|
Name |
Accession |
Description |
Interval |
E-value |
| MEF2_binding |
pfam09047 |
MEF2 binding; The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the ... |
2127-2161 |
1.07e-15 |
|
MEF2 binding; The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the calcineurin-binding protein CABIN 1, adopts an amphipathic alpha-helical structure, which allows it to bind a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription.
Pssm-ID: 370261 [Multi-domain] Cd Length: 35 Bit Score: 72.58 E-value: 1.07e-15
10 20 30
....*....|....*....|....*....|....*
gi 578837048 2127 TLLSPKGSISEETKQKLKSAILSAQSAANVRKESL 2161
Cdd:pfam09047 1 TLLSPKGSISEETKQKLKNAILSAQSAANVKKDSL 35
|
|
| MEF2_binding |
cd13839 |
Mycocyte enhancer factor-2 (MEF2) binding domain of the calcineurin-binding protein cabin-1; ... |
2127-2161 |
5.65e-14 |
|
Mycocyte enhancer factor-2 (MEF2) binding domain of the calcineurin-binding protein cabin-1; The myocyte enhancer factor-2 (MEF2) binding domain, as found in the calcineurin-binding protein cabin-1, adopts an amphipathic alpha-helical structure, which allows it to bind to a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription. Cabin-1 inhibits calcineurin-mediated signal transduction in T-cell receptor-mediated signalling pathways, by binding to the activated form of calcineurin. Cabin-1 acts as a co-repressor of MEF2, the mycocyte enhancer factor-2, which regulates transcription in a calcium-dependent manner and plays vital roles in T-cell development and function.
Pssm-ID: 260103 [Multi-domain] Cd Length: 35 Bit Score: 67.41 E-value: 5.65e-14
10 20 30
....*....|....*....|....*....|....*
gi 578837048 2127 TLLSPKGSISEETKQKLKSAILSAQSAANVRKESL 2161
Cdd:cd13839 1 TLLSPKGSISEETKQKLKNAILSSQSAANVKKDTL 35
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
30-205 |
2.99e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 65.80 E-value: 2.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 30 EAQEAEAFALYHKALDLQKHDRFEESAKAYHELLEasllreavssgdekeglKHPGLilkYSTYKNLAQLAAQREDLETA 109
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALE-----------------LDPDD---AEALYNLGLAYLRLGRYEEA 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 110 MEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKDC 189
Cdd:COG0457 62 LADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP 141
|
170
....*....|....*.
gi 578837048 190 RYSKGLVLKEKIFEEQ 205
Cdd:COG0457 142 DDADALYNLGIALEKL 157
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
34-199 |
5.82e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 61.95 E-value: 5.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 34 AEAFALYHKALDLQkhdrfEESAKAYHELleASLLREAvssGDEKEGLKH--------PGLIlkySTYKNLAQLAAQRED 105
Cdd:COG0457 25 EEAIEDYEKALELD-----PDDAEALYNL--GLAYLRL---GRYEEALADyeqaleldPDDA---EALNNLGLALQALGR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 106 LETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKAL 185
Cdd:COG0457 92 YEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLE 171
|
170
....*....|....
gi 578837048 186 EKDCRYSKGLVLKE 199
Cdd:COG0457 172 AAALAALLAAALGE 185
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1913-2165 |
1.49e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 63.80 E-value: 1.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1913 GAAAQRQASGDTPTTPKHPKDSRENFfpvtVVPTAPDPVPADSvQRPSDAHTKPRPAlaaATTIITCPPSASASTLDQSK 1992
Cdd:PHA03247 2583 TSRARRPDAPPQSARPRAPVDDRGDP----RGPAPPSPLPPDT-HAPDPPPPSPSPA---ANEPDPHPPPTVPPPERPRD 2654
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1993 DPGPPRPHRP-----EATPSMASLGPEG-------EELARVAEGTSFPPQEPRHSPQvkmAPTSSPAEPhcWPAEAALGT 2060
Cdd:PHA03247 2655 DPAPGRVSRPrrarrLGRAAQASSPPQRprrraarPTVGSLTSLADPPPPPPTPEPA---PHALVSATP--LPPGPAAAR 2729
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2061 GAEPTCSQAASSKAPSSGSAQPpeghpgkPEPSRAKSRPLPNMPklviPSAAtkfPPEITVTPPTPTLLSPKGSISEETK 2140
Cdd:PHA03247 2730 QASPALPAAPAPPAVPAGPATP-------GGPARPARPPTTAGP----PAPA---PPAAPAAGPPRRLTRPAVASLSESR 2795
|
250 260
....*....|....*....|....*
gi 578837048 2141 QKLKSAILSAQSAANVRKESLCQPA 2165
Cdd:PHA03247 2796 ESLPSPWDPADPPAAVLAPAAALPP 2820
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
30-188 |
2.22e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 62.70 E-value: 2.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 30 EAQEAEAFALYHKALDLQKHDRFEESAKAYHELLEAsllreavssgdekeglkHPGLilkYSTYKNLAQLAAQREDLETA 109
Cdd:COG3914 72 AALLLLAALLELAALLLQALGRYEEALALYRRALAL-----------------NPDN---AEALFNLGNLLLALGRLEEA 131
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578837048 110 MEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKD 188
Cdd:COG3914 132 LAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
30-205 |
9.70e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 58.97 E-value: 9.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 30 EAQEAEAFALYHKALDLQKHDRFEESAKAYHELLEAS---------LLREAVSSGDEKEGLKHPGLILKYS-----TYKN 95
Cdd:COG2956 70 ERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDpddaealrlLAEIYEQEGDWEKAIEVLERLLKLGpenahAYCE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 96 LAQLAAQREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYT 175
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPE 229
|
170 180 190
....*....|....*....|....*....|
gi 578837048 176 TCLYFICKALEKDCRYSKGLVLKEKIFEEQ 205
Cdd:COG2956 230 EALELLRKALELDPSDDLLLALADLLERKE 259
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1921-2154 |
4.32e-08 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 58.77 E-value: 4.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1921 SGDTPTTPK-HPKDS-RENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGP-- 1996
Cdd:pfam05109 483 SGASPVTPSpSPRDNgTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPav 562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1997 --PRPH------------------RPEAT-PSMASLGPEGEELARVAEGTSFPP---QEPRH----------------SP 2036
Cdd:pfam05109 563 ttPTPNatiptlgktsptsavttpTPNATsPTVGETSPQANTTNHTLGGTSSTPvvtSPPKNatsavttgqhnitsssTS 642
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2037 QVKMAPTS-----SPAEPHCWPAEAALGTGAEPTCSQAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMpklviPSA 2111
Cdd:pfam05109 643 SMSLRPSSisetlSPSTSDNSTSHMPLLTSAHPTGGENITQVTPASTSTHHVSTSSPAPRPGTTSQASGPGN-----SST 717
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 578837048 2112 ATKfPPEITVTPPTPtllsPKGSISEETKQKLKSAILSAQSAA 2154
Cdd:pfam05109 718 STK-PGEVNVTKGTP----PKNATSPQAPSGQKTAVPTVTSTG 755
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1925-2131 |
4.54e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 58.80 E-value: 4.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1925 PTTPKHPKDSRENFFPVTVVPTAPDPVPADS-VQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGPPRPHRPE 2003
Cdd:PHA03247 2629 PSPSPAANEPDPHPPPTVPPPERPRDDPAPGrVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTP 2708
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2004 ATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQAASSKAPSsgSAQPP 2083
Cdd:PHA03247 2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR--RLTRP 2786
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 578837048 2084 EGHPGKPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPPTPTLLSP 2131
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA 2834
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
33-188 |
5.51e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 53.66 E-value: 5.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 33 EAEAFALYHKALDLQKHDRFEESAKAYHELLEASllreavssGDEKEGlkhpglilkystYKNLAQLAAQREDLETAMEF 112
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELD--------PDNPEA------------FALLGEILLQLGDLDEAIVL 60
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 578837048 113 YLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKD 188
Cdd:COG4783 61 LHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1945-2127 |
1.70e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 57.26 E-value: 1.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1945 PTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPP-SASAST-LDQSKD--------PGPPRPHRPEATPSMASlgPE 2014
Cdd:PHA03247 2557 PAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPqSARPRApVDDRGDprgpappsPLPPDTHAPDPPPPSPS--PA 2634
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2015 GEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGT-GAEPTCSQAASSKAPSSGSAQPPEGHPGKPEPS 2093
Cdd:PHA03247 2635 ANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPqRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHA 2714
|
170 180 190
....*....|....*....|....*....|....
