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Conserved domains on  [gi|672039274|ref|XP_008758329|]
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crossover junction endonuclease MUS81 isoform X2 [Rattus norvegicus]

Protein Classification

crossover junction endonuclease MUS81( domain architecture ID 15338741)

crossover junction endonuclease MUS81 interacts with EME1 to form a DNA structure-specific endonuclease with substrate preference for branched DNA structures with a 5'-end at the branch nick

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
XPF_nuclease_Mus81 cd20074
XPF-like nuclease domain of Mus81; Mus81 is a crossover junction endonuclease that interacts ...
 271-424 1.40e-74

XPF-like nuclease domain of Mus81; Mus81 is a crossover junction endonuclease that interacts with Eme1 and Eme2 to form a DNA structure-specific endonuclease with substrate preference for branched DNA structures with a 5'-end at the branch nick. The typical substrates include 3'-flap structures, replication forks and nicked Holliday junctions. Mus81 may be required in mitosis for the processing of stalled or collapsed replication forks. Mus81 consists of the active nuclease domain with the GDX(n)ERKX(3)D motif which is required for metal-dependent endonuclease activity and two helix-hairpin-helix (HhH2) domains.


:

Pssm-ID: 410850 [Multi-domain]  Cd Length: 150  Bit Score: 233.53  E-value: 1.40e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672039274 271 EYRVLLCVDIGETRGAGHRPEMLRELQRLRVPHTVRKLHVGDFVWVAqetRPRDPERpGELVLDHIVERKRLDDLCSSII 350
Cdd:cd20074    1 SYEVVLLVDNREVKGKKDRDYFQRELEKLGVKVETRSLPVGDFLWVA---RHKSDTG-EELVLDYIVERKRLDDLASSIK 76

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 672039274 351 DGRFREQKFRLKRCGLGHRIYLVEEHGSVQNLSLPESTLLQAVTNTQVIDGFFVKRTMDIKESAGYLALLTKGL 424
Cdd:cd20074   77 DGRYHEQKFRLKRSGIKNVIYLVEGDGSAQSGGLPEEALKTALANTQVVDGFFVKRTKSLDETVRYLARLTRAL 150
WH_MUS81 cd21036
winged helix domain found in crossover junction endonuclease MUS81 and similar proteins; MUS81 ...
 123-212 3.57e-22

winged helix domain found in crossover junction endonuclease MUS81 and similar proteins; MUS81 is a crossover junction endonuclease that interacts with EME1 (essential meiotic structure-specific endonuclease 1) and EME2, to form a DNA structure-specific endonuclease with substrate preference for branched DNA structures with a 5'-end at the branch nick. The MUS80-EME1 endonuclease maintains genomic integrity in metazoans by cleaving branched DNA structures that can form during mitosis and fission yeast meiosis, and during processing of damaged replication folks. This model corresponds to the winged helix (WH) domain of MUS81, which is responsible for DNA binding. It comprises four helices and two beta strands.


:

Pssm-ID: 411029  Cd Length: 94  Bit Score: 91.06  E-value: 3.57e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672039274 123 YWPAQNSGAREILLQLYREHLNsDGHSFLTKEELLQKcAQK---TPRVVPESSR---PWPALRGLLHRNLVLRTHRPARY 196
Cdd:cd21036    1 YVPKYRSGAYAILLALYKLDKE-PGKGGLTKEELIRR-AQPycdSSFTIPDPGSfytAWSSMKTLIKKGLVYKEGRPARY 78

                         90
                 ....*....|....*.
gi 672039274 197 ALTPEGLELAQKLAEA 212
Cdd:cd21036   79 SLTEEGRELAEKLAEA 94
 
Name Accession Description Interval E-value
XPF_nuclease_Mus81 cd20074
XPF-like nuclease domain of Mus81; Mus81 is a crossover junction endonuclease that interacts ...
 271-424 1.40e-74

XPF-like nuclease domain of Mus81; Mus81 is a crossover junction endonuclease that interacts with Eme1 and Eme2 to form a DNA structure-specific endonuclease with substrate preference for branched DNA structures with a 5'-end at the branch nick. The typical substrates include 3'-flap structures, replication forks and nicked Holliday junctions. Mus81 may be required in mitosis for the processing of stalled or collapsed replication forks. Mus81 consists of the active nuclease domain with the GDX(n)ERKX(3)D motif which is required for metal-dependent endonuclease activity and two helix-hairpin-helix (HhH2) domains.


