 243 ALEDAREQiellepIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1218 VLESELEDQLVQHRGcaqlaEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRprppgp 1297
Cdd:COG4913 323 EELDELEAQIRGNGG-----DRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAA------ 391
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564397520 1298 rdsQCAKLDEEVELLQEKLREKLDGFNELviKKDLADQqlliqEEEIKHLEETNENIQRQMAQLQEELEKQ 1368
Cdd:COG4913 392 ---LLEALEEELEALEEALAEAEAALRDL--RRELREL-----EAEIASLERRKSNIPARLLALRDALAEA 452
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1328-1602 |
3.89e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1328 IKKDLADQQLLIQ----EEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQ 1403
Cdd:TIGR02168 218 LKAELRELELALLvlrlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1404 KAKAEEIEQLHEVIEKLQSELSlMGPTVHEMSDLPPGSLHTELSCLQAEGMGGQALHNELQAAQAAKGAFGQLLadhghS 1483
Cdd:TIGR02168 298 SRLEQQKQILRERLANLERQLE-ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL-----E 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1484 QALEALQERLQDAEAAAArhltELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQRDLEIDAVNKWKVSHSVELEAL 1563
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVA----QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 564397520 1564 LLALAHFQHA-VEQQTSATPDEPPKLQQLLVQCARLSHQL 1602
Cdd:TIGR02168 448 ELEELQEELErLEEALEELREELEEAEQALDAAERELAQL 487
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2044-2528 |
4.23e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 4.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2044 LLQAIQEVFAR--EQENAEL---QPRPYSSDLGDYNSLVKKLEKVIQEQGDLQKVREHacLPDRSSLLAEIQALRAQLR- 2117
Cdd:COG4717 39 LLAFIRAMLLErlEKEADELfkpQGRKPELNLKELKELEEELKEAEEKEEEYAELQEE--LEELEEELEELEAELEELRe 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2118 -MTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIANDLQKTLSKEQEAASDVRKRLMVEQGAVQD 2196
Cdd:COG4717 117 eLEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQD 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2197 LKSELHACKQENTNLLESLDKVQQEVLRLRAVLDGKENELKVVLEELECERGKGQVLQAQQEEQQLRHLQREGQSSRALE 2276
Cdd:COG4717 197 LAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIA 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2277 ELKISLEKQLAqnnqlCVALKHERAAKDNLQKELQIEASRCEALLAQE--KGQLSELRKSLEAERSRSLELSEALQHERL 2354
Cdd:COG4717 277 GVLFLVLGLLA-----LLFLLLAREKASLGKEAEELQALPALEELEEEelEELLAALGLPPDLSPEELLELLDRIEELQE 351
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2355 LTEQLSRNAQEACARQDTQAQHALLRKLKAEKARALE--LEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLR 2432
Cdd:COG4717 352 LLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRaaLEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELE 431
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2433 SAVDALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEkrmdrrssredldkrkwQRVKEKLRELELQRQR 2512
Cdd:COG4717 432 EELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQEL-----------------EELKAELRELAEEWAA 494
|
490
....*....|....*....
gi 564397520 2513 D---EHKIEQLQRLVRELR 2528
Cdd:COG4717 495 LklaLELLEEAREEYREER 513
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1306-1423 |
4.80e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 4.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1306 DEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEetneniqRQMAQLQEELEKqrrsteELEVVNSRNSEI 1385
Cdd:PRK12704 46 EAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLE-------KRLLQKEENLDR------KLELLEKREEEL 112
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 564397520 1386 EELKAIIEHLQEN----QEQLQKAKAEEIEQLhEVIEKLQSE 1423
Cdd:PRK12704 113 EKKEKELEQKQQElekkEEELEELIEEQLQEL-ERISGLTAE 153
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2275-2479 |
4.82e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 4.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2275 LEELKISLEK------QLAQNNQLcVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEA 2348
Cdd:COG3206 184 LPELRKELEEaeaaleEFRQKNGL-VDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQS 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2349 LQHERLLTEQLSRNAQEACARQDTQAQHALLRKLKAEKAralELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEvs 2428
Cdd:COG3206 263 PVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIA---ALRAQLQQEAQRILASLEAELEALQAREASLQAQLA-- 337
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564397520 2429 gNLRSAVDALQTHKQELgccLEREREKAAwLQAELEQLSARvkQQEARQDE 2479