gi 578837048 2094 RAKSRPLPNMPKlvIPSAATKFPPEITVTPPTPT 2127
Cdd:PHA03247 2715 LVSATPLPPGPA--AARQASPALPAAPAPPAVPA 2746
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
1914-2154 |
1.80e-07 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 56.12 E-value: 1.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1914 AAAQRQASGDTPTTPKHPKdSRENFFPVTVVPTAPDPV----PADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLD 1989
Cdd:pfam17823 120 SSSPSSAAQSLPAAIAALP-SEAFSAPRAAACRANASAapraAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTA 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1990 QSKDPGPPRPHRPEATPSMASLGPE-GEELARVAEGTSFPPQEPRHSPQVKMAP-------------------TSSPAEP 2049
Cdd:pfam17823 199 ASSAPATLTPARGISTAATATGHPAaGTALAAVGNSSPAAGTVTAAVGTVTPAAlatlaaaagtvasaagtinMGDPHAR 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2050 HCWPAEAAlgtgaePTCSQAASSKAPSSGSAQ----------PPEGHPGKPEPSRAKSRPLPNMPKLVIPS--------- 2110
Cdd:pfam17823 279 RLSPAKHM------PSDTMARNPAAPMGAQAQgpiiqvstdqPVHNTAGEPTPSPSNTTLEPNTPKSVASTnlavvtttk 352
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 578837048 2111 AATKFPPEITVtPPTPTLLSPKGSISEETKQklKSAILSAQSAA 2154
Cdd:pfam17823 353 AQAKEPSASPV-PVLHTSMIPEVEATSPTTQ--PSPLLPTQGAA 393
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1912-2127 |
2.65e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 56.49 E-value: 2.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1912 LGAAAQRQASGDTPTTPKHPKdsrenffpVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQS 1991
Cdd:PHA03247 2695 LTSLADPPPPPPTPEPAPHAL--------VSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGP 2766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1992 KDPGPPRPhrPEATPSMASLGPEGEELARVAEGTSFPPqEPRHSPQVKMAPTssPAEPhcwPAEAALGTGAEPTCSQAAS 2071
Cdd:PHA03247 2767 PAPAPPAA--PAAGPPRRLTRPAVASLSESRESLPSPW-DPADPPAAVLAPA--AALP---PAASPAGPLPPPTSAQPTA 2838
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2072 SKAPS--SGSAQPPEGH--PGKPEPSRAKSRPLPNMPklvipsAATKFPPEITVTPPTPT 2127
Cdd:PHA03247 2839 PPPPPgpPPPSLPLGGSvaPGGDVRRRPPSRSPAAKP------AAPARPPVRRLARPAVS 2892
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1914-2165 |
3.27e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 56.10 E-value: 3.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1914 AAAQRQASGDTPTTPKHPKDSRENFFP----VTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASAS--- 1986
Cdd:PHA03247 2752 GGPARPARPPTTAGPPAPAPPAAPAAGpprrLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLppp 2831
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1987 TLDQSKDPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFP-PQEPRHSPQVKMA------PTSSPAEPHCWPAEAALG 2059
Cdd:PHA03247 2832 TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAkPAAPARPPVRRLArpavsrSTESFALPPDQPERPPQP 2911
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2060 TGAEPTCSQAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPN-MPKLVIPSAATKFPPEITVT-----PPTPTLLSPKG 2133
Cdd:PHA03247 2912 QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEpSGAVPQPWLGALVPGRVAVPrfrvpQPAPSREAPAS 2991
|
250 260 270
....*....|....*....|....*....|..
gi 578837048 2134 SISEETKQKLkSAILSAQSAANVRKESLCQPA 2165
Cdd:PHA03247 2992 STPPLTGHSL-SRVSSWASSLALHEETDPPPV 3022
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1919-2124 |
9.83e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 54.11 E-value: 9.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1919 QASGDT-PTTPKHPKDSRENffPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASA-STLDQSKDPGP 1996
Cdd:PRK12323 367 QSGGGAgPATAAAAPVAQPA--PAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAlAAARQASARGP 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1997 PRPHRPEATPSMAslgPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQAASSKAPS 2076
Cdd:PRK12323 445 GGAPAPAPAPAAA---PAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGW 521
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 578837048 2077 SGSAQPpegHPGKPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPP 2124
Cdd:PRK12323 522 VAESIP---DPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP 566
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
38-188 |
2.78e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.19 E-value: 2.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 38 ALYHKALDLQKHDRFEESAKAYHELLEASLLREAVSSGDEKEGLKHPGLILKYSTYKNLAQLAAQREDLETAMEFYLEAV 117
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 578837048 118 MLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKD 188
Cdd:COG5010 82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
99-188 |
4.30e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.09 E-value: 4.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 99 LAAQREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARhAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCL 178
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|
gi 578837048 179 YFICKALEKD 188
Cdd:COG3063 80 AYLERALELD 89
|
|
| PHA03379 |
PHA03379 |
EBNA-3A; Provisional |
1919-2164 |
6.04e-06 |
|
EBNA-3A; Provisional
Pssm-ID: 223066 [Multi-domain] Cd Length: 935 Bit Score: 51.60 E-value: 6.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1919 QASGDTPTTPKHPKDSrenffPVTVVP----TAPDPVPADSVQRPSDAHTKPRPaLAAATTIITCP-------PSASAST 1987
Cdd:PHA03379 407 KASEPTYGTPRPPVEK-----PRPEVPqsleTATSHGSAQVPEPPPVHDLEPGP-LHDQHSMAPCPvaqlppgPLQDLEP 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1988 LDQskDPGPPRPHRPEATPSMASLGP---EGEELARVAEGTSFPPQEPRHSP-QVKMAPTSSPAEPHC-WPAEAALGTGA 2062
Cdd:PHA03379 481 GDQ--LPGVVQDGRPACAPVPAPAGPivrPWEASLSQVPGVAFAPVMPQPMPvEPVPVPTVALERPVCpAPPLIAMQGPG 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2063 EPTCS-QAASSKAPSSGSAQPPEghpgKPEPSRAKSRPLPNMPKLVIPSAATKF-PPEITVTPPTPTLLSPKGSISEETK 2140
Cdd:PHA03379 559 ETSGIvRVRERWRPAPWTPNPPR----SPSQMSVRDRLARLRAEAQPYQASVEVqPPQLTQVSPQQPMEYPLEPEQQMFP 634
|
250 260 270
....*....|....*....|....*....|.