Pssm-ID: 410850 [Multi-domain]  Cd Length: 150  Bit Score: 233.53  E-value: 1.40e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672039274 271 EYRVLLCVDIGETRGAGHRPEMLRELQRLRVPHTVRKLHVGDFVWVAqetRPRDPERpGELVLDHIVERKRLDDLCSSII 350
Cdd:cd20074    1 SYEVVLLVDNREVKGKKDRDYFQRELEKLGVKVETRSLPVGDFLWVA---RHKSDTG-EELVLDYIVERKRLDDLASSIK 76

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 672039274 351 DGRFREQKFRLKRCGLGHRIYLVEEHGSVQNLSLPESTLLQAVTNTQVIDGFFVKRTMDIKESAGYLALLTKGL 424
Cdd:cd20074   77 DGRYHEQKFRLKRSGIKNVIYLVEGDGSAQSGGLPEEALKTALANTQVVDGFFVKRTKSLDETVRYLARLTRAL 150
ERCC4 pfam02732
ERCC4 domain; This domain is a family of nucleases. The family includes EME1 which is an ...
 278-420 4.36e-32

ERCC4 domain; This domain is a family of nucleases. The family includes EME1 which is an essential component of a Holliday junction resolvase. EME1 interacts with MUS81 to form a DNA structure-specific endonuclease.


Pssm-ID: 426945 [Multi-domain]  Cd Length: 139  Bit Score: 120.23  E-value: 4.36e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672039274  278 VDIGEtrgagHRPEMLRE-LQRLRVPHTVRKLHVGDFVWVAQETRPRdperpGELVLDHIVERKRLDDLCSSIIDGRFRE 356
Cdd:pfam02732   1 VDTRE-----LRSSIPELlLEELGVEVVVETLPVGDYLWVPREYDLE-----LEVVLDVIVERKSLDDLVSSIIDGRLFE 70

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672039274  357 QKFRLKRcGLGHRIYLVEEHGSVQN------LSLPESTLLQAVTNTQVIDGFFVKRTMDIKESAGYLALL 420
Cdd:pfam02732  71 QKSRLKR-GYKKPILLVEGLDLFSRklknkrRDINPNAIEGALASLQVDYGVRIIRTRSAEETAEWLASL 139
ERCC4 smart00891
ERCC4 domain; This entry represents a structural motif found in several DNA repair nucleases, ...
 275-374 9.97e-30

ERCC4 domain; This entry represents a structural motif found in several DNA repair nucleases, such as Rad1/Mus81/XPF endonucleases, and in ATP-dependent helicases. The XPF/Rad1/Mus81-dependent nuclease family specifically cleaves branched structures generated during DNA repair, replication, and recombination, and is essential for maintaining genome stability. The nuclease domain architecture exhibits remarkable similarity to those of restriction endonucleases.


Pssm-ID: 214888 [Multi-domain]  Cd Length: 98  Bit Score: 112.44  E-value: 9.97e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672039274   275 LLCVDIGETRGAGHRPeMLRELQ-RLRVPHTVRKLHVGDFVWVAQETRPRDPErpgELVLDHIVERKRLDDLCSSIIDGR 353
Cdd:smart00891   1 EIIVDSRELRSALEAP-IPRSLRwKRGVKVEYDRLEAGDFVLVARDKQSLLPH---VNSLNELVERKSLTDLVASIPDGR 76