Cdd:COG3206 338 -QLEARLAELPELEAEL---RRLEREVEV-ARELYESLLQR--LEEARLAE 381
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1054-1424 |
5.02e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 5.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1054 ALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAK---DRLALELHTAEGLLEGFKVEKAdlqEA 1130
Cdd:PTZ00121 1492 AEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKaeeKKKADELKKAEELKKAEEKKKA---EE 1568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1131 LGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEKDRa 1210
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK- 1647
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1211 tllsQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQL--ATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQ 1288
Cdd:PTZ00121 1648 ----KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAkkAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1289 ATRPRPPgpRDSQCAKLDEEVELLQEKLREKLDGFNELvikkdladqQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQ 1368
Cdd:PTZ00121 1724 AEEENKI--KAEEAKKEAEEDKKKAEEAKKDEEEKKKI---------AHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKR 1792
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 564397520 1369 RRSTEELEVVNSRNSEIeelkaIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSEL 1424
Cdd:PTZ00121 1793 RMEVDKKIKDIFDNFAN-----IIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQL 1843
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
1090-1413 |
5.68e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 42.13 E-value: 5.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1090 QELLERLRE---ESAAKDRLALE--LHTAEGLLEGFKVEKAdlqealgKKEESE-QQLIVELEDLRKQLQQASRELLTLK 1163
Cdd:PRK04778 63 EEKFEEWRQkwdEIVTNSLPDIEeqLFEAEELNDKFRFRKA-------KHEINEiESLLDLIEEDIEQILEELQELLESE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1164 EENSvlwnqketftneakereaalqKEVESLTRDQWESRKQSEKDRATLLSQMRVLE---SELEDQLVQHrgcAQLAEE- 1239
Cdd:PRK04778 136 EKNR---------------------EEVEQLKDLYRELRKSLLANRFSFGPALDELEkqlENLEEEFSQF---VELTESg 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1240 -VTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPPGPRDsqcaKLDEEVELLQEKLRE 1318
Cdd:PRK04778 192 dYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHL----DIEKEIQDLKEQIDE 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1319 KLDgfnelvikkdladqqlLIQEEEIKHLEETNENIQRQMAQLQEELEKqrrsteELEVVNSRNSEIEELKAIIEHLQEN 1398
Cdd:PRK04778 268 NLA----------------LLEELDLDEAEEKNEEIQERIDQLYDILER------EVKARKYVEKNSDTLPDFLEHAKEQ 325
|
330
....*....|....*
gi 564397520 1399 QEQLQkakaEEIEQL 1413
Cdd:PRK04778 326 NKELK----EEIDRV 336
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
1073-1229 |
5.86e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 41.67 E-value: 5.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1073 KEFRHRDEEMAQAVQKQQELLERLREESAAKDrlaLELHTAEGL-LEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQ 1151
Cdd:pfam09787 7 QELADYKQKAARILQSKEKLIASLKEGSGVEG---LDSSTALTLeLEELRQERDLLREEIQKLRGQIQQLRTELQELEAQ 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564397520 1152 LQQasrELLTLKEENSVLwnqKETFTNEAKEREAAlQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQ 1229
Cdd:pfam09787 84 QQE---EAESSREQLQEL---EEQLATERSARREA-EAELERLQEELRYLEEELRRSKATLQSRIKDREAEIEKLRNQ 154
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1057-1374 |
5.88e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.20 E-value: 5.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1057 SSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKqqelLERLREEsaaKDRLALELHTAEgllegFKVEKADLQEALGKKEE 1136
Cdd:PLN02939 126 SDFQLEDLVGMIQNAEKNILLLNQARLQALED----LEKILTE---KEALQGKINILE-----MRLSETDARIKLAAQEK 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1137 SEQQLIVE-LEDLRKQLQQA-----------SRELLTLKEENSVLWNQKEtftneakereaALQKEVESLTRDQwESRKQ 1204
Cdd:PLN02939 194 IHVEILEEqLEKLRNELLIRgateglcvhslSKELDVLKEENMLLKDDIQ-----------FLKAELIEVAETE-ERVFK 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1205 SEKDRATLLSQMRVLESEL----EDQL-VQHRGCAQLAEEVTTLKQQLATLDKHLrsqrqfmdEQAAEREHEREEFQQEI 1279
Cdd:PLN02939 262 LEKERSLLDASLRELESKFivaqEDVSkLSPLQYDCWWEKVENLQDLLDRATNQV--------EKAALVLDQNQDLRDKV 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1280 KWLEGQLRQAtrprppgprdsQCAKLD-EEVELLQEKLREKLDGFnelvikkDLADQQLLIQeeeIKHLEETNENIQRQM 1358
Cdd:PLN02939 334 DKLEASLKEA-----------NVSKFSsYKVELLQQKLKLLEERL-------QASDHEIHSY---IQLYQESIKEFQDTL 392
|
330
....*....|....*.