gi 578837048 2141 QKLKSAILSAQSAANV-------RKESLCQP 2164
Cdd:PHA03379 635 GSPFSQVADVMRAGGVpamqpqyFDLPLQQP 665
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
1923-2167 |
7.47e-06 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 51.22 E-value: 7.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1923 DTPTTPKHP---KDSRENFFPVTVVPTAP---DPVPADSVQRPSdAHTKPRPALAAATTIITCPPSASAstldQSKDPGP 1996
Cdd:PHA03378 607 EPPTTQSHIpetSAPRQWPMPLRPIPMRPlrmQPITFNVLVFPT-PHQPPQVEITPYKPTWTQIGHIPY----QPSPTGA 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1997 PRPHRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSP-------AEPHCWPAEAALGTGAEPtcSQA 2069
Cdd:PHA03378 682 NTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPgrarppaAAPGRARPPAAAPGRARP--PAA 759
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2070 ASSKAPSSGSA-------QPPEGHPGKPEPSRAKSRPLPnmpklvipsaatkfPPEItvtPPTPTLLSPKGSISEETKQK 2142
Cdd:PHA03378 760 APGRARPPAAApgaptpqPPPQAPPAPQQRPRGAPTPQP--------------PPQA---GPTSMQLMPRAAPGQQGPTK 822
|
250 260
....*....|....*....|....*
gi 578837048 2143 LKSAILSAQSAANVRKESLCQPALE 2167
Cdd:PHA03378 823 QILRQLLTGGVKRGRPSLKKPAALE 847
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
1914-2155 |
1.20e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 50.62 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1914 AAAQRQASGDTPTTPKHPKdsrenffPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKD 1993
Cdd:PRK07003 395 AVPAVTAVTGAAGAALAPK-------AAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERD 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1994 PGPPRPHRPEATPSMASLGPegeelarvaegtsfPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQAASSK 2073
Cdd:PRK07003 468 AQPPADSGSASAPASDAPPD--------------AAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEAR 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2074 APSSGSAQPPEGHPGKPEP-----------SRAKSRPLPNMPKLVIPSAATKFPPEITVTPPTPTLLSPKGSiseeTKQK 2142
Cdd:PRK07003 534 PPTPAAAAPAARAGGAAAAldvlrnagmrvSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAAT----GDAP 609
|
250
....*....|...
gi 578837048 2143 LKSAILSAQSAAN 2155
Cdd:PRK07003 610 PNGAARAEQAAES 622
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1913-2138 |
1.34e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 50.55 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1913 GAAAQRQASGDTPTTPKHPKDSREnfFPVTVVPTAPDPVPADSVQRPSDahtkprPALAAATtiitcPPSASASTLDQSK 1992
Cdd:PHA03307 76 GTEAPANESRSTPTWSLSTLAPAS--PAREGSPTPPGPSSPDPPPPTPP------PASPPPS-----PAPDLSEMLRPVG 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1993 DPGPPRPHRPEATPSMASLGPEGEE-------LARVAEGTSFPPQEPRHSPQVKMAP---TSSPAEPHCWPAEAALGTGA 2062
Cdd:PHA03307 143 SPGPPPAASPPAAGASPAAVASDAAssrqaalPLSSPEETARAPSSPPAEPPPSTPPaaaSPRPPRRSSPISASASSPAP 222
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 578837048 2063 EPTCSQAAS-SKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMPKLVIPSAATKFPPeitvtPPTPTLLSPKGSISEE 2138
Cdd:PHA03307 223 APGRSAADDaGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGP-----SSRPGPASSSSSPRER 294
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
29-174 |
1.52e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 48.37 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 29 KEAQEAEAFALYHKALDLQKHDRF-----EESAKAYHELLEASLLREAVSSGDEK--EGLKHPGLIlkySTYKNLAQLAA 101
Cdd:COG4785 8 LLLALALAAAAASKAAILLAALLFaavlaLAIALADLALALAAAALAAAALAAERidRALALPDLA---QLYYERGVAYD 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 578837048 102 QREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDY 174
Cdd:COG4785 85 SLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRY 157
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
95-174 |
2.15e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.15 E-value: 2.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 95 NLAQLAAQREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDY 174
Cdd:COG4235 22 LLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1958-2139 |
2.16e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 49.87 E-value: 2.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1958 RPSDAHTKPRPALAAATTIITCPPSASASTldqskdPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFPPQEP----R 2033
Cdd:PRK12323 364 RPGQSGGGAGPATAAAAPVAQPAPAAAAPA------AAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAlaaaR 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2034 HSPQVKMAPTSSPAephcwPAEAALGTGAEPTCSQAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMPklvipsaat 2113
Cdd:PRK12323 438 QASARGPGGAPAPA-----PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELP--------- 503
|
170 180
....*....|....*....|....*.
gi 578837048 2114 kfpPEITVTPPTPTLLSPKGSISEET 2139
Cdd:PRK12323 504 ---PEFASPAPAQPDAAPAGWVAESI 526
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
1908-2128 |
2.70e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 49.60 E-value: 2.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1908 CQVHLGAAAQRQASGDTPTTPKHPKDSRENffpvTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTiiTCPPSASAST 1987
Cdd:PRK07764 582 WQVEAVVGPAPGAAGGEGPPAPASSGPPEE----AARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAP--GVAAPEHHPK 655
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1988 LDQSKDPGPPRPHRPEATPSMASLGPEGEelarvaegtsfPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPT-C 2066
Cdd:PRK07764 656 HVAVPDASDGGDGWPAKAGGAAPAAPPPA-----------PAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPqA 724
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 578837048 2067 SQAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPPTPTL 2128
Cdd:PRK07764 725 AQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMA 786
|
|
| PHA03269 |
PHA03269 |
envelope glycoprotein C; Provisional |
1948-2108 |
2.75e-05 |
|
envelope glycoprotein C; Provisional
Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 49.34 E-value: 2.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1948 PDPVPADSVQrpsdAHTKPRPALAAATTIITCPPSASASTLDQSKDPGP-PRPHrpeatpSMASLGPEgeelarvaegts 2026
Cdd:PHA03269 40 PDPAPAPHQA----ASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPaPAPH------QAASRAPD------------ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2027 fppqePRHSPQVKMAPTSSPAEPhcwPAEAALGTGAEPTCSQAASSKAPSsgsaqpPEGHPGKPEPSRAKSRPLPNMPKL 2106
Cdd:PHA03269 98 -----PAVAPQLAAAPKPDAAEA---FTSAAQAHEAPADAGTSAASKKPD------PAAHTQHSPPPFAYTRSMEHIACT 163
|
..