                           90       100
                   ....*....|....*....|.
gi 672039274   354 FREQKFRLKRCGLGHRIYLVE 374
Cdd:smart00891  77 LFEQVRRLQQIAYPSPQLLVE 97
WH_MUS81 cd21036
winged helix domain found in crossover junction endonuclease MUS81 and similar proteins; MUS81 ...
 123-212 3.57e-22

winged helix domain found in crossover junction endonuclease MUS81 and similar proteins; MUS81 is a crossover junction endonuclease that interacts with EME1 (essential meiotic structure-specific endonuclease 1) and EME2, to form a DNA structure-specific endonuclease with substrate preference for branched DNA structures with a 5'-end at the branch nick. The MUS80-EME1 endonuclease maintains genomic integrity in metazoans by cleaving branched DNA structures that can form during mitosis and fission yeast meiosis, and during processing of damaged replication folks. This model corresponds to the winged helix (WH) domain of MUS81, which is responsible for DNA binding. It comprises four helices and two beta strands.


Pssm-ID: 411029  Cd Length: 94  Bit Score: 91.06  E-value: 3.57e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672039274 123 YWPAQNSGAREILLQLYREHLNsDGHSFLTKEELLQKcAQK---TPRVVPESSR---PWPALRGLLHRNLVLRTHRPARY 196
Cdd:cd21036    1 YVPKYRSGAYAILLALYKLDKE-PGKGGLTKEELIRR-AQPycdSSFTIPDPGSfytAWSSMKTLIKKGLVYKEGRPARY 78

                         90
                 ....*....|....*.
gi 672039274 197 ALTPEGLELAQKLAEA 212
Cdd:cd21036   79 SLTEEGRELAEKLAEA 94
MUS81 COG1948
ERCC4-type crossover junction endonuclease [Replication, recombination and repair];
289-511 3.24e-07

ERCC4-type crossover junction endonuclease [Replication, recombination and repair];


Pssm-ID: 441551 [Multi-domain]  Cd Length: 214  Bit Score: 51.33  E-value: 3.24e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672039274 289 RPEMLRELQRLRVPHTVRKLHVGDFVwvaqetrprdperpgelVLDHI-VERKRLDDLCSSIIDGRFREQKFRLKRCgLG 367
Cdd:COG1948   12 NSGVPRLLSRLGVEVRVKTLEVGDYV-----------------VSDRVaVERKTVRDFVNSLIDGRLFEQASRLAEA-YE 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672039274 368 HRIYLVEEHGSVQNLSLPESTLLQAVTNTQVIDGFFVKRTMDIKESAGYLALLTKGL-ERLYQGHTLHSRPwgtpgdaes 446
Cdd:COG1948   74 RPVLIIEGDLLYEERNIHPNAIRGALASLALDFGIPVLPTRDAEDTAELLVTLARREqEEEKREVSLHGKK--------- 144

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 672039274 447 eakpstnplcslltfsdfnaeavknKAQSVREvfaRQLMQVRGLSG---EKAAALVDRYSTPASLLAA 511
Cdd:COG1948  145 -------------------------KPKTLRE---QQLYVVESLPGigpKLARRLLEHFGSVEAVFNA 184
PRK13766 PRK13766
Hef nuclease; Provisional
 289-363 5.09e-04

Hef nuclease; Provisional


Pssm-ID: 237496 [Multi-domain]  Cd Length: 773  Bit Score: 42.94  E-value: 5.09e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 672039274 289 RPEMLRELQRLRVPHTVRKLHVGDFVwvaqetrprdperpgelVLDHI-VERKRLDDLCSSIIDGRFREQKFRLKR 363
Cdd:PRK13766 573 RSNVARHLKRLGAEVELKTLEVGDYV-----------------VSDRVaVERKTAEDFVDSIIDRRLFEQVKDLKR 631
 
Name Accession Description Interval E-value
XPF_nuclease_Mus81 cd20074
XPF-like nuclease domain of Mus81; Mus81 is a crossover junction endonuclease that interacts ...
 271-424 1.40e-74

XPF-like nuclease domain of Mus81; Mus81 is a crossover junction endonuclease that interacts with Eme1 and Eme2 to form a DNA structure-specific endonuclease with substrate preference for branched DNA structures with a 5'-end at the branch nick. The typical substrates include 3'-flap structures, replication forks and nicked Holliday junctions. Mus81 may be required in mitosis for the processing of stalled or collapsed replication forks. Mus81 consists of the active nuclease domain with the GDX(n)ERKX(3)D motif which is required for metal-dependent endonuclease activity and two helix-hairpin-helix (HhH2) domains.