gi 564397520 1359 AQLQEELEKqrRSTEE 1374
Cdd:PLN02939 393 SKLKEESKK--RSLEH 406
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
2097-2523 |
6.40e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 42.35 E-value: 6.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2097 ACLPDRSSLLAEIQALRAQlrmTHLQNQEKLQQLCAALTS-TEARGSQREHQLRRQVellaykVEQEKCIANDLQKTLSK 2175
Cdd:PRK10929 20 ATAPDEKQITQELEQAKAA---KTPAQAEIVEALQSALNWlEERKGSLERAKQYQQV------IDNFPKLSAELRQQLNN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2176 EQEAASDVRKRLmveqgAVQDLKSELhacKQENTNLLESLDKVQQEVLRLRAVLD------GKENELKVVLEELEcergk 2249
Cdd:PRK10929 91 ERDEPRSVPPNM-----STDALEQEI---LQVSSQLLEKSRQAQQEQDRAREISDslsqlpQQQTEARRQLNEIE----- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2250 gqvlqaqqeeqqlRHLQREGQSSRALEElkislekqlAQNnqlcVALKHERAAKDNLQKELQI---------EASRCEAL 2320
Cdd:PRK10929 158 -------------RRLQTLGTPNTPLAQ---------AQL----TALQAESAALKALVDELELaqlsannrqELARLRSE 211
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2321 LAQEK-----GQLSELRKSLEAERSRSLELseALQHerllTEQLsrnaqeacARQDTQAQHALLRKLKAEKaralELEAM 2395
Cdd:PRK10929 212 LAKKRsqqldAYLQALRNQLNSQRQREAER--ALES----TELL--------AEQSGDLPKSIVAQFKINR----ELSQA 273
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 2396 LekvQKQAahtqqqleaqaqerclelRREKEVSGNLRSAVDALQTHKQELGCClereREKAAWLQAEL---EQLSARVkq 2472
Cdd:PRK10929 274 L---NQQA------------------QRMDLIASQQRQAASQTLQVRQALNTL----REQSQWLGVSNalgEALRAQV-- 326
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 564397520 2473 qeARQDEKRmdrrssredldkrKWQRVKEKLRELELQRQRDEHKIEQLQRL 2523
Cdd:PRK10929 327 --ARLPEMP-------------KPQQLDTEMAQLRVQRLRYEDLLNKQPQL 362
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
232-499 |
6.51e-03 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 42.08 E-value: 6.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 232 CLETLRKELSA-KHQSEMEGLQNQFQKELSEQ---KAELEKIFQAKHEAEV-----SLKNLEAQHQAAIRKLQEDLRSEH 302
Cdd:PTZ00341 294 CRKIMNSDISSfKHINELKSLEHRAAKAAEAEmkkRAEKPKKKKSKRRGWLccgggDIETVEPQQEEPVQDVGEHQINEY 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 303 CQYLQDLELRFREK--------EKAKELELETLQASYED----LKAQSQEEIRHL-WSQLESMKTNREEQNG-SWEPLLA 368
Cdd:PTZ00341 374 GDILPSLKASINNSainyydavKDGKYLDDDSSDALYTDedllFDLEKQKYMDMLdGSEDESVEDNEEEHSGdANEEELS 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 369 QASHLEElQHLRSDFAQQQQQERAQHESELEhlrVYFEKKLNDaektYQEDLTVFQQRLQEAREESLESAEIssscmfpe 448
Cdd:PTZ00341 454 VDEHVEE-HNADDSGEQQSDDESGEHQSVNE---IVEEQSVNE----HVEEPTVADIVEQETVDEHVEEPAV-------- 517
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 564397520 449 etsgrERKEPPDPLDLQLEQPKAQGSLIedyQEKLSNAEEKIELMKQEFQK 499
Cdd:PTZ00341 518 -----DENEEQQTADEHVEEPTIAEEHV---EEEISTAEEHIEEPASDVQQ 560
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1347-1542 |
7.02e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 7.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1347 LEETNENIQR----------QMAQLQEELEKQRR------STEELEV------VNSRNSEIEELKAIIEHLQENQEQLQK 1404
Cdd:COG1196 181 LEATEENLERledilgelerQLEPLERQAEKAERyrelkeELKELEAellllkLRELEAELEELEAELEELEAELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1405 AKAE---EIEQLHEVIEKLQSELSLMGPTVHEmsdlppgsLHTELSCLQAEGMGGQALHNELQAAQAAKGAFGQLLADH- 1480
Cdd:COG1196 261 ELAEleaELEELRLELEELELELEEAQAEEYE--------LLAELARLEQDIARLEERRRELEERLEELEEELAELEEEl 332
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564397520 1481 -GHSQALEALQERLQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQR 1542
Cdd:COG1196 333 eELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1303-1550 |
8.44e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 8.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1303 AKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKqrrSTEELEVVNSRN 1382
Cdd:TIGR02169 191 LIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEK---LTEEISELEKRL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1383 SEIEELkaiiehLQENQEQLQKAKAEEIEQLHEVIEKLQSELSLMGPTVHEMSDlppgslhtELSCLQAEGMGGQALHNE 1462
Cdd:TIGR02169 268 EEIEQL------LEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKER--------ELEDAEERLAKLEAEIDK 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1463 LQAaqaakgafgqlladhghsqALEALQERLQDaeaaAARHLTELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQR 1542
Cdd:TIGR02169 334 LLA-------------------EIEELEREIEE----ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDY 390
|
....*...