gi 578837048 2107 VI 2108
Cdd:PHA03269 164 HG 165
|
|
| PHA02682 |
PHA02682 |
ORF080 virion core protein; Provisional |
1940-2046 |
4.03e-05 |
|
ORF080 virion core protein; Provisional
Pssm-ID: 177464 [Multi-domain] Cd Length: 280 Bit Score: 47.93 E-value: 4.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1940 PVTVVPTAPDP-VPADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGPPRPHR--PEAT------PSMAS 2010
Cdd:PHA02682 76 PSGQSPLAPSPaCAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPacPPSTrqcppaPPLPT 155
|
90 100 110
....*....|....*....|....*....|....*..
gi 578837048 2011 LGPEGEELARVAEGTSFPPQEPRHS-PQVKMAPTSSP 2046
Cdd:PHA02682 156 PKPAPAAKPIFLHNQLPPPDYPAAScPTIETAPAASP 192
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1920-2157 |
4.69e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 49.01 E-value: 4.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1920 ASGDTPTTPKHPKDSRENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATT--IITCPPSASA----STLDQSKD 1993
Cdd:PHA03307 124 ASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPeeTARAPSSPPAepppSTPPAAAS 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1994 PGPPRPHRPEATPSM--ASLGPEGEELARVAEGTSFPPQE------------PRHSPQVKMAPT---------------- 2043
Cdd:PHA03307 204 PRPPRRSSPISASASspAPAPGRSAADDAGASSSDSSSSEssgcgwgpenecPLPRPAPITLPTriweasgwngpssrpg 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2044 -----SSPAEPHCWPAEAALGTGAEPTCSQAASSKAPS--SGSAQPPEGHPGK--------PEPSRAKSRPLPNmpklvi 2108
Cdd:PHA03307 284 passsSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSreSSSSSTSSSSESSrgaavspgPSPSRSPSPSRPP------ 357
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 578837048 2109 PSAATKFPPE-ITVTPPTPTLLSPKGSISEETKQKLKSAILSAQSAANVR 2157
Cdd:PHA03307 358 PPADPSSPRKrPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRF 407
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1-155 |
4.89e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.72 E-value: 4.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1 MIRIAALNASSTIEDDHEGSFKSHKTQTKEAQEAEAFALYHKALDLQKhdRFEESAKAYHELLEAsllreavssgdekeg 80
Cdd:COG5010 21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLG--DFEESLALLEQALQL--------------- 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 578837048 81 lkHPGlilKYSTYKNLAQLAAQREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNP 155
Cdd:COG5010 84 --DPN---NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
1942-2132 |
5.75e-05 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 48.28 E-value: 5.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1942 TVVPTAPDPVPADSVQRPSDAHTKPRPAlaaattiitcpPSASASTLDQSKDPGPPRPHRPEATPSMASLGPEGEELARV 2021
Cdd:PRK14086 91 SAGEPAPPPPHARRTSEPELPRPGRRPY-----------EGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEPGAWP 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2022 AEGTSFPPQEPRH---SPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQ-----AASSKAPSSGSAQPPEGHPGKPEPS 2093
Cdd:PRK14086 160 RAADDYGWQQQRLgfpPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRdydhpRPDWDRPRRDRTDRPEPPPGAGHVH 239
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 578837048 2094 RAkSRPLPNMPKLVIPSAATKFP------PEITVTPPTPTL-LSPK 2132
Cdd:PRK14086 240 RG-GPGPPERDDAPVVPIRPSAPgplaaqPAPAPGPGEPTArLNPK 284
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
1914-2084 |
6.69e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 48.06 E-value: 6.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1914 AAAQRQASGDTPTTPKHPKDSRENFFPVTVVPTAPDPVPaDSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKD 1993
Cdd:PRK07764 622 AAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVP-DASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQ 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1994 PGPPRPHRP------EATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCS 2067
Cdd:PRK07764 701 PAPAPAATPpagqadDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPS 780
|
170
....*....|....*..
gi 578837048 2068 QAASSKAPSSGSAQPPE 2084
Cdd:PRK07764 781 EEEEMAEDDAPSMDDED 797
|
|
| PHA03381 |
PHA03381 |
tegument protein VP22; Provisional |
1931-2074 |
7.92e-05 |
|
tegument protein VP22; Provisional
Pssm-ID: 177618 [Multi-domain] Cd Length: 290 Bit Score: 46.93 E-value: 7.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1931 PKDSRENFFPVTVVPTAPDPVPAD-SVQRPSDAHTKPRPALAAAT----------TIITCPPSASASTLDQSKDPGPPRP 1999
Cdd:PHA03381 11 PHGTDEVEADVYYDFISPDASPARvSFEEPADRARRGAGQARGRSqaerrfhhydEARADYPYYTGSSSEDERPADPRPS 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578837048 2000 HRPEATPSM----ASLGPEGEELARVAEGTSFPPqEPRHSPQVKMAPTSSPAEPHCwPAEAALGTGAEPTCSQAASSKA 2074
Cdd:PHA03381 91 RRPHAQPEAsgpgPARGARGPAGSRGRGRRAESP-SPRDPPNPKGASAPRGRKSAC-ADSAALLDAPAPAAPKRQKTPA 167
|
|
| PRK13863 |
PRK13863 |
T-DNA border endonuclease VirD2; |
1909-2098 |
8.65e-05 |
|
T-DNA border endonuclease VirD2;
Pssm-ID: 237533 [Multi-domain] Cd Length: 446 Bit Score: 47.63 E-value: 8.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1909 QVHLGAAAQRQASGDTPTTPKHPKDSRENFFPVTVVPTA-----PDPVPADSVQRPSDAHTKPRPALAAATtiitcppsa 1983
Cdd:PRK13863 258 EVRLQEPAGSSIKADARIRVSLESERRAQPSASKIPVADdfgieTSYVAEGDVRKLEGNSGTPRLATEVAT--------- 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1984 sASTLDQSkdPGPPRPHRPEATPSMASLGpegeELARVAEGTSFPPQEP--RHSPQVKMAPTSSPAEPHCwPAEAALGTG 2061
Cdd:PRK13863 329 -HTTSERQ--QRRKRPRDDEGEPSGAKRT----RLNGIAVGPEANAGEQdgRDDPITSPAQPPRSNPLAD-PVRASIATD 400
|
170 180 190
....*....|....*....|....*....|....*..