Pssm-ID: 410850 [Multi-domain]  Cd Length: 150  Bit Score: 233.53  E-value: 1.40e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672039274 271 EYRVLLCVDIGETRGAGHRPEMLRELQRLRVPHTVRKLHVGDFVWVAqetRPRDPERpGELVLDHIVERKRLDDLCSSII 350
Cdd:cd20074    1 SYEVVLLVDNREVKGKKDRDYFQRELEKLGVKVETRSLPVGDFLWVA---RHKSDTG-EELVLDYIVERKRLDDLASSIK 76

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 672039274 351 DGRFREQKFRLKRCGLGHRIYLVEEHGSVQNLSLPESTLLQAVTNTQVIDGFFVKRTMDIKESAGYLALLTKGL 424
Cdd:cd20074   77 DGRYHEQKFRLKRSGIKNVIYLVEGDGSAQSGGLPEEALKTALANTQVVDGFFVKRTKSLDETVRYLARLTRAL 150
XPF_nuclease-like cd19940
nuclease domain of XPF/MUS81 family proteins; The XPF/MUS81 family belongs to 3'-flap ...
 275-422 5.70e-35

nuclease domain of XPF/MUS81 family proteins; The XPF/MUS81 family belongs to 3'-flap endonuclease that act upon 3'-flap structures and involved in DNA repair pathways that are necessary for the removal of UV-light-induced DNA lesions and cross-links between DNA strands. Family members exist either as heterodimers or as homodimers in their functionally competent states which consist of a catalytic and a noncatalytic subunit. The catalytic subunits have a DX(n)RKX(3)D motif. This motif is required for metal-dependent endonuclease activity but not for DNA junction binding. The equivalent regions of the noncatalytic subunits (ERCC1, EME1, and FAAP24) have diverged. The noncatalytic subunits have roles such as binding ssDNA or an ability to target the endonuclease to defined DNA structures or sites of DNA damage.


Pssm-ID: 410849 [Multi-domain]  Cd Length: 126  Bit Score: 127.88  E-value: 5.70e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672039274 275 LLCVDIGETRgaghrPEMLRELQRLRVPHTVRKLHVGDFVWVAqetrprdperpgelvlDHIVERKRLDDLCSSIIDGRF 354
Cdd:cd19940    1 SIVVDPRERR-----SELLSELQRLGVQVEFEDLAVGDYVLSN----------------RTCVERKSLSDLVSSINKGRL 59

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 672039274 355 REQKFRLKRCGLgHRIYLVEEHGSVQNLSLPESTLLQAVTNTQVIDGFFVKRTMDIKESAGYLALLTK 422
Cdd:cd19940   60 REQLQRLTRKFE-RRVLLVEKDRSKFRSMVSSVQALSALTKLQLLTGIRLLIVASPKETADLLEELTQ 126
XPF_ERCC4_MUS81-like cd22367
XPF family DNA repair endonuclease; (Xeroderma Pigmentosum group F) DNA repair gene homologs ...
 276-420 8.84e-35

XPF family DNA repair endonuclease; (Xeroderma Pigmentosum group F) DNA repair gene homologs are members of the XPF/Rad1/Mus81-dependent nuclease family which specifically cleave branched structures generated during DNA repair, replication, and recombination, and they are essential for maintaining genome stability. They belong to a wider superfamily of nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.