gi 564397520 1543 DLEIDAVN 1550
Cdd:TIGR02169 391 REKLEKLK 398
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1103-1425 |
8.71e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.54 E-value: 8.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1103 KDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSvlwnQKETFTNEAKE 1182
Cdd:TIGR04523 119 KNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKL----NIQKNIDKIKN 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1183 REAALQKEVESLtrdqwesrKQSEKDRATLLSQMRVLE---SELEDQLVQ-HRGCAQLAEEVTTLKQQLATL-DKHLRSQ 1257
Cdd:TIGR04523 195 KLLKLELLLSNL--------KKKIQKNKSLESQISELKkqnNQLKDNIEKkQQEINEKTTEISNTQTQLNQLkDEQNKIK 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1258 RQFMDEQAAEREHERE---------EFQQEIKWLEGQLRQATRPRppgpRDSQCAKLDEEVELLQEKLREKLDGFNELvi 1328
Cdd:TIGR04523 267 KQLSEKQKELEQNNKKikelekqlnQLKSEISDLNNQKEQDWNKE----LKSELKNQEKKLEEIQNQISQNNKIISQL-- 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1329 kkdlaDQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEE-LEVVNSRNSEIEELKAIIEHlQENQEQLQKAKA 1407
Cdd:TIGR04523 341 -----NEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSyKQEIKNLESQINDLESKIQN-QEKLNQQKDEQI 414
|
330
....*....|....*...
gi 564397520 1408 EEIEQLHEVIEKLQSELS 1425
Cdd:TIGR04523 415 KKLQQEKELLEKEIERLK 432
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1061-1426 |
9.43e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 9.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1061 LEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAK-DRLALELHTAEGLLEGFKVEKADLQEALGKK-EESE 1138
Cdd:pfam15921 129 MADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQiEQLRKMMLSHEGVLQEIRSILVDFEEASGKKiYEHD 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1139 QQLIVELEDLRKQLQQASRELLT----LKEENSVLWNQKETFTNEAKER-EAALQK--------------EVESLTRDQW 1199
Cdd:pfam15921 209 SMSTMHFRSLGSAISKILRELDTeisyLKGRIFPVEDQLEALKSESQNKiELLLQQhqdrieqlisehevEITGLTEKAS 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1200 ESRKQSEkdraTLLSQMRVLESELEDQLVQH-RGCAQLAEEVTTLKQQLATLDK-------HLRSQRQFMDEQAAEREHE 1271
Cdd:pfam15921 289 SARSQAN----SIQSQLEIIQEQARNQNSMYmRQLSDLESTVSQLRSELREAKRmyedkieELEKQLVLANSELTEARTE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1272 REEFQQEIKWLEGQLRQATrprppgprdSQCAKLDEEVELLQEKLRE--KLDGFNELVI---KKDLADQQLLIQEEE--I 1344
Cdd:pfam15921 365 RDQFSQESGNLDDQLQKLL---------ADLHKREKELSLEKEQNKRlwDRDTGNSITIdhlRRELDDRNMEVQRLEalL 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564397520 1345 KHLE-ETNENIQRQMAQLQ---EELEKQRRSTEELEvvnsrnSEIEELKAIIEHLQENQEQLQKA-------------KA 1407
Cdd:pfam15921 436 KAMKsECQGQMERQMAAIQgknESLEKVSSLTAQLE------STKEMLRKVVEELTAKKMTLESSertvsdltaslqeKE 509
|
410
....*....|....*....
gi 564397520 1408 EEIEQLHEVIEKLQSELSL 1426
Cdd:pfam15921 510 RAIEATNAEITKLRSRVDL 528
|
|
| |
