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Conserved domains on  [gi|578820601|ref|XP_006718312|]
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cGMP-inhibited 3',5'-cyclic phosphodiesterase 3B isoform X1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CynX super family cl34489
Cyanate permease [Inorganic ion transport and metabolism];
190-263 2.27e-03

Cyanate permease [Inorganic ion transport and metabolism];


The actual alignment was detected with superfamily member COG2807:

Pssm-ID: 442057 [Multi-domain]  Cd Length: 399  Bit Score: 41.01  E-value: 2.27e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578820601 190 PEAAAGRLLLVLSCVGLLLTLAHPL---RLRHCVLVLLLASFVWWVSFTSLGSLPSALRPLLSGLVG-GAGCLLALGL 263
Cdd:COG2807  248 SAATAGLLLSLFQLAGIPGSLLVPLladRLGDRRPLLLLLGLLGLAGLLGLLLAPGSLPWLWAVLLGlGQGGLFPLAL 325
 
Name Accession Description Interval E-value
CynX COG2807
Cyanate permease [Inorganic ion transport and metabolism];
190-263 2.27e-03

Cyanate permease [Inorganic ion transport and metabolism];


Pssm-ID: 442057 [Multi-domain]  Cd Length: 399  Bit Score: 41.01  E-value: 2.27e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578820601 190 PEAAAGRLLLVLSCVGLLLTLAHPL---RLRHCVLVLLLASFVWWVSFTSLGSLPSALRPLLSGLVG-GAGCLLALGL 263
Cdd:COG2807  248 SAATAGLLLSLFQLAGIPGSLLVPLladRLGDRRPLLLLLGLLGLAGLLGLLLAPGSLPWLWAVLLGlGQGGLFPLAL 325
DUF1129 pfam06570
Protein of unknown function (DUF1129); This family consists of several hypothetical bacterial ...
 220-268 7.95e-03

Protein of unknown function (DUF1129); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 429008  Cd Length: 200  Bit Score: 38.41  E-value: 7.95e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 578820601  220 VLVLLLASFVWWVSFTSLGSLPSALRPLLSGLVGGAGCLLALGLDHFFQ 268
Cdd:pfam06570 150 ILILVLSMLVWMALFTLVSLLPPVINPVLPPWVLIVIAAIAFGVRYYLK 198
 
Name Accession Description Interval E-value
CynX COG2807
Cyanate permease [Inorganic ion transport and metabolism];
190-263 2.27e-03

Cyanate permease [Inorganic ion transport and metabolism];


Pssm-ID: 442057 [Multi-domain]  Cd Length: 399  Bit Score: 41.01  E-value: 2.27e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578820601 190 PEAAAGRLLLVLSCVGLLLTLAHPL---RLRHCVLVLLLASFVWWVSFTSLGSLPSALRPLLSGLVG-GAGCLLALGL 263
Cdd:COG2807  248 SAATAGLLLSLFQLAGIPGSLLVPLladRLGDRRPLLLLLGLLGLAGLLGLLLAPGSLPWLWAVLLGlGQGGLFPLAL 325
DUF1129 pfam06570
Protein of unknown function (DUF1129); This family consists of several hypothetical bacterial ...
 220-268 7.95e-03

Protein of unknown function (DUF1129); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 429008  Cd Length: 200  Bit Score: 38.41  E-value: 7.95e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 578820601  220 VLVLLLASFVWWVSFTSLGSLPSALRPLLSGLVGGAGCLLALGLDHFFQ 268
Cdd:pfam06570 150 ILILVLSMLVWMALFTLVSLLPPVINPVLPPWVLIVIAAIAFGVRYYLK 198
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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