Pssm-ID: 411771 [Multi-domain]  Cd Length: 123  Bit Score: 126.99  E-value: 8.84e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672039274 276 LCVDIGETRGaghrpEMLRELQRLRVPHTVRKLHVGDFVWVAqetrprdperpgelvlDHIVERKRLDDLCSSIIDGRFR 355
Cdd:cd22367    1 IVVDSRERRS-----GLPELLRKLGVRVEVRTLEVGDYILSA----------------DIIVERKTVSDLISSIIDGRLF 59

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 672039274 356 EQKFRLKRCGLgHRIYLVEEHGSVQNLSLPESTLLQAVTNTQVIDGFFVKRTMDIKESAGYLALL 420
Cdd:cd22367   60 EQAERLKRSYE-RPILLIEGDPDKARRLVRPAALGAAISSLLVIGGLLVLRTPNFETTALLLSLL 123
ERCC4 pfam02732
ERCC4 domain; This domain is a family of nucleases. The family includes EME1 which is an ...
 278-420 4.36e-32

ERCC4 domain; This domain is a family of nucleases. The family includes EME1 which is an essential component of a Holliday junction resolvase. EME1 interacts with MUS81 to form a DNA structure-specific endonuclease.


Pssm-ID: 426945 [Multi-domain]  Cd Length: 139  Bit Score: 120.23  E-value: 4.36e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672039274  278 VDIGEtrgagHRPEMLRE-LQRLRVPHTVRKLHVGDFVWVAQETRPRdperpGELVLDHIVERKRLDDLCSSIIDGRFRE 356
Cdd:pfam02732   1 VDTRE-----LRSSIPELlLEELGVEVVVETLPVGDYLWVPREYDLE-----LEVVLDVIVERKSLDDLVSSIIDGRLFE 70

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672039274  357 QKFRLKRcGLGHRIYLVEEHGSVQN------LSLPESTLLQAVTNTQVIDGFFVKRTMDIKESAGYLALL 420
Cdd:pfam02732  71 QKSRLKR-GYKKPILLVEGLDLFSRklknkrRDINPNAIEGALASLQVDYGVRIIRTRSAEETAEWLASL 139
ERCC4 smart00891
ERCC4 domain; This entry represents a structural motif found in several DNA repair nucleases, ...
 275-374 9.97e-30

ERCC4 domain; This entry represents a structural motif found in several DNA repair nucleases, such as Rad1/Mus81/XPF endonucleases, and in ATP-dependent helicases. The XPF/Rad1/Mus81-dependent nuclease family specifically cleaves branched structures generated during DNA repair, replication, and recombination, and is essential for maintaining genome stability. The nuclease domain architecture exhibits remarkable similarity to those of restriction endonucleases.


Pssm-ID: 214888 [Multi-domain]  Cd Length: 98  Bit Score: 112.44  E-value: 9.97e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672039274   275 LLCVDIGETRGAGHRPeMLRELQ-RLRVPHTVRKLHVGDFVWVAQETRPRDPErpgELVLDHIVERKRLDDLCSSIIDGR 353
Cdd:smart00891   1 EIIVDSRELRSALEAP-IPRSLRwKRGVKVEYDRLEAGDFVLVARDKQSLLPH---VNSLNELVERKSLTDLVASIPDGR 76

                           90       100
                   ....*....|....*....|.
gi 672039274   354 FREQKFRLKRCGLGHRIYLVE 374
Cdd:smart00891  77 LFEQVRRLQQIAYPSPQLLVE 97
WH_MUS81 cd21036
winged helix domain found in crossover junction endonuclease MUS81 and similar proteins; MUS81 ...
 123-212 3.57e-22

winged helix domain found in crossover junction endonuclease MUS81 and similar proteins; MUS81 is a crossover junction endonuclease that interacts with EME1 (essential meiotic structure-specific endonuclease 1) and EME2, to form a DNA structure-specific endonuclease with substrate preference for branched DNA structures with a 5'-end at the branch nick. The MUS80-EME1 endonuclease maintains genomic integrity in metazoans by cleaving branched DNA structures that can form during mitosis and fission yeast meiosis, and during processing of damaged replication folks. This model corresponds to the winged helix (WH) domain of MUS81, which is responsible for DNA binding. It comprises four helices and two beta strands.