gi 578837048 2062 AEPTCSQAASSKAPSSGSAQPPEGHPGKPEPSRAKSR 2098
Cdd:PRK13863 401 SLPATADRQQQREPSSKRPRDDDGEPSIRKRARDGRS 437
|
|
| PLN03209 |
PLN03209 |
translocon at the inner envelope of chloroplast subunit 62; Provisional |
1928-2131 |
1.06e-04 |
|
translocon at the inner envelope of chloroplast subunit 62; Provisional
Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 47.23 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1928 PKHPkDSRENFFPVTVVPTAPD-PVPADSVQRPSDAHTKPRPA--------LAAATTIITCPPS---ASASTLDQSKDPG 1995
Cdd:PLN03209 330 PKES-DAADGPKPVPTKPVTPEaPSPPIEEEPPQPKAVVPRPLspytayedLKPPTSPIPTPPSsspASSKSVDAVAKPA 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1996 PPRPH-RPEATPSMASLGPEGEELARVAEGTSF-------PPQEPRHSPQVKMAPTSS-----PAEPHCWPAEAALGTGA 2062
Cdd:PLN03209 409 EPDVVpSPGSASNVPEVEPAQVEAKKTRPLSPYaryedlkPPTSPSPTAPTGVSPSVSstssvPAVPDTAPATAATDAAA 488
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2063 EPTCSQAASSKAPSSGSAQPPEG-HPGKPEPSRAKSRPlPNMPKLVIPSAATKFPPEITVTPPTPTLLSP 2131
Cdd:PLN03209 489 PPPANMRPLSPYAVYDDLKPPTSpSPAAPVGKVAPSST-NEVVKVGNSAPPTALADEQHHAQPKPRPLSP 557
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
1941-2126 |
1.55e-04 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 46.91 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1941 VTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSA-----SASTLDQSKDPGPPRPhRPEATPSMASLGPEG 2015
Cdd:PRK12727 62 TPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAaedmiAAMALRQPVSVPRQAP-AAAPVRAASIPSPAA 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2016 EELARVAEGTSFPPQE----PRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQAASSKAPSSGSAQPPEGHPG-KP 2090
Cdd:PRK12727 141 QALAHAAAVRTAPRQEhalsAVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGfDL 220
|
170 180 190
....*....|....*....|....*....|....*.
gi 578837048 2091 EPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPPTP 2126
Cdd:PRK12727 221 DDALPQILPPAALPPIVVAPAAPAALAAVAAAAPAP 256
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1940-2136 |
1.92e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 46.70 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1940 PVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAA-----TTIITCPPSASASTLDQSKDPGPpRPHRPEATPSMASLGPE 2014
Cdd:PHA03307 25 PATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGaaacdRFEPPTGPPPGPGTEAPANESRS-TPTWSLSTLAPASPARE 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2015 GEELARVAEGTSFPPQ-EPRHSPqvkmAPTSSPAEPHCWPAEAALGTGAeptcsqAASSKAPSSGSAQPPEGHPGKPEPS 2093
Cdd:PHA03307 104 GSPTPPGPSSPDPPPPtPPPASP----PPSPAPDLSEMLRPVGSPGPPP------AASPPAAGASPAAVASDAASSRQAA 173
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 578837048 2094 RAKSRPLPNMPKLVIPSAATKFPPEITVTPPTPTLLSPKGSIS 2136
Cdd:PHA03307 174 LPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISAS 216
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
1908-2132 |
2.12e-04 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 46.68 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1908 CQVHLGAAAQRQASGDTPTTPKHPKDSREnffPVTVVPTAPDPV--PADSVQRPSDAHTKPRPALAAATTIITCPPsasa 1985
Cdd:pfam03154 184 PSPPPPGTTQAATAGPTPSAPSVPPQGSP---ATSQPPNQTQSTaaPHTLIQQTPTLHPQRLPSPHPPLQPMTQPP---- 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1986 stldqskdpgPPRPHRPEATPSMASLGPegeelarvaegtsFPPQEprHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPT 2065
Cdd:pfam03154 257 ----------PPSQVSPQPLPQPSLHGQ-------------MPPMP--HSLQTGPSHMQHPVPPQPFPLTPQSSQSQVPP 311
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578837048 2066 CSQAASSKAPSSGSAQPP-EGHPGKPEPSRakSRPLPNMPkLVIPSAAtkfPPEITVTPPTPTLLSPK 2132
Cdd:pfam03154 312 GPSPAAPGQSQQRIHTPPsQSQLQSQQPPR--EQPLPPAP-LSMPHIK---PPPTTPIPQLPNPQSHK 373
|
|
| PspC_subgroup_2 |
NF033839 |
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
1892-2126 |
2.15e-04 |
|
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 46.30 E-value: 2.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1892 IKQVDEEAALEQAVKFCQVHLGAAAQRQASGDTPTTPKHPKDSRenffpvtvvPTAPDPvpadsvqrpsdaHTKPRPALA 1971
Cdd:NF033839 248 IDNVNTKVEIENTVHKIFADMDAVVTKFKKGLTQDTPKEPGNKK---------PSAPKP------------GMQPSPQPE 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1972 AAttiitcPPSASASTLDQSKDPGPPRPhRPEATPSmaslgPEGEElarvaegTSFPPQEPRHSPQVKMAPTSSPAEPHC 2051
Cdd:NF033839 307 KK------EVKPEPETPKPEVKPQLEKP-KPEVKPQ-----PEKPK-------PEVKPQLETPKPEVKPQPEKPKPEVKP 367
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 578837048 2052 WPAEAALGTGAEPTCSQAASSKAPSsgsAQPPEGHPgKPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPPTP 2126
Cdd:NF033839 368 QPEKPKPEVKPQPETPKPEVKPQPE---KPKPEVKP-QPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKP 438
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1913-2100 |
2.67e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 46.47 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1913 GAAAQRQASGD---TPTTPKHPKDSRENFFPVTvVPTAPDPVPADSVQRPSdahtkprpalaaattiitcPPSASASTLD 1989
Cdd:PHA03247 2860 GDVRRRPPSRSpaaKPAAPARPPVRRLARPAVS-RSTESFALPPDQPERPP-------------------QPQAPPPPQP 2919
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1990 QSKDPGPPRPHRPEATPSMaslgpegeelarvaegtsfPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEP--TCS 2067
Cdd:PHA03247 2920 QPQPPPPPQPQPPPPPPPR-------------------PQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPrfRVP 2980
|
170 180 190
....*....|....*....|....*....|...
gi 578837048 2068 QAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPL 2100
Cdd:PHA03247 2981 QPAPSREAPASSTPPLTGHSLSRVSSWASSLAL 3013
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1936-2092 |
3.10e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 46.32 E-value: 3.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1936 ENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAattiitcPPSASASTLDQSKDPGPPrphrPEATPSMASLGP-E 2014
Cdd:PHA03307 62 CDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPA-------SPAREGSPTPPGPSSPDP----PPPTPPPASPPPsP 130
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578837048 2015 GEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQAASSKAPSSGSAQPPEGHPGKPEP 2092
Cdd:PHA03307 131 APDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPR 208
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1952-2155 |
3.19e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 46.02 E-value: 3.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1952 PADSVQRPSDAhtkPRPALAAATTIITCPPSASASTLDQSKDPGPPRPHR---PEATPSMASLGPEGEELARVAEGTSFP 2028
Cdd:PRK12323 374 PATAAAAPVAQ---PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAaapARRSPAPEALAAARQASARGPGGAPAP 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2029 PQEPRHSPqvkmAPTSSPAEPHcwPAEAALGTGAEPTCSQAASSKAPSSGSAQPPEGHPGK-PEPSRAKSRPLPNM---- 2103
Cdd:PRK12323 451 APAPAAAP----AAAARPAAAG--PRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEfASPAPAQPDAAPAGwvae 524
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 578837048 2104 ----PKLVIPSAATKFPPEITVTPPTPTLLSPKGSISEETKQKLKSAILSAQSAAN 2155
Cdd:PRK12323 525 sipdPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGD 580
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
1893-2140 |
5.51e-04 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 45.46 E-value: 5.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1893 KQVDEEAALEQAVKfcqvhlGAAAQRQA---SGDTPTTPKHPK-DSRENFFPVT--VVPTAPDPVPADSVQRPSDAHTkP 1966
Cdd:PRK10263 270 KRMDDDEEITYTAR------GVAADPDDvlfSGNRATQPEYDEyDPLLNGAPITepVAVAAAATTATQSWAAPVEPVT-Q 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1967 RPALAAATTIITCPpsasasTLDQSKDPGPprpHRPEatPSMAslgPEGEELARVAEGTSfpPQEPRHSPQVKMAPTSSP 2046
Cdd:PRK10263 343 TPPVASVDVPPAQP------TVAWQPVPGP---QTGE--PVIA---PAPEGYPQQSQYAQ--PAVQYNEPLQQPVQPQQP 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2047 AEPHCWPAEAALGTGAePTCSQAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPN-MPKLVIPSAATKFPPEITVTPPT 2125
Cdd:PRK10263 407 YYAPAAEQPAQQPYYA-PAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTyQTEQTYQQPAAQEPLYQQPQPVE 485
|
250
....*....|....*
gi 578837048 2126 PTLLSPKGSISEETK 2140
Cdd:PRK10263 486 QQPVVEPEPVVEETK 500
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
92-158 |
6.23e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.92 E-value: 6.23e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 578837048 92 TYKNLAQLAAQREDLETAMEFyLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHW 158
Cdd:COG3063 28 ALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1915-2099 |
6.29e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 44.87 E-value: 6.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1915 AAQRQASGDTPTTPKHPKDSRENFFPVTVVPTAPDPVPA------DSVQRPSDAHTKPRPALAAATTIITCPPSASASTL 1988
Cdd:PRK12323 393 AAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEalaaarQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPV 472
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1989 DQSKDPGPPRPHRPEATPSMASLGPEGEELarvaegtsfPPQEPRHSP-QVKMAPTSSPAEPHCWPAEAALGTGAEPTCS 2067
Cdd:PRK12323 473 AAAAAAAPARAAPAAAPAPADDDPPPWEEL---------PPEFASPAPaQPDAAPAGWVAESIPDPATADPDDAFETLAP 543
|
170 180 190
....*....|....*....|....*....|..
gi 578837048 2068 QAASSKAPSSGSAQPPEGHPGKPEPSRAKSRP 2099
Cdd:PRK12323 544 APAAAPAPRAAAATEPVVAPRPPRASASGLPD 575
|
|
| sucB |
TIGR01347 |
2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This ... |
2015-2121 |
6.52e-04 |
|
2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase. [Energy metabolism, TCA cycle]
Pssm-ID: 273565 [Multi-domain] Cd Length: 403 Bit Score: 44.34 E-value: 6.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2015 GEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHcwPAEAALGTGAEPTCSQAASSKAPSsgSAQPPEGHPG------ 2088
Cdd:TIGR01347 68 GQVLAILEEGNDATAAPPAKSGEEKEETPAASAAAA--PTAAANRPSLSPAARRLAKEHGID--LSAVPGTGVTgrvtke 143
|
90 100 110
....*....|....*....|....*....|....*.
gi 578837048 2089 ---KPEPSRAKSRPLPNMPKLVIPSAATKfpPEITV 2121
Cdd:TIGR01347 144 diiKKTEAPASAQPPAAAAAAAAPAAATR--PEERV 177
|
|
| PHA03325 |
PHA03325 |
nuclear-egress-membrane-like protein; Provisional |
1983-2134 |
8.30e-04 |
|
nuclear-egress-membrane-like protein; Provisional
Pssm-ID: 223044 Cd Length: 418 Bit Score: 44.10 E-value: 8.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1983 ASASTLDQSKDPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQ-----VKMAPTSSPAEPhcwPAEAA 2057
Cdd:PHA03325 259 SSAFMLNSSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPPppvrrPRVKHPEAGKEE---PDGAR 335
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 578837048 2058 LGTGAEPTCSqAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMPKLVIPsaATKFPPEITVTPPTPTLLSPKGS 2134
Cdd:PHA03325 336 NAEAKEPAQP-ATSTSSKGSSSAQNKDSGSTGPGSSLAAASSFLEDDDFGSP--PLDLTTSLRHMPSPSVTSAPEPP 409
|
|
| PHA03379 |
PHA03379 |
EBNA-3A; Provisional |
1924-2135 |
9.08e-04 |
|
EBNA-3A; Provisional
Pssm-ID: 223066 [Multi-domain] Cd Length: 935 Bit Score: 44.66 E-value: 9.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1924 TPTTPKHPKDSRENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIitcpPSASASTLDQSKDPGPPRPHRPe 2003
Cdd:PHA03379 473 GPLQDLEPGDQLPGVVQDGRPACAPVPAPAGPIVRPWEASLSQVPGVAFAPVM----PQPMPVEPVPVPTVALERPVCP- 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2004 ATPSMASLGP-EGEELARVAE---GTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTgaEPTCSQAASSKAPSSGS 2079
Cdd:PHA03379 548 APPLIAMQGPgETSGIVRVRErwrPAPWTPNPPRSPSQMSVRDRLARLRAEAQPYQASVEV--QPPQLTQVSPQQPMEYP 625
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 578837048 2080 AQPPEG-HPGKPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPPTPTLLSPKGSI 2135
Cdd:PHA03379 626 LEPEQQmFPGSPFSQVADVMRAGGVPAMQPQYFDLPLQQPISQGAPLAPLRASMGPV 682
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1895-2084 |
1.05e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 44.10 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1895 VDEEAALEQAVKFCQVHLGAAAQRQASGDTPTTPKHPKDSRENFFPVTVVPTAPDPVPADS-----VQRPSDAHTKPRPA 1969
Cdd:PRK12323 395 AAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAaapaaAARPAAAGPRPVAA 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1970 LAAATTIITCPPSASAStldqSKDPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFPP--QEPRHSPQVKMAPTSSPA 2047
Cdd:PRK12323 475 AAAAAPARAAPAAAPAP----ADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPAtaDPDDAFETLAPAPAAAPA 550
|
170 180 190
....*....|....*....|....*....|....*..