Pssm-ID: 411029  Cd Length: 94  Bit Score: 91.06  E-value: 3.57e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672039274 123 YWPAQNSGAREILLQLYREHLNsDGHSFLTKEELLQKcAQK---TPRVVPESSR---PWPALRGLLHRNLVLRTHRPARY 196
Cdd:cd21036    1 YVPKYRSGAYAILLALYKLDKE-PGKGGLTKEELIRR-AQPycdSSFTIPDPGSfytAWSSMKTLIKKGLVYKEGRPARY 78

                         90
                 ....*....|....*.
gi 672039274 197 ALTPEGLELAQKLAEA 212
Cdd:cd21036   79 SLTEEGRELAEKLAEA 94
XPF_nuclease_XPF_arch cd20075
nuclease domain of XPF found in archaea; XPF, also called DNA excision repair protein ERCC-4, ...
 289-363 1.57e-08

nuclease domain of XPF found in archaea; XPF, also called DNA excision repair protein ERCC-4, or DNA repair protein complementing XP-F cells, or Xeroderma pigmentosum group F-complementing protein, is a 3'-flap repair endonuclease that cleaves 5' of ds/ssDNA interfaces in 3' flap structures, although it also cuts bubble, Y-DNA structures and mobile and immobile Holliday junctions. XPF cuts preferentially after pyrimidines, may continue to progressively cleave substrate upstream of the initial cleavage, at least in vitro. It may be involved in nucleotide excision repair. The nuclease domains of the catalytic subunits XPF have the GDX(n)ERKX(3)D motif which is required for metal-dependent endonuclease activity but not for DNA junction binding. XPF-ERRC1 and its yeast homolog Rad1-Rad10 play key roles in the excision of DNA lesions and are required for certain types of homologous recombination events and for the repair of DNA cross-links.


Pssm-ID: 410851 [Multi-domain]  Cd Length: 127  Bit Score: 53.16  E-value: 1.57e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 672039274 289 RPEMLRELQRLRVPHTVRKLHVGDFVwVAQETrprdperpgelvldhIVERKRLDDLCSSIIDGRFREQKFRLKR 363
Cdd:cd20075   10 NSGVVRELKELGVEVEFKQLEVGDYI-VSDRV---------------AIERKTVDDFVSSIIDGRLFDQAKRLKE 68
MUS81 COG1948
ERCC4-type crossover junction endonuclease [Replication, recombination and repair];
289-511 3.24e-07

ERCC4-type crossover junction endonuclease [Replication, recombination and repair];


Pssm-ID: 441551 [Multi-domain]  Cd Length: 214  Bit Score: 51.33  E-value: 3.24e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672039274 289 RPEMLRELQRLRVPHTVRKLHVGDFVwvaqetrprdperpgelVLDHI-VERKRLDDLCSSIIDGRFREQKFRLKRCgLG 367
Cdd:COG1948   12 NSGVPRLLSRLGVEVRVKTLEVGDYV-----------------VSDRVaVERKTVRDFVNSLIDGRLFEQASRLAEA-YE 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672039274 368 HRIYLVEEHGSVQNLSLPESTLLQAVTNTQVIDGFFVKRTMDIKESAGYLALLTKGL-ERLYQGHTLHSRPwgtpgdaes 446
Cdd:COG1948   74 RPVLIIEGDLLYEERNIHPNAIRGALASLALDFGIPVLPTRDAEDTAELLVTLARREqEEEKREVSLHGKK--------- 144

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 672039274 447 eakpstnplcslltfsdfnaeavknKAQSVREvfaRQLMQVRGLSG---EKAAALVDRYSTPASLLAA 511
Cdd:COG1948  145 -------------------------KPKTLRE---QQLYVVESLPGigpKLARRLLEHFGSVEAVFNA 184
PRK13766 PRK13766
Hef nuclease; Provisional
 289-363 5.09e-04

Hef nuclease; Provisional


Pssm-ID: 237496 [Multi-domain]  Cd Length: 773  Bit Score: 42.94  E-value: 5.09e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 672039274 289 RPEMLRELQRLRVPHTVRKLHVGDFVwvaqetrprdperpgelVLDHI-VERKRLDDLCSSIIDGRFREQKFRLKR 363
Cdd:PRK13766 573 RSNVARHLKRLGAEVELKTLEVGDYV-----------------VSDRVaVERKTAEDFVDSIIDRRLFEQVKDLKR 631
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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