gi 578837048 2048 EphcwPAEAALGTGAEPTCSQAASSKAPSSGSAQPPE 2084
Cdd:PRK12323 551 P----RAAAATEPVVAPRPPRASASGLPDMFDGDWPA 583
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1741-2128 |
1.49e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.16 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1741 ADQSGERKDKESPRAGPTEPmdTSEATVCH-SDLERTPPllPGRPardrgPESRPTELS----LEELSISARQQ--PTPL 1813
Cdd:PHA03247 2667 ARRLGRAAQASSPPQRPRRR--AARPTVGSlTSLADPPP--PPPT-----PEPAPHALVsatpLPPGPAAARQAspALPA 2737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1814 TPAQPAPAPAPATTTGTRAGGHPEEPLSRLSrkrklledtesgktllldayrvwqqgqkgvaydlgrverimsetymlik 1893
Cdd:PHA03247 2738 APAPPAVPAGPATPGGPARPARPPTTAGPPA------------------------------------------------- 2768
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1894 qvdeeaaleqavkfcqvhlGAAAQRQASGDTPTTPKHPKDSRENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAA 1973
Cdd:PHA03247 2769 -------------------PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLP 2829
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1974 TTIITCP--------PSASASTLDQSKDPGPP----RPHRPEATPSMASLGPEGEELARVA-----EGTSFPPQEPRHSP 2036
Cdd:PHA03247 2830 PPTSAQPtapppppgPPPPSLPLGGSVAPGGDvrrrPPSRSPAAKPAAPARPPVRRLARPAvsrstESFALPPDQPERPP 2909
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2037 QVKMAPTSSPAEPhcwPAEAALGTGAEPTCSQAASSKAPSSGSAQPPEGHPGKPEPSRAKSRP-LPNMPKLVIPSAAtkf 2115
Cdd:PHA03247 2910 QPQAPPPPQPQPQ---PPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPgRVAVPRFRVPQPA--- 2983
|
410
....*....|...
gi 578837048 2116 PPEITVTPPTPTL 2128
Cdd:PHA03247 2984 PSREAPASSTPPL 2996
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
1956-2126 |
1.62e-03 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 43.60 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1956 VQRPSDAHTKPRPALAAATTIITCPPSASASTLD-QSKDPGPPRPHRPEATPSMASLGPEGEELarvaegtsFPPQEPR- 2033
Cdd:pfam03154 174 LQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPpQGSPATSQPPNQTQSTAAPHTLIQQTPTL--------HPQRLPSp 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2034 HSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNmPKLVIPSAAT 2113
Cdd:pfam03154 246 HPPLQPMTQPPPPSQVSPQPLPQPSLHGQMPPMPHSLQTGPSHMQHPVPPQPFPLTPQSSQSQVPPGPS-PAAPGQSQQR 324
|
170
....*....|...
gi 578837048 2114 KFPPEITVTPPTP 2126
Cdd:pfam03154 325 IHTPPSQSQLQSQ 337
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
1949-2133 |
1.75e-03 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 43.43 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1949 DPVPADSVQRPSDAHTKPRPALAAATTIitcppsASASTLDQSKDPGPP-RPHRPEATPSMASLGPEGEELARVAEGTSF 2027
Cdd:PRK13108 281 APGALRGSEYVVDEALEREPAELAAAAV------ASAASAVGPVGPGEPnQPDDVAEAVKAEVAEVTDEVAAESVVQVAD 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2028 PPQEPRHSPQVKMAPTSSPAEPHCWPAEAAlgtgAEPTCSQAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMPKlv 2107
Cdd:PRK13108 355 RDGESTPAVEETSEADIEREQPGDLAGQAP----AAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAK-- 428
|
170 180
....*....|....*....|....*.
gi 578837048 2108 ipsaatkfPPEITVTPPTPTLLSPKG 2133
Cdd:PRK13108 429 --------PDELAVAGPGDDPAEPDG 446
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1682-2134 |
1.85e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 43.62 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1682 PGARMTTDVSHKASPEDGQEGLPQPKKPPLADGSGPGPEPGGKvgLLNHRPVAMDAGDSADQSGERKDKESPRAGPTEpm 1761
Cdd:PHA03307 49 ELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWS--LSTLAPASPAREGSPTPPGPSSPDPPPPTPPPA-- 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1762 dtseatvchSDLERTPPLLPGrPARDRGPESRPTELSLEELSISARQQPTPLTPAQPAPAPAPATTTGTRAGGHPEEPLs 1841
Cdd:PHA03307 125 ---------SPPPSPAPDLSE-MLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEP- 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1842 RLSRKRKLLEDTESGKtllldaYRVWQQGQKGVAYDLGRVERimsetymlikqVDEEAALEQAVKFCQVHLGAAAQRQAS 1921
Cdd:PHA03307 194 PPSTPPAAASPRPPRR------SSPISASASSPAPAPGRSAA-----------DDAGASSSDSSSSESSGCGWGPENECP 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1922 GDTPTTPKHPKDSREnffPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGPPRPHR 2001
Cdd:PHA03307 257 LPRPAPITLPTRIWE---ASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSS 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2002 PEATPSMASLGPEGEELARvaegtsfpPQEPRHSPQVKMAPTSSPAEPhcwpaeaalgtgAEPTCSQAASSKAPSSGSAQ 2081
Cdd:PHA03307 334 ESSRGAAVSPGPSPSRSPS--------PSRPPPPADPSSPRKRPRPSR------------APSSPAASAGRPTRRRARAA 393
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 578837048 2082 PPEghpgkPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPPtptLLSPKGS 2134
Cdd:PHA03307 394 VAG-----RARRRDATGRFPAGRPRPSPLDAGAASGAFYARYP---LLTPSGE 438
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
36-119 |
1.99e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.91 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 36 AFALYHKALDLQKHDRFEESAKAYHELLEaslLREAVSSGDekeglkHPGLILkysTYKNLAQLAAQREDLETAMEFYLE 115
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALE---IARRLLGPD------HPLTAT---TLLNLGRLYLELGRYEEALELLER 70
|
....
gi 578837048 116 AVML 119
Cdd:pfam13424 71 ALAL 74
|
|
| PHA03291 |
PHA03291 |
envelope glycoprotein I; Provisional |
1938-2132 |
2.61e-03 |
|
envelope glycoprotein I; Provisional
Pssm-ID: 223033 [Multi-domain] Cd Length: 401 Bit Score: 42.63 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1938 FFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTiiTCPPSASASTLDQSKDPGPPRPHRPEATPSMASLGPEGEE 2017
Cdd:PHA03291 203 FVPATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPST--TIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPEASR 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2018 -----------------LARVAEGTSF-----PPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGT-GAEptcsqaasska 2074
Cdd:PHA03291 281 yeltvtqiiqiaipasiIACVFLGSCAcclhrRCRRRRRRPARIYRPPSPVAPSISAVNEAALARlGDE----------- 349
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 578837048 2075 pssgsaqpPEGHPGKPePSRAKSRPLPN-MPKLVIPSAATKFP--PEITVTPPTPTLLSPK 2132
Cdd:PHA03291 350 --------LKRHPPES-PRRSKRRSSQTmVPSLTAISEESEAPavVELSRSPRRPGGPTAR 401
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1969-2141 |
3.09e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 42.85 E-value: 3.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1969 ALAAATTIITCPPSASAstlDQSKDP--GPPRPHRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHspqvkMAPTSSP 2046
Cdd:PHA03307 13 AAAEGGEFFPRPPATPG---DAADDLlsGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGT-----EAPANES 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2047 AEPHCWPAEAALGTGAEPTCSQAASSkaPSSGSAQPPEGHPGKPEPSRA-------KSRPLPNMPKLVIPSAATKFPPEI 2119
Cdd:PHA03307 85 RSTPTWSLSTLAPASPAREGSPTPPG--PSSPDPPPPTPPPASPPPSPApdlsemlRPVGSPGPPPAASPPAAGASPAAV 162
|
170 180
....*....|....*....|..
gi 578837048 2120 TVTPPTPTLLSPKGSISEETKQ 2141
Cdd:PHA03307 163 ASDAASSRQAALPLSSPEETAR 184
|
|
| TPR_21 |
pfam09976 |
Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat. |
48-151 |
3.54e-03 |
|
Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat.
Pssm-ID: 430959 [Multi-domain] Cd Length: 194 Bit Score: 41.03 E-value: 3.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 48 KHDRFEESAKAYHELLEAsllreaVSSGDEKEGL--------KHPGlilkySTYKNLAQL-----AAQREDLETAMEfYL 114
Cdd:pfam09976 32 QRSQAEEASALYQQLLEA------VAAGDAAKAQaaaaqlkdEYGG-----TGYAALAALllakaAVEAGDLAAAKA-QL 99
|
90 100 110
....*....|....*....|....*....|....*...
gi 578837048 115 EAVMLDSTDVNLwykiGHVA-LRLIRIPLARHAFEEGL 151
Cdd:pfam09976 100 EWVADNAKDEAL----KALArLRLARVLLAQGKYDEAL 133
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
34-174 |
3.98e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 41.64 E-value: 3.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 34 AEAFALYHKALDLQKHDRFEESAKAYHELLEasllreavssgdekeglKHPGLIlkySTYKNLAQLAAQREDLETAMEFY 113
Cdd:COG2956 6 AAALGWYFKGLNYLLNGQPDKAIDLLEEALE-----------------LDPETV---EAHLALGNLYRRRGEYDRAIRIH 65
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 578837048 114 LEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDY 174
Cdd:COG2956 66 QKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDW 126
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
1958-2088 |
4.37e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 42.01 E-value: 4.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1958 RPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGPPRPhRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQ 2037
Cdd:PRK14951 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA-PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPA 443
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 578837048 2038 VKMAPTSSPAEPHCWPAEAALGTGAEPTCSQAASSKAPSSGSAQPPEGHPG 2088
Cdd:PRK14951 444 AVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEG 494
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
1967-2165 |
4.44e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 42.01 E-value: 4.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1967 RPALAAATtiitcPPSASASTldqskdpgpprPHRPEATPSMASlgpegeelarvaegtsfpPQEPRHSPQVKMAPTSSP 2046
Cdd:PRK14951 365 KPAAAAEA-----AAPAEKKT-----------PARPEAAAPAAA------------------PVAQAAAAPAPAAAPAAA 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2047 AEPHCWPAEAALGTGAEPTCSQAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMPKLVIPSAAtkfPPEITVTPPTP 2126
Cdd:PRK14951 411 ASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAA---PAPAAAPAAAR 487
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 578837048 2127 TLLSPKGSISEETKQKLKSAI--------LSAQS---AAN-------VRKESLCQPA 2165
Cdd:PRK14951 488 LTPTEEGDVWHATVQQLAAAEaitalareLALQSelvARDgdqwllrVERESLNQPG 544
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
1916-2048 |
4.47e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 42.07 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1916 AQRQASGDTPTTPKHPKDSRENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASA---------- 1985
Cdd:PRK14971 360 AQLTQKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVdppaavpvnp 439
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 578837048 1986 -STLDQSKDPGPPRPHRPEATPSMASLGPegeelarvaeGTSFPPQEPRHSPQ--VKMAPTSSPAE 2048
Cdd:PRK14971 440 pSTAPQAVRPAQFKEEKKIPVSKVSSLGP----------STLRPIQEKAEQATgnIKEAPTGTQKE 495
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
1994-2095 |
5.69e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.90 E-value: 5.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1994 PGPPRPHRPEATPSMASLGPEGEELARVAEGTSFPP-QEPRHSPQVKMAPTSSPAEPHCWPAEAALGTgAEPTCSQAASS 2072
Cdd:PRK07764 396 AAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPaPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPS-AQPAPAPAAAP 474
|
90 100
....*....|....*....|...
gi 578837048 2073 KAPSSGSAQPPEGHPGKPEPSRA 2095
Cdd:PRK07764 475 EPTAAPAPAPPAAPAPAAAPAAP 497
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1928-2126 |
7.80e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.85 E-value: 7.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1928 PKHPKDSREnffPVTVVPTAPDPVPADSVQRPSDAHTKPrpalaaattiitcPPSASASTLDQSKDPGPPRPhrpeatPS 2007
Cdd:PHA03247 2475 PGAPVYRRP---AEARFPFAAGAAPDPGGGGPPDPDAPP-------------APSRLAPAILPDEPVGEPVH------PR 2532
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2008 MASLGPEGEELARVAEGTSFPPQEPRHSPQV--KMAPTSSPAEPHCWPAEAALGT--GAEPtcsQAASSKAPSSGSAQPP 2083
Cdd:PHA03247 2533 MLTWIRGLEELASDDAGDPPPPLPPAAPPAApdRSVPPPRPAPRPSEPAVTSRARrpDAPP---QSARPRAPVDDRGDPR 2609
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 578837048 2084 -EGHPGKPEPSRAKSRPLPNMPKlviPSAATKFPPEITVTPPTP 2126
Cdd:PHA03247 2610 gPAPPSPLPPDTHAPDPPPPSPS---PAANEPDPHPPPTVPPPE 2650
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
1958-2160 |
8.68e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 41.00 E-value: 8.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 1958 RPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGPPrPHRPEATPSMASLGPEGEELARVAEGTsfpPQEPRHSPQ 2037
Cdd:PRK07994 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAV-PPPPASAPQQAPAVPLPETTSQLLAAR---QQLQRAQGA 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837048 2038 VKmAPTSSPAEPhcwpaeaalgTGAEPTcSQAASSKAPSSGSAQPPEGHPGKPEPSRAKSR-PLPNMPKLVIPSAATKFP 2116
Cdd:PRK07994 436 TK-AKKSEPAAA----------SRARPV-NSALERLASVRPAPSALEKAPAKKEAYRWKATnPVEVKKEPVATPKALKKA 503
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 578837048 2117 PEITVTPPTPTLLSPKGSISE---ETKQKLKSAILSAQSAANVRKES 2160
Cdd:PRK07994 504 LEHEKTPELAAKLAAEAIERDpwaALVSQLGLPGLVEQLALNAWKEE 550
|
|
| |
